Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 188 of 362
Found at i:62396776 original size:29 final size:29
Alignment explanation
Indices: 62396716--62396789 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
62396706 AATTATATCC
* * *
62396716 ATATGGCCCATT-CGCTCAAACCACCTGT
1 ATATGGCCCATTAGGCCCAAACCACATGT
* *
62396744 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAACCACATGT
*
62396773 ATATGGCTCATTAGGCC
1 ATATGGCCCATTAGGCC
62396790 TAGTCATATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 12 0.31
29 27 0.69
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAACCACATGT
Found at i:62397027 original size:8 final size:8
Alignment explanation
Indices: 62397014--62397064 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
62397004 GTAGCCAAAC
62397014 TTTCGGCT
1 TTTCGGCT
62397022 TTTCGGCAT
1 TTTCGGC-T
62397031 TTT-GGCT
1 TTTCGGCT
* *
62397038 TTTTGGCA
1 TTTCGGCT
* *
62397046 TTTCAGCA
1 TTTCGGCT
62397054 TTTCGGCT
1 TTTCGGCT
62397062 TTT
1 TTT
62397065 GTCGATCGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 4 0.11
8 28 0.78
9 4 0.11
ACGTcount: A:0.08, C:0.20, G:0.22, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:62400048 original size:28 final size:28
Alignment explanation
Indices: 62399997--62400120 Score: 115
Period size: 29 Copynumber: 4.4 Consensus size: 28
62399987 ATCCCTTCGT
* * *
62399997 ACATGCATCTGGCCCATTAAGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
*
62400025 ATATTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
* *
62400054 ACCTGT-ATATGGCCTATTAGGCCCAAATC
1 ACAT-TCATATGGCCCATTAGGCCC-AATC
* * * * *
62400083 ACATTTATACGGCCCGTTAGGCCTAGTC
1 ACATTCATATGGCCCATTAGGCCCAATC
62400111 ACATTCATAT
1 ACATTCATAT
62400121 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 34 0.44
29 40 0.52
30 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:62400338 original size:16 final size:16
Alignment explanation
Indices: 62400313--62400364 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
62400303 GTAGCCAAAC
*
62400313 TTTTGACTTTTCGGCA
1 TTTTGGCTTTTCGGCA
**
62400329 TTTTGGCTTTTCTTCA
1 TTTTGGCTTTTCGGCA
* *
62400345 TTTCGGCATTTCGGC-
1 TTTTGGCTTTTCGGCA
62400360 TTTTG
1 TTTTG
62400365 CTGATCCATA
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.08, C:0.19, G:0.19, T:0.54
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:62404863 original size:66 final size:64
Alignment explanation
Indices: 62404736--62404870 Score: 166
Period size: 65 Copynumber: 2.1 Consensus size: 64
62404726 CATGGTCACA
*
62404736 CACACGAGCGTGTGACTGGCTGTGTGGTACAAGTCAGTATACCCCTAATTGGCACACGGCCTAG
1 CACACAAGCGTGTGACTGGCTGTGTGGTACAAGTCAGTATACCCCTAATTGGCACACGGCCTAG
* * * **
62404800 CACACAAGCGTGTGACTTGG-TCGTGTTGTATAAGTCAGTATACTCTCC-AGTTTTCACACGGCC
1 CACACAAGCGTGTGAC-TGGCT-GTGTGGTACAAGTCAGTATAC-C-CCTAATTGGCACACGGCC
62404863 TAG
62 TAG
62404866 CACAC
1 CACAC
62404871 GGACATGTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
64 16 0.26
65 22 0.36
66 21 0.34
67 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (64 bp):
CACACAAGCGTGTGACTGGCTGTGTGGTACAAGTCAGTATACCCCTAATTGGCACACGGCCTAG
Found at i:62405794 original size:13 final size:13
Alignment explanation
Indices: 62405745--62405814 Score: 65
Period size: 13 Copynumber: 5.4 Consensus size: 13
62405735 TTGACATTTT
62405745 CATTTCA-AGTATC
1 CATTTCATA-TATC
*
62405758 CATTCCA-ATATC
1 CATTTCATATATC
62405770 CATTTTCATATATC
1 CA-TTTCATATATC
*
62405784 CATTTCGTATAAT-
1 CATTTCATAT-ATC
62405797 CATTTCATATATC
1 CATTTCATATATC
*
62405810 TATTT
1 CATTT
62405815 TCACCCGATA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
12 8 0.17
13 31 0.65
14 9 0.19
ACGTcount: A:0.30, C:0.21, G:0.03, T:0.46
Consensus pattern (13 bp):
CATTTCATATATC
Found at i:62405922 original size:25 final size:25
Alignment explanation
Indices: 62405859--62405926 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
62405849 ACGTAGGAAC
* *
62405859 AATGCTCACACAAGCTGTGACGGTA
1 AATGCTCACACGAGCTGTAACGGTA
* ** * *
62405884 AATGCTAAGGCGAGTTGTAATGGTA
1 AATGCTCACACGAGCTGTAACGGTA
62405909 AATGCTCACACGAGCTGT
1 AATGCTCACACGAGCTGT
62405927 GGGTCGGGAT
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (25 bp):
AATGCTCACACGAGCTGTAACGGTA
Found at i:62411460 original size:21 final size:21
Alignment explanation
Indices: 62411436--62411505 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
62411426 CTATGAACTA
62411436 TGTGATCTGAACTCATTAAGT
1 TGTGATCTGAACTCATTAAGT
* * ** *
62411457 TGTGGTCTCAGTTCATGATA-T
1 TGTGATCTGAACTCATTA-AGT
62411478 ATGTGACATCTGAACTCATTAAGT
1 -TGTG--ATCTGAACTCATTAAGT
62411502 TGTG
1 TGTG
62411506 GTTTAAGTTC
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 14 0.41
22 5 0.15
23 5 0.15
24 10 0.29
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (21 bp):
TGTGATCTGAACTCATTAAGT
Found at i:62411496 original size:45 final size:45
Alignment explanation
Indices: 62411440--62411530 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
62411430 GAACTATGTG
*
62411440 ATCTGAACTCATTAAGTTGTGGTCTCAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
* *
62411485 ATCTGAACTCATTAAGTTGTGGTTTAAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
62411530 A
1 A
62411531 CATGTTTTGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATGTGAC
Found at i:62419524 original size:49 final size:49
Alignment explanation
Indices: 62419467--62419654 Score: 207
Period size: 49 Copynumber: 3.8 Consensus size: 49
62419457 TAGCCGAAGC
* *
62419467 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGGGACCAAT
1 TATCTGGTACGCATAGTAACCTGCACTTAGTACTACACATGGGACCAAT
* *** * *
62419516 AATCTGGTACATGTAGTAACCTACACTTAGTACTACACA-GGTGATCACAGT
1 TATCTGGTACGCATAGTAACCTGCACTTAGTACTACACATGG-GA-C-CAAT
* * *
62419567 TTTCGGGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACGCATAGTAACCTGCACTTAGTACTACACATGGGACCAAT
* * * *
62419616 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACGCATAGTAACCTGCACTTAGTACTACACA
62419655 CGTGACCTCA
Statistics
Matches: 113, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 2 0.02
49 71 0.63
50 2 0.02
51 37 0.33
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACGCATAGTAACCTGCACTTAGTACTACACATGGGACCAAT
Found at i:62419650 original size:100 final size:100
Alignment explanation
Indices: 62419472--62419659 Score: 295
Period size: 100 Copynumber: 1.9 Consensus size: 100
62419462 GAAGCTATCT
* * * * *
62419472 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGGGACCAATAATCTGGTACATGTAGTAACC
1 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACC
*
62419537 TACACTTAGTACTACACAGGTGATCACAGTTTTCG
66 TACACTTAGTACTACACACGTGATCACAGTTTTCG
* *
62419572 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACC
*
62419637 TGCACTTAGTACTACACACGTGA
66 TACACTTAGTACTACACACGTGA
62419660 CCTCACAATA
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAACC
TACACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:62422170 original size:15 final size:15
Alignment explanation
Indices: 62422114--62422178 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
62422104 TAAAGATAAC
*
62422114 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
62422128 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
62422143 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
62422158 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
62422173 AAGAAA
1 AAGAAA
62422179 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:62422180 original size:30 final size:31
Alignment explanation
Indices: 62422114--62422182 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
62422104 TAAAGATAAC
*
62422114 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
62422144 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
62422173 AAGAAACCCA
1 AAGAAACCCA
62422183 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:62425080 original size:49 final size:48
Alignment explanation
Indices: 62425008--62425182 Score: 188
Period size: 49 Copynumber: 3.5 Consensus size: 48
62424998 CTGGTACCCT
* **
62425008 TAGTAGCCTGCACTTAGTACTACACATGGGACCAATAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGAGACCAAT-ATCCGGTACACG
* * * * * * *
62425057 TAGTAGCCTACACTTATTACTACACATGTGATCACAGTTTACCGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGAGA-C-CAATAT-CCGGTACACG
*
62425108 TAGTAGCCTGCACTTAGTACTACACATGATACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGAGACCAA-TATCCGGTACACG
* *
62425157 TAGTAGCTTGCACTTAGTATTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
62425183 CGTGACCTCA
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
49 62 0.60
50 5 0.05
51 36 0.35
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGAGACCAATATCCGGTACACG
Found at i:62425117 original size:100 final size:100
Alignment explanation
Indices: 62425008--62425187 Score: 270
Period size: 100 Copynumber: 1.8 Consensus size: 100
62424998 CTGGTACCCT
* *
62425008 TAGTAGCCTGCACTTAGTACTACACATGGGACCAATAATCTAGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCAGTACACGTAGTAGCCTACACTTA
* *
62425073 TTACTACACATGTGATCACAGTTTACCGGTACGCA
66 GTACTACACACGTGATCACAGTTTACCGGTACGCA
* * * * *
62425108 TAGTAGCCTGCACTTAGTACTACACATGATACCAATTATCCGGTACACGTAGTAGCTTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCAGTACACGTAGTAGCCTACACTTA
*
62425173 GTATTACACACGTGA
66 GTACTACACACGTGA
62425188 CCTCACAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGAGACCAATAATCCAGTACACGTAGTAGCCTACACTTA
GTACTACACACGTGATCACAGTTTACCGGTACGCA
Found at i:62436896 original size:61 final size:58
Alignment explanation
Indices: 62436831--62436946 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
62436821 AGTAATTATC
* * *
62436831 TTAATATTTAATTTAATTTAATATTTATCTGATAGACAAATATTCTATTAATTTAATAGAT
1 TTAATATTAAATTTAATCTAATATTTATCT--TA-ACAAATATTATATTAATTTAATAGAT
* *
62436892 TTAATATTAAATTTAATCTAATATTTATCTTAATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTAACAAATATTATATTAATTTAATA
62436947 TTAAAGTGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 20 0.40
59 2 0.04
61 28 0.56
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (58 bp):
TTAATATTAAATTTAATCTAATATTTATCTTAACAAATATTATATTAATTTAATAGAT
Found at i:62438858 original size:40 final size:40
Alignment explanation
Indices: 62438828--62439055 Score: 377
Period size: 40 Copynumber: 5.7 Consensus size: 40
62438818 GCTTCTCACT
62438828 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
62438868 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
62438908 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
62438948 CAATTGCCTTCGAGACTTGGCCCGGTTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
62438988 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
62439028 CAAATGCCTTCGGG-CTTAGACCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
62439056 CAATCCGAAT
Statistics
Matches: 177, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 12 0.07
40 165 0.93
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:62446961 original size:40 final size:39
Alignment explanation
Indices: 62446905--62447098 Score: 262
Period size: 40 Copynumber: 4.9 Consensus size: 39
62446895 GATATAGCTT
*
62446905 CTCGCTCAAATGCCTTCGAGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCG-GACTTAGCCCGGTTATAGTAA
* *
62446945 CTCGCACAATTTCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATAGTAA
* * *
62446985 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAATAA
1 CTCGCACAAATGCCTTC-GGACTTAGCCCGGTTATAGTAA
* *
62447025 CTCCCACAAATGCCTTCGGAACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGG-ACTTAGCCCGGTTATAGTAA
* *
62447065 CTCGCACAAATGCCTTTGGGCTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGACTTAGCCCGGTTAT
62447099 CAATCCGAAT
Statistics
Matches: 137, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 15 0.11
40 121 0.88
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (39 bp):
CTCGCACAAATGCCTTCGGACTTAGCCCGGTTATAGTAA
Found at i:62450107 original size:42 final size:42
Alignment explanation
Indices: 62450027--62450181 Score: 157
Period size: 42 Copynumber: 3.7 Consensus size: 42
62450017 AATAACATGC
* * * ** *
62450027 CAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCACAT
1 CAACGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * * * *
62450069 CAATGCCATATCCCAAATATGGTCTTATACGAATTCTCATTT
1 CAACGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* * * *
62450111 CGACGCCATGTCCTAGATATAGTCTTACACGAAATCTCATAT
1 CAACGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
* *
62450153 CAACACCATATCCCGGATATGGTCTTACA
1 CAACGCCATATCCCAGATATGGTCTTACA
62450182 TGATAACTCA
Statistics
Matches: 87, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (42 bp):
CAACGCCATATCCCAGATATGGTCTTACACGAAATCTCATAT
Found at i:62452573 original size:8 final size:8
Alignment explanation
Indices: 62452560--62452588 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
62452550 TCTTTAGCCA
62452560 TAATGCCT
1 TAATGCCT
62452568 TAATGCCT
1 TAATGCCT
62452576 TAATGCCT
1 TAATGCCT
62452584 TAATG
1 TAATG
62452589 ATTTCATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (8 bp):
TAATGCCT
Found at i:62456291 original size:5 final size:5
Alignment explanation
Indices: 62456272--62456309 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
62456262 TTATCATCCT
62456272 TTTAA -TTAA -TTAA TTTAA TTTAA TTTAA TTTCAA TTTA
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT-AA TTTA
62456310 GTCCCTACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 8 0.26
5 18 0.58
6 5 0.16
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTAA
Found at i:62465576 original size:46 final size:43
Alignment explanation
Indices: 62465515--62465677 Score: 141
Period size: 46 Copynumber: 3.6 Consensus size: 43
62465505 ATTGAGACGA
* *
62465515 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGAT
1 GTGCCAGTGT-AGACATGTCTGGGACATGCATCAG-CTACAAGAT
* *
62465559 GTTAGCCAGTGTCAGACATGTCTGGGACATGCGTCTGCTACAAGAT
1 G-T-GCCAGTGT-AGACATGTCTGGGACATGCATCAGCTACAAGAT
* * *
62465605 GTGCTAGTGTAGGACATGTCTGGGACATGCATCGGC-ACAGTTACAT
1 GTGCCAGTGTA-GACATGTCTGGGACATGCATCAGCTACA---AGAT
* *
62465651 GTGTCAGTGTAAGACCTGTCTGGGACA
1 GTGCCAGTGT-AGACATGTCTGGGACA
62465678 CGGCATCGAC
Statistics
Matches: 99, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 4 0.04
44 30 0.30
45 4 0.04
46 60 0.61
47 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
GTGCCAGTGTAGACATGTCTGGGACATGCATCAGCTACAAGAT
Found at i:62465629 original size:44 final size:43
Alignment explanation
Indices: 62465515--62465637 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 43
62465505 ATTGAGACGA
*
62465515 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGAT
1 GTGCTAGTGT-AGACATGTCTGGGACATGCATCAGCCTCAAGAT
* * *
62465559 GTTAGCCAGTGTCAGACATGTCTGGGACATGCGTCTG-CTACAAGAT
1 G-T-GCTAGTGT-AGACATGTCTGGGACATGCATCAGCCT-CAAGAT
62465605 GTGCTAGTGTAGGACATGTCTGGGACATGCATC
1 GTGCTAGTGTA-GACATGTCTGGGACATGCATC
62465638 GGCACAGTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 4 0.06
46 35 0.51
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (43 bp):
GTGCTAGTGTAGACATGTCTGGGACATGCATCAGCCTCAAGAT
Found at i:62469286 original size:11 final size:11
Alignment explanation
Indices: 62469270--62469295 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
62469260 TCTGTGTGTT
62469270 TTTTATTTTTA
1 TTTTATTTTTA
62469281 TTTTATTTTTA
1 TTTTATTTTTA
62469292 TTTT
1 TTTT
62469296 TTCACAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:62478429 original size:19 final size:19
Alignment explanation
Indices: 62478405--62478443 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
62478395 TTATGAGATT
62478405 GAATTAATTGTTTGAATTG
1 GAATTAATTGTTTGAATTG
62478424 GAATTAATTGTTTGAATTG
1 GAATTAATTGTTTGAATTG
62478443 G
1 G
62478444 CATAGAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (19 bp):
GAATTAATTGTTTGAATTG
Found at i:62480856 original size:54 final size:55
Alignment explanation
Indices: 62480715--62480868 Score: 197
Period size: 55 Copynumber: 2.8 Consensus size: 55
62480705 TCGTCTTATG
* * ** *
62480715 AACTCACCAATGCAATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTACAGT
* *
62480770 AACTCATCAATGCCATGTC-TGGACATGGTCTTACATGATTTCCTTGCCTTACAG-
1 AACTCATCAATGCCATGCCTTGG-CATGGTCTTACATGATATCCTTGCCTTACAGT
*
62480824 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
62480869 ATCTTACCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
54 41 0.48
55 43 0.50
56 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (55 bp):
AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTACAGT
Found at i:62480875 original size:54 final size:54
Alignment explanation
Indices: 62480715--62480875 Score: 175
Period size: 54 Copynumber: 2.9 Consensus size: 54
62480705 TCGTCTTATG
* * ** *
62480715 AACTCACCAATGCAATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGT
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTT--CTTACAGT
* * *
62480770 AACTCATCAATGCCATGTC-TGGACATGGTCTTACATGATTTCCTTGCCTTACAG-
1 AACTCATCAATGCCATGCCTTGG-CATGGTCTTACATGATATCCTT-TCTTACAGT
*
62480824 AACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTAC
1 AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT-TCTTAC
62480876 CAAATGCCAT
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
54 46 0.52
55 39 0.44
56 4 0.04
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (54 bp):
AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTTCTTACAGT
Found at i:62483918 original size:67 final size:67
Alignment explanation
Indices: 62483810--62483950 Score: 282
Period size: 67 Copynumber: 2.1 Consensus size: 67
62483800 AACTATGAAA
62483810 TTTTAATCTAAGGGACTTCGATGGTAATTAGACCAACTAAAGTGATATTGGATATTTATGAACAT
1 TTTTAATCTAAGGGACTTCGATGGTAATTAGACCAACTAAAGTGATATTGGATATTTATGAACAT
62483875 GG
66 GG
62483877 TTTTAATCTAAGGGACTTCGATGGTAATTAGACCAACTAAAGTGATATTGGATATTTATGAACAT
1 TTTTAATCTAAGGGACTTCGATGGTAATTAGACCAACTAAAGTGATATTGGATATTTATGAACAT
62483942 GG
66 GG
62483944 TTTTAAT
1 TTTTAAT
62483951 GAAATCAATA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 74 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (67 bp):
TTTTAATCTAAGGGACTTCGATGGTAATTAGACCAACTAAAGTGATATTGGATATTTATGAACAT
GG
Found at i:62486526 original size:79 final size:81
Alignment explanation
Indices: 62486390--62486574 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
62486380 TTGAATGATG
* *
62486390 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
62486454 TGTGCGAG-ATACTA-A
66 TGTGCGAGTA-ACTATA
* * * **
62486469 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
62486531 ATTGTGCGAGTAACTATA
64 ATTGTGCGAGTAACTATA
* *
62486549 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62486575 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGTAACTATA
Found at i:62486581 original size:40 final size:40
Alignment explanation
Indices: 62486391--62486593 Score: 193
Period size: 40 Copynumber: 5.1 Consensus size: 40
62486381 TGAATGATGT
* * * *
62486391 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAACTATAA
* *
62486431 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-ATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTA-ACTATA-A
*
62486471 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAA
* *
62486509 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTAACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAA
* ** * *
62486550 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAA
62486590 CCGG
1 CCGG
62486594 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
39 34 0.25
40 93 0.68
41 10 0.07
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAACTATAA
Found at i:62486596 original size:79 final size:79
Alignment explanation
Indices: 62486443--62486607 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
62486433 GGACTAAGAT
* * **
62486443 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
62486508 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
62486522 CCGAAGGCAATTGTGCGAG-TAACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCAATTGTGCGAGAT-ACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
* *
62486584 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
62486601 CCGAAGG
1 CCGAAGG
62486608 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62489975 original size:56 final size:54
Alignment explanation
Indices: 62489877--62490032 Score: 179
Period size: 56 Copynumber: 2.8 Consensus size: 54
62489867 TTGATGACAC
* * * *
62489877 GATACATGCTAGGTCCAGGAGCTTGTGTAGCCCCGTTAAGAGGCAT-GTAATTATGT
1 GATACACGCTAGGTCCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGT-A--ATGT
* *
62489933 GGTACACGCTAGGTCCAGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAATGT
1 GATACACGCTAGGTCCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATGT
* * *
62489987 GATACACGCTAGGTCCGGGTGCTCATATGTAGCCCTATTGAGAGGC
1 GATACACGCTAGGTCCAGGAGCT--TATGTAGCCCTGTTGAGAGGC
62490033 GTGCTTTGTC
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 24 0.28
56 61 0.70
57 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.26
Consensus pattern (54 bp):
GATACACGCTAGGTCCAGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATGT
Found at i:62491714 original size:39 final size:40
Alignment explanation
Indices: 62491669--62491836 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
62491659 CGGGGTTTAG
* * *
62491669 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
62491708 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
62491748 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
62491788 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
62491829 CCGGATAT
1 CCGGATAT
62491837 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:62491819 original size:41 final size:40
Alignment explanation
Indices: 62491692--62491836 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
62491682 CTCGCACAAG
* * * * *
62491692 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
62491732 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
62491772 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
62491813 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
62491837 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:62494902 original size:30 final size:30
Alignment explanation
Indices: 62494856--62494915 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62494846 TTCCCGAGCC
62494856 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
62494886 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
62494916 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:62494947 original size:46 final size:46
Alignment explanation
Indices: 62494897--62494993 Score: 194
Period size: 46 Copynumber: 2.1 Consensus size: 46
62494887 AGGGGCAAAA
62494897 ATGTAATTTTGCCAAAGTTCGTATTAAATGTTGTTTTGATGAATGT
1 ATGTAATTTTGCCAAAGTTCGTATTAAATGTTGTTTTGATGAATGT
62494943 ATGTAATTTTGCCAAAGTTCGTATTAAATGTTGTTTTGATGAATGT
1 ATGTAATTTTGCCAAAGTTCGTATTAAATGTTGTTTTGATGAATGT
62494989 ATGTA
1 ATGTA
62494994 TTAAATAAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.29, C:0.06, G:0.20, T:0.45
Consensus pattern (46 bp):
ATGTAATTTTGCCAAAGTTCGTATTAAATGTTGTTTTGATGAATGT
Found at i:62498625 original size:16 final size:16
Alignment explanation
Indices: 62498575--62498625 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
62498565 CCCTATTTGA
*
62498575 CATTTTCAACAAAATT
1 CATTTACAACAAAATT
*
62498591 CACTTTAC-A-AAAGTT
1 CA-TTTACAACAAAATT
62498606 -ATTTACAACAAAATT
1 CATTTACAACAAAATT
62498621 CATTT
1 CATTT
62498626 TCTTCCATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
13 5 0.18
14 2 0.07
15 10 0.36
16 7 0.25
17 4 0.14
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (16 bp):
CATTTACAACAAAATT
Found at i:62510718 original size:49 final size:49
Alignment explanation
Indices: 62510646--62510739 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
62510636 AAGGAGCCTC
* *
62510646 GTCAGTCTGTGTCTTGGGTGATAGCCACTCTAAATTGGGTTTAATCTTT
1 GTCAGTCAGTGTCTTGGGTGATAGCCACTCCAAATTGGGTTTAATCTTT
*
62510695 GTCAGTCAGTGTCTTGGGTGATAGCCACTCCGAATTGGGTTTAAT
1 GTCAGTCAGTGTCTTGGGTGATAGCCACTCCAAATTGGGTTTAAT
62510740 ATTTCTTTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.19, C:0.17, G:0.27, T:0.37
Consensus pattern (49 bp):
GTCAGTCAGTGTCTTGGGTGATAGCCACTCCAAATTGGGTTTAATCTTT
Found at i:62519219 original size:27 final size:27
Alignment explanation
Indices: 62519189--62519243 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
62519179 CTCTAATTGG
*
62519189 TAAAATGACTATTATGCCCCTATGTGA
1 TAAAAAGACTATTATGCCCCTATGTGA
* *
62519216 TAAAAAGACTGTTTTGCCCCTATGTGA
1 TAAAAAGACTATTATGCCCCTATGTGA
62519243 T
1 T
62519244 GTATGATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (27 bp):
TAAAAAGACTATTATGCCCCTATGTGA
Found at i:62528949 original size:14 final size:15
Alignment explanation
Indices: 62528913--62528949 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
62528903 GAAAGGGTCC
62528913 AGTTGAACCATACTG
1 AGTTGAACCATACTG
*
62528928 -GTTGAACCATATTG
1 AGTTGAACCATACTG
62528942 AGTT-AACC
1 AGTTGAACC
62528950 GAACCAGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (15 bp):
AGTTGAACCATACTG
Found at i:62529957 original size:32 final size:32
Alignment explanation
Indices: 62529918--62529982 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
62529908 CTTAACATAG
62529918 TCTTTTATATGCTTATTAGATTAATTAATCGT
1 TCTTTTATATGCTTATTAGATTAATTAATCGT
62529950 TCTTTTATATGCTTATTAGATTAATTAATCGT
1 TCTTTTATATGCTTATTAGATTAATTAATCGT
62529982 T
1 T
62529983 TGAATTGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (32 bp):
TCTTTTATATGCTTATTAGATTAATTAATCGT
Found at i:62536554 original size:22 final size:24
Alignment explanation
Indices: 62536509--62536554 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
62536499 TAATCTTTAA
62536509 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
62536533 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
62536555 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:62538923 original size:20 final size:20
Alignment explanation
Indices: 62538898--62538936 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
62538888 GAATTGCCCC
62538898 TGTAGGGTAGAATTACTGAT
1 TGTAGGGTAGAATTACTGAT
62538918 TGTAGGGTAGAATTACTGA
1 TGTAGGGTAGAATTACTGA
62538937 ATACCTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (20 bp):
TGTAGGGTAGAATTACTGAT
Found at i:62538982 original size:27 final size:27
Alignment explanation
Indices: 62538952--62539241 Score: 196
Period size: 27 Copynumber: 10.7 Consensus size: 27
62538942 TTTGATTTAC
*
62538952 AAAATTACCGAAATACCCCTAGTTTGT
1 AAAATTACTGAAATACCCCTAGTTTGT
* *
62538979 AAAATTAC-AAAAGTACCCCTGGTTTGT
1 AAAATTACTGAAA-TACCCCTAGTTTGT
** *** *
62539006 AAAATTACCAAAATA-CCCTCAACCTAT
1 AAAATTACTGAAATACCCCT-AGTTTGT
*
62539033 AAAATTACTGAAATACCCCT-GACTTGT
1 AAAATTACTGAAATACCCCTAG-TTTGT
* * *
62539060 AAAATTACTAAAATACCCTTAATTTGT
1 AAAATTACTGAAATACCCCTAGTTTGT
* * *
62539087 AAAATTACTAAAATACCCCTAATTTGG
1 AAAATTACTGAAATACCCCTAGTTTGT
* *
62539114 AAAATTACTGAAATACCCTTAATTTAG-
1 AAAATTACTGAAATACCCCTAGTTT-GT
** **
62539141 AAAATTACAAAAATACCCCT-GATTTAC
1 AAAATTACTGAAATACCCCTAG-TTTGT
* * * *
62539168 AAAATTACAGAAATACCCTTGACTTTCT
1 AAAATTACTGAAATACCCCT-AGTTTGT
** * *
62539196 AAAAATTA-TAGAAATACCATTGGTTTGC
1 -AAAATTACT-GAAATACCCCTAGTTTGT
62539224 AAAATTACTGAAATACCC
1 AAAATTACTGAAATACCC
62539242 TCGGTTTGTA
Statistics
Matches: 212, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
26 7 0.03
27 172 0.81
28 16 0.08
29 17 0.08
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTAGTTTGT
Found at i:62539011 original size:54 final size:53
Alignment explanation
Indices: 62538944--62539242 Score: 285
Period size: 54 Copynumber: 5.5 Consensus size: 53
62538934 TGAATACCTT
* * * *
62538944 TGATTTACAAAATTACCGAAATACCCCTAGTTTGTAAAATTACAAAAGTACCCC
1 TGATTTGCAAAATTACTGAAATACCCTTAATTTGTAAAATTACAAAA-TACCCC
* * ** * ** * *
62538998 TGGTTTGTAAAATTACCAAAATACCCTCAACCTATAAAATTACTGAAATACCCC
1 TGATTTGCAAAATTACTGAAATACCCTTAATTTGTAAAATTAC-AAAATACCCC
* * *
62539052 TGACTTGTAAAATTACTAAAATACCCTTAATTTGTAAAATTACTAAAATACCCC
1 TGATTTGCAAAATTACTGAAATACCCTTAATTTGTAAAATTAC-AAAATACCCC
* *
62539106 TAATTTGGAAAATTACTGAAATACCCTTAATTTAG-AAAATTACAAAAATACCCC
1 TGATTTGCAAAATTACTGAAATACCCTTAATTT-GTAAAATTAC-AAAATACCCC
* * * * * **
62539160 TGATTTACAAAATTACAGAAATACCCTTGACTTTCTAAAAATTATAGAAATACCAT
1 TGATTTGCAAAATTACTGAAATACCCTT-AATTTGT-AAAATTACA-AAATACCCC
*
62539216 TGGTTTGCAAAATTACTGAAATACCCT
1 TGATTTGCAAAATTACTGAAATACCCT
62539243 CGGTTTGTAG
Statistics
Matches: 203, Mismatches: 36, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
54 156 0.77
55 9 0.04
56 38 0.19
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (53 bp):
TGATTTGCAAAATTACTGAAATACCCTTAATTTGTAAAATTACAAAATACCCC
Found at i:62539077 original size:81 final size:80
Alignment explanation
Indices: 62538952--62539269 Score: 254
Period size: 81 Copynumber: 3.9 Consensus size: 80
62538942 TTTGATTTAC
* *
62538952 AAAATTACCGAAATACCCCT-AGTTTGTAAAATTAC-AAAAGTACCCCTGGTTTGTAAAATTACC
1 AAAATTACTGAAATACCCCTGA-TTTGTAAAATTACTAAAA-TACCCCTGATTTGTAAAATTACC
62539015 AAAATACCCTCAACCTA
64 AAAATACCCTCAACCTA
* * * *
62539032 TAAAATTACTGAAATACCCCTGACTTGTAAAATTACTAAAATACCCTTAATTTGTAAAATTACTA
1 -AAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCA
** *
62539097 AAATACCC-CTAATTTGG
65 AAATACCCTC-AACCT-A
* * * **
62539114 AAAATTACTGAAATACCCTTAATTTAG-AAAATTACAAAAATACCCCTGATTTACAAAATTA-CA
1 AAAATTACTGAAATACCCCTGATTT-GTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCA
**
62539177 GAAATACCCTTGACTTTCTA
65 -AAATACCCTCAAC---CTA
** * * * * * *
62539197 AAAATTA-TAGAAATACCATTGGTTTGCAAAATTACTGAAATA-CCCTCGGTTTGTAGATTTACC
1 AAAATTACT-GAAATACCCCTGATTTGTAAAATTACTAAAATACCCCT-GATTTGTAAAATTACC
*
62539260 AAAACACCCT
64 AAAATACCCT
62539270 TGTAGGTGAA
Statistics
Matches: 189, Mismatches: 34, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
80 2 0.01
81 122 0.65
82 12 0.06
83 50 0.26
84 3 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACTGAAATACCCCTGATTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATTACCAA
AATACCCTCAACCTA
Found at i:62539247 original size:27 final size:27
Alignment explanation
Indices: 62538928--62539251 Score: 180
Period size: 27 Copynumber: 12.0 Consensus size: 27
62538918 TGTAGGGTAG
* * **
62538928 AATTACTG-AATACCTTTGATTTACAA
1 AATTACTGAAATACCCTCGATTTGTAA
* *
62538954 AATTACCGAAATACCC-CTAGTTTGTAA
1 AATTACTGAAATACCCTCGA-TTTGTAA
* *
62538981 AATTAC-AAAAGTACCC-CTGGTTTGTAA
1 AATTACTGAAA-TACCCTC-GATTTGTAA
** * ** *
62539008 AATTACCAAAATACCCTCAACCTATAA
1 AATTACTGAAATACCCTCGATTTGTAA
*
62539035 AATTACTGAAATACCC-CTGACTTGTAA
1 AATTACTGAAATACCCTC-GATTTGTAA
* **
62539062 AATTACTAAAATACCCTTAATTTGTAA
1 AATTACTGAAATACCCTCGATTTGTAA
* * *
62539089 AATTACTAAAATACCC-CTAATTTGGAA
1 AATTACTGAAATACCCTC-GATTTGTAA
**
62539116 AATTACTGAAATACCCTTAATTTAG-AA
1 AATTACTGAAATACCCTCGATTT-GTAA
** **
62539143 AATTACAAAAATACCC-CTGATTTACAA
1 AATTACTGAAATACCCTC-GATTTGTAA
* * *
62539170 AATTACAGAAATACCCTTGACTTTCTAAA
1 AATTACTGAAATACCCTCGA-TTTGT-AA
* * * *
62539199 AATTA-TAGAAATACCATTGGTTTGCAA
1 AATTACT-GAAATACCCTCGATTTGTAA
*
62539226 AATTACTGAAATACCCTCGGTTTGTA
1 AATTACTGAAATACCCTCGATTTGTA
62539252 GATTTACCAA
Statistics
Matches: 236, Mismatches: 44, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
26 12 0.05
27 193 0.82
28 13 0.06
29 18 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTCGATTTGTAA
Found at i:62539365 original size:27 final size:27
Alignment explanation
Indices: 62539265--62539365 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 27
62539255 TTACCAAAAC
* * **
62539265 ACCCTTGTA-GGTGAAATGACTAAAAT
1 ACCCCTGTATGGTAAAATGACTGTAAT
* * *
62539291 ACCCCT-AATAGGTAAAAAGACCGTAAT
1 ACCCCTGTAT-GGTAAAATGACTGTAAT
* * *
62539318 GCCCCTGTAGGGTAAAGTGACTGTAAT
1 ACCCCTGTATGGTAAAATGACTGTAAT
*
62539345 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTATGGTAAAATGAC
62539366 GATTATGCCC
Statistics
Matches: 55, Mismatches: 17, Indels: 5
0.71 0.22 0.06
Matches are distributed among these distances:
25 1 0.02
26 5 0.09
27 48 0.87
28 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
ACCCCTGTATGGTAAAATGACTGTAAT
Found at i:62539763 original size:33 final size:33
Alignment explanation
Indices: 62539716--62539796 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 33
62539706 ATTACATCGT
* * *
62539716 ACTATATTGTTACTGCATTGGGATTAGGCCCAG
1 ACTATACTGATACTGCATAGGGATTAGGCCCAG
* *
62539749 ACTATACTGATACTGTATAGGGCTTAGGCCCAG
1 ACTATACTGATACTGCATAGGGATTAGGCCCAG
* *
62539782 ACTGTACTGCTACTG
1 ACTATACTGATACTG
62539797 TGTTATTCAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (33 bp):
ACTATACTGATACTGCATAGGGATTAGGCCCAG
Found at i:62564410 original size:34 final size:34
Alignment explanation
Indices: 62564367--62564435 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
62564357 CCATGGATAC
62564367 CGATTATGATTGTCTGATAATAGCCTAATTTTAG
1 CGATTATGATTGTCTGATAATAGCCTAATTTTAG
62564401 CGATTATGATTGTCTGATAATAGCCTAATTTTAG
1 CGATTATGATTGTCTGATAATAGCCTAATTTTAG
62564435 C
1 C
62564436 TGAGTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (34 bp):
CGATTATGATTGTCTGATAATAGCCTAATTTTAG
Found at i:62569655 original size:9 final size:10
Alignment explanation
Indices: 62569623--62569654 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
62569613 AACAAAACAA
62569623 AAAATTTTCG
1 AAAATTTTCG
62569633 AAAATTTT-G
1 AAAATTTTCG
62569642 AAAATTTTCG
1 AAAATTTTCG
62569652 AAA
1 AAA
62569655 TAGGGGTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (10 bp):
AAAATTTTCG
Found at i:62570844 original size:45 final size:43
Alignment explanation
Indices: 62570740--62570954 Score: 153
Period size: 45 Copynumber: 4.8 Consensus size: 43
62570730 TTTGAAGGAA
* * * * * *
62570740 GCCATGGTATCTTCCAACCATGGTCTTTATACATTCCCGAAGTTGT
1 GCCATAGTATCTTTCAACTATGGTCTTT-T-CATTACCGATG-TAT
62570786 GCCATAGTATCTTTCAACTATGGTCTTGTTCATTACCGATGTCAT
1 GCCATAGTATCTTTCAACTATGGTCTT-TTCATTACCGATGT-AT
* * * * * *
62570831 GCCATAGTATCTTTCAACTATGGTTTTATTCGTTTCTGGTATAGT
1 GCCATAGTATCTTTCAACTATGGTCTT-TTCATTACCGATGTA-T
* * * * *
62570876 GCCATAGTATCTTTCAACTATGATATTTCTC-TTTCCAGGTATAAT
1 GCCATAGTATCTTTCAACTATGGTCTTT-TCATTACC-GATGT-AT
* *
62570921 GCCATGGTATCTTTCAACCATGGTCTTTCTCATT
1 GCCATAGTATCTTTCAACTATGGTCTTT-TCATT
62570955 TCTCAAATCA
Statistics
Matches: 142, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
44 7 0.05
45 106 0.75
46 28 0.20
47 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (43 bp):
GCCATAGTATCTTTCAACTATGGTCTTTTCATTACCGATGTAT
Found at i:62570957 original size:90 final size:89
Alignment explanation
Indices: 62570740--62570957 Score: 228
Period size: 90 Copynumber: 2.4 Consensus size: 89
62570730 TTTGAAGGAA
* * *
62570740 GCCATGGTATCTTCCAACCATGGTCTTTATACATTCCCGAAGTTGTGCCATAGTATCTTTCAACT
1 GCCATGGTATCTTTCAACCATGGTCTTTAT-CATTTCTG-AGTTGTGCCATAGTATCTTTCAACT
* * * *
62570805 ATGGTCTTGTTCATTACCGATGTCAT
64 ATGATATTGTTCATTACCGATATAAT
* * *
62570831 GCCATAGTATCTTTCAACTATGGT-TTTATTCGTTTCTG-GTATAGTGCCATAGTATCTTTCAAC
1 GCCATGGTATCTTTCAACCATGGTCTTTA-TCATTTCTGAGT-T-GTGCCATAGTATCTTTCAAC
* *
62570894 TATGATATT-TCTC-TTTCCAGGTATAAT
63 TATGATATTGT-TCATTACC-GATATAAT
*
62570921 GCCATGGTATCTTTCAACCATGGTCTTTCTCATTTCT
1 GCCATGGTATCTTTCAACCATGGTCTTTATCATTTCT
62570958 CAAATCAAAG
Statistics
Matches: 105, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
88 2 0.02
89 6 0.06
90 72 0.69
91 25 0.24
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (89 bp):
GCCATGGTATCTTTCAACCATGGTCTTTATCATTTCTGAGTTGTGCCATAGTATCTTTCAACTAT
GATATTGTTCATTACCGATATAAT
Found at i:62573303 original size:21 final size:21
Alignment explanation
Indices: 62573269--62573308 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62573259 TTCAATTATT
* *
62573269 TAATTAAAATAAATTAAATAA
1 TAATTAAAAGAAATAAAATAA
*
62573290 TAATTCAAAGAAATAAAAT
1 TAATTAAAAGAAATAAAAT
62573309 TAATTTCTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
TAATTAAAAGAAATAAAATAA
Found at i:62601492 original size:40 final size:40
Alignment explanation
Indices: 62601437--62601662 Score: 310
Period size: 40 Copynumber: 5.7 Consensus size: 40
62601427 GATGATAACG
* * * * *
62601437 GGGTTAAGTCCCGAAGGCATTTCTGCTAGTGATTAATTCT
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
62601477 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
62601517 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
62601557 GGGTTAAGTCCCGAACGTATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * **
62601597 GAGCTAAGTTTCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
* *
62601637 GGGCTAAGTCCCGATGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
62601663 TAGTGACCAT
Statistics
Matches: 168, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 2 0.01
40 166 0.99
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:62601675 original size:40 final size:40
Alignment explanation
Indices: 62601441--62601698 Score: 297
Period size: 40 Copynumber: 6.5 Consensus size: 40
62601431 ATAACGGGGT
* * * * * *
62601441 TAAGTCCCGAAGGCATTTCTGCTAGTGATTAATTCTGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
62601481 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
62601521 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* * *
62601561 TAAGTCCCGAACGTATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
**
62601601 TAAGTTTCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
62601641 TAAGTCCCGATGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* *
62601681 TAAGGCCCGATGGC-TTTG
1 TAAGTCCCGAAGGCATTTG
62601699 CGAGTGGTTA
Statistics
Matches: 196, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 6 0.03
40 190 0.97
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:62610041 original size:40 final size:40
Alignment explanation
Indices: 62609754--62610019 Score: 408
Period size: 40 Copynumber: 6.7 Consensus size: 40
62609744 GATGATAACG
* * * *
62609754 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
62609794 GGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
62609834 GGGTTAAGTCCCAAAGGCATTTGCGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
62609874 GTGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
62609914 GGGTTAAGTCCCGAAGGAATTTGTGCGAGTTACTAATTCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
62609954 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
62609994 GGGCTAAGTCCCGAAGGCATTTGTGC
1 GGGTTAAGTCCCGAAGGCATTTGTGC
62610020 TAGTGACCAT
Statistics
Matches: 208, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 206 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:62617392 original size:49 final size:49
Alignment explanation
Indices: 62617336--62617523 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
62617326 TAGACAAGGC
* *
62617336 TATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** ** * * *
62617385 TATCTGGTACATGTAGTAGCCTGCACTTAGTACTATGCACGTGATCAAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* *
62617436 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
62617485 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
62617524 CGTGACCTCA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 73 0.63
50 6 0.05
51 37 0.32
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:62617476 original size:100 final size:100
Alignment explanation
Indices: 62617336--62617528 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
62617326 TAGACAAGGC
* * *
62617336 TATCTGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATTATCTGGTACATGTAG
1 TATCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATTATCCGGTACACGTAG
**
62617401 TAGCCTGCACTTAGTACTATGCACGTGATCAAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCAAAGT
*
62617436 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATTATCCGGTACACGTAG
62617501 TAGCCTGCACTTAGTACTACACACGTGA
66 TAGCCTGCACTTAGTACTACACACGTGA
62617529 CCTCACAATA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (100 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAATACTACACATGCGACCAATTATCCGGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATCAAAGT
Found at i:62621721 original size:42 final size:42
Alignment explanation
Indices: 62621675--62621777 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 42
62621665 TCGCAGGCTG
* * *
62621675 GGTCTTACACGAAATC-AGATACGATGCCTATGTCCCAGACAT
1 GGTCTTACACGAAATCTAAAT-CGAGGCCTATGTCCCAAACAT
*
62621717 GGTCTTACACGTAAATCTTAAATCGAGGCCTGTGTCCCAAACAT
1 GGTCTTACACG-AAATC-TAAATCGAGGCCTATGTCCCAAACAT
* *
62621761 GATCTTACACGATATCT
1 GGTCTTACACGAAATCT
62621778 CATATCAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
42 12 0.23
43 9 0.17
44 28 0.54
45 3 0.06
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGAAATCTAAATCGAGGCCTATGTCCCAAACAT
Found at i:62630407 original size:25 final size:24
Alignment explanation
Indices: 62630360--62630413 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
62630350 TAGTTTTCTC
*
62630360 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
62630384 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
62630409 TTAAT
1 TTAAT
62630414 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:62631757 original size:12 final size:12
Alignment explanation
Indices: 62631740--62631766 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62631730 TGAATTTACT
62631740 TTATTTTTGTTC
1 TTATTTTTGTTC
62631752 TTATTTTTGTTC
1 TTATTTTTGTTC
62631764 TTA
1 TTA
62631767 GACTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.74
Consensus pattern (12 bp):
TTATTTTTGTTC
Found at i:62632720 original size:37 final size:34
Alignment explanation
Indices: 62632670--62632741 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
62632660 AGTGTGCCGT
* *
62632670 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
62632707 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
62632741 T
1 T
62632742 CCATAGCTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:62633524 original size:8 final size:8
Alignment explanation
Indices: 62633511--62633542 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
62633501 TTAGATCGGC
62633511 AAAAGCCG
1 AAAAGCCG
62633519 AAAAGCCG
1 AAAAGCCG
*
62633527 AAATGCCG
1 AAAAGCCG
62633535 AAAAGCCG
1 AAAAGCCG
62633543 GTATTTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:62635644 original size:40 final size:39
Alignment explanation
Indices: 62635607--62635840 Score: 351
Period size: 40 Copynumber: 5.9 Consensus size: 39
62635597 GGATATAGCT
* *
62635607 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* * *
62635647 ACTCGCACCAATGCCTTCCGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
62635687 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
62635727 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
62635767 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
62635807 ACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
62635841 ATCATCCGAA
Statistics
Matches: 179, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 2 0.01
40 175 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:62654203 original size:31 final size:31
Alignment explanation
Indices: 62654165--62654225 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
62654155 CTCCTTCACA
62654165 CTTTCTCTGCAAACGCGTTCAAAGTTGCTTC
1 CTTTCTCTGCAAACGCGTTCAAAGTTGCTTC
*
62654196 CTTTCTCTGCAAATGCGTTCAAAGTTGCTT
1 CTTTCTCTGCAAACGCGTTCAAAGTTGCTT
62654226 TTTTTATCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (31 bp):
CTTTCTCTGCAAACGCGTTCAAAGTTGCTTC
Found at i:62656993 original size:6 final size:6
Alignment explanation
Indices: 62656978--62657055 Score: 79
Period size: 6 Copynumber: 12.8 Consensus size: 6
62656968 AACCAAAATG
* * *
62656978 AGAATC AGAATT AGAATA AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
62657026 AG-GTGAC AGAATC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAATC AGAAT
62657056 ATGAATGCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.05
6 52 0.87
7 4 0.07
8 1 0.02
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:62657038 original size:31 final size:31
Alignment explanation
Indices: 62656978--62657055 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
62656968 AACCAAAATG
*
62656978 AGAATCAGAATTAGAA-TAAGTAACAGAATC
1 AGAATCAGAATCAGAATTAAGTAACAGAATC
* *
62657008 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTAAGTAACAGAATC
62657039 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
62657056 ATGAATGCAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 15 0.34
31 29 0.66
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATTAAGTAACAGAATC
Found at i:62657568 original size:27 final size:26
Alignment explanation
Indices: 62657530--62657605 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 26
62657520 GTCAACAAAC
* *
62657530 ATTGTGACAGAGTCACCAGATACAGAT
1 ATTGTGGCAGAGCCACCAGA-ACAGAT
* *
62657557 ATTGTGGCAGAGCCAACAGAATAGAT
1 ATTGTGGCAGAGCCACCAGAACAGAT
*
62657583 ATTTGTGGCATAGCCACCAGAAC
1 A-TTGTGGCAGAGCCACCAGAAC
62657606 GCTTCCTCCG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (26 bp):
ATTGTGGCAGAGCCACCAGAACAGAT
Found at i:62657836 original size:27 final size:27
Alignment explanation
Indices: 62657805--62658099 Score: 344
Period size: 27 Copynumber: 10.9 Consensus size: 27
62657795 GGGCAAAATG
* * * *
62657805 GTAATTTTACCCCACAAGGGTATCTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
62657831 GATAATTCTACCATATAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
62657859 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62657886 GTAATTCTACCCTACCGGGGCATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
62657913 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62657940 GTAATTCTACCCTACATGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
62657966 GATAATTCTACCCTACCGAGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* **
62657994 GTAATTCTACCCTACAGGCGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62658021 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62658048 GTAATTCTACCCTACAGGGGTATCTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62658074 GATAATTCTACCCTATAGGGGTATTT
1 G-TAATTCTACCCTACAGGGGTATTT
62658100 AATAATTTTG
Statistics
Matches: 231, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.01
27 226 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:62658673 original size:27 final size:27
Alignment explanation
Indices: 62658102--62658662 Score: 728
Period size: 27 Copynumber: 20.8 Consensus size: 27
62658092 GGGTATTTAA
* **
62658102 TAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
62658129 TTATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * * **
62658156 TAATTTTATAAATCAAGGGTAAAACTA
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658183 TAATTTTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
62658210 CAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658237 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
62658264 TAATTCTATAAATTGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
62658291 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
62658318 TAATTTTGTAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
62658345 TAATTCTATAAATTGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
62658372 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* * *
62658399 TAATTCTATAAATCGAGGATAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
62658426 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658453 TAATTTTGTAAATCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658480 TAATTCTATAAATGGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658507 TAATTCTATAAATCAAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658534 TAATTCTATAAACCGAGGGT-AAACGAG
1 TAATTCTGTAAATCGAGGGTAAAACG-G
* **
62658561 TAATTCTGTAAATCAAGGGTAAAACAA
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
62658588 TAATTCTATAAATCGATGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
62658615 TAATTCTGTAAATCGAGGGCAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
62658642 TAATTCTGTAAATCGAGGGTA
1 TAATTCTGTAAATCGAGGGTA
62658663 CTTTGGTAAT
Statistics
Matches: 465, Mismatches: 67, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 5 0.01
27 456 0.98
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:62660686 original size:6 final size:6
Alignment explanation
Indices: 62660675--62660776 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
62660665 AACCAAAATG
*
62660675 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
62660723 AGTAA-C AGAATC AGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
62660772 AGAAT
1 AGAAT
62660777 ATGAATGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.08
6 66 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:62660690 original size:30 final size:29
Alignment explanation
Indices: 62660654--62660776 Score: 131
Period size: 30 Copynumber: 4.1 Consensus size: 29
62660644 AAGAAACATT
* * *
62660654 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
62660684 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
62660714 ATCA-ATATTAGTAACAGAATCAGAATCAAA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
62660744 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
62660775 AT
1 AT
62660777 ATGAATGCAA
Statistics
Matches: 79, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
29 1 0.01
30 54 0.68
31 24 0.30
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:62661283 original size:27 final size:26
Alignment explanation
Indices: 62661244--62661326 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
62661234 TCGATCGGTC
* * *
62661244 AACAGACATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
62661270 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
62661297 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
62661324 AAC
1 AAC
62661327 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:62661936 original size:27 final size:27
Alignment explanation
Indices: 62661520--62661925 Score: 526
Period size: 27 Copynumber: 15.0 Consensus size: 27
62661510 CCCTAGGGGC
* * *
62661520 AAAATGGTAATTTTGTAAATTGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
62661547 AAAACGGTAATTCTATAAATCGAGGCT
1 AAAACGGTAATTCTGTAAATCGAGGGT
*
62661574 AAAACGGTAATTCTGTAAATCAAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
62661601 AAAATGGTAATTCTGTAAATCGAGGAT
1 AAAACGGTAATTCTGTAAATCGAGGGT
*
62661628 AAAACGGTAATTTTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
62661655 AAAACGGTAATTCTTTAAATCAAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
62661682 AAAACGGTAATTCTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* * *
62661709 AAACCAGTAATTCTGTAAATCAAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
** * *
62661736 AAAACAATAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* * *
62661763 AAAACGATAATTCTATAAATCAAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
62661790 AAAACGGTAATTCTATAAACCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
*
62661817 -AAACGAGTAATTCTGTAAATCAAGGGT
1 AAAACG-GTAATTCTGTAAATCGAGGGT
** * *
62661844 AAAACAATAATTCTATAAATCGATGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
* *
62661871 AAAATGGTAATTCTGTAAATCGAGGGC
1 AAAACGGTAATTCTGTAAATCGAGGGT
62661898 AAAACGGTAATTCTGTAAATCGAGGGT
1 AAAACGGTAATTCTGTAAATCGAGGGT
62661925 A
1 A
62661926 CTTTGGTAAT
Statistics
Matches: 332, Mismatches: 45, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 5 0.02
27 323 0.97
28 4 0.01
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAACGGTAATTCTGTAAATCGAGGGT
Found at i:62663870 original size:34 final size:34
Alignment explanation
Indices: 62663826--62663913 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 34
62663816 GAACAGTCTA
* **
62663826 GGCCTAAGCCCATATCAGTCGCAATATCAGTATG
1 GGCCTTAGCCCATATCAGTAACAATATCAGTATG
* *
62663860 GGCCTTAGCCCA-ATACAGTAACAGTATCAGTGTG
1 GGCCTTAGCCCATAT-CAGTAACAATATCAGTATG
*
62663894 GGCCTTAGCCCATTTCAGTA
1 GGCCTTAGCCCATATCAGTA
62663914 CAGTATCCAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
33 2 0.04
34 43 0.93
35 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (34 bp):
GGCCTTAGCCCATATCAGTAACAATATCAGTATG
Found at i:62665554 original size:40 final size:40
Alignment explanation
Indices: 62665495--62665638 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
62665485 ATAACCACAA
* * *
62665495 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
62665535 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
62665575 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
62665615 GCATAAATGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGC
62665639 TTGGATATCA
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
40 89 0.96
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:62670935 original size:13 final size:13
Alignment explanation
Indices: 62670913--62670945 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62670903 AAGGGTTTGT
62670913 TTAT-TAAACTAA
1 TTATCTAAACTAA
62670925 TTATCTAAACTAA
1 TTATCTAAACTAA
*
62670938 TTAACTAA
1 TTATCTAA
62670946 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:62676197 original size:13 final size:13
Alignment explanation
Indices: 62676160--62676197 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
62676150 GTTTGTTTAT
*
62676160 TAAATTAATTATC
1 TAAATTAATTAAC
*
62676173 TAAACTAATTAAC
1 TAAATTAATTAAC
62676186 TAAATTAATTAA
1 TAAATTAATTAA
62676198 AGTGAAGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAATTAATTAAC
Found at i:62680449 original size:40 final size:40
Alignment explanation
Indices: 62680390--62680615 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
62680380 CGGATATAAC
* * *
62680390 CACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * *
62680429 CACTAGCATAAATGCCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
62680468 CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
62680509 AACTCGCACCAATGCCTTCGGGACTTAGCCTGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * * *
62680549 AACTCGCAAAAATGCCTTCGGGACTTAGCCCAGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
62680589 CACTAGCACAAATGTCTTCGGGACTTA
1 CACTCGCACAAATGCCTTCGGGACTTA
62680616 ACCCCGTTAG
Statistics
Matches: 164, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 8 0.05
40 154 0.94
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:62680501 original size:80 final size:80
Alignment explanation
Indices: 62680366--62680615 Score: 301
Period size: 80 Copynumber: 3.1 Consensus size: 80
62680356 ATCCAAGTAT
* * * * * *
62680366 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGG-ATATGG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
62680428 TCACTAGCATAAATGC
65 TCACTAGCACAAATGC
*
62680444 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * *
62680509 AACTCGCACCAATGC
66 CACTAGCACAAATGC
* * * * *
62680524 CTTCGGGACTTAGCCTGGA-ATTAGTAACTCGCAAAAATGCCTTCGGGACTTAGCCCAGAATTAA
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
*
62680588 TCACTAGCACAAATGT
65 TCACTAGCACAAATGC
62680604 CTTCGGGACTTA
1 CTTCGGGACTTA
62680616 ACCCCGTTAG
Statistics
Matches: 147, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
78 11 0.07
79 19 0.13
80 115 0.78
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
CACTAGCACAAATGC
Found at i:62688273 original size:46 final size:47
Alignment explanation
Indices: 62688206--62688346 Score: 160
Period size: 46 Copynumber: 3.0 Consensus size: 47
62688196 GACAGGACAG
* *
62688206 GACAGAAATGAGCCATGTAAGTCCATATCAG-ATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
*
62688252 GACAGGAATGAGCCATGTAAGTCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAG--A-ATATATGGCATTGGA
* ** * * *
62688302 GACAGGAATAATTCATGTAAGTCCATGTC-GAAGACATGGCATTGG
1 GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGG
62688347 CAGGTTATTG
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
46 41 0.51
47 1 0.01
49 1 0.01
50 38 0.47
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGAATATATGGCATTGGA
Found at i:62691652 original size:20 final size:20
Alignment explanation
Indices: 62691627--62691671 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
62691617 ATGGACTAAA
* *
62691627 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
62691647 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
62691667 ATGAA
1 ATGAA
62691672 TACATGTGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:62697702 original size:48 final size:48
Alignment explanation
Indices: 62697627--62697948 Score: 314
Period size: 48 Copynumber: 6.7 Consensus size: 48
62697617 TAACATGTGT
*
62697627 GCCAGTGTAAAACCATGTCTGGGACATGGCATCAGCCACT-ATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACTGATATGAGA
* * * * *
62697675 GCCAGTGTAAGACCATGTCTGGTACATGGCATCGGCATTGATATGTGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGATATGAGA
** * *
62697723 GGTAGTGTAAGACCATGTCTGAGACATGGCATAGACCAC--ACTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG-CCACTGA-TATGAGA
* * * *
62697771 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACT-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGATA-TGAGA
* * * * *
62697819 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCGACATTGAGACT-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGATA-TGAGA
* * * * *
62697867 GCTAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTC-GACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACTGATATGAGA
* *
62697915 GCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
62697949 ACAATTCACC
Statistics
Matches: 231, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
47 9 0.04
48 216 0.94
49 6 0.03
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCACTGATATGAGA
Found at i:62697893 original size:144 final size:142
Alignment explanation
Indices: 62697627--62697951 Score: 390
Period size: 144 Copynumber: 2.3 Consensus size: 142
62697617 TAACATGTGT
* * * *
62697627 GCCAGTGTAAAACCATGTCTGGGACATGGCATCAGCCACTATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACACTAGATGAGAGCCAGTGTAAGACCATG
* * * *
62697692 TCTGGTACATGGCATCGGCATTGATATGTGCGGTAGTGTAAGACCATGTCTGAGACATGGCAT-A
65 TCTGGGACATGGCATCGACATTGAGATGAGC-GTAGTGTAAGACCATGTCTGAGACATGGCATCA
62697756 GACCAC-ACTATGAGA
129 G-CCACGAC-ATGAGA
* * *
62697771 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACT-AGAGCTAGTGTAAGACCGT
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGACACT-AGA-TGAGAGCCAGTGTAAGACCAT
* *
62697835 GTCTGGGACATGGCATCGACATTGAGACTAGAGC-TAGTGTAAGACCATGTTTGGGACATGGCAT
64 GTCTGGGACATGGCATCGACATTGAGA-T-GAGCGTAGTGTAAGACCATGTCTGAGACATGGCAT
* *
62697899 CAGCCTCGACATGTGA
127 CAGCCACGACATGAGA
*
62697915 GCCAGTGTAAGACCATGT-TTGGAACATGGCATCGACA
1 GCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGACA
62697952 ATTCACCCTT
Statistics
Matches: 158, Mismatches: 16, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
143 7 0.04
144 142 0.90
145 6 0.04
146 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (142 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCGACACTAGATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACATTGAGATGAGCGTAGTGTAAGACCATGTCTGAGACATGGCATCAGC
CACGACATGAGA
Found at i:62702725 original size:31 final size:31
Alignment explanation
Indices: 62702690--62702748 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
62702680 GTCACACGCC
62702690 CGTGTGGGTAGGCCATGTGGTCACACACACT
1 CGTGTGGGTAGGCCATGTGGTCACACACACT
*
62702721 CGTGTGGGTAGGCCGTGTGGTCACACAC
1 CGTGTGGGTAGGCCATGTGGTCACACAC
62702749 GCCCGTATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.17, C:0.25, G:0.36, T:0.22
Consensus pattern (31 bp):
CGTGTGGGTAGGCCATGTGGTCACACACACT
Found at i:62710539 original size:20 final size:20
Alignment explanation
Indices: 62710501--62710539 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
62710491 ACAGCCATAG
*
62710501 ATAATATTCTTTCATTCAAC
1 ATAATATTCTTTCAATCAAC
62710521 ATAAT-TTCTTATCAATCAA
1 ATAATATTCTT-TCAATCAA
62710540 GCAAAACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
ATAATATTCTTTCAATCAAC
Found at i:62722360 original size:20 final size:20
Alignment explanation
Indices: 62722332--62722383 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
62722322 CGGGTATGGG
*
62722332 ACACGGGCGTGTCCCAAAGC
1 ACACAGGCGTGTCCCAAAGC
62722352 ACACAGGCGTGTCCCAAAGC
1 ACACAGGCGTGTCCCAAAGC
62722372 ACACAGGCGTGT
1 ACACAGGCGTGT
62722384 GCATTACCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.33, G:0.29, T:0.12
Consensus pattern (20 bp):
ACACAGGCGTGTCCCAAAGC
Found at i:62728795 original size:43 final size:43
Alignment explanation
Indices: 62728742--62728824 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
62728732 TGAGATAGTG
* *
62728742 GCATCCGAGCTCATTGAGAGGTCCGAGTTCATTATGGATGTGA
1 GCATCCGAGCTCATTGAAAGGTCCGAGTTCATAATGGATGTGA
* ** *
62728785 GCATCTGAGCTTGTTGAAAGGTCTGAGTTCATAATGGATG
1 GCATCCGAGCTCATTGAAAGGTCCGAGTTCATAATGGATG
62728825 CGATTCATGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAAAGGTCCGAGTTCATAATGGATGTGA
Found at i:62730380 original size:48 final size:48
Alignment explanation
Indices: 62730323--62730424 Score: 152
Period size: 48 Copynumber: 2.1 Consensus size: 48
62730313 CACATGGTAG
* *
62730323 GATGCCAATGCCATAT-CTCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCT-AGATATGGTCTTAAATGGGATCACATATC
* *
62730371 GATGCCAATGCCATGTCCTAGATATGGTCTTAAATGGGATCACATATT
1 GATGCCAATGCCATATCCTAGATATGGTCTTAAATGGGATCACATATC
62730419 GATGCC
1 GATGCC
62730425 GATAGTCCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
48 47 0.96
49 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATATCCTAGATATGGTCTTAAATGGGATCACATATC
Found at i:62730441 original size:43 final size:46
Alignment explanation
Indices: 62730343--62730445 Score: 131
Period size: 48 Copynumber: 2.3 Consensus size: 46
62730333 CCATATCTCG
*
62730343 GATATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTA
1 GATATGGTCTTAAATGGGATCACATATCGATGCCAAT--CATGTCCTA
* *
62730391 GATATGGTCTTAAATGGGATCACATATTGATGCCGAT-A-GTCC-A
1 GATATGGTCTTAAATGGGATCACATATCGATGCCAATCATGTCCTA
*
62730434 GCTATGGTCTTA
1 GATATGGTCTTA
62730446 CACGAAATTA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
43 12 0.24
44 4 0.08
45 1 0.02
48 34 0.67
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (46 bp):
GATATGGTCTTAAATGGGATCACATATCGATGCCAATCATGTCCTA
Found at i:62732561 original size:28 final size:28
Alignment explanation
Indices: 62732521--62732582 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
62732511 GTTACCAATC
62732521 TAGTATTAAAATGGCATTGTATGAAGCA
1 TAGTATTAAAATGGCATTGTATGAAGCA
*
62732549 TAGTATTAAAATGGCATTGTATGAAGCC
1 TAGTATTAAAATGGCATTGTATGAAGCA
62732577 TAGTAT
1 TAGTAT
62732583 GGATGCAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (28 bp):
TAGTATTAAAATGGCATTGTATGAAGCA
Found at i:62732570 original size:16 final size:16
Alignment explanation
Indices: 62732523--62732570 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
62732513 TACCAATCTA
62732523 GTATTAAAATGGCATT
1 GTATTAAAATGGCATT
* *
62732539 GTA-T-GAA--GCATA
1 GTATTAAAATGGCATT
62732551 GTATTAAAATGGCATT
1 GTATTAAAATGGCATT
62732567 GTAT
1 GTAT
62732571 GAAGCCTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
12 7 0.29
13 1 0.04
14 4 0.17
15 1 0.04
16 11 0.46
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (16 bp):
GTATTAAAATGGCATT
Found at i:62733929 original size:21 final size:20
Alignment explanation
Indices: 62733903--62733948 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
62733893 AGGGATTAAA
*
62733903 ATGAAAAGTTGTAAAAATTTG
1 ATGAAAAGTTCT-AAAATTTG
* *
62733924 ATGAAAATTTCTAAAATTTT
1 ATGAAAAGTTCTAAAATTTG
62733944 ATGAA
1 ATGAA
62733949 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTG
Found at i:62735825 original size:21 final size:21
Alignment explanation
Indices: 62735799--62735852 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
62735789 ACGGCCTCCA
62735799 ACACGGGCGTGTCCCAAGGTC
1 ACACGGGCGTGTCCCAAGGTC
*
62735820 ACACGGGCGTGTCCCAAGGTT
1 ACACGGGCGTGTCCCAAGGTC
62735841 ACACGGGCGTGT
1 ACACGGGCGTGT
62735853 AACATCCTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.30, G:0.35, T:0.17
Consensus pattern (21 bp):
ACACGGGCGTGTCCCAAGGTC
Found at i:62737306 original size:49 final size:50
Alignment explanation
Indices: 62737069--62737311 Score: 246
Period size: 49 Copynumber: 4.9 Consensus size: 50
62737059 ATCTATTGTG
* * *
62737069 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
62737119 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTA-CCAGATAA-TT
* * * * * * **
62737169 CGATCACGTGTGTAGTTCTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
** * *
62737219 AGGTCATGTGTGTAGTACT-A--GCAGGCTACTACGAGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
** *
62737266 -GGTCGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
62737312 GCTTTGGCTA
Statistics
Matches: 158, Mismatches: 28, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
46 16 0.10
47 23 0.15
49 61 0.39
50 23 0.15
51 35 0.22
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:62741235 original size:16 final size:15
Alignment explanation
Indices: 62741214--62741265 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
62741204 AGGGTGGAAA
62741214 GAAAATTGGAAGGATG
1 GAAAATT-GAAGGATG
*
62741230 GAAAATTGAAGGGGTG
1 GAAAATTGAA-GGATG
*
62741246 GAAAACTAGAAGGAT-
1 GAAAA-TTGAAGGATG
62741261 GAAAA
1 GAAAA
62741266 ACATAATTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 8 0.26
16 19 0.61
17 4 0.13
ACGTcount: A:0.48, C:0.02, G:0.35, T:0.15
Consensus pattern (15 bp):
GAAAATTGAAGGATG
Found at i:62745121 original size:15 final size:17
Alignment explanation
Indices: 62745100--62745140 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
62745090 CCATTTTAAT
62745100 TATTTTATATAAA-ATA
1 TATTTTATATAAATATA
62745116 -ATTTTAT-TAAATATA
1 TATTTTATATAAATATA
*
62745131 TAGTTTATAT
1 TATTTTATAT
62745141 TTTTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 4 0.19
15 10 0.48
16 6 0.29
17 1 0.05
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
TATTTTATATAAATATA
Found at i:62745238 original size:94 final size:93
Alignment explanation
Indices: 62745054--62745243 Score: 231
Period size: 94 Copynumber: 2.0 Consensus size: 93
62745044 ATATTTAAGT
* * * * * * *
62745054 TAATTCATATAATATCACAGAATTTTAATTTCACTTCCATTTTAATTATTTTATATAAAATAATT
1 TAATTCATATAATATCACAGAATCTAAAATTCACATCCACTTCAATTATTTTACATAAAATAATT
*
62745119 TTATTAAATATATAGTTTATATTTTTAA
66 TTATTAAATATATAATTTATATTTTTAA
* *
62745147 TAATTCATATAATATCATAGAATACTAAAATTCACATCCACTTCAATTA-TTT-CATAAATTAAT
1 TAATTCATATAATATCACAGAAT-CTAAAATTCACATCCACTTCAATTATTTTACATAAAATAAT
* *
62745210 TTTATTAAATATATATTATTTATGTTTTTTA
65 TTTATTAAATATATA--ATTTATATTTTTAA
62745241 TAA
1 TAA
62745244 GTTAAATTTG
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
92 24 0.29
93 25 0.30
94 33 0.40
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (93 bp):
TAATTCATATAATATCACAGAATCTAAAATTCACATCCACTTCAATTATTTTACATAAAATAATT
TTATTAAATATATAATTTATATTTTTAA
Found at i:62750119 original size:22 final size:22
Alignment explanation
Indices: 62750091--62750135 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
62750081 TAACAAACTG
62750091 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
62750113 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
62750135 T
1 T
62750136 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:62753893 original size:22 final size:22
Alignment explanation
Indices: 62753865--62753909 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
62753855 AGGGGGAGTG
62753865 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
62753887 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
62753909 T
1 T
62753910 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:62757435 original size:18 final size:19
Alignment explanation
Indices: 62757412--62757449 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
62757402 CAATTTTAAA
*
62757412 TTTGAATCCCA-ATTCATT
1 TTTGAAGCCCAGATTCATT
*
62757430 TTTGAAGCTCAGATTCATT
1 TTTGAAGCCCAGATTCATT
62757449 T
1 T
62757450 CAGGTCTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGAAGCCCAGATTCATT
Found at i:62762011 original size:16 final size:16
Alignment explanation
Indices: 62761990--62762031 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
62761980 TTATTAAATT
*
62761990 ATATATTTTAATTATA
1 ATATATTTTAATAATA
62762006 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
62762021 AT-TATGTTTAA
1 ATATAT-TTTAA
62762032 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:62762016 original size:15 final size:15
Alignment explanation
Indices: 62761981--62762022 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
62761971 TTAAGAATTT
*
62761981 TATTAAATTAT-ATA
1 TATTTAATTATAATA
62761995 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
62762009 TATTTAATAATAAT
1 TATTTAATTATAAT
62762023 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:62762222 original size:44 final size:45
Alignment explanation
Indices: 62762173--62762267 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
62762163 TTACACCTCT
* *
62762173 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
62762217 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
62762262 ATTACA
1 ATTACA
62762268 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:62762267 original size:16 final size:16
Alignment explanation
Indices: 62762248--62762315 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
62762238 GATTTGCTAT
* *
62762248 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
62762264 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
62762280 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
62762296 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
62762312 TACA
1 TACA
62762316 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:62763755 original size:74 final size:74
Alignment explanation
Indices: 62763668--62763812 Score: 254
Period size: 74 Copynumber: 2.0 Consensus size: 74
62763658 AATTAAAACT
*
62763668 AAATCATCATATGTATCATGTTAGTCTAAAAAAAGTAGATAATGATAAGATTACTAATAAAAATA
1 AAATCATCATATGTATCATGTTAGTCTAAAAAAAGTAGATAATAATAAGATTACTAATAAAAATA
62763733 GTAAGAATC
66 GTAAGAATC
* * *
62763742 AAATCATCGTATGTATCATGTTAGTCTAAAAAAAGTAGATGATAATATGATTACTAATAAAAATA
1 AAATCATCATATGTATCATGTTAGTCTAAAAAAAGTAGATAATAATAAGATTACTAATAAAAATA
62763807 GTAAGA
66 GTAAGA
62763813 CAAATAAACA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30
Consensus pattern (74 bp):
AAATCATCATATGTATCATGTTAGTCTAAAAAAAGTAGATAATAATAAGATTACTAATAAAAATA
GTAAGAATC
Found at i:62764411 original size:14 final size:14
Alignment explanation
Indices: 62764392--62764442 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
62764382 ATATCTCTTT
62764392 TTTATAATATAATA
1 TTTATAATATAATA
*
62764406 TTTATAATATTTAACA
1 TTTATAATA--TAATA
*
62764422 TTTATAA-AAAATA
1 TTTATAATATAATA
62764435 TTTTATAA
1 -TTTATAA
62764443 ATTGTCCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 3 0.10
14 16 0.52
15 1 0.03
16 11 0.35
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TTTATAATATAATA
Found at i:62774941 original size:66 final size:70
Alignment explanation
Indices: 62774856--62774985 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 70
62774846 ACATGGTGAA
* * *
62774856 CACTTAGTACCACTCATGCGACCTAG-T-CGA-TT-TGTCT-CGTAGCTCTCTTGTCTACATGGT
1 CACTTAGAACCACACATGCGACCTAGCTAC-ATTTATCTCTCCGTAGCTCTCTTGTCTACATGGT
62774916 GTCCTT
65 GTCCTT
*
62774922 CACTTAGAATCACACATGCGACCTAGCTACATTTATCTCTCCCGTAGCTCTCTTGTCTACATGG
1 CACTTAGAACCACACATGCGACCTAGCTACATTTATCTCT-CCGTAGCTCTCTTGTCTACATGG
62774986 GATACATCCC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
66 23 0.43
67 2 0.04
68 3 0.06
69 4 0.07
71 22 0.41
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (70 bp):
CACTTAGAACCACACATGCGACCTAGCTACATTTATCTCTCCGTAGCTCTCTTGTCTACATGGTG
TCCTT
Found at i:62775038 original size:68 final size:68
Alignment explanation
Indices: 62774890--62775045 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
62774880 AGTCGATTTG
* * **
62774890 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTAGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TAGAATCACACATGCGACCTAGCTACACA
*
62774955 TATC
65 TATA
* * *
62774959 TCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTAGAATCACACATGCGACCTAGCTAC-
62775021 ACATAGTA
62 ACATA-TA
*
62775029 TCTCGTAGCTTTCTTGT
1 TCTCGTAGCTCTCTTGT
62775046 ACACATGATG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
68 35 0.48
69 6 0.08
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTAGAATCACACATGCGACCTAGCTACACAT
ATA
Found at i:62775184 original size:17 final size:17
Alignment explanation
Indices: 62775162--62775196 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
62775152 TCTTCCATTC
62775162 TTCCAATAGTCGATTTA
1 TTCCAATAGTCGATTTA
62775179 TTCCAATAGTCGATTTA
1 TTCCAATAGTCGATTTA
62775196 T
1 T
62775197 ACTTCAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TTCCAATAGTCGATTTA
Found at i:62782584 original size:43 final size:43
Alignment explanation
Indices: 62782520--62782624 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
62782510 TTCAATAAAC
*
62782520 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
* * *
62782563 TCTCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
62782606 TCGCACACTTAGTGCCAAT
1 TCGCACACTTAGTGCCAAT
62782625 AGATTAAACC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
Found at i:62797468 original size:15 final size:15
Alignment explanation
Indices: 62797448--62797478 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
62797438 ACTCTGAGGT
*
62797448 ACTGGATCTTTTCTA
1 ACTGGATCATTTCTA
62797463 ACTGGATCATTTCTA
1 ACTGGATCATTTCTA
62797478 A
1 A
62797479 TTCTTTCCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (15 bp):
ACTGGATCATTTCTA
Found at i:62808421 original size:16 final size:16
Alignment explanation
Indices: 62808400--62808439 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
62808390 TATTAGGGGT
*
62808400 AAAAGTGTAAATTTTC
1 AAAAGTGTAAATTTAC
*
62808416 AAAAGTATAAATTTAC
1 AAAAGTGTAAATTTAC
62808432 AAAAGTGT
1 AAAAGTGT
62808440 GTATTTTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.33
Consensus pattern (16 bp):
AAAAGTGTAAATTTAC
Found at i:62813035 original size:85 final size:86
Alignment explanation
Indices: 62812878--62813081 Score: 236
Period size: 85 Copynumber: 2.4 Consensus size: 86
62812868 GGTTACCAAG
* * *
62812878 ATGTGATTACATGTAAGATCATGTCTGGGACATTGGCATTGTATTGTGATTACGTATAAGACAAT
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATAGTATTGTGATTACGTATAAGACAAT
*
62812943 GTCTGGGACATTGGCA-C-ATT
66 GTCTGGGACAATGGCATCGA-T
* * * *
62812963 AT-TCGATTACGTGTAAGACCATGTCTGGGATATTGGCATAGTTATT-TGATTTCGTGTAAGACT
1 ATGT-GATTACATGTAAGACCATGTCTGGGATATTGGCATAG-TATTGTGATTACGTATAAGACA
* * *
62813026 CTGTTTGGGATAATGGCATCGAT
64 ATGTCTGGGACAATGGCATCGAT
* *
62813049 ATGTGATAACATGTAAGACCATATCTGGGATAT
1 ATGTGATTACATGTAAGACCATGTCTGGGATAT
62813082 GTCATTGTAC
Statistics
Matches: 100, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
84 1 0.01
85 63 0.63
86 34 0.34
87 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (86 bp):
ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATAGTATTGTGATTACGTATAAGACAAT
GTCTGGGACAATGGCATCGAT
Found at i:62813079 original size:43 final size:43
Alignment explanation
Indices: 62812878--62813081 Score: 193
Period size: 43 Copynumber: 4.8 Consensus size: 43
62812868 GGTTACCAAG
* * * *
62812878 ATGTGATTACATGTAAGATCATGTCTGGGACATTGGCATTG-T
1 ATGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
* * *
62812920 ATTGTGATTACGTATAAGACAATGTCTGGGACATTGGCA-C-ATT
1 A-TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGA-T
* *
62812963 AT-TCGATTACGTGTAAGACCATGTCTGGGATATTGGCATAGTT
1 ATGT-GATTACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
* * * *
62813006 ATTTGATTTCGTGTAAGACTC-TGTTTGGGATAATGGCATCGAT
1 ATGTGATTACGTGTAAGAC-CATGTCTGGGATATTGGCATCGAT
* * *
62813049 ATGTGATAACATGTAAGACCATATCTGGGATAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGATAT
62813082 GTCATTGTAC
Statistics
Matches: 131, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 34 0.26
43 94 0.72
44 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGAT
Found at i:62821697 original size:29 final size:29
Alignment explanation
Indices: 62821646--62821705 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
62821636 CAGAGAAGTT
* *
62821646 AGATTTTTGGGGCACCTTATTTTAGCGGA
1 AGATTTTTGGGGAACATTATTTTAGCGGA
*
62821675 AGATTTTTGGGGAACATTGTTTTAGCGGA
1 AGATTTTTGGGGAACATTATTTTAGCGGA
62821704 AG
1 AG
62821706 GTATACATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.37
Consensus pattern (29 bp):
AGATTTTTGGGGAACATTATTTTAGCGGA
Found at i:62825124 original size:27 final size:27
Alignment explanation
Indices: 62825105--62825233 Score: 177
Period size: 27 Copynumber: 4.8 Consensus size: 27
62825095 ATTACCAAAG
* *
62825105 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
62825132 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
62825159 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
62825186 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
62825213 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAGAATTA
62825234 GTAAAATACC
Statistics
Matches: 92, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:62825233 original size:54 final size:54
Alignment explanation
Indices: 62825105--62825225 Score: 206
Period size: 54 Copynumber: 2.2 Consensus size: 54
62825095 ATTACCAAAG
* *
62825105 TACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
* *
62825159 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
62825213 TACCCTCGATTTA
1 TACCCTCGATTTA
62825226 CAAAATTAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
Found at i:62825243 original size:27 final size:27
Alignment explanation
Indices: 62825159--62825489 Score: 106
Period size: 27 Copynumber: 12.2 Consensus size: 27
62825149 ATTACCGTTT
* * ***
62825159 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
62825186 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
*
62825213 TACCCTCGATTTACAAAATTAGTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
62825240 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* * * *
62825267 TACCCTC-AATCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAA
* * ** *
62825294 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * ** *
62825320 TATCACT-GGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTTACAAAATTACTAAAA
* *** **
62825347 TACCACTAG-TTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACTAAAA
* ** *
62825374 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
62825401 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
* *
62825428 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAC--AAAATTACT-AAAA
* * *
62825457 TACCAT-TAGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
62825484 TACCCT
1 TACCCT
62825490 TGGTTTGTAG
Statistics
Matches: 242, Mismatches: 43, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
26 23 0.10
27 195 0.81
28 9 0.04
29 15 0.06
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Done.