Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 183 of 362
Found at i:60740803 original size:27 final size:27
Alignment explanation
Indices: 60740502--60740800 Score: 300
Period size: 27 Copynumber: 11.1 Consensus size: 27
60740492 TAACACCCTA
** * *
60740502 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
60740529 AGGGAAAAAC-GATAATTCTGTAAATTG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
* * * * *
60740556 AGGGTAAAATAATAATT-TTTTAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
60740582 AGGGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
60740609 AGGGTAAAACAGTAATTCTGTCAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
60740636 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
60740663 AAGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
** *
60740690 AGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
60740717 AGGGTAAAACAATAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
60740744 AGGGTAAAA-TGATAATTTTTTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
*
60740771 AGGGTAAAACAGTAATTCTATAAATC-
1 AGGGTAAAACAGTAATTCTGTAAATCG
60740797 AGGG
1 AGGG
60740801 GTACATTGGT
Statistics
Matches: 224, Mismatches: 43, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
26 26 0.12
27 197 0.88
28 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:60740803 original size:54 final size:54
Alignment explanation
Indices: 60740502--60740800 Score: 341
Period size: 54 Copynumber: 5.6 Consensus size: 54
60740492 TAACACCCTA
** * * *
60740502 AGGGTAAAATGGTAATTTTATAAATCGAGGGAAAAACGATAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
* * * * * * *
60740556 AGGGTAAAATAATAATT-TTTTAATCAAGGGTAAAACAATAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
* * * *
60740609 AGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
* * * * * * *
60740663 AAGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
* * * *
60740717 AGGGTAAAACAATAATTCTATAAATCGAGGGTAAAATGATAATTTTTTAAATCG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
60740771 AGGGTAAAACAGTAATTCTATAAATC-AGGG
1 AGGGTAAAACAGTAATTCTATAAATCGAGGG
60740801 GTACATTGGT
Statistics
Matches: 209, Mismatches: 35, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
53 48 0.23
54 161 0.77
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.30
Consensus pattern (54 bp):
AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCG
Found at i:60740830 original size:81 final size:81
Alignment explanation
Indices: 60740502--60740795 Score: 387
Period size: 81 Copynumber: 3.6 Consensus size: 81
60740492 TAACACCCTA
* * * *
60740502 AGGGTAAAATGGTAATTTTATAAATCGAGGGAAAAAC-GATAATTCTGTAAATTGAGGGTAAAAT
1 AGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATTGAGGGTAAAAC
* * *
60740566 AATAATT-TTTTAATCA
65 AATAATTCTATAAATCG
** * * *
60740582 AGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACG
1 AGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACA
*
60740647 GTAATTCTATAAATCG
66 ATAATTCTATAAATCG
* **
60740663 AAGGTAAAAT-AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAC
1 AGGGTAAAATGA-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAAC
60740727 AATAATTCTATAAATCG
65 AATAATTCTATAAATCG
* *
60740744 AGGGTAAAATGATAATTTTTTAAATCGAGGGTAAAACAGTAATTCTATAAAT
1 AGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAAT
60740796 CAGGGGTACA
Statistics
Matches: 184, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
80 60 0.33
81 123 0.67
82 1 0.01
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (81 bp):
AGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATTGAGGGTAAAACA
ATAATTCTATAAATCG
Found at i:60740856 original size:81 final size:81
Alignment explanation
Indices: 60740771--60740927 Score: 192
Period size: 81 Copynumber: 1.9 Consensus size: 81
60740761 TTTTAAATCG
* *
60740771 AGGGTAAAACAGTAA-TTCTATAAATCAGGGGTACATTGGTAATTTTACAAGTCGA-GGGTATTT
1 AGGGTAAAACAGTAATTTCCA-AAATCAGGGGTACATTGGTAATTTTACAA-ACGAGGGGTATTT
60740834 CAATAATTTTACAGGTCA
64 CAATAATTTTACAGGTCA
*** ** * **
60740852 AGGGTATTTCAGTAATTTCCAAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 AGGGTAAAACAGTAATTTCCAAAATCAGGGGTACATTGGTAATTTTACAAACGAGGGGTATTTCA
60740917 ATAATTTTACA
66 ATAATTTTACA
60740928 AACCAGGGGT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 2 0.03
81 58 0.91
82 4 0.06
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (81 bp):
AGGGTAAAACAGTAATTTCCAAAATCAGGGGTACATTGGTAATTTTACAAACGAGGGGTATTTCA
ATAATTTTACAGGTCA
Found at i:60740883 original size:27 final size:27
Alignment explanation
Indices: 60740809--60741032 Score: 143
Period size: 27 Copynumber: 8.3 Consensus size: 27
60740799 GGGTACATTG
* *
60740809 GTAATTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAAATAG-GGGTATTTCA
* ** *
60740836 ATAATTTTAC-AGGTCAAGGGTATTTCA
1 GTAATTTTACAAAAT-AGGGGTATTTCA
* **
60740863 GTAA-TTTCCAAAATCAGGGGTATTTTG
1 GTAATTTTACAAAAT-AGGGGTATTTCA
* *
60740890 GTAATTTTACAAACTAGGGGTATTT-T
1 GTAATTTTACAAAATAGGGGTATTTCA
** **
60740916 GATAATTTTACAAACCAGGGGTATTTTG
1 G-TAATTTTACAAAATAGGGGTATTTCA
* **
60740944 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAAATAGGGGTATTTCA
* * *
60740971 GTAATTTTATAAACA-AAGGGTATTTTA
1 GTAATTTTACAAA-ATAGGGGTATTTCA
** **
60740998 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAAATAGGGGTATTTCA
60741025 GTAATTTT
1 GTAATTTT
60741033 GTAAACCAAG
Statistics
Matches: 165, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
26 5 0.03
27 151 0.92
28 9 0.05
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAAATAGGGGTATTTCA
Found at i:60740895 original size:54 final size:54
Alignment explanation
Indices: 60740851--60741068 Score: 206
Period size: 54 Copynumber: 4.0 Consensus size: 54
60740841 TTTACAGGTC
*
60740851 AAGGGTATTTCAG-TAATTTC-CAAAATCAGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTT-AGATAATTTCAC-AAACCAGGGGTATTTTGGTAATTTTACAAACT
* * *
60740905 AGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTAGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * * * * * * * *
60740959 AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTAGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
* * * *** * **
60741013 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTGTAAACT
1 AAGGGTATTTAGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
60741067 AA
1 AA
60741069 ATTATTCTAA
Statistics
Matches: 145, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 143 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTAGATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAACT
Found at i:60740938 original size:81 final size:80
Alignment explanation
Indices: 60740792--60741059 Score: 288
Period size: 81 Copynumber: 3.3 Consensus size: 80
60740782 GTAATTCTAT
** * * * *** *
60740792 AAATCAGGGGTACATTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCAAGGG
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACCAGGGG
** *
60740856 TATTTCAGTAATTTCCA
64 TATTTTGGTAATTTACA
60740873 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACCAGGGGT
60740938 ATTTTGGTAATTTTACA
65 ATTTTGGTAA-TTTACA
* * * *
60740955 AACT-AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAACCAGGGGT
***
60741019 ATTTTGGTAATTTTGT
65 ATTTTGGTAATTTACA
* *
60741035 AAACCAAGGGTATTTTGGTAATTTT
1 AAATCAGGGGTATTTTGGTAATTTT
60741060 GTAAACTAAA
Statistics
Matches: 160, Mismatches: 22, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
80 6 0.04
81 142 0.89
82 12 0.08
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (80 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACCAGGGGTA
TTTTGGTAATTTACA
Found at i:60741065 original size:27 final size:27
Alignment explanation
Indices: 60740877--60741059 Score: 276
Period size: 27 Copynumber: 6.8 Consensus size: 27
60740867 TTTCCAAAAT
60740877 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
60740904 TAGGGGTATTTTGATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
60740931 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
60740958 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
60740985 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
60741012 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
60741039 CAAGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
60741060 GTAAACTAAA
Statistics
Matches: 140, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:60748383 original size:43 final size:43
Alignment explanation
Indices: 60748225--60748392 Score: 175
Period size: 43 Copynumber: 3.9 Consensus size: 43
60748215 AGGATTCCCA
* * **
60748225 TATGTGATTGCGTGTAAGACCACATCTGGGAC-GTTGGCATCGAT
1 TATGTGATTACATGTAAGACCATGTCTGGGACAG-TGGCATCG-T
* *
60748269 T-TGTGATTTACGTGTAAGACCATGTCTGGGACA-TCGGCATTG-
1 TATGTGA-TTACATGTAAGACCATGTCTGGGACAGT-GGCATCGT
* *
60748311 TATTTGATT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGT
1 TATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATCGT
* *
60748353 TATGTGATTACATGTAAGACCATGTTTGGGACATTGGCAT
1 TATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCAT
60748393 TTTCGAGTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
41 27 0.26
42 12 0.11
43 37 0.35
44 29 0.28
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCATCGT
Found at i:60749164 original size:9 final size:9
Alignment explanation
Indices: 60749152--60749185 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
60749142 TATGGCTTAC
60749152 AAAGCTTTT
1 AAAGCTTTT
**
60749161 AAAGCTTAC
1 AAAGCTTTT
60749170 AAAGCTTTT
1 AAAGCTTTT
60749179 AAAGCTT
1 AAAGCTT
60749186 ACTCTGTGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (9 bp):
AAAGCTTTT
Found at i:60749169 original size:18 final size:18
Alignment explanation
Indices: 60749146--60749187 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
60749136 TTTTCTTATG
60749146 GCTTACAAAGCTTTTAAA
1 GCTTACAAAGCTTTTAAA
60749164 GCTTACAAAGCTTTTAAA
1 GCTTACAAAGCTTTTAAA
60749182 GCTTAC
1 GCTTAC
60749188 TCTGTGTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (18 bp):
GCTTACAAAGCTTTTAAA
Found at i:60753318 original size:37 final size:37
Alignment explanation
Indices: 60753268--60753413 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
60753258 AGCTCAGATG
*
60753268 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
60753305 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
60753342 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
* *
60753379 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
60753414 ATATATTTCC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:60753615 original size:48 final size:48
Alignment explanation
Indices: 60753560--60753804 Score: 454
Period size: 48 Copynumber: 5.1 Consensus size: 48
60753550 ACACATCGCC
*
60753560 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
60753608 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60753656 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60753704 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60753752 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
60753800 TACAT
1 TACAT
60753805 CAATTTCCGC
Statistics
Matches: 193, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 193 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:60757113 original size:40 final size:40
Alignment explanation
Indices: 60757069--60757509 Score: 648
Period size: 40 Copynumber: 11.0 Consensus size: 40
60757059 GAATACACAT
* * * * *
60757069 CACCAGCATGATTGCTCTTTGGGACCTAGCCCGGCTATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
60757109 CACCAGCGCGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
60757149 CTCTAGCACAAATGCTCTTTGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
60757189 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
60757229 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
60757269 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
60757309 CACCAGCACGAATGCTCTTCGGGACTTGGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
60757349 CACCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
60757389 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
60757429 CACCAGCACGAATGCTCTTTGGGGCTTAGCCCGGCTATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--ATATAA
* *
60757471 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
60757510 TAACTCTCAA
Statistics
Matches: 361, Mismatches: 38, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
40 325 0.90
42 36 0.10
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:60761036 original size:47 final size:47
Alignment explanation
Indices: 60760982--60761241 Score: 395
Period size: 47 Copynumber: 5.6 Consensus size: 47
60760972 TATTTGAATA
*
60760982 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60761029 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
60761076 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
60761125 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATG
* * *
60761172 AATGTGAAAGTGTATATATGTGAT----CCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
60761215 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60761242 TCCCGAAGGG
Statistics
Matches: 198, Mismatches: 8, Indels: 15
0.90 0.04 0.07
Matches are distributed among these distances:
43 36 0.18
44 1 0.01
46 2 0.01
47 113 0.57
49 46 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:60761108 original size:96 final size:94
Alignment explanation
Indices: 60760982--60761241 Score: 411
Period size: 96 Copynumber: 2.8 Consensus size: 94
60760972 TATTTGAATA
*
60760982 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
60761047 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCCGAATGGCCAATGTGATG
60761076 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
60761141 TATGTGATAAGGCTGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
60761172 AATGTGAAAGTGTATATATGTGAT----CCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
60761233 TGTGATAAG
66 TGTGATAAG
60761242 TCCCGAAGGG
Statistics
Matches: 157, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
90 41 0.26
94 24 0.15
96 92 0.59
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:60761141 original size:143 final size:137
Alignment explanation
Indices: 60760982--60761241 Score: 414
Period size: 143 Copynumber: 1.9 Consensus size: 137
60760972 TATTTGAATA
*
60760982 AATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
60761046 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
65 ATGTGAT----CCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAA
60761111 TGGCCAATGTGATG
124 TGGCCAATGTGATG
60761125 AATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
60761190 TGTGATCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
60761242 TCCCGAAGGG
Statistics
Matches: 112, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
137 10 0.09
138 1 0.01
139 32 0.29
142 2 0.02
143 67 0.60
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (137 bp):
AATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCAA
TGTGATG
Found at i:60762698 original size:40 final size:40
Alignment explanation
Indices: 60762654--60762860 Score: 360
Period size: 40 Copynumber: 5.2 Consensus size: 40
60762644 GAGAATTGAG
*
60762654 AGTGATGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
60762694 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
60762734 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
60762774 ACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
60762814 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
60762854 AGTGATG
1 AGTGATG
60762861 CATTCGTGCT
Statistics
Matches: 159, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 159 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:60762865 original size:17 final size:17
Alignment explanation
Indices: 60762843--60762877 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60762833 GTCTCGAAGA
60762843 GCATTCGTGCTAGTGAT
1 GCATTCGTGCTAGTGAT
60762860 GCATTCGTGCTAGTGAT
1 GCATTCGTGCTAGTGAT
60762877 G
1 G
60762878 TATCCGGGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.34
Consensus pattern (17 bp):
GCATTCGTGCTAGTGAT
Found at i:60762891 original size:57 final size:57
Alignment explanation
Indices: 60762803--60762917 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
60762793 GTCTCGAAGA
60762803 GCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
1 GCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
*
60762860 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
1 GCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
60762917 G
1 G
60762918 TATCCGGGCT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (57 bp):
GCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
Found at i:60762915 original size:40 final size:40
Alignment explanation
Indices: 60762860--60763062 Score: 291
Period size: 40 Copynumber: 5.1 Consensus size: 40
60762850 TGCTAGTGAT
60762860 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
60762900 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
* *
60762940 ACATTCGTGCTAGTGATGTATCCGGACTAAGT-TCCGAAGA
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCT-CGAAGA
* * ** *
60762980 GCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGA
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
* * * *
60763020 GCATTCGTGCTAGTGTTATATCCGGGCTATGTCCCGAAGA
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
60763060 GCA
1 GCA
60763063 ATCATGCTGG
Statistics
Matches: 147, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 146 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGA
Found at i:60762929 original size:97 final size:97
Alignment explanation
Indices: 60762763--60762957 Score: 354
Period size: 97 Copynumber: 2.0 Consensus size: 97
60762753 GTCCCGAAGA
60762763 GCATTCGCGCTACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAG
1 GCATTCGCGCTACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAG
*
60762828 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
66 GCTAAGTCTCGAAGAACATTCGTGCTAGTGAT
* * *
60762860 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCATTCGCGCTACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAG
60762925 GCTAAGTCTCGAAGAACATTCGTGCTAGTGAT
66 GCTAAGTCTCGAAGAACATTCGTGCTAGTGAT
60762957 G
1 G
60762958 TATCCGGACT
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 94 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (97 bp):
GCATTCGCGCTACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAG
GCTAAGTCTCGAAGAACATTCGTGCTAGTGAT
Found at i:60762970 original size:137 final size:137
Alignment explanation
Indices: 60762723--60762996 Score: 480
Period size: 137 Copynumber: 2.0 Consensus size: 137
60762713 GTCCCGAAGA
60762723 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTATCCGG
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTATCCGG
*
60762788 GCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAG-TCTCGAAGAGCATTCGTG
66 GCTAAGTCTCGAAGAACATTCGTGCTAGTGATGTATCCAGGCTAAGTTC-CGAAGAGCATTCGTG
60762852 CTAGTGAT
130 CTAGTGAT
* * *
60762860 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTATCCGG
60762925 GCTAAGTCTCGAAGAACATTCGTGCTAGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTG
66 GCTAAGTCTCGAAGAACATTCGTGCTAGTGATGTATCCAGG-CTAAGTTCCGAAGAGCATTCGTG
60762989 CTAGTGAT
130 CTAGTGAT
60762997 ATATCCGTGC
Statistics
Matches: 131, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
136 2 0.02
137 127 0.97
138 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (137 bp):
GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTATCCGG
GCTAAGTCTCGAAGAACATTCGTGCTAGTGATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGC
TAGTGAT
Found at i:60762980 original size:177 final size:177
Alignment explanation
Indices: 60762683--60763034 Score: 582
Period size: 177 Copynumber: 2.0 Consensus size: 177
60762673 GTCTCGAAGA
60762683 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
60762748 GCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGC
66 GCTAAGTCCCGAAGAACATTCGCGCTACTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGC
* ** *
60762813 TAGTGATGTATCCAG-GCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT
131 TAGTGATATATCC-GTGCTAAACCCCGAAGAGCATTCGTGCTAGTGAT
*
60762860 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* * *
60762925 GCTAAGTCTCGAAGAACATTCGTGCTAGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCGTG
66 GCTAAGTCCCGAAGAACATTCGCGCTACTGATGTATCCGGACTAAGTCT-CGAAGAGCATTCGTG
60762989 CTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTG
130 CTAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTG
60763035 TTATATCCGG
Statistics
Matches: 163, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
176 2 0.01
177 161 0.99
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (177 bp):
GCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
GCTAAGTCCCGAAGAACATTCGCGCTACTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGC
TAGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGAT
Found at i:60763029 original size:217 final size:217
Alignment explanation
Indices: 60762654--60763062 Score: 665
Period size: 217 Copynumber: 1.9 Consensus size: 217
60762644 GAGAATTGAG
*
60762654 AGTGATGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* * *
60762719 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTACTGATGTAT
66 AAGAACATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGCGCTACTGATATAT
** * * *
60762784 CCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTC
131 CCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTC
60762849 GTGCTAGTGATGCATTCGTGCT
196 GTGCTAGTGATGCATTCGTGCT
*
60762871 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* * *
60762936 AAGAACATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
66 AAGAACATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGCGCTACTGATATAT
* * * *
60763001 CCGTGCTAAACCCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGCTATGTCCCGAAGAGCA
131 CCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCA
60763063 ATCATGCTGG
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
217 175 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (217 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAACATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGCGCTACTGATATAT
CCGGGCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCGAAGAGCATTC
GTGCTAGTGATGCATTCGTGCT
Found at i:60763279 original size:25 final size:25
Alignment explanation
Indices: 60763238--60763289 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
60763228 TGTGTAATAA
60763238 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
60763263 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
60763288 TG
1 TG
60763290 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:60765665 original size:37 final size:37
Alignment explanation
Indices: 60765615--60765693 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
60765605 TTATTACGAA
* * *
60765615 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
60765652 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
60765689 GTCTT
1 GTCTT
60765694 TAGAGCTCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:60765890 original size:47 final size:47
Alignment explanation
Indices: 60765812--60766130 Score: 489
Period size: 47 Copynumber: 6.7 Consensus size: 47
60765802 CCCTTTGGGA
* * * * *
60765812 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
60765859 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60765906 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60765953 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60766000 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60766047 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60766096 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
60766131 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 3 0.01
47 205 0.81
49 46 0.18
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60769596 original size:40 final size:40
Alignment explanation
Indices: 60769308--60769769 Score: 408
Period size: 40 Copynumber: 11.6 Consensus size: 40
60769298 CCAGCATGAT
* * * *
60769308 TGCTCTTCGGGACCTAGCCCGAATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
60769348 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
60769388 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
60769428 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
60769468 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * * *
60769508 TGCTCTTCGAAACTTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
60769548 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* * * *
60769589 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCA-CACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACT-AGCACGAA
* * * *
60769629 TGC-CTTCGGG-CTTAGCCCAGA-ATTAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TA-TCACTAGCACGAA
* *
60769668 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
* * *
60769708 AGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
60769748 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
60769770 CATCATTCGA
Statistics
Matches: 371, Mismatches: 41, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 29 0.08
40 319 0.86
41 21 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:60771660 original size:37 final size:37
Alignment explanation
Indices: 60771610--60771688 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
60771600 TTATTACGAA
* * *
60771610 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
60771647 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
60771684 GTCTT
1 GTCTT
60771689 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:60771924 original size:47 final size:47
Alignment explanation
Indices: 60771807--60772263 Score: 776
Period size: 47 Copynumber: 9.7 Consensus size: 47
60771797 CCCTTCGGGA
* * * * * *
60771807 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60771853 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60771900 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60771947 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60771993 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60772040 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60772087 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60772134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60772181 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
60772230 CTTATCTCATATATGCA-TTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
60772264 AGAATCCTAA
Statistics
Matches: 394, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 98 0.25
47 250 0.63
49 46 0.12
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60772307 original size:234 final size:232
Alignment explanation
Indices: 60771818--60772263 Score: 716
Period size: 234 Copynumber: 1.9 Consensus size: 232
60771808 TTATCACATT
* * * * * * *
60771818 TATACACTTTCACATCCATCACGTTGGCCACT-CGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
60771882 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60771947 CTTATCACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 CTTATCACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* * * *
60772012 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
196 TTCACATCCATCACATCAG-CA-TAGGCCTAATCACAAA
60772051 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
60772116 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60772181 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
131 CTTATCAC---TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
60772246 A-TTTCACATCCATCACAT
193 ACTTTCACATCCATCACAT
60772264 AGAATCCTAA
Statistics
Matches: 199, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
233 28 0.14
234 102 0.51
236 16 0.08
237 53 0.27
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (232 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATCCATCACATCAGCATAGGCCTAATCACAAA
Found at i:60777535 original size:47 final size:47
Alignment explanation
Indices: 60777354--60777710 Score: 572
Period size: 47 Copynumber: 7.6 Consensus size: 47
60777344 TATTTGAATA
60777354 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT-
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60777400 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60777447 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60777496 AATGTGAAAGTGTATATATGTGATAAGGCCTTATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
60777543 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60777590 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
60777637 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
60777684 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
60777711 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
46 44 0.15
47 203 0.70
49 45 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:60779147 original size:37 final size:37
Alignment explanation
Indices: 60779088--60779231 Score: 252
Period size: 37 Copynumber: 3.9 Consensus size: 37
60779078 AGCTCAGATG
* *
60779088 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
60779125 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60779162 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
60779199 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
60779232 AAATATATTT
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:60779434 original size:48 final size:48
Alignment explanation
Indices: 60779380--60779672 Score: 514
Period size: 48 Copynumber: 6.1 Consensus size: 48
60779370 ACACATCGCC
* * *
60779380 TACATATTTCACACTAGCCATTTGGCTTTACCACAAATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60779428 TACATATTTCACATTAGCCATTCGGCTTTACCACATAAACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60779476 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60779524 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60779572 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
60779620 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
60779668 TACAT
1 TACAT
60779673 CAATTTCCAC
Statistics
Matches: 235, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 235 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:60782863 original size:26 final size:26
Alignment explanation
Indices: 60782833--60782882 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
60782823 TTGATTCACA
*
60782833 CAAAA-TATTAATTATATATATTTTAC
1 CAAAATTATTAA-TATAAATATTTTAC
60782859 CAAAATTATTAATATAAATATTTT
1 CAAAATTATTAATATAAATATTTT
60782883 TAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (26 bp):
CAAAATTATTAATATAAATATTTTAC
Found at i:60782883 original size:27 final size:26
Alignment explanation
Indices: 60782833--60782884 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
60782823 TTGATTCACA
*
60782833 CAAAATATTAATTATATATATTTTAC
1 CAAAATATTAATTAAATATATTTTAC
60782859 CAAAATTATTAATATAAATAT-TTTTA
1 CAAAA-TATTAAT-TAAATATATTTTA
60782885 ATAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (26 bp):
CAAAATATTAATTAAATATATTTTAC
Found at i:60789257 original size:48 final size:48
Alignment explanation
Indices: 60789103--60789250 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
60789093 ATATATACAC
* * **
60789103 ATCTCATACATATTTCACATTAACCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
60789151 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
60789199 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
60789247 ATCT
1 ATCT
60789251 TGTACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:60790563 original size:26 final size:27
Alignment explanation
Indices: 60790518--60790570 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
60790508 TTAAATTCTG
* *
60790518 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
60790545 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
60790571 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:60796159 original size:20 final size:21
Alignment explanation
Indices: 60796127--60796165 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
60796117 CACTAGGATG
60796127 GTTGAGTTCCGAGCTCGTTGA
1 GTTGAGTTCCGAGCTCGTTGA
*
60796148 GTTGAG-TCCGAGTTCGTT
1 GTTGAGTTCCGAGCTCGTT
60796166 AGATGTAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.18, G:0.33, T:0.36
Consensus pattern (21 bp):
GTTGAGTTCCGAGCTCGTTGA
Found at i:60796246 original size:45 final size:45
Alignment explanation
Indices: 60796135--60796254 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 45
60796125 TGGTTGAGTT
* *
60796135 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTTAGATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCATTAGATGGAACTA-GCA
* *
60796181 TCCGAGCTCATTAAGTTGAGTCCGAGTTCATTATGGATGCGAAC-A-C-
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCATTA--GATG-GAACTAGCA
60796227 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
60796255 GTTTATGGGT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 26 0.41
47 30 0.47
49 5 0.08
50 3 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCATTAGATGGAACTAGCA
Found at i:60798677 original size:27 final size:27
Alignment explanation
Indices: 60798625--60798678 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
60798615 AGGGAATCTA
***
60798625 TTAGAATACGCCACAAAGGCTTTCCTT
1 TTAGAATACGCCACAAAGGAGATCCTT
60798652 TTAGAATACGCCACAAAGGAGATCCTT
1 TTAGAATACGCCACAAAGGAGATCCTT
60798679 AAGACTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (27 bp):
TTAGAATACGCCACAAAGGAGATCCTT
Found at i:60801409 original size:27 final size:27
Alignment explanation
Indices: 60801378--60801555 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60801368 TAAATTGTAC
60801378 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60801405 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60801431 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60801459 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60801487 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60801514 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60801541 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60801556 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60801492 original size:82 final size:81
Alignment explanation
Indices: 60801379--60801534 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60801369 AAATTGTACA
* *
60801379 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60801443 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60801460 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60801525 TGCGAGTTGA
65 TGCGAATTGA
60801535 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60801546 original size:82 final size:81
Alignment explanation
Indices: 60801375--60801555 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60801365 GATTAAATTG
* *
60801375 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60801440 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60801456 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60801520 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60801538 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60801556 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60804147 original size:44 final size:45
Alignment explanation
Indices: 60804082--60804168 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 45
60804072 CAAGTCTACT
*
60804082 AGCAGGGCCTGTTACGGATGCGGTTCGAAGGACCACTTCATTACG
1 AGCAGGGCCTGTTACGCATGCGGTTCGAAGGACCACTTCATTACG
60804127 AGCA-GGCCTGTTACGCATGCGGTTCGAAGGACCACTTCATTA
1 AGCAGGGCCTGTTACGCATGCGGTTCGAAGGACCACTTCATTA
60804169 GAGATTGCAC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 37 0.90
45 4 0.10
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCAGGGCCTGTTACGCATGCGGTTCGAAGGACCACTTCATTACG
Found at i:60809647 original size:27 final size:27
Alignment explanation
Indices: 60809616--60809793 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60809606 TAAATTGTAC
60809616 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60809643 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60809669 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60809697 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60809725 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60809752 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60809779 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60809794 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60809730 original size:82 final size:81
Alignment explanation
Indices: 60809617--60809772 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60809607 AAATTGTACA
* *
60809617 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60809681 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60809698 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60809763 TGCGAGTTGA
65 TGCGAATTGA
60809773 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60809784 original size:82 final size:81
Alignment explanation
Indices: 60809613--60809793 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60809603 GATTAAATTG
* *
60809613 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60809678 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60809694 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60809758 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60809776 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60809794 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60813463 original size:46 final size:46
Alignment explanation
Indices: 60813380--60813502 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 46
60813370 TGAGAGCCTG
*
60813380 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACG-AGCGCTAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGTA-AGCTAA
* * * * *
60813428 TGTGAGACATGTCCGGGACATGCATCGGCCTCGAGATGTAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTAAGCTAA
*
60813474 TGTAAGACATGTCTGGTACATGCATCGGC
1 TGTAAGACATGTCTGGGACATGCATCGGC
60813503 TATGAGTTGA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 45 0.69
47 14 0.22
48 6 0.09
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTAAGCTAA
Found at i:60819183 original size:26 final size:26
Alignment explanation
Indices: 60819154--60819203 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
60819144 CCTCACTCCA
60819154 ATTTTACTCCTC-ATAAAATTTTGATG
1 ATTTTAC-CCTCGATAAAATTTTGATG
60819180 ATTTTACCCTCGATAAAATTTTGA
1 ATTTTACCCTCGATAAAATTTTGA
60819204 GAAAATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTCGATAAAATTTTGATG
Found at i:60825234 original size:40 final size:40
Alignment explanation
Indices: 60825186--60825351 Score: 264
Period size: 40 Copynumber: 4.2 Consensus size: 40
60825176 GGACTAAGAT
*
60825186 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
60825226 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
60825266 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
60825306 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
60825345 CCGAAGG
1 CCGAAGG
60825352 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.13
40 103 0.87
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:60827008 original size:29 final size:29
Alignment explanation
Indices: 60826975--60827100 Score: 164
Period size: 29 Copynumber: 4.4 Consensus size: 29
60826965 GAAAGCATGT
*
60826975 ATATGAATCTAATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
*
60827004 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* * *
60827033 ATACGAATGTGATTTGGGCCTAATGGGCG
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* * *
60827062 ATACGAATG-AAATTGGGCCTAGTGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
*
60827090 ATATGCATGTA
1 ATATGAATGTA
60827101 TGTAGACTTG
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 22 0.26
29 64 0.74
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTAATTTGGGCCTAATGGGCC
Found at i:60834720 original size:28 final size:29
Alignment explanation
Indices: 60834666--60834727 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
60834656 GAAAGCATGT
* *
60834666 ATATGAATGTGATTTGGGCCAAATGGGTC
1 ATATGAATGAGATTTGGGCCAAATGGGCC
* *
60834695 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTGGGCCAAATGGGCC
60834723 ATATG
1 ATATG
60834728 CATGTATGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 18 0.62
29 11 0.38
ACGTcount: A:0.27, C:0.11, G:0.32, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCAAATGGGCC
Found at i:60846958 original size:22 final size:22
Alignment explanation
Indices: 60846932--60846974 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
60846922 ACTATGGATT
60846932 TCGTATTGGGTTTACTCCTATA
1 TCGTATTGGGTTTACTCCTATA
60846954 TCGTATTGGGTTTACTCCTAT
1 TCGTATTGGGTTTACTCCTAT
60846975 CTCCGAGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.47
Consensus pattern (22 bp):
TCGTATTGGGTTTACTCCTATA
Found at i:60851752 original size:21 final size:21
Alignment explanation
Indices: 60851727--60851773 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
60851717 ACATAACCTT
60851727 TCATCTACTTCATATTCAATA
1 TCATCTACTTCATATTCAATA
60851748 TCATCTACTTCATATTCAATA
1 TCATCTACTTCATATTCAATA
60851769 TCATC
1 TCATC
60851774 AACCACATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.43
Consensus pattern (21 bp):
TCATCTACTTCATATTCAATA
Found at i:60851782 original size:21 final size:21
Alignment explanation
Indices: 60851737--60851782 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
60851727 TCATCTACTT
* **
60851737 CATATTCAATATCATCTACTT
1 CATATTCAATATCATCAACCA
60851758 CATATTCAATATCATCAACCA
1 CATATTCAATATCATCAACCA
60851779 CATA
1 CATA
60851783 GGTTCCGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (21 bp):
CATATTCAATATCATCAACCA
Found at i:60856645 original size:13 final size:13
Alignment explanation
Indices: 60856627--60856653 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
60856617 CTAGTACTTT
60856627 TAGTTCCTTTGGG
1 TAGTTCCTTTGGG
60856640 TAGTTCCTTTGGG
1 TAGTTCCTTTGGG
60856653 T
1 T
60856654 TCGACAATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.15, G:0.30, T:0.48
Consensus pattern (13 bp):
TAGTTCCTTTGGG
Found at i:60859897 original size:55 final size:55
Alignment explanation
Indices: 60859827--60859950 Score: 149
Period size: 55 Copynumber: 2.3 Consensus size: 55
60859817 TGATGTGCCA
* * * *
60859827 TGGTTGAGCCTGCCAAAACAACACGGGTGTGCGACACGCCCGTGTGGAAGAACCG
1 TGGTCGAGCCTGCCAAAACAACACGGATGTACGACACGCCCGTGTCGAAGAACCG
* * * * * *
60859882 TGGTCGAGCCTGCCAAAATAGCACGGATGTACGACATGCCCGTGTCTAATACCCG
1 TGGTCGAGCCTGCCAAAACAACACGGATGTACGACACGCCCGTGTCGAAGAACCG
*
60859937 TGGTCGAACCTGCC
1 TGGTCGAGCCTGCC
60859951 CAATTAACAC
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (55 bp):
TGGTCGAGCCTGCCAAAACAACACGGATGTACGACACGCCCGTGTCGAAGAACCG
Found at i:60869869 original size:47 final size:47
Alignment explanation
Indices: 60869817--60870512 Score: 1077
Period size: 47 Copynumber: 14.6 Consensus size: 47
60869807 GATAATTGTG
* *
60869817 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60869864 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60869913 ATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60869960 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60870007 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60870054 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
60870103 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60870152 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60870201 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
60870248 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
60870297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
60870346 ATGTGAAAGTGTATATATCTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60870393 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
60870440 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
60870487 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
60870513 TCCCGAAGGG
Statistics
Matches: 607, Mismatches: 32, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
47 340 0.56
49 257 0.42
51 10 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:60869947 original size:96 final size:96
Alignment explanation
Indices: 60869817--60870512 Score: 1098
Period size: 96 Copynumber: 7.3 Consensus size: 96
60869807 GATAATTGTG
* *
60869817 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
60869882 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* *
60869913 ATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
60869976 ATGTGATAAGGCCTAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
* * *
60870007 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
60870072 ATGTGATAAGGCCTAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
60870103 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
60870168 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
* * *
60870201 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
60870266 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
60870297 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
60870360 ATATCTGATAAGGCCTAATAGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCAATGTGATGA
*
60870393 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
60870456 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCTAATGGCCAATGTGATGA
*
60870487 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
60870513 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 33, Indels: 14
0.92 0.05 0.02
Matches are distributed among these distances:
94 187 0.33
96 236 0.42
98 138 0.25
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCAATGTGATGA
Found at i:60872265 original size:47 final size:47
Alignment explanation
Indices: 60872206--60872335 Score: 197
Period size: 47 Copynumber: 2.8 Consensus size: 47
60872196 GTCCGAATAA
* *
60872206 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTCAAAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
*** *
60872253 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
*
60872300 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
60872336 TATCGATTGT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 76 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAAAGAGAAGT
Found at i:60876113 original size:28 final size:27
Alignment explanation
Indices: 60876073--60876131 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
60876063 CCTAAATAAG
*
60876073 AAAAATAAGCTTAAAGAGGAATAAAA-TA
1 AAAAATAAGCTTAAA-AAG-ATAAAAGTA
60876101 AAAAAT-AGTCTTAAAAAGATAAAAGTA
1 AAAAATAAG-CTTAAAAAGATAAAAGTA
60876128 AAAA
1 AAAA
60876132 CACAATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 10 0.36
28 12 0.43
ACGTcount: A:0.66, C:0.03, G:0.12, T:0.19
Consensus pattern (27 bp):
AAAAATAAGCTTAAAAAGATAAAAGTA
Found at i:60890535 original size:23 final size:23
Alignment explanation
Indices: 60890503--60890550 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
60890493 AAATTTTCAC
*
60890503 ACAATCATTCAATCATACAGTAG
1 ACAATAATTCAATCATACAGTAG
*
60890526 ACAATAATTCAATCATACTGTAG
1 ACAATAATTCAATCATACAGTAG
60890549 AC
1 AC
60890551 CTTAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (23 bp):
ACAATAATTCAATCATACAGTAG
Found at i:60893117 original size:25 final size:25
Alignment explanation
Indices: 60893063--60893146 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
60893053 GTATACTCAT
* * **
60893063 ACGAGTTGTAAATCGATATGCTAAC
1 ACGAGCTGTAAATCGGTATGCTCTC
* * *
60893088 TCGAGCTGTAGATCTGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCTCTC
*
60893113 ACGAGCTATAAATCGGTATGCTCTC
1 ACGAGCTGTAAATCGGTATGCTCTC
*
60893138 ATGAGCTGT
1 ACGAGCTGT
60893147 GGGTCAGAAT
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (25 bp):
ACGAGCTGTAAATCGGTATGCTCTC
Found at i:60896612 original size:3 final size:3
Alignment explanation
Indices: 60896606--60896643 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
60896596 AATAAAATGC
60896606 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
60896644 TTACGTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:60897448 original size:42 final size:41
Alignment explanation
Indices: 60897228--60897440 Score: 284
Period size: 42 Copynumber: 5.1 Consensus size: 41
60897218 CTTCATATAC
*
60897228 AATGCAAGGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAAT-GACCTCCACACCTGGGCCTCTA
* * *
60897270 AATGTAATG-AAAGATAAATGGATCTCCATACCTGGGCCTCTA
1 AATGCAATGAAAAG-TAAAT-GACCTCCACACCTGGGCCTCTA
*
60897312 AATGCAATGAAAAGTAAATCGATCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAAT-GACCTCCACACCTGGGCCTCTA
* *
60897354 AATGCAATGAAAGGTAAATCGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAAT-GACCTCCACACCTGGGCCTCTA
* *
60897396 AATACAATGAAAAGTAAATGAACCTCCACACCTCGGCCTCTA
1 AATGCAATGAAAAGTAAATG-ACCTCCACACCTGGGCCTCTA
60897438 AAT
1 AAT
60897441 ATAATGAATG
Statistics
Matches: 155, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
41 5 0.03
42 146 0.94
43 4 0.03
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (41 bp):
AATGCAATGAAAAGTAAATGACCTCCACACCTGGGCCTCTA
Found at i:60900436 original size:159 final size:159
Alignment explanation
Indices: 60900142--60900468 Score: 429
Period size: 159 Copynumber: 2.1 Consensus size: 159
60900132 TTGTATGGCC
* * *
60900142 CACACGGCCCAAATTGGCCCTGGTCGTGTGGATCATATGGCTTCGCCCAAAAATCCCACACACCC
1 CACACGGCCCAAATTGGCCCTGGCCGTGTGGATCACACGGCTTCGCCCAAAAATCCCACACACCC
* * * * *
60900207 ATGTGGACAACCTGTGTGGGCCCACATGGCACAATTCAGTCCAGCTCGTATGTCGCACACGGCCT
66 ATGTGGACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCT
*
60900272 GCCTCGTCAACCACACGCCCGCGTTACGT
131 ACCTCGTCAACCACACGCCCGCGTTACGT
* * * * *
60900301 CACACGGCCCAAATTGGCCTTGGCCGTGTGGATCACACGGCTTGGCCCAAAAGTCCCACACGCCT
1 CACACGGCCCAAATTGGCCCTGGCCGTGTGGATCACACGGCTTCGCCCAAAAATCCCACACACCC
* * * ** * *
60900366 GTGTGGACTACCCGTATGGGCCCACACGGCCCAATTCAATCTGGTTCATGTGTCGCACACGGCCT
66 ATGTGGACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCT
* * *
60900431 ACCTCGTCGACTACACGCCCGTGTTACGT
131 ACCTCGTCAACCACACGCCCGCGTTACGT
*
60900460 CATACGGCC
1 CACACGGCC
60900469 TACCACACGG
Statistics
Matches: 143, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
159 143 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.20
Consensus pattern (159 bp):
CACACGGCCCAAATTGGCCCTGGCCGTGTGGATCACACGGCTTCGCCCAAAAATCCCACACACCC
ATGTGGACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCT
ACCTCGTCAACCACACGCCCGCGTTACGT
Found at i:60903749 original size:15 final size:16
Alignment explanation
Indices: 60903719--60903749 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60903709 TCACACTTGT
60903719 TCCAACACCACCTCAA
1 TCCAACACCACCTCAA
60903735 TCCAACACC-CCTCAA
1 TCCAACACCACCTCAA
60903750 CAGACACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.35, C:0.52, G:0.00, T:0.13
Consensus pattern (16 bp):
TCCAACACCACCTCAA
Found at i:60911657 original size:13 final size:13
Alignment explanation
Indices: 60911639--60911663 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60911629 GAATTATTTC
60911639 TTGAAAATTTTGT
1 TTGAAAATTTTGT
60911652 TTGAAAATTTTG
1 TTGAAAATTTTG
60911664 ACGTTTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TTGAAAATTTTGT
Found at i:60918762 original size:42 final size:41
Alignment explanation
Indices: 60918684--60918837 Score: 166
Period size: 42 Copynumber: 3.7 Consensus size: 41
60918674 CGAGACTATG
*
60918684 TGTAAGACCATATCTGGGATATGGCATC-ATTATGAGACTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGA-TTTA
*
60918726 TGTAAGACCATATCTGGGATATGGCATCGATGTGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTT-A
* * * * * **
60918768 TGAAAGACCATAGCTAGGCTATTGGAATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAT-TTA
*
60918811 TGTAAGACCATATCTGGGAAATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
60918838 TGGTGTAGTA
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.03
42 56 0.61
43 33 0.36
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTA
Found at i:60918805 original size:43 final size:42
Alignment explanation
Indices: 60918729--60918822 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 42
60918719 GACTTTGTGT
* * * * **
60918729 AAGACCATATCTGGGATATGGCATCGATGTGAGATTTCATGA
1 AAGACCATAGCTAGGATATGGAATCGATATGAGATCCCATGA
* *
60918771 AAGACCATAGCTAGGCTATTGGAATCGATATGAGATCCCATGT
1 AAGACCATAGCTAGGATA-TGGAATCGATATGAGATCCCATGA
60918814 AAGACCATA
1 AAGACCATA
60918823 TCTGGGAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 15 0.35
43 28 0.65
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (42 bp):
AAGACCATAGCTAGGATATGGAATCGATATGAGATCCCATGA
Found at i:60924676 original size:9 final size:9
Alignment explanation
Indices: 60924602--60924869 Score: 86
Period size: 9 Copynumber: 28.4 Consensus size: 9
60924592 TCCAGTCTAA
60924602 TTTA-AATT
1 TTTATAATT
**
60924610 TTTATGTTT
1 TTTATAATT
60924619 TTTATAAGTT
1 TTTATAA-TT
*
60924629 TATATCAATT
1 TTTAT-AATT
*
60924639 TTAATAATT
1 TTTATAATT
60924648 TTTAT-ATT
1 TTTATAATT
**
60924656 TTTATGTTTT
1 TTTAT-AATT
60924666 TTTATAATT
1 TTTATAATT
60924675 TTTATAGAATTTT
1 TTTAT--AA--TT
*
60924688 TTTAATACGTTT
1 TTT-ATA--ATT
*
60924700 TTTATAAAAT
1 TTTAT-AATT
*
60924710 TTTAAATATGT
1 TTTATA-AT-T
60924721 TTTATTAA-T
1 TTTA-TAATT
**
60924730 TTTATTTTT
1 TTTATAATT
60924739 TTTATAATT
1 TTTATAATT
*
60924748 TATTA-GATT
1 T-TTATAATT
* *
60924757 TATTA-GAGT
1 T-TTATAATT
60924766 TTTATAATAT
1 TTTATAAT-T
60924776 TTTAT-ATT
1 TTTATAATT
60924784 TTTATAATT
1 TTTATAATT
*
60924793 TTCATAAGTT
1 TTTATAA-TT
**
60924803 CATATCAATT
1 TTTAT-AATT
*
60924813 TTCAT-ATT
1 TTTATAATT
60924821 TTTA-AATAT
1 TTTATAAT-T
60924830 TTTA-AATAT
1 TTTATAAT-T
* *
60924839 TTGATCATT
1 TTTATAATT
60924848 TTTATAATT
1 TTTATAATT
* *
60924857 TTTGTGATT
1 TTTATAATT
60924866 TTTA
1 TTTA
60924870 ATATTTTATA
Statistics
Matches: 194, Mismatches: 40, Indels: 51
0.68 0.14 0.18
Matches are distributed among these distances:
8 30 0.15
9 92 0.47
10 43 0.22
11 14 0.07
12 8 0.04
13 5 0.03
14 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (9 bp):
TTTATAATT
Found at i:60924850 original size:18 final size:17
Alignment explanation
Indices: 60924829--60924875 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
60924819 TTTTTAAATA
60924829 TTTTAAATATTTGATCAT
1 TTTTAAATATTTG-TCAT
* *
60924847 TTTTATAATTTTTGTGAT
1 TTTTA-AATATTTGTCAT
60924865 TTTT-AATATTT
1 TTTTAAATATTT
60924876 TATAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 6 0.24
18 12 0.48
19 7 0.28
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (17 bp):
TTTTAAATATTTGTCAT
Found at i:60925715 original size:26 final size:27
Alignment explanation
Indices: 60925668--60925724 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
60925658 ATTAAAAGGT
* *
60925668 TAAAAACCAAATTTAATTAAAAATATA
1 TAAAAACCAAATTTAATAAAAAAAATA
* *
60925695 TAAAAACTAAA-TTGATAAAAAAAATA
1 TAAAAACCAAATTTAATAAAAAAAATA
60925721 TAAA
1 TAAA
60925725 CATCGCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (27 bp):
TAAAAACCAAATTTAATAAAAAAAATA
Found at i:60932953 original size:19 final size:19
Alignment explanation
Indices: 60932929--60932971 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
60932919 TTAAATTTTG
60932929 ATTAAAACTAAATTAA-TTA
1 ATTAAAAC-AAATTAATTTA
* *
60932948 ATTAAATCAATTTAATTTA
1 ATTAAAACAAATTAATTTA
60932967 ATTAA
1 ATTAA
60932972 TCGATCGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTAAAACAAATTAATTTA
Found at i:60933063 original size:18 final size:17
Alignment explanation
Indices: 60933040--60933075 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
60933030 CAATTATTGG
60933040 TTAATTTAATTTGAAAGT
1 TTAATTT-ATTTGAAAGT
*
60933058 TTAATTTTTTTGAAAGT
1 TTAATTTATTTGAAAGT
60933075 T
1 T
60933076 CAGTTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (17 bp):
TTAATTTATTTGAAAGT
Found at i:60933246 original size:19 final size:20
Alignment explanation
Indices: 60933208--60933246 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
60933198 TCATATGCAT
*
60933208 AATAATTTTAATAAATATAA
1 AATAATTTTAATAAAAATAA
60933228 AATAATTTT-ATAAAAATAA
1 AATAATTTTAATAAAAATAA
60933247 CATTCTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATTTTAATAAAAATAA
Found at i:60933282 original size:22 final size:24
Alignment explanation
Indices: 60933237--60933282 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
60933227 AAATAATTTT
*
60933237 ATAAAAATAACATTCTTTTGAATA
1 ATAAAAATAACATTCTTTTAAATA
*
60933261 ATAAAAATCACA-T-TTTTAAATA
1 ATAAAAATAACATTCTTTTAAATA
60933283 CAATTAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 11 0.55
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAAAAATAACATTCTTTTAAATA
Found at i:60936379 original size:47 final size:47
Alignment explanation
Indices: 60936326--60936487 Score: 181
Period size: 47 Copynumber: 3.5 Consensus size: 47
60936316 CGGATATTTG
60936326 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
* * * * *
60936373 GGCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGAT-T--CGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATGTAACTA
* *
60936420 -ACGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAA-ATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGT-AAGATGTAACTA
*
60936466 GGCATCCGAACTCATTGAGTTG
1 GGCATCCGAACTCGTTGAGTTG
60936488 TTATGGATGC
Statistics
Matches: 92, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 1 0.01
46 29 0.32
47 50 0.54
49 4 0.04
50 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
Found at i:60953686 original size:39 final size:39
Alignment explanation
Indices: 60953632--60953804 Score: 162
Period size: 40 Copynumber: 4.4 Consensus size: 39
60953622 CAACCAAGTA
**
60953632 CCTTCGGGGTTTAGCCGGATATAGCT-ACTCGTC-CAAATG
1 CCTTCGGGACTTAGCCGGATATAG-TAACTCG-CACAAATG
*
60953671 CCTTCGGGACTTAGCCCGG-TCATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAG-CCGGAT-ATAGTAACTCGCACAAATG
* * *
60953711 CCTTC-GGACTTAACCCGGTTATAGT-ACTCGCACAATTG
1 CCTTCGGGACTT-AGCCGGATATAGTAACTCGCACAAATG
*
60953749 CCTTCGGGACTTAGCCCGGA-ATTAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATA-TAGT-AACTCGCACAAATG
60953789 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
60953805 CGGTTATTAT
Statistics
Matches: 113, Mismatches: 10, Indels: 22
0.78 0.07 0.15
Matches are distributed among these distances:
38 18 0.16
39 45 0.40
40 49 0.43
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:60953712 original size:40 final size:40
Alignment explanation
Indices: 60953665--60953808 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
60953655 GCTACTCGTC
* *
60953665 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
* *
60953705 CAAATGCCTTC-GGACTTAACCCGGTTATAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
* *
60953743 CAATTGCCTTCGGGACTTAGCCCGG-AATTAGTCAA-TAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAA-TAGT-AACTCGCA
60953783 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
60953809 TATTATCGAA
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
38 17 0.19
39 34 0.37
40 39 0.43
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
Found at i:60953762 original size:78 final size:80
Alignment explanation
Indices: 60953646--60953811 Score: 216
Period size: 78 Copynumber: 2.1 Consensus size: 80
60953636 CGGGGTTTAG
* * * *
60953646 CCGGATATAGCTACTCGTCCAAATGCCTTCGGGACTTAGCCCGGTCA-TAGT-AACTCGTACAAA
1 CCGGTTATAGCTACTCGTCCAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCAA-TAGCACAAA
60953709 TGCCTTC-GGACTTAAC
64 TGCCTTCGGGACTTAAC
*
60953725 CCGGTTATAG-TACTCG-CACAATTGCCTTCGGGACTTAGCCCGGAATTAGTCAATAGCACAAAT
1 CCGGTTATAGCTACTCGTC-CAAATGCCTTCGGGACTTAGCCCGGAATTAGTCAATAGCACAAAT
*
60953788 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAAC
60953804 CCGGTTAT
1 CCGGTTAT
60953812 TATCGAATAT
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
77 2 0.03
78 48 0.62
79 27 0.35
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
CCGGTTATAGCTACTCGTCCAAATGCCTTCGGGACTTAGCCCGGAATTAGTCAATAGCACAAATG
CCTTCGGGACTTAAC
Found at i:60956186 original size:22 final size:22
Alignment explanation
Indices: 60956159--60956205 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
60956149 GCAGCAAGGG
*
60956159 GTGTCCCTAGGGTCACACGGG-T
1 GTGTCCCT-GGGACACACGGGCT
*
60956181 GTGTCCCTTGGACACACGGGCT
1 GTGTCCCTGGGACACACGGGCT
60956203 GTG
1 GTG
60956206 AGCCTTGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.13, C:0.28, G:0.36, T:0.23
Consensus pattern (22 bp):
GTGTCCCTGGGACACACGGGCT
Found at i:60956211 original size:22 final size:21
Alignment explanation
Indices: 60956172--60956212 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
60956162 TCCCTAGGGT
*
60956172 CACACGGGTGTGTCCCTTGGA
1 CACACGGGTGTGACCCTTGGA
*
60956193 CACACGGGCTGTGAGCCTTG
1 CACACGGG-TGTGACCCTTG
60956213 TAACTTGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.15, C:0.29, G:0.34, T:0.22
Consensus pattern (21 bp):
CACACGGGTGTGACCCTTGGA
Found at i:60968768 original size:68 final size:68
Alignment explanation
Indices: 60968674--60968831 Score: 298
Period size: 68 Copynumber: 2.3 Consensus size: 68
60968664 TTCACTTGGA
* *
60968674 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
60968739 CGT
66 CGT
60968742 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
60968807 CGT
66 CGT
60968810 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
60968832 TATATAGTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
CGT
Found at i:60972614 original size:3 final size:3
Alignment explanation
Indices: 60972601--60972632 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
60972591 TTGATTTCAT
60972601 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
60972633 ATAATTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:60978521 original size:29 final size:29
Alignment explanation
Indices: 60978489--60978568 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
60978479 AAGCTGGGGA
* **
60978489 GCTCCATCTAGCGAGCATGAAGATGGTGG
1 GCTCCATCTGGCGAGCATGAAGATGGCAG
* * *
60978518 GCTCCATCCGGTGAACATGAAGATGGCAG
1 GCTCCATCTGGCGAGCATGAAGATGGCAG
*
60978547 ACTCCATCTGGCGAGTCATGAA
1 GCTCCATCTGGCGAG-CATGAA
60978569 CTAGGTCACG
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 34 0.85
30 6 0.15
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (29 bp):
GCTCCATCTGGCGAGCATGAAGATGGCAG
Found at i:60983638 original size:20 final size:20
Alignment explanation
Indices: 60983592--60983640 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
60983582 TTAACCATCG
60983592 ATCTGGTATTGATATATTTT
1 ATCTGGTATTGATATATTTT
*
60983612 ATTTGGTATTGATA-ATTTT
1 ATCTGGTATTGATATATTTT
60983631 ATCCTGGTAT
1 AT-CTGGTAT
60983641 CGATTTTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.24, C:0.06, G:0.16, T:0.53
Consensus pattern (20 bp):
ATCTGGTATTGATATATTTT
Found at i:60985062 original size:14 final size:16
Alignment explanation
Indices: 60985033--60985066 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
60985023 AATGAAGGGA
60985033 TTGAGTAAGAAAAAAG
1 TTGAGTAAGAAAAAAG
*
60985049 TTGAG-AAGAAAAAGG
1 TTGAGTAAGAAAAAAG
60985064 TTG
1 TTG
60985067 GTGTTACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (16 bp):
TTGAGTAAGAAAAAAG
Found at i:60985081 original size:35 final size:35
Alignment explanation
Indices: 60985042--60985110 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
60985032 ATTGAGTAAG
60985042 AAAAAAGTTGAGAAGAAAAAGGTTGGTGTTACTCA
1 AAAAAAGTTGAGAAGAAAAAGGTTGGTGTTACTCA
60985077 AAAAAAGTTGAGAAGAAAAAGGTTGGTGTTACTC
1 AAAAAAGTTGAGAAGAAAAAGGTTGGTGTTACTC
60985111 TTAAATCCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.45, C:0.06, G:0.26, T:0.23
Consensus pattern (35 bp):
AAAAAAGTTGAGAAGAAAAAGGTTGGTGTTACTCA
Found at i:60995338 original size:27 final size:27
Alignment explanation
Indices: 60995290--60995448 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
60995280 GCGAGGATGC
* *
60995290 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
60995317 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
60995343 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
60995370 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
60995397 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
60995424 CAAATAATTGTGGCATAACCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
60995449 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:60995383 original size:54 final size:54
Alignment explanation
Indices: 60995308--60995448 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
60995298 GTGACGAAGT
*
60995308 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
60995362 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
60995416 CACCAGATCAAATAATTGTGGCATAACCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
60995449 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:60997063 original size:26 final size:26
Alignment explanation
Indices: 60997032--60997139 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
60997022 TGAAATGCCC
*
60997032 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
60997058 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
60997084 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
60997110 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
60997136 ATCA
1 ATCA
60997140 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:61002298 original size:68 final size:68
Alignment explanation
Indices: 61002171--61002317 Score: 190
Period size: 68 Copynumber: 2.2 Consensus size: 68
61002161 AATCAACAGC
* * *
61002171 TTCGAACAGCTACATTTACTAAATAAAACAGCATATATTGTAGTGCATCGAAAAATGAATTTAAC
1 TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTAGTGCATCGAAAAATGAATATAAC
61002236 ACA
66 ACA
* * * * *
61002239 TTCGGACAGCTACATTTACCAAATAAAACAGCATAAA-TG-ATGATGCTTTGAATAGTGAATATA
1 TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTA-G-TGCATCGAAAAATGAATATA
61002302 ACACA
64 ACACA
61002307 TTCGAACAGCT
1 TTCGAACAGCT
61002318 TAATTTTAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
66 1 0.01
67 3 0.04
68 64 0.94
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (68 bp):
TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTAGTGCATCGAAAAATGAATATAAC
ACA
Found at i:61004709 original size:57 final size:58
Alignment explanation
Indices: 61004635--61004744 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 58
61004625 TGCCCACCGG
** *
61004635 CCGATCTCGCATTCATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTA
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
* *
61004692 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC
61004745 TAATCATTCG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 27 0.57
58 20 0.43
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (58 bp):
CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
Found at i:61004768 original size:54 final size:56
Alignment explanation
Indices: 61004636--61004768 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 56
61004626 GCCCACCGGC
** *
61004636 CGATCTCGCATTCATAGTGCTCGGTTGAAGAACTCGCACACACAGTGCCTCAATTA
1 CGATCTCGCACACATAGTGCTCGGTTAAAGAACTCGCACACACAGTGCCTCAATTA
* *
61004692 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTCTAA-T-
1 -CGATCTCGCACACATAGTGCTCGGTTAAA-GAACTCGCACACACAGTGCCTC-AATTA
*
61004749 C-AT-TCGCACACATAATGCTC
1 CGATCTCGCACACATAGTGCTC
61004769 ATATTCATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
54 16 0.24
55 2 0.03
56 1 0.01
57 26 0.38
58 21 0.31
59 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (56 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGAACTCGCACACACAGTGCCTCAATTA
Found at i:61004961 original size:43 final size:43
Alignment explanation
Indices: 61004913--61005029 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 43
61004903 CGGCATTATG
* * *
61004913 CTAGGCACGAAGACCCGAATACACATCACTGGCACGAAGCCTA
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61004956 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61004999 CTAGGCACAAAGGCCCGAATACACATCACCG
1 CTAGGCACGAAGGCCCGAATACACATCACCG
61005030 AGTTTCATGC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.34, C:0.34, G:0.21, T:0.10
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
Found at i:61007120 original size:68 final size:68
Alignment explanation
Indices: 61006993--61007139 Score: 190
Period size: 68 Copynumber: 2.2 Consensus size: 68
61006983 AATCGACAGC
* * *
61006993 TTCGAACAGCTACATTTACTAAATAAAACAGCATATATTGTAGTGCATCGAACAATGAATTTAAC
1 TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTAGTGCATCGAACAATGAATCTAAC
61007058 ACA
66 ACA
* * * * *
61007061 TTCGGACAGCTACATTTACCAAATAAAACAGCATAAA-TG-ATGATGCTTTGAATAGTGAATCTA
1 TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTA-G-TGCATCGAACAATGAATCTA
61007124 ACACA
64 ACACA
61007129 TTCGAACAGCT
1 TTCGAACAGCT
61007140 TAATTTTAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
66 1 0.01
67 3 0.04
68 64 0.94
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (68 bp):
TTCGAACAGCTACATTTACCAAATAAAACAGCATAAATTGTAGTGCATCGAACAATGAATCTAAC
ACA
Found at i:61009491 original size:28 final size:28
Alignment explanation
Indices: 61009460--61009539 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
61009450 ACTGGCCGAT
*
61009460 CTCGCATACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* ** * *
61009488 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
61009517 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
61009540 AAGGAATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
28 20 0.49
29 21 0.51
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:61009528 original size:57 final size:58
Alignment explanation
Indices: 61009455--61009564 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 58
61009445 TGCCCACTGG
* *
61009455 CCGATCTCGCATACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTA
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
* *
61009512 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC
61009565 TAATCATTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 28 0.58
58 20 0.42
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (58 bp):
CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
Found at i:61009781 original size:43 final size:43
Alignment explanation
Indices: 61009733--61009849 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 43
61009723 CGGCATTATG
* * *
61009733 CTAGGCACGAAGACCCGAATACACATCACTGGCACGAAGCCTA
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61009776 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61009819 CTAGGCACAAAGGCCCGAATACACATCACCG
1 CTAGGCACGAAGGCCCGAATACACATCACCG
61009850 AGTTTCATGC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.34, C:0.34, G:0.21, T:0.10
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
Found at i:61014320 original size:28 final size:28
Alignment explanation
Indices: 61014289--61014368 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
61014279 ACTGGCCGAT
*
61014289 CTCGCATACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* ** * *
61014317 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
61014346 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
61014369 AAGGAATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
28 20 0.49
29 21 0.51
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:61014357 original size:57 final size:58
Alignment explanation
Indices: 61014284--61014393 Score: 177
Period size: 57 Copynumber: 1.9 Consensus size: 58
61014274 TGCCCACTGG
* *
61014284 CCGATCTCGCATACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTA
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
* *
61014341 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC
61014394 TAATCATTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 28 0.58
58 20 0.42
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (58 bp):
CCGATCTCGCACACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
Found at i:61014610 original size:43 final size:43
Alignment explanation
Indices: 61014562--61014678 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 43
61014552 CGGCATTATG
* * *
61014562 CTAGGCACGAAGACCCGAATACACATCACTGGCACGAAGCCTA
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61014605 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
*
61014648 CTAGGCACAAAGGCCCGAATACACATCACCG
1 CTAGGCACGAAGGCCCGAATACACATCACCG
61014679 AGTTTCATGC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.34, C:0.34, G:0.21, T:0.10
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGCCTA
Found at i:61016768 original size:68 final size:68
Alignment explanation
Indices: 61016631--61016787 Score: 194
Period size: 68 Copynumber: 2.3 Consensus size: 68
61016621 TTAACTGTGA
* * *
61016631 AATC-AACAGATTCGGACAGCTACATTTACTAAATAAAACAGCATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATATAAGGTAGTGCATCGAACA
61016695 ATG
66 ATG
* * *
61016698 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATA-AAGG-ATGATGCTTTGAA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATATAAGGTA-G-TGCATCGAA
* *
61016761 TAGTG
64 CAATG
*
61016766 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
61016788 TAATTTTAAG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
66 1 0.01
67 7 0.09
68 69 0.90
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATATAAGGTAGTGCATCGAACA
ATG
Found at i:61019134 original size:27 final size:28
Alignment explanation
Indices: 61019104--61019182 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
61019094 ACTGGCCGAT
61019104 CTCGCA-ACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* ** * *
61019131 CTCGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
61019160 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
61019183 AAGGAATTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
27 6 0.15
28 14 0.34
29 21 0.51
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:61019171 original size:57 final size:57
Alignment explanation
Indices: 61019099--61019207 Score: 166
Period size: 58 Copynumber: 1.9 Consensus size: 57
61019089 TGCCCACTGG
*
61019099 CCGATCTCGCAACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTA
1 CCGATCTCGCAACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
* * *
61019155 CCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCATACACAGTGCCTC
1 CCGATCTCGCA-ACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTC
61019208 TAATCATTCG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
56 11 0.23
57 17 0.36
58 19 0.40
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (57 bp):
CCGATCTCGCAACATAGTGCTCGGTTAAAGGAACTCGCACACACAGTGCCTCAATTA
Found at i:61019424 original size:43 final size:43
Alignment explanation
Indices: 61019389--61019492 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
61019379 GGCACTAATA
* * *
61019389 CCCGAATACACATCACTGGCACGAAGCCTACTAGGCACGAAGG
1 CCCGAATACACATCACCGGCACAAAGCCTACTAGGCACAAAGG
*
61019432 CCCGAATACACATCACCGGCACAAAGCCTGCTAGGCACAAAGG
1 CCCGAATACACATCACCGGCACAAAGCCTACTAGGCACAAAGG
61019475 CCCGAATACACATCACCG
1 CCCGAATACACATCACCG
61019493 AGTTTCATGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.34, C:0.36, G:0.20, T:0.11
Consensus pattern (43 bp):
CCCGAATACACATCACCGGCACAAAGCCTACTAGGCACAAAGG
Found at i:61021590 original size:68 final size:68
Alignment explanation
Indices: 61021453--61021600 Score: 192
Period size: 68 Copynumber: 2.2 Consensus size: 68
61021443 TTAACTGTGA
* * * *
61021453 AATC-AACAGATTCGGACAGCTACATTTACTAAATAAAACAGCATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
61021517 ATG
66 ATG
* * * *
61021520 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAG-TGCATCGAAC
*
61021584 AGTG
65 AATG
61021588 AATCTAACACATT
1 AATCTAACACATT
61021601 TGAATAGCTT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
67 4 0.06
68 65 0.94
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
ATG
Found at i:61025254 original size:40 final size:40
Alignment explanation
Indices: 61025209--61025400 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
61025199 ATAACCACAA
* * *
61025209 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
61025249 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
61025289 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
61025329 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
61025369 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
61025401 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:61025293 original size:80 final size:80
Alignment explanation
Indices: 61025180--61025399 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
61025170 ACCCAAGTTT
* * * * * * * * *
61025180 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
61025243 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
61025259 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
61025323 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
61025339 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
61025400 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:61037648 original size:40 final size:40
Alignment explanation
Indices: 61037601--61037746 Score: 213
Period size: 40 Copynumber: 3.6 Consensus size: 40
61037591 GCTACTCGTC
* *
61037601 CAAATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
* *
61037641 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
* * *
61037681 CAATTGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAA-TAGTAACTCGCA
61037721 CAAATGCCTTCGGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGT
61037747 TATTATCCGA
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.99
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTCGCA
Found at i:61041467 original size:43 final size:43
Alignment explanation
Indices: 61041419--61041522 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
61041409 ACCGAGATGA
* * *
61041419 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTTAAT-T
1 GATTACATGTAAGACCATGTCCAGGACAGTGGCATCGAT-ATGT
* * * *
61041462 GATTACGTGTAAGACCCTGTCCGGGATAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCCAGGACAGTGGCATCGATATGT
*
61041505 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
61041523 ATTTGGGATA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 2 0.04
43 48 0.96
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCCAGGACAGTGGCATCGATATGT
Found at i:61060108 original size:26 final size:26
Alignment explanation
Indices: 61060052--61060108 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
61060042 TTTTATTATT
61060052 ATTAACCTTTAATTATTAAATACCAAA
1 ATTAACCTTTAATTA-TAAATACCAAA
61060079 ATTAACCTTTTAATTA-AACA-ACCAAA
1 ATTAACC-TTTAATTATAA-ATACCAAA
61060105 ATTA
1 ATTA
61060109 CTTAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 12 0.43
27 8 0.29
28 8 0.29
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (26 bp):
ATTAACCTTTAATTATAAATACCAAA
Found at i:61065588 original size:22 final size:23
Alignment explanation
Indices: 61065532--61065634 Score: 115
Period size: 22 Copynumber: 4.6 Consensus size: 23
61065522 CTGAGCTGAT
*
61065532 AAACTGTAAGCTCTAAT-GAGCTG
1 AAACAGTAAGCTCT-ATCGAGCTG
*
61065555 AAACGGTAAGCTCTATCGAGCTG
1 AAACAGTAAGCTCTATCGAGCTG
*
61065578 -AACAGTAAGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATCGAGCTG
*
61065600 -AACAATAAGCTC-ATACGAGCTG
1 AAACAGTAAGCTCTAT-CGAGCTG
*
61065622 AAACGGTAAGCTC
1 AAACAGTAAGCTC
61065635 CAATGAGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
21 2 0.03
22 39 0.56
23 29 0.41
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (23 bp):
AAACAGTAAGCTCTATCGAGCTG
Found at i:61065588 original size:45 final size:45
Alignment explanation
Indices: 61065532--61065643 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
61065522 CTGAGCTGAT
* **
61065532 AAACTGTAAGCTCTAATGAGCTGAAACGGTAAGCTC-TATCGAGCTG
1 AAACAGTAAGCTCTAATGAGCTG-AACAATAAGCTCATA-CGAGCTG
*
61065578 -AACAGTAAGCTCTATTGAGCTGAACAATAAGCTCATACGAGCTG
1 AAACAGTAAGCTCTAATGAGCTGAACAATAAGCTCATACGAGCTG
* *
61065622 AAACGGTAAGCTCCAATGAGCT
1 AAACAGTAAGCTCTAATGAGCT
61065644 AAAAATAGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 17 0.30
45 40 0.70
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (45 bp):
AAACAGTAAGCTCTAATGAGCTGAACAATAAGCTCATACGAGCTG
Found at i:61068848 original size:27 final size:26
Alignment explanation
Indices: 61068817--61068927 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
61068807 CACCTGGTTT
* * *
61068817 GTAAAATTACCGAAATACCCTGGTAGT
1 GTAAAATAACCGTAATACCCT-GTAGG
* * *
61068844 GTAAAATGACCGTACTACCCTTTTAGG
1 GTAAAATAACCGTAATACCC-TGTAGG
*
61068871 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATAACCGTAAT-ACCCTGTAGG
* *
61068898 GTGAAATAACCGTAATACCCCTGTATG
1 GTAAAATAACCGTAATA-CCCTGTAGG
61068925 GTA
1 GTA
61068928 GAATGACGAT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
27 64 0.94
28 4 0.06
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (26 bp):
GTAAAATAACCGTAATACCCTGTAGG
Found at i:61072674 original size:27 final size:27
Alignment explanation
Indices: 61072635--61072840 Score: 209
Period size: 27 Copynumber: 7.6 Consensus size: 27
61072625 CCCGGATTGT
* * *
61072635 AAAATTATCGAAATACTCTC-GATTTGT
1 AAAATTATTGAAATACCCTCAG-TTTGG
* *
61072662 AAAAGTATTGAAATACCCCCAGTTTGG
1 AAAATTATTGAAATACCCTCAGTTTGG
* * *
61072689 AAAATTATTGAAATACCCTCGGTTCGT
1 AAAATTATTGAAATACCCTCAGTTTGG
*** * *
61072716 AAAATTACCAAAATACCCTCAATTTAG
1 AAAATTATTGAAATACCCTCAGTTTGG
61072743 AAAATTATTGAAATACCCTCAGTTTGG
1 AAAATTATTGAAATACCCTCAGTTTGG
* **
61072770 AAAATTATAGAAATACTTTCAGTTTGG
1 AAAATTATTGAAATACCCTCAGTTTGG
*
61072797 AAAATTACTGAAATACCC-CTAGTTTGG
1 AAAATTATTGAAATACCCTC-AGTTTGG
* *
61072824 AAAATTACTGAAGTACC
1 AAAATTATTGAAATACC
61072841 TCCAATTTGA
Statistics
Matches: 146, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (27 bp):
AAAATTATTGAAATACCCTCAGTTTGG
Found at i:61072768 original size:81 final size:80
Alignment explanation
Indices: 61072633--61072896 Score: 239
Period size: 81 Copynumber: 3.3 Consensus size: 80
61072623 ACCCCGGATT
* * * * * * *
61072633 GTAAAATTATCGAAATACTCTCGATTTGTAAAAGTATTGAAATACCCCCAGTTTGGAAAATTATT
1 GTAAAATTACCAAAATACCCTCAATTTG-AAAATTATTGAAATACCCTCAGTTTGGAAAATTATA
*
61072698 GAAATACCCTCGGTTC
65 GAAATACCTTCGGTTC
61072714 GTAAAATTACCAAAATACCCTCAATTTAGAAAATTATTGAAATACCCTCAGTTTGGAAAATTATA
1 GTAAAATTACCAAAATACCCTCAATTT-GAAAATTATTGAAATACCCTCAGTTTGGAAAATTATA
* * *
61072779 GAAATACTTTCAGTTT
65 GAAATACCTTCGGTTC
* ** * * * *
61072795 GGAAAATTACTGAAATACCC-CTAGTTTGGAAAATTACTGAAGTA-CCTCCAATTT-GAAAAGTT
1 GTAAAATTACCAAAATACCCTC-AATTT-GAAAATTATTGAAATACCCT-CAGTTTGGAAAA-TT
** *
61072857 ACCGAAATA-CTTCAGATTC
62 ATAGAAATACCTTC-GGTTC
*
61072876 GTAAAATTATCAAAATACCCT
1 GTAAAATTACCAAAATACCCT
61072897 GATAGTGTAA
Statistics
Matches: 148, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
80 12 0.08
81 135 0.91
82 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.31
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCTCAATTTGAAAATTATTGAAATACCCTCAGTTTGGAAAATTATAG
AAATACCTTCGGTTC
Done.