Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 187 of 362
Found at i:62084598 original size:25 final size:26
Alignment explanation
Indices: 62084570--62084624 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
62084560 TTAATTTATG
62084570 TTATATT-ATAACATATATTAA-CATA
1 TTATATTAATAACATAT-TTAACCATA
* *
62084595 TTAT-TTAATTACATATTTAACCTTA
1 TTATATTAATAACATATTTAACCATA
62084620 TTATA
1 TTATA
62084625 AAATATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (26 bp):
TTATATTAATAACATATTTAACCATA
Found at i:62088218 original size:31 final size:31
Alignment explanation
Indices: 62088183--62088245 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
62088173 GGAGTATAAA
62088183 TGCTTGAGAAATGCTTTGATGAAATATGATT
1 TGCTTGAGAAATGCTTTGATGAAATATGATT
*
62088214 TGCTTGAGAAATGCTTTGATGAAGTATGATT
1 TGCTTGAGAAATGCTTTGATGAAATATGATT
62088245 T
1 T
62088246 TAGAAGTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.40
Consensus pattern (31 bp):
TGCTTGAGAAATGCTTTGATGAAATATGATT
Found at i:62101169 original size:42 final size:41
Alignment explanation
Indices: 62101109--62101251 Score: 198
Period size: 42 Copynumber: 3.4 Consensus size: 41
62101099 CATGCAAGGG
* *
62101109 ACACATAGTC-AGACCACACGCCCATGCGACAGACCGTGCGTC
1 ACACACAGTCTAGA-CACACGCCCATG-GGCAGACCGTGCGTC
62101151 ACACACAGTCTAGACACACGCCCATGTGGCAGACCGTGCGTC
1 ACACACAGTCTAGACACACGCCCATG-GGCAGACCGTGCGTC
* *
62101193 ACACACAGTCTAGACACACGCCCATAGGGTAGACCGTGTGTC
1 ACACACAGTCTAGACACACGCCCAT-GGGCAGACCGTGCGTC
*
62101235 ACACACGGTCTAGACAC
1 ACACACAGTCTAGACAC
62101252 CCGTGTGGAC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 89 0.96
43 4 0.04
ACGTcount: A:0.29, C:0.35, G:0.22, T:0.14
Consensus pattern (41 bp):
ACACACAGTCTAGACACACGCCCATGGGCAGACCGTGCGTC
Found at i:62109464 original size:39 final size:40
Alignment explanation
Indices: 62109295--62109498 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
62109285 TGGATGATAA
* * *
62109295 CGAAGGCATTTGTGCTAGTGACTA-ATTCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
62109335 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
62109375 TGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
62109415 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
62109454 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
62109493 CGAAGG
1 CGAAGG
62109499 TACTTGGTTT
Statistics
Matches: 149, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 5 0.03
39 37 0.25
40 106 0.71
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:62117803 original size:39 final size:40
Alignment explanation
Indices: 62117564--62117807 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
62117554 TGGATGATAA
* *
62117564 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
*
62117604 CGAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
62117644 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
62117684 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
62117724 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
62117763 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
62117802 CGAAGG
1 CGAAGG
62117808 TACTTGGTTT
Statistics
Matches: 190, Mismatches: 11, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
38 5 0.03
39 37 0.19
40 147 0.77
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:62123059 original size:19 final size:20
Alignment explanation
Indices: 62123035--62123072 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
62123025 GAGTCTTAAA
*
62123035 ATAAAATAA-AAGTAAAAGC
1 ATAAAATAATAAATAAAAGC
62123054 ATAAAATAATAAATAAAAG
1 ATAAAATAATAAATAAAAG
62123073 TTTTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
ATAAAATAATAAATAAAAGC
Found at i:62127283 original size:83 final size:83
Alignment explanation
Indices: 62127144--62127310 Score: 280
Period size: 83 Copynumber: 2.0 Consensus size: 83
62127134 TGTTATTCAA
* * *
62127144 GAGTTCTACTTAATTAGAGAACATGGTGACCGATTCAAAGTTATAAACACCAGCTATTTTCGTTG
1 GAGTTCTACCTAATTAGAGAACATGGTGACCAAATCAAAGTTATAAACACCAGCTATTTTCGTTG
*
62127209 GCTTTGTCCTCATGACTT
66 GCTTTGACCTCATGACTT
* *
62127227 GAGTTCTACCTAATTAGAGAGCATGGTGACCAAATCAACGTTATAAACACCAGCTATTTTCGTTG
1 GAGTTCTACCTAATTAGAGAACATGGTGACCAAATCAAAGTTATAAACACCAGCTATTTTCGTTG
62127292 GCTTTGACCTCATGACTT
66 GCTTTGACCTCATGACTT
62127310 G
1 G
62127311 CCACTGATAG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
GAGTTCTACCTAATTAGAGAACATGGTGACCAAATCAAAGTTATAAACACCAGCTATTTTCGTTG
GCTTTGACCTCATGACTT
Found at i:62135324 original size:19 final size:19
Alignment explanation
Indices: 62135296--62135334 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
62135286 AAAATGAAAG
62135296 AAACAAG-AAATAGGCCAA
1 AAACAAGAAAATAGGCCAA
*
62135314 AAACAAAGAAAATGGGCCAA
1 AAAC-AAGAAAATAGGCCAA
62135334 A
1 A
62135335 GTACAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.62, C:0.15, G:0.18, T:0.05
Consensus pattern (19 bp):
AAACAAGAAAATAGGCCAA
Found at i:62141690 original size:27 final size:26
Alignment explanation
Indices: 62141653--62141739 Score: 120
Period size: 27 Copynumber: 3.3 Consensus size: 26
62141643 AGCATGGCTG
* * *
62141653 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
62141679 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
62141706 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
62141733 CCAGAAC
1 CCAGAAC
62141740 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.22
27 42 0.78
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:62142180 original size:8 final size:8
Alignment explanation
Indices: 62142154--62142183 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
62142144 CAAAATGCCA
62142154 GCTTTTCG
1 GCTTTTCG
*
62142162 GCATTTCG
1 GCTTTTCG
62142170 GCTTTTCG
1 GCTTTTCG
62142178 GCTTTT
1 GCTTTT
62142184 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:62145531 original size:28 final size:27
Alignment explanation
Indices: 62145439--62145548 Score: 116
Period size: 27 Copynumber: 4.0 Consensus size: 27
62145429 TGGCTGCTAG
* *
62145439 AACAGATATTGTGACAGAGTCACCAGA
1 AACAGATATTGTGGCAGAGCCACCAGA
* * *
62145466 TACAGATATTGTGGAAGA-CCTATCAG-
1 AACAGATATTGTGGCAGAGCC-ACCAGA
* *
62145492 AATAGATATTTGTTGCAGAGCCACCAGA
1 AACAGATA-TTGTGGCAGAGCCACCAGA
62145520 AACAGATATTTGTGGCAGAGCCACCAGA
1 AACAGATA-TTGTGGCAGAGCCACCAGA
62145548 A
1 A
62145549 CGATTCCTCC
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 7 0.10
27 31 0.46
28 29 0.43
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (27 bp):
AACAGATATTGTGGCAGAGCCACCAGA
Found at i:62145681 original size:26 final size:26
Alignment explanation
Indices: 62145652--62145714 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
62145642 AAAATTAACC
*
62145652 CTAGGGGTATAATGGTAATTTTGAAA
1 CTAGGGGTATAATGGTAATTTTCAAA
*
62145678 CTAGGGGTATAATGGTAATTTTCATA
1 CTAGGGGTATAATGGTAATTTTCAAA
62145704 CTTAGGGGTAT
1 C-TAGGGGTAT
62145715 TTTAGTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 25 0.74
27 9 0.26
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
CTAGGGGTATAATGGTAATTTTCAAA
Found at i:62145722 original size:27 final size:26
Alignment explanation
Indices: 62145652--62145725 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 26
62145642 AAAATTAACC
* *
62145652 CTAGGGGTATAATGGTAATTTTGAAA
1 CTAGGGGTATAATAGTAATTTTCAAA
* *
62145678 CTAGGGGTATAATGGTAATTTTCATA
1 CTAGGGGTATAATAGTAATTTTCAAA
**
62145704 CTTAGGGGTATTTTAGTAATTT
1 C-TAGGGGTATAATAGTAATTT
62145726 AACTATTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 25 0.60
27 17 0.40
ACGTcount: A:0.30, C:0.05, G:0.24, T:0.41
Consensus pattern (26 bp):
CTAGGGGTATAATAGTAATTTTCAAA
Found at i:62146827 original size:8 final size:10
Alignment explanation
Indices: 62146801--62146828 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
62146791 AGAAAATAGA
62146801 AGAAGAGAGG
1 AGAAGAGAGG
62146811 AGAAGAGAGG
1 AGAAGAGAGG
62146821 AGAAGAGA
1 AGAAGAGA
62146829 AGGAAGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (10 bp):
AGAAGAGAGG
Found at i:62155004 original size:19 final size:19
Alignment explanation
Indices: 62154976--62155012 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
62154966 AAGATAGAAA
*
62154976 TCCTACTCTAATTAAAACT
1 TCCTAATCTAATTAAAACT
62154995 TCCTAATCTAATTAAAAC
1 TCCTAATCTAATTAAAAC
62155013 CCAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (19 bp):
TCCTAATCTAATTAAAACT
Found at i:62156198 original size:12 final size:12
Alignment explanation
Indices: 62156181--62156206 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62156171 CCGAAGCTTT
62156181 TCTTTTCTCTTC
1 TCTTTTCTCTTC
62156193 TCTTTTCTCTTC
1 TCTTTTCTCTTC
62156205 TC
1 TC
62156207 CATAATTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTTTCTCTTC
Found at i:62158530 original size:46 final size:48
Alignment explanation
Indices: 62158346--62158618 Score: 220
Period size: 47 Copynumber: 5.7 Consensus size: 48
62158336 TAAGGTGCCA
* * ** *
62158346 ATGCCATGTCCCATACATGGTCTTACAC-AGGCTATCATCTTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTA-GCTCTTGTC-TCAAGGCCG
* **
62158395 ATGCCATGTCCCGGACATGGTCTTACACTAGCTC-TCACAT-AACTGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTC-TCAA--G-GCCG
* *
62158445 ATGCCATGTCCCAAACATGGTCTTACACTGGCT-TATGTCTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-TGTCTCAAGGCCG
* * *
62158493 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTTGTCTCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAAGGCCG
* * * ** * *** *
62158539 ATGCCATGTCCTAGACATGGTCTTACTCTGGCTCTCATATTGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAAGGCCG
62158587 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
62158619 ACATAAGTGA
Statistics
Matches: 182, Mismatches: 32, Indels: 23
0.77 0.14 0.10
Matches are distributed among these distances:
46 39 0.21
47 41 0.23
48 31 0.17
49 31 0.17
50 36 0.20
51 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTCTCAAGGCCG
Found at i:62158557 original size:94 final size:95
Alignment explanation
Indices: 62158340--62158623 Score: 305
Period size: 94 Copynumber: 3.0 Consensus size: 95
62158330 CATGGGTAAG
* * *
62158340 GTGCCAATGCCATGTCCCATACATGGTCTTACACAGGC-TATCATCTTCGAGGCCGATGCCATGT
1 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTAT-ATC-TCGAGGCCGATG-CATGT
* *
62158404 CCCGGACATGGTCTTACACTAGCTCTCACATAACT
63 CCCAGACAT-GTCTTACACTAGCACTCACAT-ACT
* *
62158439 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTATGTCTCAAGGCCGATGCATGTCCC
1 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTATATCTCGAGGCCGATGCATGTCCC
**
62158504 AGACATGTCTTACACTAGCACT--TGT-CT
66 AGACATGTCTTACACTAGCACTCACATACT
* * * * *
62158531 CGATGCCGATGCCATGTCCTAGACATGGTCTTACTCTGGCTCTCATAT-T-GTGGCTGATGCATG
1 -G-TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCT-T-ATATCTCGAGGCCGATGCATG
62158594 TCCCAGACATGTCTTACACTAG--CTCACATA
62 TCCCAGACATGTCTTACACTAGCACTCACATA
62158624 AGTGACCCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
92 4 0.03
93 1 0.01
94 70 0.44
95 2 0.01
96 18 0.11
97 13 0.08
98 11 0.07
99 37 0.23
100 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTTATATCTCGAGGCCGATGCATGTCCC
AGACATGTCTTACACTAGCACTCACATACT
Found at i:62158979 original size:30 final size:30
Alignment explanation
Indices: 62158938--62158995 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
62158928 AAATTTACAC
*
62158938 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTGCCCCTAGA
62158968 CTTTGGCAAAATGACCATTTTGCCCCTA
1 CTTTGGCAAAATGACCATTTTGCCCCTA
62158996 TGCTCGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTGCCCCTAGA
Found at i:62166137 original size:93 final size:93
Alignment explanation
Indices: 62165922--62166192 Score: 243
Period size: 93 Copynumber: 2.8 Consensus size: 93
62165912 GTAAGGTGCC
* * *
62165922 GATGCCATGTCCCAGACATGGTCTTACATTGGC-TATCATCTTCGAAGCCAATGCCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTTA-CATC-TCGAGGCCGATG-CATGT-CCAG
*
62165986 ACATGGTATTACACTAG-ATCTCACATAACCGTACT
61 ACAT-GTCTTACACTAGCATCTCACAT-A-CGTACT
*
62166021 GATGCCATGTCCTAGACATGGTCTTACACTAGCTTACATCTCGAGGCCGATGCATGTCCAGACAT
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTTACATCTCGAGGCCGATGCATGTCCAGACAT
* *
62166086 GTCTTACACTAGCA-CTCGTC-T-CGATGCT
65 GTCTTACACTAGCATCTC-ACATACG-TACT
* * *
62166114 GGA-GCCATGTCCCAGACATGGTCTTACACTGACTCT-CATAT-TATGGTCGATGCATGTTCCAG
1 -GATGCCATGTCCCAGACATGGTCTTACACTG-CT-TACATCTCGA-GGCCGATGCATG-TCCAG
*
62166176 ACATTTCTTACACTAGC
61 ACATGTCTTACACTAGC
62166193 TCACATAAGT
Statistics
Matches: 150, Mismatches: 13, Indels: 23
0.81 0.07 0.12
Matches are distributed among these distances:
92 4 0.03
93 46 0.31
94 24 0.16
95 15 0.10
96 10 0.07
97 5 0.03
98 10 0.07
99 34 0.23
100 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCTTACATCTCGAGGCCGATGCATGTCCAGACATG
TCTTACACTAGCATCTCACATACGTACT
Found at i:62166550 original size:30 final size:30
Alignment explanation
Indices: 62166516--62166572 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
62166506 AATTTACATT
*
62166516 TTTGGTAAAATGACCATTTTGCCCCTAGAG
1 TTTGGCAAAATGACCATTTTGCCCCTAGAG
62166546 TTTGGCAAAATGACCATTTTGCCCCTA
1 TTTGGCAAAATGACCATTTTGCCCCTA
62166573 TGCTCGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (30 bp):
TTTGGCAAAATGACCATTTTGCCCCTAGAG
Found at i:62167608 original size:28 final size:24
Alignment explanation
Indices: 62167552--62167598 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
62167542 AAATCCACGA
62167552 TAAGTGATAAATATTGGACTGGGG
1 TAAGTGATAAATATTGGACTGGGG
62167576 TAAGTGATAAATATTGGACTGGG
1 TAAGTGATAAATATTGGACTGGG
62167599 CTATGTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.04, G:0.32, T:0.30
Consensus pattern (24 bp):
TAAGTGATAAATATTGGACTGGGG
Found at i:62167826 original size:27 final size:27
Alignment explanation
Indices: 62167808--62168060 Score: 305
Period size: 27 Copynumber: 9.4 Consensus size: 27
62167798 AATGTCCATT
* *
62167808 TAGGGTAAAATGACTGTAATTCCCTTG
1 TAGGGTAAAATGACTGTAATACCCCTG
62167835 TAGGGTAAAATGA-TCGTAATACCCCTG
1 TAGGGTAAAATGACT-GTAATACCCCTG
* ** *
62167862 TAGGGTAAAATGACCGTAATGTCCCTT
1 TAGGGTAAAATGACTGTAATACCCCTG
* *
62167889 TAGGGTAAAACGACTGTAATTCCCCTG
1 TAGGGTAAAATGACTGTAATACCCCTG
*
62167916 TAGGGTTAAATGA-TCGTAATACCCCTG
1 TAGGGTAAAATGACT-GTAATACCCCTG
*
62167943 TAGGGTAAAATGACTGTAATACCCCTA
1 TAGGGTAAAATGACTGTAATACCCCTG
*
62167970 TAGGGTAAAATGA-TCGTAATACCCCTA
1 TAGGGTAAAATGACT-GTAATACCCCTG
* * *
62167997 TAAGGTAAAATGACCGTAATGCCCCTG
1 TAGGGTAAAATGACTGTAATACCCCTG
* *
62168024 TAGGGTAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACTGTAATACCCCTG
*
62168051 TATGGTAAAA
1 TAGGGTAAAA
62168061 AGACAATTAT
Statistics
Matches: 196, Mismatches: 24, Indels: 12
0.84 0.10 0.05
Matches are distributed among these distances:
26 3 0.02
27 192 0.98
28 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
TAGGGTAAAATGACTGTAATACCCCTG
Found at i:62168044 original size:81 final size:81
Alignment explanation
Indices: 62167808--62168060 Score: 373
Period size: 81 Copynumber: 3.1 Consensus size: 81
62167798 AATGTCCATT
*
62167808 TAGGGTAAAATGACTGTAATTCCCTTGTAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT
1 TAGGGTAAAATGACTGTAATTCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT
** *
62167873 GACCGTAATGTCCCTT
66 GACCGTAATACCCCTA
* *
62167889 TAGGGTAAAACGACTGTAATTCCCCTGTAGGGTTAAATGATCGTAATACCCCTGTAGGGTAAAAT
1 TAGGGTAAAATGACTGTAATTCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT
*
62167954 GACTGTAATACCCCTA
66 GACCGTAATACCCCTA
* * * * *
62167970 TAGGGTAAAATGA-TCGTAATACCCCTATAAGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAA
1 TAGGGTAAAATGACT-GTAATTCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAA
62168034 TGACCGTAATACCCCTA
65 TGACCGTAATACCCCTA
*
62168051 TATGGTAAAA
1 TAGGGTAAAA
62168061 AGACAATTAT
Statistics
Matches: 155, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 1 0.01
81 154 0.99
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (81 bp):
TAGGGTAAAATGACTGTAATTCCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAGGGTAAAAT
GACCGTAATACCCCTA
Found at i:62170829 original size:60 final size:60
Alignment explanation
Indices: 62170727--62170867 Score: 162
Period size: 60 Copynumber: 2.3 Consensus size: 60
62170717 CCAATTGTGT
* * *
62170727 TGATATGGGCAAGGCCCAATATATCTCAACTTGTTATAGGGCTACGGCCCAGATTGATAC
1 TGATATGGGCTAGGCCCAGTATATCTCAACTTGTTATAGGGCTACGGCCCAGATTAATAC
* * * *
62170787 TGATATGGGCTAGGCCCAGTATACTCTGATA-TTG-TA-AGGGGCTATGGCCCAGGTTAATAT
1 TGATATGGGCTAGGCCCAGTATA-TCTCA-ACTTGTTATA-GGGCTACGGCCCAGATTAATAC
62170847 TGATATGGGCTAAGGCCCAGT
1 TGATATGGGCT-AGGCCCAGT
62170868 TAACTCTAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
59 1 0.01
60 52 0.74
61 16 0.23
62 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (60 bp):
TGATATGGGCTAGGCCCAGTATATCTCAACTTGTTATAGGGCTACGGCCCAGATTAATAC
Found at i:62175835 original size:92 final size:92
Alignment explanation
Indices: 62175678--62175861 Score: 350
Period size: 92 Copynumber: 2.0 Consensus size: 92
62175668 TGAGTAACTA
62175678 TTCCAAAACACTCACCAAAATATTCACTTTTGAAAAAAAATCGAAAGCTTAGACAAGTTTCCCTT
1 TTCCAAAACACTCACCAAAATATTCACTTTTGAAAAAAAATCGAAAGCTTAGACAAGTTTCCCTT
62175743 TGCCCTTATCTCTACTCGTTGAAGGTC
66 TGCCCTTATCTCTACTCGTTGAAGGTC
* *
62175770 TTCCAAAACACTCACCAAAATATTCGCTTTTGACAAAAAATCGAAAGCTTAGACAAGTTTCCCTT
1 TTCCAAAACACTCACCAAAATATTCACTTTTGAAAAAAAATCGAAAGCTTAGACAAGTTTCCCTT
62175835 TGCCCTTATCTCTACTCGTTGAAGGTC
66 TGCCCTTATCTCTACTCGTTGAAGGTC
62175862 CTATTGATTC
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 90 1.00
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (92 bp):
TTCCAAAACACTCACCAAAATATTCACTTTTGAAAAAAAATCGAAAGCTTAGACAAGTTTCCCTT
TGCCCTTATCTCTACTCGTTGAAGGTC
Found at i:62179483 original size:42 final size:41
Alignment explanation
Indices: 62179377--62179502 Score: 119
Period size: 43 Copynumber: 3.0 Consensus size: 41
62179367 AGAAAGCTTG
* * * *
62179377 TACAATGCCAATGTCCCAGAC-GTGGCCTTACATGTAATCGAA
1 TACAATGCC-ATGTCCCAGACAG-GGTCTTACACGAAATCAAA
* * *
62179419 TATCGATGCCACTGTACTAGACAGGGTCTTACACGAAATCAAA
1 TA-CAATGCCA-TGTCCCAGACAGGGTCTTACACGAAATCAAA
*
62179462 TACAATGCCGATGTCCCAGACATGGTCTTACACGTAAATCA
1 TACAATGCC-ATGTCCCAGACAGGGTCTTACACG-AAATCA
62179503 TAAATCGATG
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
42 29 0.43
43 38 0.56
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
TACAATGCCATGTCCCAGACAGGGTCTTACACGAAATCAAA
Found at i:62179535 original size:44 final size:42
Alignment explanation
Indices: 62179377--62179542 Score: 109
Period size: 43 Copynumber: 3.9 Consensus size: 42
62179367 AGAAAGCTTG
* * ** * * *
62179377 TACAATGCCAATGTCCCAGACGTGGCCTTACATGTAATCGAA
1 TACAATGCCAATGTCCCAAACATGATCTTACACGAAATCAAA
* * * * * * *
62179419 TATCGATGCCACTGTACTAGACAGGGTCTTACACGAAATCAAA
1 TA-CAATGCCAATGTCCCAAACATGATCTTACACGAAATCAAA
* * *
62179462 TACAATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA
1 TACAATGCCAATGTCCCAAACATGATCTTACACG-AAATCA-AA
* * *
62179506 -ATCGATGCCAATGTCCCAAACGTGATCTTACATGAAA
1 TA-CAATGCCAATGTCCCAAACATGATCTTACACGAAA
62179543 AGCACATATC
Statistics
Matches: 98, Mismatches: 22, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 28 0.29
43 42 0.43
44 28 0.29
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAAACATGATCTTACACGAAATCAAA
Found at i:62181570 original size:40 final size:40
Alignment explanation
Indices: 62181518--62181664 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 40
62181508 ATAACCACAA
* ***
62181518 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
* *
62181558 GCACAAATGCCTTCGGGTCTTAGCCCGAAAATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
* * *
62181598 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAA-ATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCC-GA-AAATAGCAACTC
* * *
62181638 GCATAAATGCCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAACCCG
62181665 GATATCATTC
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 87 0.91
41 5 0.05
42 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
Found at i:62183774 original size:14 final size:14
Alignment explanation
Indices: 62183755--62183785 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
62183745 CATTTAAAAT
62183755 CCACTATCACATAC
1 CCACTATCACATAC
62183769 CCACTATCACATAC
1 CCACTATCACATAC
62183783 CCA
1 CCA
62183786 TATATGTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.19
Consensus pattern (14 bp):
CCACTATCACATAC
Found at i:62187910 original size:22 final size:22
Alignment explanation
Indices: 62187885--62187953 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
62187875 CACTAAGTCA
*
62187885 ACAGAACGGCTAAAC-CCTGTAG
1 ACAGGACGGCTAAACACC-GTAG
* *
62187907 ACAGGACGACTCAACACCGTAG
1 ACAGGACGGCTAAACACCGTAG
* *
62187929 ACAGGACGGGTCAACACCGTAG
1 ACAGGACGGCTAAACACCGTAG
62187951 ACA
1 ACA
62187954 TCACAGCAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
22 39 0.95
23 2 0.05
ACGTcount: A:0.36, C:0.29, G:0.25, T:0.10
Consensus pattern (22 bp):
ACAGGACGGCTAAACACCGTAG
Found at i:62188213 original size:27 final size:27
Alignment explanation
Indices: 62188183--62188242 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
62188173 GAGCATAATC
*
62188183 GTCATTCTAC-CATACAGGGGTATTACG
1 GTCATTCTACAC-TACAAGGGTATTACG
* *
62188210 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTACG
62188237 GTCATT
1 GTCATT
62188243 TTCCAAACCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTACG
Found at i:62188256 original size:27 final size:27
Alignment explanation
Indices: 62188183--62188261 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
62188173 GAGCATAATC
* * *
62188183 GTCATTCTAC-CATACAGGGGTATTACG
1 GTCATTTTACACA-ACAAGGGTATTTCG
*
62188210 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACAACAAGGGTATTTCG
* *
62188237 GTCATTTTCCA-AACCGAGGGTATTT
1 GTCATTTTACACAA-CAAGGGTATTT
62188262 ATGACCCATC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACACAACAAGGGTATTTCG
Found at i:62191949 original size:13 final size:12
Alignment explanation
Indices: 62191931--62191974 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
62191921 TTTGACATTT
62191931 TCCATTTCAAGTA
1 TCCATTTCAA-TA
62191944 TCCA-TTCTAATA
1 TCCATTTC-AATA
62191956 TCCATTTCATATA
1 TCCATTTCA-ATA
62191969 TCCATT
1 TCCATT
62191975 CCACATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.30, C:0.25, G:0.02, T:0.43
Consensus pattern (12 bp):
TCCATTTCAATA
Found at i:62192055 original size:25 final size:24
Alignment explanation
Indices: 62192025--62192094 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
62192015 ACGTAGGAAC
62192025 AATGCTCACACAAGCTGTGATGGTA
1 AATGCTCACACAAGCTGTGATGG-A
* * *
62192050 AATGCTCATACGAGCTGTGGGATGGG
1 AATGCTCACACAAGCTGT--GATGGA
* *
62192076 CATGCTCACACAAGTTGTG
1 AATGCTCACACAAGCTGTG
62192095 GGTCGAGATG
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.03
25 16 0.44
26 14 0.39
27 5 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (24 bp):
AATGCTCACACAAGCTGTGATGGA
Found at i:62192094 original size:26 final size:27
Alignment explanation
Indices: 62192025--62192096 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 27
62192015 ACGTAGGAAC
62192025 AATGCTCACACAAGCTGT--GATGGTA
1 AATGCTCACACAAGCTGTGGGATGGTA
* * *
62192050 AATGCTCATACGAGCTGTGGGATGG-G
1 AATGCTCACACAAGCTGTGGGATGGTA
* *
62192076 CATGCTCACACAAGTTGTGGG
1 AATGCTCACACAAGCTGTGGG
62192097 TCGAGATGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 16 0.42
26 17 0.45
27 5 0.13
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (27 bp):
AATGCTCACACAAGCTGTGGGATGGTA
Found at i:62197339 original size:28 final size:29
Alignment explanation
Indices: 62197308--62197367 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
62197298 ACGGGTTTAA
62197308 ATTGCATA-GCACTAAGTGT-GCAAGTTTG
1 ATTG-ATAGGCACTAAGTGTGGCAAGTTTG
* *
62197336 ATTGTTAGGCACTAAGTGTGGCGAGTTTG
1 ATTGATAGGCACTAAGTGTGGCAAGTTTG
62197365 ATT
1 ATT
62197368 ATGTAAAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 2 0.07
28 15 0.54
29 11 0.39
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (29 bp):
ATTGATAGGCACTAAGTGTGGCAAGTTTG
Found at i:62198376 original size:13 final size:13
Alignment explanation
Indices: 62198358--62198382 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62198348 CTAACATACT
62198358 AATGGTCTGATTA
1 AATGGTCTGATTA
62198371 AATGGTCTGATT
1 AATGGTCTGATT
62198383 TAACACAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (13 bp):
AATGGTCTGATTA
Found at i:62200591 original size:28 final size:28
Alignment explanation
Indices: 62200497--62200621 Score: 121
Period size: 28 Copynumber: 4.4 Consensus size: 28
62200487 GTAGTCCGCA
* * *
62200497 ACAC-TAGTGTTATATAAGCAAACTCGC
1 ACACTTAGTGCTATACAATCAAACTCGC
*
62200524 ACACTAAGTGCT-TACATAATCAAACTCGC
1 ACACTTAGTGCTATAC--AATCAAACTCGC
*
62200553 ACACTTAGTGCTATACAATCAAACTTGC
1 ACACTTAGTGCTATACAATCAAACTCGC
* *
62200581 ACACTTAGTGCTATGCAATTTAAAC-CGC
1 ACACTTAGTGCTATACAA-TCAAACTCGC
62200609 GTACACTTAGTGC
1 --ACACTTAGTGC
62200622 CAATCTCAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
27 6 0.07
28 35 0.43
29 27 0.33
30 14 0.17
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (28 bp):
ACACTTAGTGCTATACAATCAAACTCGC
Found at i:62208534 original size:28 final size:28
Alignment explanation
Indices: 62208502--62208629 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
62208492 ATAGTAAGTC
*
62208502 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
62208530 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
62208559 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
62208587 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
62208616 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62208630 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:62208592 original size:57 final size:57
Alignment explanation
Indices: 62208501--62208629 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
62208491 TATAGTAAGT
*
62208501 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
62208558 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
62208615 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
62208630 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:62213264 original size:44 final size:43
Alignment explanation
Indices: 62213214--62213371 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
62213204 ATGTGTTTTT
*
62213214 GTGTAAGACCATGTCTGGGACGTTGGCATCA-ATTTATGATTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCATA-TT-TGATTTAC
* *
62213258 GTGTAAGACCATGTCTGGGACATCGACATCATATTTGATTT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTAC
* * * *
62213300 GTGTAAGACCCTATCTGGGATAGTGGCATCGATATTTGA-TTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTTAC
* * *
62213343 ATGTAAGACCACGTCTGGGATATTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
62213372 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 27 0.28
43 39 0.40
44 30 0.31
45 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCATATTTGATTTAC
Found at i:62215945 original size:40 final size:40
Alignment explanation
Indices: 62215885--62215989 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
62215875 CGACAAATCA
* * * *
62215885 GCTATATGTGGCAGTTAGTGTGTGATTC-GAGATAGCTTTG
1 GCTAAATGTGACACTTAGTGTGCGATTCAGA-ATAGCTTTG
*
62215925 GCTAAATGTGACACTTAGTGTGCGATTCAGAATAGCTTCG
1 GCTAAATGTGACACTTAGTGTGCGATTCAGAATAGCTTTG
* * * * *
62215965 ACTATATATGGCACTTTGTGTGCGA
1 GCTAAATGTGACACTTAGTGTGCGA
62215990 GACCGAGATA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (40 bp):
GCTAAATGTGACACTTAGTGTGCGATTCAGAATAGCTTTG
Found at i:62216010 original size:41 final size:41
Alignment explanation
Indices: 62215912--62216027 Score: 117
Period size: 40 Copynumber: 2.8 Consensus size: 41
62215902 GTGTGTGATT
* * * **
62215912 CGAGATAGCTTTGGCTAAATGTGACACTTAGTGTGCGATTC
1 CGAGATAGCTTTGACTATATATGACACTTAGTGTGCGAGAC
* * * *
62215953 AGA-ATAGCTTCGACTATATATGGCACTTTGTGTGCGAGAC
1 CGAGATAGCTTTGACTATATATGACACTTAGTGTGCGAGAC
* *
62215993 CGAGATAGCTTTGACTATGTATTAGCACTTAGTGT
1 CGAGATAGCTTTGACTATATATGA-CACTTAGTGT
62216028 TCTAGATATC
Statistics
Matches: 58, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
40 31 0.53
41 18 0.31
42 9 0.16
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (41 bp):
CGAGATAGCTTTGACTATATATGACACTTAGTGTGCGAGAC
Found at i:62217867 original size:40 final size:40
Alignment explanation
Indices: 62217815--62217961 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 40
62217805 ATAACCACAA
* ***
62217815 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
* *
62217855 GCACAAATGCCTTCGGGTCTTAGCCCGAAAATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
* * *
62217895 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAA-ATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCC-GA-AAATAGCAACTC
* * *
62217935 GCATAAATGCCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAACCCG
62217962 GATATCATTC
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 87 0.91
41 5 0.05
42 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGAAAATAGCAACTC
Found at i:62220067 original size:14 final size:14
Alignment explanation
Indices: 62220048--62220078 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
62220038 CATTTAAAAT
62220048 CCACTATCACATAC
1 CCACTATCACATAC
62220062 CCACTATCACATAC
1 CCACTATCACATAC
62220076 CCA
1 CCA
62220079 TATATGTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.19
Consensus pattern (14 bp):
CCACTATCACATAC
Found at i:62224203 original size:22 final size:22
Alignment explanation
Indices: 62224178--62224246 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
62224168 CACTAAGTCA
*
62224178 ACAGAACGGCTAAAC-CCTGTAG
1 ACAGGACGGCTAAACACC-GTAG
* *
62224200 ACAGGACGACTCAACACCGTAG
1 ACAGGACGGCTAAACACCGTAG
* *
62224222 ACAGGACGGGTCAACACCGTAG
1 ACAGGACGGCTAAACACCGTAG
62224244 ACA
1 ACA
62224247 TCACAGCAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
22 39 0.95
23 2 0.05
ACGTcount: A:0.36, C:0.29, G:0.25, T:0.10
Consensus pattern (22 bp):
ACAGGACGGCTAAACACCGTAG
Found at i:62224506 original size:27 final size:27
Alignment explanation
Indices: 62224476--62224535 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
62224466 GAGCATAATC
*
62224476 GTCATTCTAC-CATACAGGGGTATTACG
1 GTCATTCTACAC-TACAAGGGTATTACG
* *
62224503 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTACG
62224530 GTCATT
1 GTCATT
62224536 TTCCAAACCG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 28 0.97
28 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTACG
Found at i:62224549 original size:27 final size:27
Alignment explanation
Indices: 62224476--62224554 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 27
62224466 GAGCATAATC
* * *
62224476 GTCATTCTAC-CATACAGGGGTATTACG
1 GTCATTTTACACA-ACAAGGGTATTTCG
*
62224503 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACAACAAGGGTATTTCG
* *
62224530 GTCATTTTCCA-AACCGAGGGTATTT
1 GTCATTTTACACAA-CAAGGGTATTT
62224555 ATGACCCATC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACACAACAAGGGTATTTCG
Found at i:62228240 original size:13 final size:12
Alignment explanation
Indices: 62228222--62228265 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 12
62228212 TTTGACATTT
62228222 TCCATTTCAAGTA
1 TCCATTTCAA-TA
62228235 TCCA-TTCTAATA
1 TCCATTTC-AATA
62228247 TCCATTTCATATA
1 TCCATTTCA-ATA
62228260 TCCATT
1 TCCATT
62228266 CCACATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 10 0.36
13 18 0.64
ACGTcount: A:0.30, C:0.25, G:0.02, T:0.43
Consensus pattern (12 bp):
TCCATTTCAATA
Found at i:62228346 original size:25 final size:24
Alignment explanation
Indices: 62228316--62228385 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
62228306 ACGTAGGAAC
62228316 AATGCTCACACAAGCTGTGATGGTA
1 AATGCTCACACAAGCTGTGATGG-A
* * *
62228341 AATGCTCATACGAGCTGTGGGATGGG
1 AATGCTCACACAAGCTGT--GATGGA
* *
62228367 CATGCTCACACAAGTTGTG
1 AATGCTCACACAAGCTGTG
62228386 GGTCGAGATG
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.03
25 16 0.44
26 14 0.39
27 5 0.14
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (24 bp):
AATGCTCACACAAGCTGTGATGGA
Found at i:62228385 original size:26 final size:27
Alignment explanation
Indices: 62228316--62228387 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 27
62228306 ACGTAGGAAC
62228316 AATGCTCACACAAGCTGT--GATGGTA
1 AATGCTCACACAAGCTGTGGGATGGTA
* * *
62228341 AATGCTCATACGAGCTGTGGGATGG-G
1 AATGCTCACACAAGCTGTGGGATGGTA
* *
62228367 CATGCTCACACAAGTTGTGGG
1 AATGCTCACACAAGCTGTGGG
62228388 TCGAGATGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
25 16 0.42
26 17 0.45
27 5 0.13
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (27 bp):
AATGCTCACACAAGCTGTGGGATGGTA
Found at i:62235765 original size:27 final size:27
Alignment explanation
Indices: 62235735--62235814 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
62235725 ATCTCATATA
* *
62235735 TGTAGGCTAGTATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
62235762 TGTAGGGT-GAAATTACTGAAATGCCCC
1 TGTAGGGTAG-AATTACTGAAATACCCC
*
62235789 TGTAGGGTAAAATTACTGAAATACCC
1 TGTAGGGTAGAATTACTGAAATACCC
62235815 TTGGTTTACA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCC
Found at i:62235963 original size:81 final size:79
Alignment explanation
Indices: 62235795--62236141 Score: 315
Period size: 81 Copynumber: 4.3 Consensus size: 79
62235785 CCCCTGTAGG
* * ** ***
62235795 GTAAAATTACTGAAATACCCTTGGTTTACAAAATTACTG-AATACCCTTGGTTAGTAAAATTACC
1 GTAAAATTACCGAAATACCCTTGATTTGTAAAATTAC-GAAATACCCTAACTT-GTAAAATTACC
*
62235859 AAAATACC-CCTAATTT
64 AAAATACCTTC-AATTT
* ** *
62235875 GTGAAATTACCGAAATACCCTTGACCTGTAAAATTATCGAAATACCCTCAACTTGTAAAATTATC
1 GTAAAATTACCGAAATACCCTTGATTTGTAAAATTA-CGAAATACCCT-AACTTGTAAAATTACC
*
62235940 AAAATACCTTCAACTT
64 AAAATACCTTCAATTT
** * * *
62235956 GTAAAATTACCGAAATACCCTCAATTTGTAAAATTACGAAAATACCACTGATTTGGAAAATTACC
1 GTAAAATTACCGAAATACCCTTGATTTGTAAAATTACG-AAATACC-CTAACTTGTAAAATTACC
*
62236021 AAAATACCTTTAATTT
64 AAAATACCTTCAATTT
* * * * *
62236037 GGAAAATTACAGAAATACCCCTGATTTATAAAATTACAAAAATACCCTTAAC-TGTCAAAAATTA
1 GTAAAATTACCGAAATACCCTTGATTTGTAAAATTAC-GAAATACCC-TAACTTGT--AAAATTA
* **
62236101 CAAAAATACCATT-GGTTT
62 CCAAAATACC-TTCAATTT
62236119 GTAAAATTACCGAAATACCCTTG
1 GTAAAATTACCGAAATACCCTTG
62236142 GTTTTATAGA
Statistics
Matches: 216, Mismatches: 40, Indels: 20
0.78 0.14 0.07
Matches are distributed among these distances:
80 35 0.16
81 135 0.62
82 44 0.20
83 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (79 bp):
GTAAAATTACCGAAATACCCTTGATTTGTAAAATTACGAAATACCCTAACTTGTAAAATTACCAA
AATACCTTCAATTT
Found at i:62236145 original size:27 final size:27
Alignment explanation
Indices: 62235795--62236141 Score: 263
Period size: 27 Copynumber: 12.9 Consensus size: 27
62235785 CCCCTGTAGG
* *
62235795 GTAAAATTACTGAAATACCCTTGGTTT
1 GTAAAATTACCGAAATACCCTTGATTT
** * * *
62235822 ACAAAATTACTG-AATACCCTTGGTTA
1 GTAAAATTACCGAAATACCCTTGATTT
* * *
62235848 GTAAAATTACCAAAATACCCCTAATTT
1 GTAAAATTACCGAAATACCCTTGATTT
* **
62235875 GTGAAATTACCGAAATACCCTTGACCT
1 GTAAAATTACCGAAATACCCTTGATTT
* ** *
62235902 GTAAAATTATCGAAATACCCTCAACTT
1 GTAAAATTACCGAAATACCCTTGATTT
* * * *
62235929 GTAAAATTATCAAAATA-CCTTCAACTT
1 GTAAAATTACCGAAATACCCTT-GATTT
**
62235956 GTAAAATTACCGAAATACCCTCAATTT
1 GTAAAATTACCGAAATACCCTTGATTT
62235983 GTAAAATTA-CGAAAATACCAC-TGATTT
1 GTAAAATTACCG-AAATACC-CTTGATTT
* * * *
62236010 GGAAAATTACCAAAATACCTTTAATTT
1 GTAAAATTACCGAAATACCCTTGATTT
* * *
62236037 GGAAAATTACAGAAATACCCCTGATTT
1 GTAAAATTACCGAAATACCCTTGATTT
* ** **
62236064 ATAAAATTACAAAAATACCCTT-AACT
1 GTAAAATTACCGAAATACCCTTGATTT
** * *
62236090 GTCAAAAATTACAAAAATACCATTGGTTT
1 GT--AAAATTACCGAAATACCCTTGATTT
62236119 GTAAAATTACCGAAATACCCTTG
1 GTAAAATTACCGAAATACCCTTG
62236142 GTTTTATAGA
Statistics
Matches: 257, Mismatches: 53, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
26 29 0.11
27 201 0.78
28 24 0.09
29 3 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTTGATTT
Found at i:62236476 original size:41 final size:41
Alignment explanation
Indices: 62236409--62236527 Score: 179
Period size: 41 Copynumber: 2.9 Consensus size: 41
62236399 AGTAAAAAAA
*
62236409 TGAGGATCACA-GGTTTCTTGACGATCGTGGATCCACCGAT
1 TGAGGATCACATGGTTGCTTGACGATCGTGGATCCACCGAT
*
62236449 TGAGGATCACATGGTTGCTTGACGATCGTGGATCCACTGAT
1 TGAGGATCACATGGTTGCTTGACGATCGTGGATCCACCGAT
* *
62236490 T-AGGGATCGCATGGTTGCTTGACGACCGTGGATCCACC
1 TGA-GGATCACATGGTTGCTTGACGATCGTGGATCCACC
62236528 AATGGCTTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
40 12 0.17
41 60 0.83
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (41 bp):
TGAGGATCACATGGTTGCTTGACGATCGTGGATCCACCGAT
Found at i:62236670 original size:25 final size:25
Alignment explanation
Indices: 62236617--62236803 Score: 194
Period size: 25 Copynumber: 7.5 Consensus size: 25
62236607 TACCGTCATT
* * *
62236617 GATGGCTATGTACCAATCTGTTATC
1 GATGGCTATGTGCCGATATGTTATC
* * *
62236642 GATGGCTTTGTGCCGATATGATATT
1 GATGGCTATGTGCCGATATGTTATC
*
62236667 GATGGCTATGTGCCGATTTGTTATC
1 GATGGCTATGTGCCGATATGTTATC
* * *
62236692 GATGGCTTTGTGCCGATATGATATT
1 GATGGCTATGTGCCGATATGTTATC
* *
62236717 GATGGCTATGTGCTGATCTGTTATC
1 GATGGCTATGTGCCGATATGTTATC
* * * * *
62236742 GATGACTTTGTGTCGATATGATATT
1 GATGGCTATGTGCCGATATGTTATC
* *
62236767 GGTGGCTATGTGCCGATCTGTTATC
1 GATGGCTATGTGCCGATATGTTATC
*
62236792 GATGGCTTTGTG
1 GATGGCTATGTG
62236804 TCAATCGCAT
Statistics
Matches: 127, Mismatches: 35, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 127 1.00
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (25 bp):
GATGGCTATGTGCCGATATGTTATC
Found at i:62236805 original size:50 final size:50
Alignment explanation
Indices: 62236614--62236803 Score: 317
Period size: 50 Copynumber: 3.8 Consensus size: 50
62236604 TATTACCGTC
* *
62236614 ATTGATGGCTATGTACCAATCTGTTATCGATGGCTTTGTGCCGATATGAT
1 ATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGAT
*
62236664 ATTGATGGCTATGTGCCGATTTGTTATCGATGGCTTTGTGCCGATATGAT
1 ATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGAT
* * *
62236714 ATTGATGGCTATGTGCTGATCTGTTATCGATGACTTTGTGTCGATATGAT
1 ATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGAT
*
62236764 ATTGGTGGCTATGTGCCGATCTGTTATCGATGGCTTTGTG
1 ATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTG
62236804 TCAATCGCAT
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 130 1.00
ACGTcount: A:0.18, C:0.14, G:0.27, T:0.40
Consensus pattern (50 bp):
ATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCCGATATGAT
Found at i:62240643 original size:19 final size:20
Alignment explanation
Indices: 62240608--62240645 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62240598 TTCGGCCTAA
62240608 GCATGGTTTGTGCAAATTTT
1 GCATGGTTTGTGCAAATTTT
*
62240628 GCATGTTTTGTG-AAATTT
1 GCATGGTTTGTGCAAATTT
62240646 GGACTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.08, G:0.24, T:0.47
Consensus pattern (20 bp):
GCATGGTTTGTGCAAATTTT
Found at i:62241126 original size:43 final size:43
Alignment explanation
Indices: 62241064--62241190 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 43
62241054 AGGATTTCCA
*
62241064 ATATGTGTTCTCATGTAAGACCACGTATGGGACGTTGGCATCG
1 ATATGTGTTCTCATGTAAGACCACGTCTGGGACGTTGGCATCG
* ** *
62241107 ATATGTGTTCTCATATAAGACCTTGTCTGGGACAG-TAGCATCG
1 ATATGTGTTCTCATGTAAGACCACGTCTGGGAC-GTTGGCATCG
* *
62241150 ATATGTGCTT-ACATGTAAGACCACGCCTGGGACGTTGGCAT
1 ATATGTG-TTCTCATGTAAGACCACGTCTGGGACGTTGGCAT
62241191 TGTACGATAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 1 0.01
43 66 0.94
44 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
ATATGTGTTCTCATGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:62258069 original size:46 final size:46
Alignment explanation
Indices: 62258002--62258171 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
62257992 TGTAACCCGC
* *
62258002 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
*
62258048 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* ** * * * *
62258094 ACATATCTCGAAGTTGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
62258141 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
62258172 TTCGGATGCC
Statistics
Matches: 101, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.59
47 29 0.29
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:62263672 original size:46 final size:46
Alignment explanation
Indices: 62263505--62263680 Score: 151
Period size: 46 Copynumber: 3.8 Consensus size: 46
62263495 TGTAACCCGC
* ** * * *
62263505 CCATAAGTGAACTCGGACTCAACTCATTAAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCAT
*
62263551 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGACATTCGC-A--T
* ** * * * *
62263597 ACATATCTCGAAGTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCAT
* *
62263644 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGA
62263681 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
44 3 0.03
46 66 0.63
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACAAGCTCGGACATTCGCAT
Found at i:62267507 original size:40 final size:40
Alignment explanation
Indices: 62267447--62267609 Score: 161
Period size: 40 Copynumber: 4.1 Consensus size: 40
62267437 GTAGTAAGGT
* *
62267447 GAAGTGCATTTGTGCGAGTTACTA-ATTTCGGGCTAAGTCCC
1 GAAG-GCATTTGTGCAAGTTACTATA-TCCGGGCTAAGTCCC
62267488 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
1 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
* ** * *
62267528 GAAGGCATTTGTGCTAGCGACCATATCCGGGCTAAGACCC
1 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
* * * *** *
62267568 GACGGC-CTTGTGCGAGTGGTTATATCC-GGCTAAATCCC
1 GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
62267606 GAAG
1 GAAG
62267610 ATAATTAGGT
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 12 0.12
39 15 0.14
40 72 0.69
41 5 0.05
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCC
Found at i:62275292 original size:72 final size:72
Alignment explanation
Indices: 62275202--62275351 Score: 282
Period size: 72 Copynumber: 2.1 Consensus size: 72
62275192 ACGATTTGAT
*
62275202 TAAGTCATGACTCATAATCGTAACAAATATACGGTGATATAATGATTCTACTTGAATTATATGTT
1 TAAGTCATGACTCATAATCATAACAAATATACGGTGATATAATGATTCTACTTGAATTATATGTT
62275267 GAGTTAA
66 GAGTTAA
62275274 TAAGTCATGACTCATAATCATAACAAATATACGGTGATATAATGATTCTACTTGAATTATATGTT
1 TAAGTCATGACTCATAATCATAACAAATATACGGTGATATAATGATTCTACTTGAATTATATGTT
62275339 GAGTTAA
66 GAGTTAA
*
62275346 TTAGTC
1 TAAGTC
62275352 TATACGTATG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 76 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (72 bp):
TAAGTCATGACTCATAATCATAACAAATATACGGTGATATAATGATTCTACTTGAATTATATGTT
GAGTTAA
Found at i:62275754 original size:40 final size:40
Alignment explanation
Indices: 62275551--62275732 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
62275541 CTAACGGGGT
* * * * *
62275551 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
62275591 TAAGTCCTGAAGGTATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
62275631 TAAGTCCCGAAGGAATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
62275671 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
62275711 TAAGTCCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGC
62275733 TAGCGACCAT
Statistics
Matches: 130, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 2 0.02
40 128 0.98
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:62275760 original size:40 final size:40
Alignment explanation
Indices: 62275551--62275800 Score: 249
Period size: 40 Copynumber: 6.3 Consensus size: 40
62275541 CTAACGGGGT
* * * * *
62275551 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTTCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
* *
62275591 TAAGTCCTGAAGGTATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
*
62275631 TAAGTCCCGAAGGAATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGC
*
62275671 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* ** * *
62275711 TAAGTCCCGAAGGCATTTGTGCTAGCGACCATATCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * * ***
62275751 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
*
62275789 TAAATCCCGAAG
1 TAAGTCCCGAAG
62275801 ATAATTGGGT
Statistics
Matches: 180, Mismatches: 29, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
38 11 0.06
39 15 0.08
40 153 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
Found at i:62278073 original size:23 final size:23
Alignment explanation
Indices: 62278046--62278103 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
62278036 ACGTTTACCG
62278046 CTATTAGCAGCTTTGCAGCGCTA
1 CTATTAGCAGCTTTGCAGCGCTA
* * *
62278069 CTATTAGCAGCTTTGCTGTGTTA
1 CTATTAGCAGCTTTGCAGCGCTA
62278092 CTATTAGCAGCT
1 CTATTAGCAGCT
62278104 ACACTGCGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCAGCGCTA
Found at i:62283389 original size:16 final size:16
Alignment explanation
Indices: 62283358--62283394 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
62283348 ATATGAATAA
62283358 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
62283374 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
62283390 TATTA
1 TATTA
62283395 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:62283446 original size:22 final size:22
Alignment explanation
Indices: 62283406--62283461 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
62283396 AATAAAATTG
*
62283406 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
62283426 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
62283448 TATTAATAATTTAT
1 AAATAATAAATTAT
62283462 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:62283569 original size:24 final size:23
Alignment explanation
Indices: 62283506--62283569 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
62283496 TTTAATAATA
* *
62283506 TTTA-AAATATAATATTTAAAAT
1 TTTATAAATATAATAATAAAAAT
* * *
62283528 TTTTTAAAAATAAAAATAAAAAT
1 TTTATAAATATAATAATAAAAAT
*
62283551 TATTATCAATATAATAATA
1 T-TTATAAATATAATAATA
62283570 TTAAGTTTGA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
22 3 0.10
23 15 0.48
24 13 0.42
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTATAAATATAATAATAAAAAT
Found at i:62301933 original size:29 final size:29
Alignment explanation
Indices: 62301846--62301963 Score: 141
Period size: 29 Copynumber: 4.1 Consensus size: 29
62301836 GTGAGCATGA
62301846 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
62301874 ACATAAATGTGATTTGGGCCTAAAGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
62301903 ATATGAATGTGATTTTGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * * * *
62301932 ATGTGAATAT-AATTGGGTCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
62301960 ATAT
1 ATAT
62301964 ACAGGTATGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 20 0.26
29 56 0.74
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:62306316 original size:48 final size:48
Alignment explanation
Indices: 62306161--62306484 Score: 307
Period size: 48 Copynumber: 6.8 Consensus size: 48
62306151 AGGGTAAATT
* * * ** *
62306161 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
* * *
62306209 GCTGATGCCATGTCCTAGAA-ATGTTCTTACACTAGCTCTTGTC-TCAA--T-
1 GCCGATGCCATGTCCCA-AACATGGTCTTACACTAGCTC---TCAT-AATGTG
* * *
62306257 GCCAATACCATGTCCCAAACATGGTCTTATACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
** * * * ***
62306305 GCCGATGCCATGTCCCCGACATGGTCTTACACTAGCACACATATTAAC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
* * * * *
62306353 GCTGACGCCATGTCCCATACATGGTCTTACACTGGCTCTCATAATATG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
*
62306401 GCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
* * *
62306449 GTCGATGCCATGTCCCAGACATGGTCTTACAGTAGC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
62306485 ACACATATCA
Statistics
Matches: 222, Mismatches: 44, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
45 4 0.02
46 1 0.00
47 3 0.01
48 211 0.95
49 1 0.00
50 1 0.00
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
Found at i:62306421 original size:144 final size:142
Alignment explanation
Indices: 62306161--62306492 Score: 441
Period size: 144 Copynumber: 2.3 Consensus size: 142
62306151 AGGGTAAATT
* * * * * * *
62306161 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTTGAGGCTGATGCCATGTCCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATTAACGCTGACGCCATGTCCCA
* * *
62306226 GAAATGTTCTTACACTAGCTCTTGTCTCAATGCCAATACCATGTCCCAAACATGGTCTTATACTA
66 GAAATGGTCTTACACTAGCTC-T-TCTAAATGCCAATACCATGTCCCAAACATGGTCTTACACTA
62306291 GCTCTCATAATGTG
129 GCTCTCATAATGTG
*
62306305 GCCGATGCCATGTCCCCGACATGGTCTTACACTAGCACACATATTAACGCTGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATTAACGCTGACGCCATGTCCCA
* * * ** *
62306370 TACATGGTCTTACACTGGCTC-TCATAATATGGCTGATGCCATGTCCCAAACATGGTCTTACACT
66 GAAATGGTCTTACACTAGCTCTTC-TAA-AT-GCCAATACCATGTCCCAAACATGGTCTTACACT
62306434 AGCTCTCATAATGTG
128 AGCTCTCATAATGTG
* *
62306449 GTCGATGCCATGTCCCAGACATGGTCTTACAGTAGCACACATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT
62306493 CACCCAATTG
Statistics
Matches: 165, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
141 2 0.01
142 2 0.01
143 2 0.01
144 159 0.96
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATTAACGCTGACGCCATGTCCCA
GAAATGGTCTTACACTAGCTCTTCTAAATGCCAATACCATGTCCCAAACATGGTCTTACACTAGC
TCTCATAATGTG
Found at i:62309554 original size:19 final size:19
Alignment explanation
Indices: 62309530--62309569 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
62309520 GCATTTGGCC
62309530 AAGGTA-ATATTTATGTATG
1 AAGGTATATA-TTATGTATG
*
62309549 AAGGTATATATTATTTATG
1 AAGGTATATATTATGTATG
62309568 AA
1 AA
62309570 ATTGTAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
AAGGTATATATTATGTATG
Found at i:62313457 original size:40 final size:40
Alignment explanation
Indices: 62313401--62313545 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
62313391 CAAGCCTACA
* * * *
62313401 GGTCTTTAA-CCCGGATACCATTCCAGCACGA-AGCTTGCG
1 GGTCTTTAAGCCCGGATACAATTCCAGCA-TATAGCCTGTG
* *
62313440 GGTCTTTATGCCCGGATACAATTCCAGCATATAACCTGTG
1 GGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGTG
*
62313480 GGTCTCTAAGCCCGGATACAATTCCAGCATATAGCCTGTG
1 GGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGTG
62313520 GGTCTTTAAGCCCGGATACAATTCCA
1 GGTCTTTAAGCCCGGATACAATTCCA
62313546 AATATCATAC
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 9 0.10
40 85 0.90
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
GGTCTTTAAGCCCGGATACAATTCCAGCATATAGCCTGTG
Found at i:62314811 original size:21 final size:21
Alignment explanation
Indices: 62314786--62314828 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
62314776 CGGCAATTTC
62314786 AATTCATACCT-TTCAACCATT
1 AATTCA-ACCTATTCAACCATT
*
62314807 AATTCAACTTATTCAACCATT
1 AATTCAACCTATTCAACCATT
62314828 A
1 A
62314829 TTTAAACTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTCAACCTATTCAACCATT
Found at i:62314836 original size:21 final size:21
Alignment explanation
Indices: 62314797--62314836 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62314787 ATTCATACCT
*
62314797 TTCAACCATTAATTCAACTTA
1 TTCAACCATTAATTAAACTTA
*
62314818 TTCAACCATTATTTAAACT
1 TTCAACCATTAATTAAACT
62314837 ACTTAACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (21 bp):
TTCAACCATTAATTAAACTTA
Found at i:62321243 original size:40 final size:40
Alignment explanation
Indices: 62321153--62321385 Score: 308
Period size: 40 Copynumber: 5.8 Consensus size: 40
62321143 TTCCAGCGCA
* * * *
62321153 AGCCTACGGGTCTTTAA-CCCAGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
* * *
62321192 AGCTTGCGGGTCTTTATGCCCGAATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* * *
62321232 AGCCTGTGGGTCTTTAAGCCCAGATACAATTCCATCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
62321272 AGCCTGCGGGTCTTTAAACTCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
62321312 AGCCTGCGGGTCTTTAAGCCCGGAGACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
62321352 AGCCTGCGAGTCTTTAGGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
62321386 AATATCATAC
Statistics
Matches: 168, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 15 0.09
40 153 0.91
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:62322664 original size:21 final size:21
Alignment explanation
Indices: 62322639--62322679 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
62322629 CAGCAATTTC
62322639 AATTCATACCT-TTCAACCATG
1 AATTCA-ACCTATTCAACCATG
*
62322660 AATTCAACTTATTCAACCAT
1 AATTCAACCTATTCAACCAT
62322680 CATTTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTATTCAACCATG
Found at i:62322689 original size:21 final size:21
Alignment explanation
Indices: 62322650--62322689 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62322640 ATTCATACCT
* *
62322650 TTCAACCATGAATTCAACTTA
1 TTCAACCATCAATTAAACTTA
*
62322671 TTCAACCATCATTTAAACT
1 TTCAACCATCAATTAAACT
62322690 ACTTAACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (21 bp):
TTCAACCATCAATTAAACTTA
Found at i:62324191 original size:46 final size:46
Alignment explanation
Indices: 62324115--62324239 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
62324105 GGGTTAGGGT
* *
62324115 GCTGATGCCATATCCCAGGCATGGTCTTACACTGAC-TATCATCTCGTA-
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGACTTAT-ATCTCG-AG
* * *
62324163 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTTATGTCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGACTTATATCTCGAG
* *
62324209 GCCGATGCATGTCCCGGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
62324240 AGCGTTCATC
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 45 0.67
47 14 0.21
48 7 0.10
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGACTTATATCTCGAG
Found at i:62330678 original size:107 final size:107
Alignment explanation
Indices: 62330517--62330791 Score: 381
Period size: 107 Copynumber: 2.6 Consensus size: 107
62330507 CCTTACAGGG
* * * ** * *
62330517 GTATTACAGACATTTTACCCTATAGGGGTATTACAATCATTTTATCGTATAGGGGTATTTCGATC
1 GTATTTCAGTCATTTTACCCTAT-GGGGTATTTCTGTCATTTTACCCTATAGGGGTATTTCGATC
* * *
62330582 ATTTTACCTTATAGGGGTATTTCGGTCATTTTAACTTATAAGG
65 ATTTTACCTTACAGGGGTATTTCGGTCATTTTAACCTATAAGA
** *
62330625 GTATTTTGGTCATTTTACCCTATGGGGTATTTCTGTCATTTTACCTTATAGGGGTATTTCGATCA
1 GTATTTCAGTCATTTTACCCTATGGGGTATTTCTGTCATTTTACCCTATAGGGGTATTTCGATCA
* *
62330690 TTTTACCTTACAGGGGTATTTCGGTCATTTTACCCTGTAAGA
66 TTTTACCTTACAGGGGTATTTCGGTCATTTTAACCTATAAGA
*
62330732 GTATTTCAGTCATTTTACCCTATGGGGTATTT-TGGTCATTTTACCCTATGGGGGTATTTC
1 GTATTTCAGTCATTTTACCCTATGGGGTATTTCT-GTCATTTTACCCTATAGGGGTATTTC
62330792 AGTCATACAT
Statistics
Matches: 148, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
106 1 0.01
107 128 0.86
108 19 0.13
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (107 bp):
GTATTTCAGTCATTTTACCCTATGGGGTATTTCTGTCATTTTACCCTATAGGGGTATTTCGATCA
TTTTACCTTACAGGGGTATTTCGGTCATTTTAACCTATAAGA
Found at i:62330775 original size:80 final size:79
Alignment explanation
Indices: 62330498--62330797 Score: 332
Period size: 80 Copynumber: 3.7 Consensus size: 79
62330488 GGGAAAATCA
* * * * * * ** *
62330498 GTCATTTTACCTTACAGGGGTATTACAGACATTTTACCCTATAGGGGTATTACAATCATTTTATC
1 GTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACC
* *
62330563 GTATAGGGGTATTTC
66 CTATA-GAGTATTTC
* * *
62330578 GATCATTTTACCTTATAGGGGTATTTCGGTCATTTTAACTTATAAGGGTATTTTGGTCATTTTAC
1 G-TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTAC
* *
62330643 CCTATGGGGTATTTC
65 CCTATAGAGTATTTC
* *
62330658 TGTCATTTTACCTTATAGGGGTATTTCGATCATTTTACCTTACAGGGGTATTTCGGTCATTTTAC
1 -GTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTAC
*
62330723 CCTGTAAGAGTATTTC
65 CCTAT-AGAGTATTTC
* * * * *
62330739 AGTCATTTTACCCTAT-GGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCAGTCAT
1 -GTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGGTCAT
62330798 ACATGGACCA
Statistics
Matches: 187, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
80 109 0.58
81 78 0.42
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (79 bp):
GTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACC
CTATAGAGTATTTC
Found at i:62330796 original size:27 final size:27
Alignment explanation
Indices: 62330495--62330797 Score: 326
Period size: 27 Copynumber: 11.3 Consensus size: 27
62330485 GTAGGGAAAA
* *
62330495 TCAGTCATTTTACCTTACAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
62330522 ACAGACATTTTACCCTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* * * *
62330549 ACAATCATTTTATCGTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
*
62330576 TC-GATCATTTTACCTTATAGGGGTATT
1 TCAG-TCATTTTACCCTATAGGGGTATT
* * * *
62330603 TCGGTCATTTTAACTTATAAGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
**
62330630 TTGGTCATTTTACCCTAT-GGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
62330656 TCTGTCATTTTACCTTATAGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
* *
62330683 TC-GATCATTTTACCTTACAGGGGTATT
1 TCAG-TCATTTTACCCTATAGGGGTATT
* * * *
62330710 TCGGTCATTTTACCCTGTAAGAGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
62330737 TCAGTCATTTTACCCTAT-GGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
** *
62330763 TTGGTCATTTTACCCTATGGGGGTATT
1 TCAGTCATTTTACCCTATAGGGGTATT
62330790 TCAGTCAT
1 TCAGTCAT
62330798 ACATGGACCA
Statistics
Matches: 235, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
26 45 0.19
27 188 0.80
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.42
Consensus pattern (27 bp):
TCAGTCATTTTACCCTATAGGGGTATT
Found at i:62337753 original size:46 final size:46
Alignment explanation
Indices: 62337703--62337876 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 46
62337693 TTTGGGCATT
*
62337703 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
*** * * ** *
62337749 CGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTC
* * *
62337796 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
* * *
62337842 CGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62337877 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 68 0.66
47 35 0.34
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC
Found at i:62337859 original size:93 final size:93
Alignment explanation
Indices: 62337697--62337869 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
62337687 AGGATGTTTG
* * *
62337697 GGCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
62337762 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
62337790 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
62337855 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
62337870 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:62341305 original size:14 final size:14
Alignment explanation
Indices: 62341286--62341312 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62341276 AAACACATTG
62341286 TGAATCTTTTCTAC
1 TGAATCTTTTCTAC
62341300 TGAATCTTTTCTA
1 TGAATCTTTTCTA
62341313 ACTCTGATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (14 bp):
TGAATCTTTTCTAC
Found at i:62345835 original size:31 final size:31
Alignment explanation
Indices: 62345794--62345903 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
62345784 TTTAACGGTT
* * * *
62345794 ACTGGACCGAAGCCTTTTCATAAATCAAACC
1 ACTGGGCCGAAGCCTTTCCATAAATCATATC
62345825 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTCCATAAATCATATC
*
62345856 ACTGGGCTGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTCCATAAATCATATC
*
62345887 ACTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
62345904 ATTGTAAACG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTCCATAAATCATATC
Found at i:62345988 original size:42 final size:42
Alignment explanation
Indices: 62345929--62346018 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
62345919 ACCCATAGGG
*
62345929 CCATTTCAATAACACATGAAATATCAATGAATGTATGCAAGC
1 CCATTTCAATAACACATGAAATACCAATGAATGTATGCAAGC
*
62345971 CCATTTCAATATCACATGAAATACCAATGAATGTATGCAAGC
1 CCATTTCAATAACACATGAAATACCAATGAATGTATGCAAGC
62346013 CCATTT
1 CCATTT
62346019 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (42 bp):
CCATTTCAATAACACATGAAATACCAATGAATGTATGCAAGC
Found at i:62346240 original size:26 final size:26
Alignment explanation
Indices: 62346163--62346285 Score: 169
Period size: 26 Copynumber: 4.8 Consensus size: 26
62346153 CCTCTTTAAT
**
62346163 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62346188 AACTGGGGCA-AAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
***
62346213 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
62346239 AACTGGGACATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
62346265 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
62346286 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 32 0.38
26 53 0.62
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:62346274 original size:52 final size:51
Alignment explanation
Indices: 62346163--62346285 Score: 203
Period size: 52 Copynumber: 2.4 Consensus size: 51
62346153 CCTCTTTAAT
* *
62346163 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGTCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGACAAAGCCCTTTTCAATA
*
62346213 AACTGGGGCATAAGCCCTTTTTGGTAAACTGGGACATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGACA-AAGCCCTTTTCAATA
62346265 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
62346286 GCACTTCCTC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
50 10 0.15
51 23 0.34
52 35 0.51
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (51 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGACAAAGCCCTTTTCAATA
Found at i:62346360 original size:20 final size:20
Alignment explanation
Indices: 62346335--62346401 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
62346325 TTATGAATTC
*
62346335 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
62346355 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
62346375 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
62346395 ATCATGT
1 ATCATGT
62346402 ATATTGTAAC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:62346366 original size:11 final size:11
Alignment explanation
Indices: 62346335--62346390 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
62346325 TTATGAATTC
62346335 ATCATGTGCAT
1 ATCATGTGCAT
* *
62346346 TTCA--TACAT
1 ATCATGTGCAT
62346355 ATCATGTGCAT
1 ATCATGTGCAT
*
62346366 ATCA--TACAT
1 ATCATGTGCAT
62346375 ATCATGTGCAT
1 ATCATGTGCAT
62346386 ATCAT
1 ATCAT
62346391 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:62347440 original size:47 final size:47
Alignment explanation
Indices: 62347369--62348104 Score: 1238
Period size: 47 Copynumber: 15.6 Consensus size: 47
62347359 CCCTTCGGGA
* * * * * *
62347369 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
62347416 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62347463 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62347510 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347557 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347604 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347651 CTTATCACATATATACACTTTCACATTCATCACATCGGACATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62347698 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62347745 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62347792 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347841 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347888 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62347935 CTTATCACATATATACACTTTCACATTCATCACATCGGCCTTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62347982 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62348031 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62348078 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
62348105 TATTCAAATA
Statistics
Matches: 651, Mismatches: 34, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 562 0.86
49 89 0.14
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62347447 original size:25 final size:25
Alignment explanation
Indices: 62347419--62347497 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
62347409 ACTCGGCCCT
62347419 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
62347444 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATACACTTTC-ACATTC
62347466 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
62347491 ATCACAT
1 ATCACAT
62347498 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:62351459 original size:27 final size:27
Alignment explanation
Indices: 62351429--62351493 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
62351419 GGGCATATTT
62351429 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
62351456 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
62351483 GTCTTTTTACC
1 GTCATTTTACC
62351494 TATTTGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:62351617 original size:29 final size:28
Alignment explanation
Indices: 62351547--62351627 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
62351537 GTAAATCTAC
*
62351547 AAACCAAGGGTATTTC-AGTAA-TTTTAT
1 AAACCAAGGGTATTTCTA-TAATTTTTAG
*
62351574 AAACCAATGGTATTTCTATAATTTTTAG
1 AAACCAAGGGTATTTCTATAATTTTTAG
* *
62351602 AAAGTCAAGGGTATTTCTGTAATTTT
1 AAA-CCAAGGGTATTTCTATAATTTT
62351628 GTAAATCAGG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 18 0.39
28 9 0.20
29 19 0.41
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTATAATTTTTAG
Found at i:62351650 original size:27 final size:27
Alignment explanation
Indices: 62351527--62351841 Score: 226
Period size: 27 Copynumber: 11.7 Consensus size: 27
62351517 CATCCTACAA
* * * *
62351527 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
62351554 GGGTATTTCAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
62351581 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAG
** *
62351610 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
**
62351637 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
62351663 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
62351691 TAGTATTTTGGTAACTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
62351718 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
62351745 GGGTATTTTAGCAATTTTACAGACCA-
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
62351771 AGGTATGTTGGTAATTTTACTAATC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
62351797 AGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
62351824 GGGTATTTTTGTAATTTT
1 GGGTATTTTGGTAATTTT
62351842 GTAAATCGAG
Statistics
Matches: 228, Mismatches: 52, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
26 40 0.18
27 157 0.69
28 16 0.07
29 15 0.07
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:62351864 original size:27 final size:27
Alignment explanation
Indices: 62351834--62352123 Score: 418
Period size: 27 Copynumber: 10.7 Consensus size: 27
62351824 GGGTATTTTT
* * *
62351834 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
62351861 GTAATTCTGTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
62351888 GTAAATCTATAAATCAAAGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
62351915 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
62351942 GTAATTCTTTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
62351969 GTAATTCTTTAAATCAAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
62351996 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
62352023 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
62352050 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
62352077 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
62352104 GTAATTCTACAAATCGAGGG
1 GTAATTCTATAAATCGAGGG
62352124 CATTTCAGTA
Statistics
Matches: 241, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 241 1.00
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:62353358 original size:53 final size:53
Alignment explanation
Indices: 62353289--62353427 Score: 172
Period size: 53 Copynumber: 2.6 Consensus size: 53
62353279 TTTTCCTTTT
* * * *
62353289 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCC-TTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
* *
62353342 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTA
* *
62353395 TAGTAACTCATCAATTCCATGTCTTGACATGGT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGT
62353428 TTTGCATGAT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.03
53 45 0.62
54 1 0.01
55 25 0.34
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTA
Found at i:62353446 original size:55 final size:52
Alignment explanation
Indices: 62353289--62353447 Score: 158
Period size: 53 Copynumber: 3.0 Consensus size: 52
62353279 TTTTCCTTTT
* * *
62353289 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTA
* * *
62353342 TGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTA
* * * * *
62353395 TAGTAACTCATCAATTCCATGTCTTGACATGGTTTTGCATGATTTCCTTGCCT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCT
62353448 GCCATGCCTT
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 45 0.52
54 2 0.02
55 36 0.41
56 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (52 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTA
Found at i:62353568 original size:47 final size:47
Alignment explanation
Indices: 62353460--62353580 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
62353450 CATGCCTTGG
* * *
62353460 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATACTTGTCTTACCAAATGCCATGTTCCAAA
62353507 CATGGTCTTACATGGTATACTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATACTTGTCTTACCAAATGCCATGTTCCAAA
62353554 CATGGTCTTACATGGTATTA-TTGTCTT
1 CATGGTCTTACATGGTA-TACTTGTCTT
62353581 GGTGCCAATG
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATACTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:62355938 original size:43 final size:43
Alignment explanation
Indices: 62355880--62356024 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
62355870 AATGCCGACC
* *
62355880 TCCCGGACATGGTCTTATATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTATG
* * * * *
62355923 TCCTAGACAGGGTCTTACATGGAA-TCAGATA-CGATGCCAATG
1 TCCCAGACATGGTCTTATATGTAATTCA-ATATCGATGCCTATG
* * *
62355965 TCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTG
1 TCCCAGACATGGTCTTATATGT-AAT-TCAATATCGATGCCTATG
*
62356008 TCCCAGACACGGTCTTA
1 TCCCAGACATGGTCTTA
62356025 CACGATATCT
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 30 0.37
43 49 0.60
45 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTATG
Found at i:62355967 original size:42 final size:43
Alignment explanation
Indices: 62355880--62355981 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
62355870 AATGCCGACC
* * * **
62355880 TCCCGGACATGGTCTTATATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACATGGTCTTACATGGAATTCAATATCGATGCCAATG
* *
62355923 TCCTAGACAGGGTCTTACATGGAA-TCAGATA-CGATGCCAATG
1 TCCCAGACATGGTCTTACATGGAATTCA-ATATCGATGCCAATG
62355965 TCCCAGACATGGTCTTA
1 TCCCAGACATGGTCTTA
62355982 TACGTAAATC
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 27 0.55
43 22 0.45
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGGAATTCAATATCGATGCCAATG
Found at i:62359173 original size:40 final size:40
Alignment explanation
Indices: 62359104--62359269 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
62359094 AACCCAAGTA
* *
62359104 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
62359143 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62359183 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
62359223 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62359263 CCTTCGG
1 CCTTCGG
62359270 ATCTTGTCCG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.11
40 105 0.89
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:62372292 original size:28 final size:27
Alignment explanation
Indices: 62372260--62372386 Score: 150
Period size: 28 Copynumber: 4.6 Consensus size: 27
62372250 ATTTGATACC
*
62372260 GAGCACTAAGTGTGCGAAATCGGTCATT
1 GAGCACTAAGTGTGCGAAATTGGT-ATT
* *
62372288 GAGCACTAAGTGTGC-AAGTTGGTTTT
1 GAGCACTAAGTGTGCGAAATTGGTATT
* *
62372314 AAGCACTAAGTGTGC-AAATTGGATTTCT
1 GAGCACTAAGTGTGCGAAATTGG-TAT-T
62372342 GAGCACTAAGTGTGCGAAATTGGTTATT
1 GAGCACTAAGTGTGCGAAATTGG-TATT
*
62372370 GAGCACTAAATGTGCGA
1 GAGCACTAAGTGTGCGA
62372387 GAAAATTTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
26 22 0.25
27 9 0.10
28 47 0.54
29 9 0.10
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (27 bp):
GAGCACTAAGTGTGCGAAATTGGTATT
Found at i:62372328 original size:54 final size:57
Alignment explanation
Indices: 62372261--62372386 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 57
62372251 TTTGATACCG
*
62372261 AGCACTAAGTGTGCGAAATCGG-TCAT-TGAGCACTAAGTGTGC-AAGTTGGTT-TTA
1 AGCACTAAGTGTGCGAAATCGGAT-ATCTGAGCACTAAGTGTGCGAAATTGGTTATTA
* * *
62372315 AGCACTAAGTGTGC-AAATTGGATTTCTGAGCACTAAGTGTGCGAAATTGGTTATTG
1 AGCACTAAGTGTGCGAAATCGGATATCTGAGCACTAAGTGTGCGAAATTGGTTATTA
*
62372371 AGCACTAAATGTGCGA
1 AGCACTAAGTGTGCGA
62372387 GAAAATTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
53 7 0.11
54 31 0.50
55 8 0.13
56 15 0.24
57 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAAATCGGATATCTGAGCACTAAGTGTGCGAAATTGGTTATTA
Found at i:62372371 original size:82 final size:81
Alignment explanation
Indices: 62372235--62372384 Score: 228
Period size: 82 Copynumber: 1.8 Consensus size: 81
62372225 TTTGAGAGAT
* *
62372235 GCACTAAATGTGCAAATTTGATACCGAGCACTAAGTGTGCGAAATCGGTCATTGAGCACTAAGTG
1 GCACTAAATGTGCAAATTGGATACCGAGCACTAAGTGTGCGAAATCGGTCATTGAGCACTAAATG
62372300 TGCAAGTTGGTTTTAA
66 TGCAAGTTGGTTTTAA
* * * * *
62372316 GCACTAAGTGTGCAAATTGGATTTCTGAGCACTAAGTGTGCGAAATTGGTTATTGAGCACTAAAT
1 GCACTAAATGTGCAAATTGGA-TACCGAGCACTAAGTGTGCGAAATCGGTCATTGAGCACTAAAT
62372381 GTGC
65 GTGC
62372385 GAGAAAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
81 19 0.31
82 42 0.69
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (81 bp):
GCACTAAATGTGCAAATTGGATACCGAGCACTAAGTGTGCGAAATCGGTCATTGAGCACTAAATG
TGCAAGTTGGTTTTAA
Found at i:62378713 original size:82 final size:81
Alignment explanation
Indices: 62378597--62378752 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
62378587 AAATTGTACA
* * * *
62378597 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
62378661 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62378678 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
62378743 TGCGAGTTGA
65 TGCGAATTGA
62378753 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62378720 original size:55 final size:52
Alignment explanation
Indices: 62378596--62378749 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
62378586 TAAATTGTAC
* *
62378596 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
62378649 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
62378704 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
62378750 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:62378754 original size:27 final size:27
Alignment explanation
Indices: 62378597--62378752 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
62378587 AAATTGTACA
*
62378597 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
62378624 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
62378651 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
62378678 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
62378706 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
62378733 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
62378753 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:62378763 original size:27 final size:27
Alignment explanation
Indices: 62378589--62378773 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
62378579 GCGGGATTAA
*
62378589 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
62378616 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
62378643 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
62378670 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
62378698 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
62378725 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
62378752 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
62378774 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:62378764 original size:82 final size:81
Alignment explanation
Indices: 62378589--62378773 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
62378579 GCGGGATTAA
* * * *
62378589 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
62378654 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
62378670 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
62378734 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
62378752 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
62378774 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:62383257 original size:28 final size:26
Alignment explanation
Indices: 62383223--62383377 Score: 114
Period size: 28 Copynumber: 5.6 Consensus size: 26
62383213 ATTTGATACC
62383223 GAACACTAAGTGTGCGAAATTGGTCATT
1 GAACACTAAGTGTGC-AAATTGGT-ATT
* * *
62383251 GAGCACTAAGTGTGCAAGTTGGTTTT
1 GAACACTAAGTGTGCAAATTGGTATT
* *
62383277 AAGAACTAACTAAGTGTGCAAGTTGGTTTT
1 --GAAC--ACTAAGTGTGCAAATTGGTATT
* *
62383307 AAAAACTAAGTGTGCAAATTGG-ACTT
1 GAACACTAAGTGTGCAAATTGGTA-TT
* *
62383333 CCGAGCACTAAGTGTGCGAAATCGGTTATT
1 --GAACACTAAGTGTGC-AAATTGG-TATT
*
62383363 GACCACTAAGTGTGC
1 GAACACTAAGTGTGC
62383378 GAGAAAATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
26 21 0.20
27 7 0.07
28 45 0.43
29 6 0.06
30 24 0.23
31 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
GAACACTAAGTGTGCAAATTGGTATT
Found at i:62383291 original size:30 final size:30
Alignment explanation
Indices: 62383255--62383315 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
62383245 GTCATTGAGC
*
62383255 ACTAAGTGTGCAAGTTGGTTTTAAGAACTA
1 ACTAAGTGTGCAAGTTGGTTTTAAAAACTA
62383285 ACTAAGTGTGCAAGTTGGTTTTAAAAACTA
1 ACTAAGTGTGCAAGTTGGTTTTAAAAACTA
62383315 A
1 A
62383316 GTGTGCAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (30 bp):
ACTAAGTGTGCAAGTTGGTTTTAAAAACTA
Found at i:62383320 original size:26 final size:29
Alignment explanation
Indices: 62383255--62383328 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 29
62383245 GTCATTGAGC
62383255 ACTAAGTGTGCAAGTTGGTTTTAAGAACTA
1 ACTAAGTGTGCAAGTTGGTTTTAAGAAC-A
62383285 ACTAAGTGTGCAAGTTGGTTTT-A-AA-A
1 ACTAAGTGTGCAAGTTGGTTTTAAGAACA
*
62383311 ACTAAGTGTGCAAATTGG
1 ACTAAGTGTGCAAGTTGG
62383329 ACTTCCGAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 18 0.42
28 2 0.05
29 1 0.02
30 22 0.51
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.32
Consensus pattern (29 bp):
ACTAAGTGTGCAAGTTGGTTTTAAGAACA
Found at i:62383371 original size:56 final size:55
Alignment explanation
Indices: 62383207--62383377 Score: 166
Period size: 56 Copynumber: 3.1 Consensus size: 55
62383197 TGCACTAAAC
* * * *
62383207 GTGCAAATTTGATACCGAACACTAAGTGTGCGAAATTGGTCATTGAGCACTAAGT
1 GTGCAAATTGGATTCCGAACACTAAGTGTGCGAAATTGGTTATTGAACACTAAGT
* * ** * * *
62383262 GTGCAAGTTGGTTTTAAGAACTAACTAAGTGTGC-AAGTTGGTT-TTAAAAACTAAGT
1 GTGCAAATTGG-ATTCCGAAC--ACTAAGTGTGCGAAATTGGTTATTGAACACTAAGT
* * *
62383318 GTGCAAATTGGACTTCCGAGCACTAAGTGTGCGAAATCGGTTATTGACCACTAAGT
1 GTGCAAATTGGA-TTCCGAACACTAAGTGTGCGAAATTGGTTATTGAACACTAAGT
62383374 GTGC
1 GTGC
62383378 GAGAAAATTT
Statistics
Matches: 89, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
54 11 0.12
55 16 0.18
56 44 0.49
57 7 0.08
58 11 0.12
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (55 bp):
GTGCAAATTGGATTCCGAACACTAAGTGTGCGAAATTGGTTATTGAACACTAAGT
Found at i:62393515 original size:44 final size:40
Alignment explanation
Indices: 62393364--62393523 Score: 142
Period size: 40 Copynumber: 3.9 Consensus size: 40
62393354 GACTATGTTT
** * *
62393364 GGCACTAAGTGTGCGTTTTAAAATAGCTTCAGCTATAA-A
1 GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAGA
* * * *
62393403 TAGCACTAAGTGTGCGAATTGGAATAGCTTTGGCTATATGA
1 -GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAGA
* * *
62393444 GGCACTAAGTGTGCGACATCGAGATAGCTTCGGTTAGTTAAGA
1 GGCACTAAGTGTGCGA-ATTGAAATAGCTTCGGCTA--TAAGA
**
62393487 TGGCACTAAGTGTGCGAGATTGTTATAGCTTCGGCTA
1 -GGCACTAAGTGTGCGA-ATTGAAATAGCTTCGGCTA
62393524 ATCATTAATG
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
40 45 0.47
41 15 0.16
43 4 0.04
44 31 0.33
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAGA
Found at i:62396397 original size:25 final size:26
Alignment explanation
Indices: 62396345--62396397 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
62396335 ATTCAACACC
* * **
62396345 TAGGGGTATTTTGGTCATTTTTTTCT
1 TAGGGGCATTTTGGTCAATTTTCCCT
62396371 TAGGGGCATTTTGGT-AATTTTCCCT
1 TAGGGGCATTTTGGTCAATTTTCCCT
62396396 TA
1 TA
62396398 ATTATGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.15, C:0.11, G:0.23, T:0.51
Consensus pattern (26 bp):
TAGGGGCATTTTGGTCAATTTTCCCT
Found at i:62396597 original size:54 final size:54
Alignment explanation
Indices: 62396533--62396641 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
62396523 CTCCCTAGAT
62396533 CCAATCCTAGACATGCATATACCCGTTGCCACACCTTAACCCTTTGACTTATCA
1 CCAATCCTAGACATGCATATACCCGTTGCCACACCTTAACCCTTTGACTTATCA
62396587 CCAATCCTAGACATGCATATACCCGTTGCCACACCTTAACCCTTTGACTTATCA
1 CCAATCCTAGACATGCATATACCCGTTGCCACACCTTAACCCTTTGACTTATCA
62396641 C
1 C
62396642 TAGGCCCAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.28, C:0.36, G:0.09, T:0.28
Consensus pattern (54 bp):
CCAATCCTAGACATGCATATACCCGTTGCCACACCTTAACCCTTTGACTTATCA
Done.