Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 189 of 362
Found at i:62825271 original size:54 final size:53
Alignment explanation
Indices: 62825092--62825516 Score: 201
Period size: 54 Copynumber: 7.9 Consensus size: 53
62825082 CTCAAATTGT
* * **** *
62825092 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTAG-TTTAC
* **** * * *** *
62825146 AGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTAG-TTTAC
* * *** * **
62825200 AGAATTACTATTTTACCCTCGATTTACAAAATTAGTAAAATACCCTTAGTTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCC-TAGTTTAC
* * * **
62825254 AAAATTACCAAAATACCCTC-AATCAGTAAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAATACCCTAGTTTAC
* * * * * **
62825307 AAAATTGCTAAAATATCACT-GGTTTGTAAAATTACCAAAATACCACTAGTTTGT
1 AAAATTACCAAAATA-CCCTCGATTTATAAAATTACCAAAATACC-CTAGTTTAC
* * * *
62825361 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTAC
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATA-CCCTAG-TTTAC
* * * *** *
62825415 AAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTAGTTTAC
1 AAAATTACCA-AAATACCCTCGA-TTTAT-AAAATTACCAAAATACC-CTAGTTTAC
** * * * * * *
62825471 AAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCT
62825517 TGTAGGATGA
Statistics
Matches: 289, Mismatches: 68, Indels: 29
0.75 0.18 0.08
Matches are distributed among these distances:
53 45 0.16
54 194 0.67
55 14 0.05
56 35 0.12
57 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCTAGTTTAC
Found at i:62825640 original size:27 final size:27
Alignment explanation
Indices: 62825549--62825640 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
62825539 ACCCCTATTA
* *
62825549 GGTAAAAAGACTGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
62825576 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
62825603 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
62825630 GGTAAAATGAC
1 GGTAAAATGAC
62825641 GAATATGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:62826704 original size:31 final size:31
Alignment explanation
Indices: 62826650--62826713 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
62826640 CGTTTACAGT
* * *
62826650 AAAGGCTTCGGCCTAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
**
62826681 AAAGGCTTCGGCCCAATGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
62826712 AA
1 AA
62826714 TATGAAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:62826712 original size:7 final size:7
Alignment explanation
Indices: 62826700--62826727 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
62826690 GGCCCAATGT
62826700 TATGAAA
1 TATGAAA
62826707 TATGAAA
1 TATGAAA
62826714 TATGAAA
1 TATGAAA
62826721 TATGAAA
1 TATGAAA
62826728 AGGGCTATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:62835288 original size:46 final size:46
Alignment explanation
Indices: 62835156--62835415 Score: 169
Period size: 46 Copynumber: 5.6 Consensus size: 46
62835146 TTATTGTGGA
* * * *
62835156 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GACGAGTG
* * * * *
62835202 CCATTGTAAGACTATTTCTGGGACATTGCATCGACATCGAGACGAGTG
1 CTAGTGTAAGAC-ATGTCTGGGACA-TGCATCGGCCTCGAGACGAGTG
62835250 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGT-
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGTG
* * *
62835297 C-AGTGTAAGACATATCTGGGACATGCATCAG-CTACGAGATGA-TAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGT-G
* * * * * * *
62835342 -TCGGGGTAAGACCATGTCTAGGACATGGCATCGACAT-GAGA-TATGAG
1 CT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA-GTG
62835389 CTAGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
62835416 GCATTGGTTC
Statistics
Matches: 168, Mismatches: 29, Indels: 34
0.73 0.13 0.15
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 2 0.01
46 69 0.41
47 62 0.37
48 31 0.18
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGTG
Found at i:62835410 original size:140 final size:140
Alignment explanation
Indices: 62835158--62835415 Score: 333
Period size: 140 Copynumber: 1.8 Consensus size: 140
62835148 ATTGTGGACT
* * * ** * * *
62835158 AGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCATTGTAAGACTATTTCTGG
1 AGTGTAAGACATATCTGGGACATGCATCAGCCAGATGATGAGAGCCAGGGTAAGACCATGTCTAG
* *
62835223 GACATTGCATCGACATCGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
66 GACATGGCATCGACATCGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
62835288 GACGTAAGTC
131 GACGTAAGTC
* * * *
62835298 AGTGTAAGACATATCTGGGACATGCATCAGCTACGA-GATGATAGTCGGGGTAAGACCATGTCTA
1 AGTGTAAGACATATCTGGGACATGCATCAGCCA-GATGATGAGAGCCAGGGTAAGACCATGTCTA
*
62835362 GGACATGGCATCGACAT-GAGA-TATGAGCTAGTGTAAGACCATGTCTGGGACATG
65 GGACATGGCATCGACATCGAGACGA-GAGCTAGTGTAAGA-CATGTCTGGGACATG
62835416 GCATTGGTTC
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 1 0.01
139 17 0.17
140 81 0.81
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATATCTGGGACATGCATCAGCCAGATGATGAGAGCCAGGGTAAGACCATGTCTAG
GACATGGCATCGACATCGAGACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
GACGTAAGTC
Found at i:62837659 original size:48 final size:48
Alignment explanation
Indices: 62837563--62837698 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
62837553 CACCATGATT
* ****
62837563 TATGAGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCGGTGTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGA
62837611 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGA
* * * * * *
62837659 TACGTA-TGCCAGTCTAAGACCATATCTGGGATATGGCATC
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
62837699 GGCCTCGGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
48 75 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGA
Found at i:62850739 original size:40 final size:41
Alignment explanation
Indices: 62850684--62850780 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
62850674 GGATTATGCT
* *
62850684 TGGCACTAAGTGTGCG-GTTTAATATAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGAGTTGAA-ATAGCTTCGGATACATAA
* * *
62850724 TGGCATTAAGTGTGCGAGTTGGAATAGCTTCGGATATATAA
1 TGGCACTAAGTGTGCGAGTTGAAATAGCTTCGGATACATAA
62850765 -GGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
62850781 TACCAACTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
40 43 0.88
41 6 0.12
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGAGTTGAAATAGCTTCGGATACATAA
Found at i:62859737 original size:42 final size:42
Alignment explanation
Indices: 62859691--62859815 Score: 151
Period size: 44 Copynumber: 2.9 Consensus size: 42
62859681 CTAAGACTAT
* * *
62859691 GTGTAAGACCATATTTGGGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATTTGGGATATGGCATCCATAAGAGACTTA
* *
62859733 GTGTAAGACAATATATCTGGGATATGGCATCGATAAGAGACTTA
1 GTGTAAGACCATAT-T-TGGGATATGGCATCCATAAGAGACTTA
* * *
62859777 GTGTAAGACCATAGTTGGGCTATTGGCATCCATACGAGA
1 GTGTAAGACCATATTTGGGATA-TGGCATCCATAAGAGA
62859816 TCCCATGTAA
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
42 19 0.27
43 16 0.23
44 36 0.51
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATTTGGGATATGGCATCCATAAGAGACTTA
Found at i:62868671 original size:43 final size:42
Alignment explanation
Indices: 62868624--62868729 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 42
62868614 TGCCAACTTT
62868624 CCAGACGTGGTCTTACATGCAA-TCAAACATCGATGCC-ACTGTC
1 CCAGACGTGGTCTTACATG-AAGTCAAACA-CGATGCCGA-TGTC
* * *
62868667 CCAGACAG-GGTGTTACACGAAGTCAAATACGATGCCGATGTC
1 CCAGAC-GTGGTCTTACATGAAGTCAAACACGATGCCGATGTC
*
62868709 CCAGACATGGTCTTACATGAA
1 CCAGACGTGGTCTTACATGAA
62868730 AAATGGAAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
42 30 0.57
43 22 0.42
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (42 bp):
CCAGACGTGGTCTTACATGAAGTCAAACACGATGCCGATGTC
Found at i:62870936 original size:27 final size:27
Alignment explanation
Indices: 62870906--62871107 Score: 244
Period size: 27 Copynumber: 7.4 Consensus size: 27
62870896 TGAGTCCGCT
* * * *
62870906 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
62870933 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62870960 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
62870988 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
62871015 CACTGTAGTGC-ATCATATTCATTTCGCA
1 CACT-TAGTGCTA-CATAGTCAAATCGCA
*
62871043 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62871070 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62871097 CACTTAGTGCT
1 CACTTAGTGCT
62871108 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
27 107 0.70
28 46 0.30
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:62870994 original size:55 final size:54
Alignment explanation
Indices: 62870906--62871107 Score: 244
Period size: 55 Copynumber: 3.7 Consensus size: 54
62870896 TGAGTCCGCT
* * * * *
62870906 CACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAATCGCA
** * *
62870960 CACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAATCGCA
* ** *
62871015 CACTGTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 CACT-TAGTGCTA-CATAGTCAACTCGCACACTTAGTGCTACATAGTCAAATCGCA
*
62871070 CACTTAGTGCTACATAGTCAAATCGCACACTTAGTGCT
1 CACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
62871108 GTACAATTTA
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
54 44 0.35
55 68 0.55
56 12 0.10
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
CACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAATCGCA
Found at i:62871132 original size:83 final size:83
Alignment explanation
Indices: 62870956--62871106 Score: 225
Period size: 82 Copynumber: 1.8 Consensus size: 83
62870946 GTAATCAAAT
* * * *
62870956 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTGT
1 CGCACACTTAGTGCAACATAGTCAAACTCGCACACTTAGTGCCACATAGTCAAATCGCACACTGT
**
62871021 AGTGCATCATATTCATTT
66 AGTGCATCATATTCATCC
*
62871039 CGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTAGTGCTACATAGTCAAATCGCACACT-T
1 CGCACACTTAGTGCAACATAGTCAAACTCGCACACTTAGTGCCACATAGTCAAATCGCACACTGT
62871102 AGTGC
66 AGTGC
62871107 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 6 0.10
82 32 0.51
83 25 0.40
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (83 bp):
CGCACACTTAGTGCAACATAGTCAAACTCGCACACTTAGTGCCACATAGTCAAATCGCACACTGT
AGTGCATCATATTCATCC
Found at i:62879091 original size:27 final size:27
Alignment explanation
Indices: 62879061--62879261 Score: 251
Period size: 27 Copynumber: 7.4 Consensus size: 27
62879051 TGAGTCCGCT
* * * *
62879061 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
62879088 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62879115 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
62879143 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
62879170 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
62879197 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62879224 CACTTAGTGCTACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62879251 CACTTAGTGCT
1 CACTTAGTGCT
62879262 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 129 0.84
28 24 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:62886054 original size:20 final size:20
Alignment explanation
Indices: 62886031--62886077 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
62886021 AGCTCCAACA
62886031 AGCTCAATTAAGCTCATTTG
1 AGCTCAATTAAGCTCATTTG
* * * *
62886051 AGCTTATTTCAGCTCGTTTG
1 AGCTCAATTAAGCTCATTTG
62886071 AGCTCAA
1 AGCTCAA
62886078 CCTTCAACTC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (20 bp):
AGCTCAATTAAGCTCATTTG
Found at i:62886088 original size:22 final size:22
Alignment explanation
Indices: 62886058--62886101 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
62886048 TTGAGCTTAT
*
62886058 TTCAGCTCGTTTGAGCTCAACC
1 TTCAACTCGTTTGAGCTCAACC
*
62886080 TTCAACTCGTTTGAGCTTAACC
1 TTCAACTCGTTTGAGCTCAACC
62886102 GAGCTTACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (22 bp):
TTCAACTCGTTTGAGCTCAACC
Found at i:62895631 original size:22 final size:23
Alignment explanation
Indices: 62895599--62895641 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
62895589 GCCAAATGAA
*
62895599 TTGGTATTGTAAATATTTATATT
1 TTGGTATTGTAAATATATATATT
*
62895622 TTGGT-TTGTATATATATATA
1 TTGGTATTGTAAATATATATA
62895642 GCCATGAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (23 bp):
TTGGTATTGTAAATATATATATT
Found at i:62898042 original size:18 final size:18
Alignment explanation
Indices: 62898019--62898061 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
62898009 ACTTGAATGA
62898019 CAAATTTTATTCTAGCCT
1 CAAATTTTATTCTAGCCT
62898037 CAAATTTTATTCTAGCCT
1 CAAATTTTATTCTAGCCT
62898055 CAAATTT
1 CAAATTT
62898062 AATATATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (18 bp):
CAAATTTTATTCTAGCCT
Found at i:62908318 original size:30 final size:30
Alignment explanation
Indices: 62908284--62908343 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62908274 TTCCTGAGCC
*
62908284 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
62908314 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
62908344 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:62936295 original size:39 final size:40
Alignment explanation
Indices: 62936160--62936383 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
62936150 TTGAATGCTG
* * * * *
62936160 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
62936200 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62936239 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62936279 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
62936319 TCCGGGTTAAGTCCCGAAGGCA-TTGTGAAAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62936358 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
62936384 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
39 66 0.42
40 82 0.53
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62936300 original size:79 final size:78
Alignment explanation
Indices: 62936160--62936383 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
62936150 TTGAATGCTG
* * * *
62936160 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-AAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
62936224 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * * *
62936239 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCAAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
62936304 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
62936319 TCCGGGTTAAGTCCCGAAGGCATTGTGAAAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
62936384 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
78 9 0.07
79 81 0.66
80 24 0.20
81 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCAAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:62936401 original size:79 final size:79
Alignment explanation
Indices: 62936240--62936416 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 79
62936230 AGATACAAAT
* * ** * *
62936240 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGAAAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
62936305 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* *
62936319 TCCGGGTTAAGTCCCGAAGG-CATTGTGAAAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGAAAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
62936383 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
62936398 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62936417 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 24 0.29
79 58 0.71
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGAAAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:62937846 original size:45 final size:45
Alignment explanation
Indices: 62937782--62937871 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
62937772 TTCCGACAAC
*
62937782 ACATCGAAAATTGAAGGTGATTGTCAAAACCATTCTACTAAAATT
1 ACATCGAAAACTGAAGGTGATTGTCAAAACCATTCTACTAAAATT
*
62937827 ACATCGAAAACTGAAGGTGATTGTCTAAACCATTCTACTAAAATT
1 ACATCGAAAACTGAAGGTGATTGTCAAAACCATTCTACTAAAATT
62937872 GACAATATGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (45 bp):
ACATCGAAAACTGAAGGTGATTGTCAAAACCATTCTACTAAAATT
Found at i:62947773 original size:29 final size:29
Alignment explanation
Indices: 62947648--62947775 Score: 136
Period size: 29 Copynumber: 4.5 Consensus size: 29
62947638 AAACAAGCCT
* *
62947648 AAAT-ACATGCATATGGCCC-CTAGGCCC
1 AAATCACATTCATATGGCCCATTAGGCCC
** * * *
62947675 -AATCTTATTCAGATGACCCATTAGGCCA
1 AAATCACATTCATATGGCCCATTAGGCCC
* *
62947703 AAATCACATTCGTATGGCCCATTAAGCCC
1 AAATCACATTCATATGGCCCATTAGGCCC
*
62947732 AAATCACATTCATATGGCCCATGAGGCCC
1 AAATCACATTCATATGGCCCATTAGGCCC
*
62947761 AAATAACATTCATAT
1 AAATCACATTCATAT
62947776 AATTTCCATC
Statistics
Matches: 80, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 3 0.04
27 10 0.12
28 6 0.08
29 61 0.76
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (29 bp):
AAATCACATTCATATGGCCCATTAGGCCC
Found at i:62950776 original size:44 final size:44
Alignment explanation
Indices: 62950713--62950802 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
62950703 ATCAAATTCG
62950713 TAAACATAGCTCCCAAGCATATTCATATTCGGCAACCACATATT
1 TAAACATAGCTCCCAAGCATATTCATATTCGGCAACCACATATT
62950757 TAAACATAGCTCCCAAGCATATTCATATTCGGCAACCACATATT
1 TAAACATAGCTCCCAAGCATATTCATATTCGGCAACCACATATT
62950801 TA
1 TA
62950803 CTTCCACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.28
Consensus pattern (44 bp):
TAAACATAGCTCCCAAGCATATTCATATTCGGCAACCACATATT
Found at i:62958640 original size:43 final size:43
Alignment explanation
Indices: 62958585--62958699 Score: 164
Period size: 43 Copynumber: 2.7 Consensus size: 43
62958575 ATATCGTACA
*
62958585 ATGCCAAC-GTCCTAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCC-ACTGTCCTAGACGTGGTCTTACACGTAATCACATATCG
62958628 ATGCCACTGTCCTAGACAG-GGTCTTACACGTAATCACATATCG
1 ATGCCACTGTCCTAGAC-GTGGTCTTACACGTAATCACATATCG
* *
62958671 ATGCCAATGTCC-AGATGTGGTCTTACACG
1 ATGCCACTGTCCTAGACGTGGTCTTACACG
62958700 AGAACACATA
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
41 1 0.02
42 16 0.24
43 48 0.73
44 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCTAGACGTGGTCTTACACGTAATCACATATCG
Found at i:62958966 original size:25 final size:25
Alignment explanation
Indices: 62958938--62958989 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
62958928 GGACAACGAT
*
62958938 AATCAAAAC-AGGATGATTATTCGAC
1 AATCAAAACGA-GACGATTATTCGAC
*
62958963 AATCGAAACGAGACGATTATTCGAC
1 AATCAAAACGAGACGATTATTCGAC
62958988 AA
1 AA
62958990 CTTTGGTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.21
Consensus pattern (25 bp):
AATCAAAACGAGACGATTATTCGAC
Found at i:62962951 original size:48 final size:48
Alignment explanation
Indices: 62962890--62963014 Score: 124
Period size: 49 Copynumber: 2.6 Consensus size: 48
62962880 TGTGTACTAG
* *
62962890 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGCAAGCCAA
1 TGTAAGACCTGTCTGGGACATGCATCGGCCTCGAGATATGAAAGCCAA
* * * * * * * * *
62962938 TGTAAAACCTGTCTGGGATACGGTATTGGCGTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACA-TGCATCGGCCTCGAGATATGAAAGCCAA
*
62962987 TGGAAGACCTGTCTGGGACATGGCATCG
1 TGTAAGACCTGTCTGGGACAT-GCATCG
62963015 ACTTTGATGT
Statistics
Matches: 58, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
48 17 0.29
49 41 0.71
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
TGTAAGACCTGTCTGGGACATGCATCGGCCTCGAGATATGAAAGCCAA
Found at i:62963966 original size:10 final size:10
Alignment explanation
Indices: 62963953--62963978 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
62963943 ATGTATTGGC
62963953 TTATATTGAG
1 TTATATTGAG
62963963 TTATATTGAG
1 TTATATTGAG
62963973 TTATAT
1 TTATAT
62963979 GTATATGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (10 bp):
TTATATTGAG
Found at i:62977410 original size:31 final size:31
Alignment explanation
Indices: 62977372--62977431 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
62977362 TTCATATTTC
62977372 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
62977403 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
62977432 ACTGTAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:62977675 original size:24 final size:24
Alignment explanation
Indices: 62977644--62977727 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
62977634 GCCTAGCCTC
*
62977644 TTAATAACTGGGGAAAAATCCATT
1 TTAATAACTGGGGAAAAACCCATT
* *
62977668 TTAATAACTGGGGCATAAGCCCA--
1 TTAATAACTGGGG-AAAAACCCATT
* *
62977691 TTAATAACTGGGGCATAAGCCC-TT
1 TTAATAACTGGGG-AAAAACCCATT
62977715 TTAATAACTGGGG
1 TTAATAACTGGGG
62977728 CATAAGCCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
23 22 0.41
24 26 0.48
25 6 0.11
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (24 bp):
TTAATAACTGGGGAAAAACCCATT
Found at i:62977678 original size:47 final size:47
Alignment explanation
Indices: 62977644--62977764 Score: 161
Period size: 47 Copynumber: 2.6 Consensus size: 47
62977634 GCCTAGCCTC
*
62977644 TTAATAACTGGGGAAAAATCCATTTTAATAACTGGGGCATAAGCCCA
1 TTAATAACTGGGGAAAAAGCCATTTTAATAACTGGGGCATAAGCCCA
* * * *
62977691 TTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCT
1 TTAATAACTGGGGAAAAAGCCATTTTAATAACTGGGGCATAAGCCCA
* * * *
62977738 TTAATAACTAGGGCATAAGCCCTTTTA
1 TTAATAACTGGGGAAAAAGCCATTTTA
62977765 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (47 bp):
TTAATAACTGGGGAAAAAGCCATTTTAATAACTGGGGCATAAGCCCA
Found at i:62977728 original size:24 final size:24
Alignment explanation
Indices: 62977644--62977764 Score: 174
Period size: 23 Copynumber: 5.1 Consensus size: 24
62977634 GCCTAGCCTC
* * * *
62977644 TTAATAACTGGGGAAAAATCCATT
1 TTAATAACTGGGGCATAAGCCCTT
*
62977668 TTAATAACTGGGGCATAAGCCC-A
1 TTAATAACTGGGGCATAAGCCCTT
62977691 TTAATAACTGGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
62977715 TTAATAACTGGGGCATAAGCCC-T
1 TTAATAACTGGGGCATAAGCCCTT
*
62977738 TTAATAACTAGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
62977762 TTA
1 TTA
62977765 CACTTCCTCC
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 44 0.50
24 44 0.50
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (24 bp):
TTAATAACTGGGGCATAAGCCCTT
Found at i:62977838 original size:20 final size:20
Alignment explanation
Indices: 62977813--62977879 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
62977803 TTATGAATAC
62977813 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62977833 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
62977853 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62977873 ACCATGT
1 ATCATGT
62977880 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:62980209 original size:79 final size:79
Alignment explanation
Indices: 62980075--62980247 Score: 219
Period size: 79 Copynumber: 2.2 Consensus size: 79
62980065 CCTTCATAAT
* *
62980075 TTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
62980140 AATGCCTTCGGGAC
66 AATGCCTTCGGGAC
* * *
62980154 TTAACCCGGATTTAG-TAACTCGTACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGC
1 TTAA-CCGGATATAGCT-ACTCGTACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGC
62980216 ACAAATGCCTTC-GGATC
63 ACAAATGCCTTCGGGA-C
*
62980233 TTAGTCCGGATATAG
1 TTA-ACCGGATATAG
62980248 TCACTTAGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
78 4 0.05
79 50 0.61
80 28 0.34
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (79 bp):
TTAACCGGATATAGCTACTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACA
AATGCCTTCGGGAC
Found at i:62980212 original size:39 final size:40
Alignment explanation
Indices: 62980098--62980279 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
62980088 GCTACTCGTT
*
62980098 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
62980138 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
62980178 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
62980217 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
62980258 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
62980280 AGACATCATT
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62980266 original size:79 final size:78
Alignment explanation
Indices: 62980098--62980279 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
62980088 GCTACTCGTT
* *
62980098 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
62980163 ATTTAGTAACTCGTAC
64 ATATAGTAACTC-TAC
* **
62980179 CAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
62980242 ATATAGTCACT-TAGC
64 ATATAGTAACTCTA-C
*
62980257 ACAAAGCCTTCAGGACTTAGCCC
1 -CAAAGCCTTC-GGGCTTAGCCC
62980280 AGACATCATT
Statistics
Matches: 87, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
77 2 0.02
78 5 0.06
79 58 0.67
80 19 0.22
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAAGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTCTAC
Found at i:62988272 original size:79 final size:80
Alignment explanation
Indices: 62988163--62988343 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
62988153 TACTCGTTCA
* **
62988163 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
62988227 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
**
62988243 AATGCCTTCGGG-CTTAGCCCAGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
62988306 TATAGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
62988322 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
62988344 GACATCATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.67
80 26 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:62988345 original size:40 final size:40
Alignment explanation
Indices: 62988142--62988345 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
62988132 CGGAATTTAA
** *
62988142 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62988182 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62988222 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62988261 CCAGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
62988301 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
62988341 CCGGA
1 CCGGA
62988346 CATCATTCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62996406 original size:40 final size:40
Alignment explanation
Indices: 62996327--62996503 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
62996317 CGGATGATAA
* *
62996327 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
62996367 CCGAGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
62996407 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
62996447 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
62996487 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
62996504 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 100 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:62999835 original size:27 final size:27
Alignment explanation
Indices: 62999805--62999978 Score: 197
Period size: 27 Copynumber: 6.4 Consensus size: 27
62999795 TGAGTCCGCT
* * * *
62999805 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* *
62999832 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62999859 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAGTCAAA-TCGCA
** * *
62999887 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
* **
62999914 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAGTCAAATCGCA
*
62999941 CACTTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAGTCAAATCGCA
62999968 CACTTAGTGCT
1 CACTTAGTGCT
62999979 GTCCAATTTA
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAGTCAAATCGCA
Found at i:62999947 original size:82 final size:81
Alignment explanation
Indices: 62999822--62999977 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62999812 TGCTATATAA
* *
62999822 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62999887 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62999904 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62999968 CACTTAGTGC
65 CACTTAGTGC
62999978 TGTCCAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63001766 original size:47 final size:46
Alignment explanation
Indices: 63001695--63001915 Score: 227
Period size: 47 Copynumber: 4.7 Consensus size: 46
63001685 GGCTGTCACA
63001695 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAACAGAGAT-AGT
*
63001743 GCCAGCGTAAGACATGTCTGGGACATGCATCGGCCTCAACAGAGATA--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---CAACAGAGATAGT
* * * *
63001790 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAG-TTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGAGATAGT
* * * * *
63001834 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACACATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA-ACAGAGAT-AGT
63001882 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
63001916 ACAATATATC
Statistics
Matches: 144, Mismatches: 17, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.01
43 4 0.03
44 32 0.22
45 1 0.01
46 9 0.06
47 45 0.31
48 23 0.16
49 16 0.11
50 13 0.09
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAACAGAGATAGT
Found at i:63001853 original size:91 final size:96
Alignment explanation
Indices: 63001694--63001915 Score: 280
Period size: 91 Copynumber: 2.4 Consensus size: 96
63001684 GGGCTGTCAC
*
63001694 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGTGCCAGCGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGAGATGAGTGCCAGCGTAAGACATG
* *
63001759 TCTGGGACATGCATCGGC-CTCA-ACA-GAG
66 TCTGGGACATGCATCAGCACACATACATGAG
* * * *
63001787 ATAGCCAGTGTAAGA-CGTGTCTGGGACA-CGCATCGGCTA-AGAG-T-TGTGCTAGTGTAAGAC
1 --AGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGC-ACAGAGATGAGTGCCAGCGTAAGAC
*
63001847 ATGTCTGGGACATGCATCAGCACACATATATGAG
63 ATGTCTGGGACATGCATCAGCACACATACATGAG
*
63001881 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATCGCATCG
63001916 ACAATATATC
Statistics
Matches: 111, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
91 33 0.30
92 17 0.15
93 26 0.23
94 22 0.20
95 13 0.12
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTCTGGGACATCGCATCGGCACAGAGATGAGTGCCAGCGTAAGACATG
TCTGGGACATGCATCAGCACACATACATGAG
Found at i:63003443 original size:30 final size:30
Alignment explanation
Indices: 63003409--63003469 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
63003399 TTCCCGAGCC
63003409 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
63003439 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
63003469 T
1 T
63003470 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:63005809 original size:50 final size:49
Alignment explanation
Indices: 63005688--63005872 Score: 194
Period size: 50 Copynumber: 3.7 Consensus size: 49
63005678 TGAGGTCGCA
* * * * *
63005688 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTG-CGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGAGTA-CC--AGACTGTAGGTCACG
**
63005739 TGTGTAGTACTAAGTGCAGGCTACTACGAGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGACT-GT-AGGTCACG
* * * *
63005789 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGACTGTAGGTCACG
* *
63005838 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGAGTACCA
63005873 AATAGCTTCG
Statistics
Matches: 115, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 38 0.33
50 42 0.37
51 31 0.27
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGACTGTAGGTCACG
Found at i:63011959 original size:12 final size:12
Alignment explanation
Indices: 63011942--63011967 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63011932 GGTTCGGCAT
63011942 GGCCTAGCACAC
1 GGCCTAGCACAC
63011954 GGCCTAGCACAC
1 GGCCTAGCACAC
63011966 GG
1 GG
63011968 GCATGTATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:63016356 original size:18 final size:18
Alignment explanation
Indices: 63016333--63016385 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
63016323 TAGCCCATTC
* *
63016333 CAGTAACAATAAATAGTG
1 CAGTAACAGTAAACAGTG
* *
63016351 CAGTAATAGTAAGCAGTG
1 CAGTAACAGTAAACAGTG
63016369 CAGTAACAGTAAACAGT
1 CAGTAACAGTAAACAGT
63016386 ATGCAAGTCC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (18 bp):
CAGTAACAGTAAACAGTG
Found at i:63016742 original size:27 final size:27
Alignment explanation
Indices: 63016712--63016803 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
63016702 GGTGTGAAAC
*
63016712 AGTCATCTTACCATAAAAGGGCAAAAT
1 AGTCATTTTACCATAAAAGGGCAAAAT
* *
63016739 AGTCATTTTACCACATAAGGGCAAAAT
1 AGTCATTTTACCATAAAAGGGCAAAAT
*
63016766 AGTCATTTTACCGCAT-AAA-GTCAAAAT
1 AGTCATTTTA-C-CATAAAAGGGCAAAAT
63016793 AGTCATTTTAC
1 AGTCATTTTAC
63016804 TGATTGAGGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 51 0.89
28 3 0.05
29 2 0.04
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
AGTCATTTTACCATAAAAGGGCAAAAT
Found at i:63027278 original size:40 final size:40
Alignment explanation
Indices: 63027229--63027369 Score: 162
Period size: 40 Copynumber: 3.5 Consensus size: 40
63027219 CGGATGTAAC
63027229 AACCAGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
* *
63027269 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
* * * *
63027309 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGA-TATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTA-ACCCGATTATAAT
* *
63027349 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
63027370 ATCTTAGTTC
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
39 5 0.06
40 77 0.88
41 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGATTATAAT
Found at i:63027370 original size:40 final size:40
Alignment explanation
Indices: 63027219--63027385 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
63027209 GAATTTCGCT
* * * * *
63027219 CGGATGTAACAACCAGCACGAATGCCTTCGGGA-CTTA-AC
1 CGGATATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* ** * **
63027258 CCGATTATAATAACCCGCACGAATGCCTTCGGGA-CTTAACC
1 CGGA-TATAATAACTAGCACAAATGCCTTC-GGATCTTAGTC
* *
63027299 CGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGTC
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
* *
63027339 CGGATATAGTAACTAGCACAAATGCCTTCGGATCTTAGTT
1 CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
63027379 CGGATAT
1 CGGATAT
63027386 CATCCAAATA
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 6 0.06
40 99 0.92
41 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
CGGATATAATAACTAGCACAAATGCCTTCGGATCTTAGTC
Found at i:63030559 original size:107 final size:107
Alignment explanation
Indices: 63030373--63030586 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
63030363 CAACTGATTA
63030373 TGATTTCTGAGTGGAAATAGGACAAAATCACGATGGATTTTGTATCGGGTTTACCTCTGATATCG
1 TGATTTCTGAGTGGAAATAGGACAAAATCACGATGGATTTTGTATCGGGTTTACCTCTGATATCG
63030438 AGTAAGAAAGATGCAATCTTGGTTGTTGTTGATAGATTGACT
66 AGTAAGAAAGATGCAATCTTGGTTGTTGTTGATAGATTGACT
63030480 TGATTTCTGAGTGGAAATAGGACAAAATCACGATGGATTTTGTATCGGGTTTACCTCTGATATCG
1 TGATTTCTGAGTGGAAATAGGACAAAATCACGATGGATTTTGTATCGGGTTTACCTCTGATATCG
63030545 AGTAAGAAAGATGCAATCTTGGTTGTTGTTGATAGATTGACT
66 AGTAAGAAAGATGCAATCTTGGTTGTTGTTGATAGATTGACT
63030587 AAATTGGCTC
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.29, C:0.11, G:0.25, T:0.35
Consensus pattern (107 bp):
TGATTTCTGAGTGGAAATAGGACAAAATCACGATGGATTTTGTATCGGGTTTACCTCTGATATCG
AGTAAGAAAGATGCAATCTTGGTTGTTGTTGATAGATTGACT
Found at i:63047310 original size:20 final size:19
Alignment explanation
Indices: 63047276--63047313 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
63047266 CGTATGACCC
63047276 CATTAGTTTTGAAAAATTT
1 CATTAGTTTTGAAAAATTT
*
63047295 CATTATTTTCTGAAAAATT
1 CATTAGTTT-TGAAAAATT
63047314 CTAGAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (19 bp):
CATTAGTTTTGAAAAATTT
Found at i:63050540 original size:32 final size:32
Alignment explanation
Indices: 63050499--63050575 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
63050489 ATGGGCCAGA
* *
63050499 CCCAACTGATACTGGTTCTGATA-AGGGCTAGG
1 CCCAACTGATACTGATTCTGAGATA-GGCTAGG
* *
63050531 CCCAACTGATATTAATTCTGAGATAGGCTAGG
1 CCCAACTGATACTGATTCTGAGATAGGCTAGG
*
63050563 -CCAATTGATACTG
1 CCCAACTGATACTG
63050576 TGATGGGTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 10 0.27
32 26 0.70
33 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (32 bp):
CCCAACTGATACTGATTCTGAGATAGGCTAGG
Found at i:63054982 original size:37 final size:37
Alignment explanation
Indices: 63054932--63055006 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
63054922 ACCGTCAGAG
* *
63054932 TTAGAAAGGATTCATAATGTGTTTCATGTATCTATGT
1 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
63054969 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
1 TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
63055006 T
1 T
63055007 ATGACGGTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (37 bp):
TTAGAAAAGATTCATAATGTGTTTCATGCATCTATGT
Found at i:63056399 original size:40 final size:41
Alignment explanation
Indices: 63056344--63056446 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 41
63056334 AAGAGAAATC
* *
63056344 GGCTATTTGTGGCACTTAGTGTGCAATTAGACATAGCTT-A
1 GGCTATATATGGCACTTAGTGTGCAATTAGACATAGCTTCA
* * *
63056384 GGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCTTCA
1 GGCTATATATGGCACTTAGTGTGCAATTAGACATAGCTTCA
* * *
63056425 -GCTATGTACGACACTTAGTGTG
1 GGCTATATATGGCACTTAGTGTG
63056447 TGAGATATCA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (41 bp):
GGCTATATATGGCACTTAGTGTGCAATTAGACATAGCTTCA
Found at i:63056514 original size:28 final size:27
Alignment explanation
Indices: 63056436--63056515 Score: 108
Period size: 26 Copynumber: 2.9 Consensus size: 27
63056426 CTATGTACGA
* *
63056436 CACTTAGTGTGTGAGATATCAAGTGTGG
1 CACTTAGTGTG-GAGATATCGAGTATGG
63056464 CACTTAGTGT-GAGATATCGAGTATGG
1 CACTTAGTGTGGAGATATCGAGTATGG
*
63056490 CACTTAGTGTGCGAGATATTGAGTAT
1 CACTTAGTGTG-GAGATATCGAGTAT
63056516 TCAACAGCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
26 24 0.51
28 23 0.49
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (27 bp):
CACTTAGTGTGGAGATATCGAGTATGG
Found at i:63059321 original size:47 final size:47
Alignment explanation
Indices: 63059251--63059426 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
63059241 ACATTGGCAC
63059251 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* * * ***
63059298 TAAGATAAGGATATCATGAAAGACCATGCCAAGG--CATGGCATTGGTAAGTTCTG
1 TAAGACAAGGATACCATGTAAGACCATG-TTTGGAACATGGCATT--T--G----G
* * *
63059352 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTTG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
63059399 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
63059427 CCAAGGCATG
Statistics
Matches: 100, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
46 9 0.09
47 51 0.51
48 3 0.03
50 1 0.01
53 3 0.03
54 25 0.25
55 8 0.08
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:63059374 original size:101 final size:101
Alignment explanation
Indices: 63059251--63059481 Score: 358
Period size: 101 Copynumber: 2.3 Consensus size: 101
63059241 ACATTGGCAC
* *
63059251 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
* *
63059316 AAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTG
66 AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
63059352 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTTGTAAGATAAGGATATCATG
1 TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
* *
63059417 TAAGACCATGCCAAGGCATGGCATTGATAATTTCTA
66 AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
*
63059453 TAAGGA-AAGGAA-ATCATGTAAGACCATGT
1 TAA-GACAA-GAATACCATGTAAGACCATGT
63059482 CAAGACATGG
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
101 115 0.96
102 5 0.04
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (101 bp):
TAAGACAAGAATACCATGTAAGACCATGTTTGGAACATGGAATTTGGTAAGATAAGGATATCATG
AAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
Found at i:63059604 original size:108 final size:108
Alignment explanation
Indices: 63059413--63059709 Score: 459
Period size: 108 Copynumber: 2.7 Consensus size: 108
63059403 ATAAGGATAT
* * * * * *
63059413 CATGTAAGACCATGCCAAGGCATGGCATTGATAATTTCTATAAGGAAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
*
63059478 ATGTCAAGACATGGCATTGACGAGTTACTATAAAGCAAAGGTCC
65 ATGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
* *
63059522 TATGTAAGACCATGCCAAGGCATCGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
* * *
63059587 TGTCAAGACATGGCATTGATGAGTTATTATAAGGAAAAGGTCC
66 TGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
**
63059630 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACATAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
63059695 TGTCAAGACATGGCA
66 TGTCAAGACATGGCA
63059710 ATGGTAAGTT
Statistics
Matches: 172, Mismatches: 16, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 139 0.81
109 33 0.19
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGCATTGACGAGTTACTATAAAGAAAAGGTCC
Found at i:63059721 original size:53 final size:53
Alignment explanation
Indices: 63059405--63059709 Score: 319
Period size: 55 Copynumber: 5.7 Consensus size: 53
63059395 TTTGTAAGAT
* * * * *
63059405 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAATTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC-ATAAGGC
* * * * *
63059459 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGACGAGTTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * *
63059514 AAAGG-T-CCTATGTAAGACCATGCCAAGGCATCGCATTGGTGAGTTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* * *
63059567 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-T-TCATAAGG-C
* * *
63059623 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
** *
63059675 AAGGATACCACATAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
63059710 ATGGTAAGTT
Statistics
Matches: 209, Mismatches: 33, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
52 8 0.04
53 69 0.33
54 45 0.22
55 79 0.38
56 8 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:63064058 original size:34 final size:33
Alignment explanation
Indices: 63064020--63064089 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 33
63064010 ATGGCAACAA
63064020 CAGTGTGGGCCTTAGCCC-ATTACAGTACTAGAAT
1 CAGTGTGGGCCTTAGCCCAATT-CAGTA-TAGAAT
*
63064054 CAGTGTGGGCCTTAGCCCAATTCAGTATAGTAT
1 CAGTGTGGGCCTTAGCCCAATTCAGTATAGAAT
63064087 CAG
1 CAG
63064090 AGATGCAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 8 0.24
34 23 0.68
35 3 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (33 bp):
CAGTGTGGGCCTTAGCCCAATTCAGTATAGAAT
Found at i:63064649 original size:17 final size:17
Alignment explanation
Indices: 63064627--63064671 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
63064617 GTTTACCTGT
63064627 GTAGGGCCCACGAGCCC
1 GTAGGGCCCACGAGCCC
*
63064644 GTAGGGCCCACGAGCCT
1 GTAGGGCCCACGAGCCC
*
63064661 GTAGAGCCCAC
1 GTAGGGCCCAC
63064672 ACAGCTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.38, G:0.33, T:0.09
Consensus pattern (17 bp):
GTAGGGCCCACGAGCCC
Found at i:63072231 original size:40 final size:40
Alignment explanation
Indices: 63072194--63072324 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
63072184 GCTACTCGTT
*
63072194 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* * *
63072234 CAATTGCCTTCGGGACTTAACTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
63072274 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
63072313 -AAATGCCTTCGG
1 CAAATGCCTTCGG
63072325 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
38 12 0.15
39 20 0.25
40 46 0.57
41 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:63072331 original size:39 final size:40
Alignment explanation
Indices: 63072222--63072331 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
63072212 AGCCCGGTTA
* *
63072222 TAGTAACTCGCACAATTGCCTTCGGGACTTA-ACTCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGACTTAGACTCGGAAT
* *
63072262 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCT-GGAAT
1 TAGTAACTCGCACAAATGCCTTCGGACTTAGACTCGGAAT
*
63072301 TAGTATCTCGCA-AAATGCCTTCGGATCTTAG
1 TAGTAACTCGCACAAATGCCTTCGGA-CTTAG
63072332 TCCGGATATG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
38 12 0.19
39 26 0.42
40 24 0.39
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGACTTAGACTCGGAAT
Found at i:63080030 original size:39 final size:39
Alignment explanation
Indices: 63079985--63080167 Score: 221
Period size: 39 Copynumber: 4.7 Consensus size: 39
63079975 GCTACTCGTT
* *
63079985 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
63080025 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
63080064 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
63080102 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
63080143 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
63080168 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
37 2 0.02
38 23 0.18
39 55 0.44
40 34 0.27
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:63083598 original size:46 final size:48
Alignment explanation
Indices: 63083511--63083607 Score: 153
Period size: 46 Copynumber: 2.1 Consensus size: 48
63083501 TACATGAATT
* *
63083511 ATTCCTGTCTCCAATGCCATATATATATAATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATACATAATATGGACTTACATGGCTC
*
63083559 ATTCCTGTCTCCAAAGCCATATA-ACA-GATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATACATAATATGGACTTACATGGCTC
63083605 ATT
1 ATT
63083608 TCTATCCTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 22 0.48
47 2 0.04
48 22 0.48
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (48 bp):
ATTCCTGTCTCCAAAGCCATATATACATAATATGGACTTACATGGCTC
Found at i:63091443 original size:93 final size:93
Alignment explanation
Indices: 63091284--63091453 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
63091274 GGATGGTTGA
* * ** *
63091284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCAAACTTGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCAAACTCGTTCAGT
63091349 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* * *
63091377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCAAACTCGTTCAGT
63091442 TGAGTCCGAGTT
66 TGAGTCCGAGTT
63091454 CACTTATGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGCCCAAACTCGTTCAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:63091446 original size:46 final size:46
Alignment explanation
Indices: 63091288--63091461 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
63091278 GGTTGAGCAT
* * *
63091288 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGC
* * * * * * *
63091334 TCAAACTTGTTCAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGA-ATGCAA--ATGC
63091379 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGC
*
63091427 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
63091462 GGCGTTTTAC
Statistics
Matches: 101, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 4 0.04
43 4 0.04
45 3 0.03
46 55 0.54
47 21 0.21
48 4 0.04
50 5 0.05
51 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGC
Found at i:63094136 original size:47 final size:45
Alignment explanation
Indices: 63094063--63094191 Score: 168
Period size: 46 Copynumber: 2.8 Consensus size: 45
63094053 AGATTTGTGT
*
63094063 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-TAAGACGAGA
* * ** *
63094111 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATAAGACGAGA
63094157 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA
63094192 CGGTTACATG
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 3 0.04
46 41 0.57
47 17 0.24
48 11 0.15
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAAGACGAGA
Found at i:63094209 original size:46 final size:46
Alignment explanation
Indices: 63094063--63094227 Score: 133
Period size: 46 Copynumber: 3.5 Consensus size: 46
63094053 AGATTTGTGT
* * *
63094063 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGC--ATTAAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAGATT-A-TC-AGA
* * *
63094111 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATTATCAGA
* * *
63094157 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCACGGTTA-CATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCA-GATTATCA-GA
* *
63094203 GTCAGTGTAAGACCTGTCTGGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
63094228 CGACATTGAC
Statistics
Matches: 99, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
45 4 0.04
46 64 0.65
47 16 0.16
48 12 0.12
49 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAGATTATCAGA
Found at i:63097826 original size:46 final size:46
Alignment explanation
Indices: 63097701--63097827 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
63097691 AACTAGGCAT
* * *
63097701 CCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTACGAATGCGAACGC
1 CCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGAATACGAACGC
*
63097747 CCGAGCTTGTTGAGTTGAGTTCGAGTTGACTTATGAATACGAACGC
1 CCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGAATACGAACGC
*
63097793 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATG
63097828 GGCGGGTTAC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGAATACGAACGC
Found at i:63103843 original size:42 final size:41
Alignment explanation
Indices: 63103750--63103907 Score: 135
Period size: 42 Copynumber: 3.8 Consensus size: 41
63103740 TGTCTGAGAA
* *
63103750 TCGTGTAAGACCGTGTCT-GGACA-CAGGCCTCG-ATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATC-GGCATCGTATT--GATT
*
63103791 TACGTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGTAT-TGATT
**
63103834 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTG-ATT
* * * *
63103877 ACATGTAAGACCACGT-TCGGATCATCGGCAT
1 TCGTGTAAGACCATGTCTGGGA-CATCGGCAT
63103908 TGTACTTGTT
Statistics
Matches: 97, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 50 0.52
43 42 0.43
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATTGATT
Found at i:63103886 original size:85 final size:84
Alignment explanation
Indices: 63103750--63103907 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 84
63103740 TGTCTGAGAA
* * * * *
63103750 TCGTGTAAGACCGTGTCTGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA-
1 TCGTGTAAGACCATGTCTGGACACAGGCATCGATTGAGATTTACATATAAGACCACGT-TCGGAT
63103814 CATCGGCATCGTATCTGATT
65 CATCGGCATCGTATCTGATT
* *
63103834 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTTCGG
1 TCGTGTAAGACCATGTCT-GGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTTCGG
63103897 ATCATCGGCAT
63 ATCATCGGCAT
63103908 TGTACTTGTT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
84 21 0.33
85 36 0.57
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (84 bp):
TCGTGTAAGACCATGTCTGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTTCGGATC
ATCGGCATCGTATCTGATT
Found at i:63105671 original size:44 final size:43
Alignment explanation
Indices: 63105608--63105765 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
63105598 ATGCATTATT
63105608 GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTA
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTA
* * * *
63105651 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTT
1 -GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTA
* *
63105694 GTGTAAGACC-CTATCTGGGACAG-TGGCATCAATATT-TGA-TTA
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTATGATTTA
*
63105736 GATGTAAGACCACGTCTAGGACGTTGGCAT
1 G-TGTAAGACCACGTCTGGGACGTTGGCAT
63105766 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
42 29 0.31
43 35 0.37
44 31 0.33
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGATTTA
Found at i:63110204 original size:17 final size:17
Alignment explanation
Indices: 63110181--63110218 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
63110171 CATGTAACGC
*
63110181 CCCAAAACTCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
63110197 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCCGAAAT
63110214 CCCAA
1 CCCAA
63110219 GCTTTCTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.45, C:0.39, G:0.05, T:0.11
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:63111592 original size:28 final size:28
Alignment explanation
Indices: 63111546--63111659 Score: 111
Period size: 28 Copynumber: 4.0 Consensus size: 28
63111536 GTGAGCATGA
* * * **
63111546 ATATGAATGTGACTAGGCCTAACAGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
63111574 ATATAAATGTGATTGGGCCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* * *
63111602 AGATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
63111631 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
63111659 A
1 A
63111660 GATACAGGTA
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
28 47 0.67
29 23 0.33
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:63111625 original size:29 final size:28
Alignment explanation
Indices: 63111582--63111668 Score: 104
Period size: 28 Copynumber: 3.1 Consensus size: 28
63111572 CCATATAAAT
63111582 GTGATTGGGCCTAATGGGCCAGATACAG
1 GTGATTGGGCCTAATGGGCCAGATACAG
* *
63111610 GTGATTTGGGCCTAATGGGCCATATGA-AT
1 GTGA-TTGGGCCTAATGGGCCAGAT-ACAG
* * *
63111639 ATGAATGGGCTTAATGGGCCAGATACAG
1 GTGATTGGGCCTAATGGGCCAGATACAG
63111667 GT
1 GT
63111669 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
27 1 0.02
28 23 0.48
29 23 0.48
30 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.25
Consensus pattern (28 bp):
GTGATTGGGCCTAATGGGCCAGATACAG
Found at i:63111654 original size:57 final size:57
Alignment explanation
Indices: 63111561--63111668 Score: 162
Period size: 57 Copynumber: 1.9 Consensus size: 57
63111551 AATGTGACTA
* *
63111561 GGCCTAACAGGCCATATAAATGTGATTGGGCCTAATGGGCCAGATACAGGTGATTTG
1 GGCCTAACAGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGTGATTTG
** * *
63111618 GGCCTAATGGGCCATATGAATATGAATGGGCTTAATGGGCCAGATACAGGT
1 GGCCTAACAGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGT
63111669 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (57 bp):
GGCCTAACAGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGTGATTTG
Found at i:63115813 original size:29 final size:29
Alignment explanation
Indices: 63115771--63115847 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
63115761 TGTATGTGAC
* *
63115771 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
63115800 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
*
63115829 TGGGCCTAATGGGCTATAT
1 TGGGCCTAATGGGCCATAT
63115848 TAATATGAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:63116776 original size:18 final size:18
Alignment explanation
Indices: 63116730--63116782 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
63116720 TGTAATAAGG
63116730 TTTTCATTATGTTATTATTA
1 TTTTCATTA--TTATTATTA
* **
63116750 CTTGAATTATTATTATTA
1 TTTTCATTATTATTATTA
*
63116768 TTTTCATTATAATTA
1 TTTTCATTATTATTA
63116783 CGAGAAGTTG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
18 20 0.77
20 6 0.23
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTCATTATTATTATTA
Found at i:63117946 original size:64 final size:64
Alignment explanation
Indices: 63117845--63117973 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
63117835 ATAACATGAA
*
63117845 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTATCAATTT
63117909 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTATCAATTT
1 AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTATCAATTT
63117973 A
1 A
63117974 CTTACTTTCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (64 bp):
AGGATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTATCAATTT
Found at i:63150659 original size:39 final size:39
Alignment explanation
Indices: 63150613--63150699 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
63150603 GACTTAATGT
* *
63150613 CTAGCAGGCCTCGTCCCTGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTCCCGGTAATAAATTCAGGTTTATAC
* *
63150652 CTAGCAGGCCTCGTGCCGGTAATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCGTCCCGGTAATAAATTCAGGTTTATAC
63150691 CTAGCAGGC
1 CTAGCAGGC
63150700 TAATTGCCGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTCCCGGTAATAAATTCAGGTTTATAC
Found at i:63158816 original size:39 final size:39
Alignment explanation
Indices: 63158760--63158846 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
63158750 GAGTTAATGT
*
63158760 CTAGTAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
* *
63158799 CTAGCAGGCCTCGTGCCGGTGATAAGTTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
63158838 CTAGCAGGC
1 CTAGCAGGC
63158847 TAATTGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCATGCCGGTGATAAATTCAGGTTTATAC
Found at i:63165765 original size:46 final size:45
Alignment explanation
Indices: 63165712--63165840 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 45
63165702 TAGTTGAGCA
63165712 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-C
63165758 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
* * * *
63165803 GCCTGAGCTCGTTGAGTTGAGTTCGAGTTTACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63165841 GCGAGTTACA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 3 0.04
46 75 0.96
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
Found at i:63173284 original size:46 final size:46
Alignment explanation
Indices: 63173234--63173406 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
63173224 TGGTTGAGCA
* *
63173234 TCCGAACTCGTTGAGTTCAGTCAGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63173280 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
* *
63173324 GCATCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63173371 CCCGAGCTCGTTGAGTTGAGTCCGAGTT-GCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63173407 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 34 0.32
46 54 0.51
47 2 0.02
48 4 0.04
49 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63173392 original size:91 final size:93
Alignment explanation
Indices: 63173231--63173398 Score: 286
Period size: 91 Copynumber: 1.8 Consensus size: 93
63173221 GGATGGTTGA
* *
63173231 GCATCCGAACTCGTTGAGTTCAGTCAGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCAGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63173296 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63173324 GCAT-CGAACTCGTTGAGTTGAGTC-GAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTCAGTCAGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63173387 TGAGTCCGAGTT
66 TGAGTCCGAGTT
63173399 GCTTATGGGC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 48 0.68
92 19 0.27
93 4 0.06
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTCAGTCAGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63188528 original size:95 final size:95
Alignment explanation
Indices: 63188362--63188549 Score: 322
Period size: 95 Copynumber: 2.0 Consensus size: 95
63188352 ATTTCACCCG
*
63188362 CAAACCGATGGTCAATTGGAAAGAATGACTCAGATCTTAGAGGACTTGTTACGGTGTTGGGTTCT
1 CAAACCGATGGTCAATTGGAAAGAATGACTCAGATCTTAGAGGACATGTTACGGTGTTGGGTTCT
*
63188427 CAAATTTCAAGGTAGTTGGGAAATGTACCA
66 CAAATTTCAAGGTAGTTGGGAAAAGTACCA
* * *
63188457 CAAACCGATGGTCAATTGGAAAGAATGATTCAGGTCTTAGAGGACATGTTAGGGTGTTGGGTTCT
1 CAAACCGATGGTCAATTGGAAAGAATGACTCAGATCTTAGAGGACATGTTACGGTGTTGGGTTCT
*
63188522 CGAATTTCAAGGTAGTTGGGAAAAGTAC
66 CAAATTTCAAGGTAGTTGGGAAAAGTAC
63188550 TGGCCATTGG
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 87 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (95 bp):
CAAACCGATGGTCAATTGGAAAGAATGACTCAGATCTTAGAGGACATGTTACGGTGTTGGGTTCT
CAAATTTCAAGGTAGTTGGGAAAAGTACCA
Found at i:63190540 original size:46 final size:45
Alignment explanation
Indices: 63190475--63190638 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 45
63190465 TGTGAGAGCT
* * * * *
63190475 AGTGAAAGACTTGTTTGGGAAATGCATCGGCCTCGAGACATAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGACATAAGCC
* *
63190521 AGTGTAAGACATGTCTGGGACATGCGTCGGCTACGAGATGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGA-CATAAGCC
* * * * *
63190567 AGTGTAAGCCCATGTCTGGGACATGGCTTCGACTTGAGGCATAAGCC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCTCGAGACATAAGCC
*
63190614 AGTGTAAGACCGTGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
63190639 GCATTGGCAC
Statistics
Matches: 97, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 44 0.45
47 44 0.45
48 7 0.07
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGACATAAGCC
Found at i:63190614 original size:47 final size:46
Alignment explanation
Indices: 63190508--63190640 Score: 137
Period size: 47 Copynumber: 2.8 Consensus size: 46
63190498 GCATCGGCCT
* * *
63190508 CGAGACATAAGCTAGTGTAAGACATGTCTGGGACAT-GCGTCGGCTA
1 CGAG-CATAAGCCAGTGTAAGCCATGTCTGGGACATGGCGTCGACTA
*
63190554 CGAG-ATGATAGCCAGTGTAAGCCCATGTCTGGGACATGGCTTCGACT-
1 CGAGCAT-A-AGCCAGTGTAAG-CCATGTCTGGGACATGGCGTCGACTA
* *
63190601 TGAGGCATAAGCCAGTGTAAGACCGTGTCTGGGACATGGC
1 CGA-GCATAAGCCAGTGTAAG-CCATGTCTGGGACATGGC
63190641 ATTGGCACCT
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
44 2 0.03
45 1 0.01
46 15 0.20
47 45 0.61
48 9 0.12
49 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (46 bp):
CGAGCATAAGCCAGTGTAAGCCATGTCTGGGACATGGCGTCGACTA
Found at i:63191774 original size:22 final size:21
Alignment explanation
Indices: 63191749--63191810 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
63191739 TGGAATGCTC
63191749 ACACGGGCGTGTTGCCCCTCCT
1 ACACGGGCGTGTTGCCCCT-CT
*
63191771 ACACGGGCATGTTGCCCCTCT
1 ACACGGGCGTGTTGCCCCTCT
63191792 -CACAGGGACGTG-TGCCCCT
1 ACAC-GGG-CGTGTTGCCCCT
63191811 ATGTCAAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
20 3 0.08
21 12 0.33
22 21 0.58
ACGTcount: A:0.13, C:0.39, G:0.27, T:0.21
Consensus pattern (21 bp):
ACACGGGCGTGTTGCCCCTCT
Found at i:63194480 original size:44 final size:43
Alignment explanation
Indices: 63194414--63194497 Score: 134
Period size: 44 Copynumber: 1.9 Consensus size: 43
63194404 TGTTGACATT
*
63194414 GATTTGAGATATTGTGTAAGACCGTGTCTGGGACATAGGCCTC
1 GATTTGAGATATTGTGTAAGACCATGTCTGGGACATAGGCCTC
63194457 GATTTGAGAT-TTACGTGTAAGACCATGTCTGGGACATAGGC
1 GATTTGAGATATT--GTGTAAGACCATGTCTGGGACATAGGC
63194498 ATCATATCTG
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 2 0.05
43 10 0.26
44 26 0.68
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (43 bp):
GATTTGAGATATTGTGTAAGACCATGTCTGGGACATAGGCCTC
Found at i:63196609 original size:43 final size:43
Alignment explanation
Indices: 63196548--63196641 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
63196538 AACGAACTCG
*
63196548 CACACTTAGTGATAATTAATTAGCTGAAACTATAATTGTATCC
1 CACACTTAGTGACAATTAATTAGCTGAAACTATAATTGTATCC
* * ** *
63196591 CACACTTAGTGCCAATTAATTAGTTGAGGCTATAATTGTATCG
1 CACACTTAGTGACAATTAATTAGCTGAAACTATAATTGTATCC
63196634 CACACTTA
1 CACACTTA
63196642 ATGCTTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (43 bp):
CACACTTAGTGACAATTAATTAGCTGAAACTATAATTGTATCC
Found at i:63204065 original size:38 final size:38
Alignment explanation
Indices: 63204015--63204122 Score: 200
Period size: 38 Copynumber: 2.9 Consensus size: 38
63204005 ATCTCAACAT
63204015 ATACT-GGCCGAAGCCTTTTCATATTTCATATTTCATA
1 ATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATA
63204052 ATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATA
1 ATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATA
*
63204090 ATACTGGGCCGAAGCCTTTTCATATTTTATATT
1 ATACTGGGCCGAAGCCTTTTCATATTTCATATT
63204123 ACTAGGCCGA
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
37 5 0.07
38 64 0.93
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (38 bp):
ATACTGGGCCGAAGCCTTTTCATATTTCATATTTCATA
Found at i:63204073 original size:31 final size:31
Alignment explanation
Indices: 63204038--63204139 Score: 114
Period size: 31 Copynumber: 3.1 Consensus size: 31
63204028 CCTTTTCATA
63204038 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
63204075 ATTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
* * *
63204107 TTTCATATTTTATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
63204138 TT
1 TT
63204140 ACTGCAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
31 30 0.49
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.46
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:63204424 original size:27 final size:27
Alignment explanation
Indices: 63204366--63204439 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
63204356 TCTTTTTAAT
63204366 AACTGGGGCATAAGCCC-TTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
*
63204392 AGCTGGGGCATAAGCCCTTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTTCGGTA
63204419 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
63204440 GCACTTCCCC
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
26 16 0.36
27 29 0.64
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (27 bp):
AACTGGGGCATAAGCCCTTTTTCGGTA
Found at i:63204551 original size:20 final size:20
Alignment explanation
Indices: 63204488--63204554 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
63204478 TTATGAATAC
63204488 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63204508 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63204528 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
63204548 ATCATGT
1 ATCATGT
63204555 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63206207 original size:24 final size:24
Alignment explanation
Indices: 63206157--63206372 Score: 299
Period size: 24 Copynumber: 9.0 Consensus size: 24
63206147 GCTTTATCAT
*
63206157 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
63206182 ATAACTGGGGCAAAAGGCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63206206 ATAACTGGTGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63206230 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
** *
63206254 ATAACTAAGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
63206278 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63206302 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
63206326 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63206350 ATCACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63206373 CCACTTCCTC
Statistics
Matches: 168, Mismatches: 22, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
24 157 0.93
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63206451 original size:20 final size:20
Alignment explanation
Indices: 63206423--63206488 Score: 105
Period size: 20 Copynumber: 3.3 Consensus size: 20
63206413 TATGAATACC
*
63206423 TCATATGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63206443 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
63206463 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
63206483 CCATGT
1 TCATGT
63206489 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:63206571 original size:25 final size:25
Alignment explanation
Indices: 63206525--63206572 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63206515 ATATATAAAC
* * * *
63206525 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63206550 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63206573 CATGTTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63214370 original size:24 final size:24
Alignment explanation
Indices: 63214317--63214532 Score: 272
Period size: 24 Copynumber: 9.0 Consensus size: 24
63214307 GCTTTATCAT
*
63214317 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
63214342 ATAACTGGGGCAAAATCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63214366 TTAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63214390 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63214414 ATTACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
63214438 ATAACTAGGGCATAAGACCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63214462 ATAACTAGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
63214486 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
63214510 ATCACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63214533 GCACTTCCTC
Statistics
Matches: 169, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
24 158 0.93
25 11 0.07
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63214609 original size:20 final size:20
Alignment explanation
Indices: 63214584--63214648 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
63214574 ATGAATACCA
63214584 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
* *
63214604 CATGTGCATATCATACGTGT
1 CATGTGCATATCATACATAT
* * *
63214624 CATGCGCATATCATGCATAC
1 CATGTGCATATCATACATAT
63214644 CATGT
1 CATGT
63214649 TTATCAAAAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:63214713 original size:25 final size:25
Alignment explanation
Indices: 63214685--63214732 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63214675 ATATATAAAC
* * *
63214685 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
63214710 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
63214733 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:63220715 original size:38 final size:38
Alignment explanation
Indices: 63220671--63220769 Score: 171
Period size: 38 Copynumber: 2.6 Consensus size: 38
63220661 TATACTGGCT
63220671 GAAGCCTTTTCATATTTCATATTTCATAATACTGGAAC
1 GAAGCCTTTTCATATTTCATATTTCATAATACTGGAAC
**
63220709 GAAGCCTTTTCATATTTCATATTTCATAATACTGGGCC
1 GAAGCCTTTTCATATTTCATATTTCATAATACTGGAAC
*
63220747 AAAGCCTTTTCATATTTCATATT
1 GAAGCCTTTTCATATTTCATATT
63220770 ACTGGGCCGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.41
Consensus pattern (38 bp):
GAAGCCTTTTCATATTTCATATTTCATAATACTGGAAC
Found at i:63220758 original size:31 final size:31
Alignment explanation
Indices: 63220723--63220786 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
63220713 CCTTTTCATA
63220723 TTTCATATTTCATAATACTGGGCCAAAGCCT
1 TTTCATATTTCATAATACTGGGCCAAAGCCT
* *
63220754 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCAAAGCCT
63220785 TT
1 TT
63220787 ACTGCAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCAAAGCCT
Found at i:63221074 original size:27 final size:26
Alignment explanation
Indices: 63221013--63221086 Score: 103
Period size: 27 Copynumber: 2.8 Consensus size: 26
63221003 TCTTTTTAAT
* *
63221013 AACTGGGGCATAAGCCCTTCTCGGTA
1 AACTGGGGCATAAGCCTTTTTCGGTA
63221039 AACTGGGGCATAAGCTCTTTTTCGGTA
1 AACTGGGGCATAAGC-CTTTTTCGGTA
*
63221066 AACTAGGGCATAAGCACTTTT
1 AACTGGGGCATAAGC-CTTTT
63221087 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 15 0.35
27 28 0.65
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCTTTTTCGGTA
Found at i:63221199 original size:20 final size:20
Alignment explanation
Indices: 63221136--63221202 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
63221126 TTATGAATAC
*
63221136 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
63221156 AACATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63221176 ATCATGTGCATGTCATATCA-
1 ATCATGTGCATATCATA-CAT
63221196 ATCATGT
1 ATCATGT
63221203 ATATCAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63222738 original size:21 final size:21
Alignment explanation
Indices: 63222713--63222755 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
63222703 CAACACTTAC
63222713 ACGCCACCCTTATAGCTCCTT
1 ACGCCACCCTTATAGCTCCTT
63222734 ACGCCACCCTTATAGCTCCTT
1 ACGCCACCCTTATAGCTCCTT
63222755 A
1 A
63222756 GTAGCGTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.42, G:0.09, T:0.28
Consensus pattern (21 bp):
ACGCCACCCTTATAGCTCCTT
Found at i:63232771 original size:43 final size:43
Alignment explanation
Indices: 63232724--63232828 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
63232714 TTCAACGAAC
*
63232724 TCGCACACTAAGTGCCGATTAATTAGCTGAAACTATAATTGTA
1 TCGCACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTA
* * ** *
63232767 TCGCACACTTAGTGCCAATTAATTAGTTGAGGCTATAATTGTT
1 TCGCACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTA
* **
63232810 TTGCACACTTTGTGCCAAT
1 TCGCACACTAAGTGCCAAT
63232829 ACATTAAACA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (43 bp):
TCGCACACTAAGTGCCAATTAATTAGCTGAAACTATAATTGTA
Found at i:63236264 original size:25 final size:25
Alignment explanation
Indices: 63236236--63236286 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
63236226 TAAAATAAAT
63236236 TACTAATTAATCATGAGGTGTAGTG
1 TACTAATTAATCATGAGGTGTAGTG
63236261 TACTAATTAATCATGAGGTGTAGTG
1 TACTAATTAATCATGAGGTGTAGTG
63236286 T
1 T
63236287 GGTGGTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (25 bp):
TACTAATTAATCATGAGGTGTAGTG
Found at i:63238612 original size:21 final size:21
Alignment explanation
Indices: 63238586--63238626 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63238576 TATATGTGTG
*
63238586 ATAGTTTCGTATGC-TAATTTT
1 ATAGTTT-GGATGCTTAATTTT
63238607 ATAGTTTGGATGCTTAATTT
1 ATAGTTTGGATGCTTAATTT
63238627 GACAAAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.51
Consensus pattern (21 bp):
ATAGTTTGGATGCTTAATTTT
Found at i:63239743 original size:42 final size:43
Alignment explanation
Indices: 63239696--63239813 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 43
63239686 TTCTAGTATG
*
63239696 TGATTTCGTGTGAGACCATGTCTGGGACATTGGCA-TCATATA
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTCATATA
* * * *
63239738 TGATTTCGTGTAAGACCCTGTATGGGACAGTGGCATTCATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTCATATA
** * * *
63239781 TGATAACATGTAAGATCATGTCTGGGACGTTGG
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGG
63239814 AATTGTACGA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTCATATA
Found at i:63239793 original size:43 final size:42
Alignment explanation
Indices: 63239708--63239808 Score: 112
Period size: 43 Copynumber: 2.4 Consensus size: 42
63239698 ATTTCGTGTG
* * ** *
63239708 AGACCATGTCTGGGACATTGGCATCATATATGATTTCGTGTA
1 AGACCATGTATGGGACAGTGGCATCATATATGATAACATGTA
* *
63239750 AGACCCTGTATGGGACAGTGGCATTCATATTTGATAACATGTA
1 AGACCATGTATGGGACAGTGGCA-TCATATATGATAACATGTA
* *
63239793 AGATCATGTCTGGGAC
1 AGACCATGTATGGGAC
63239809 GTTGGAATTG
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 20 0.42
43 28 0.58
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
AGACCATGTATGGGACAGTGGCATCATATATGATAACATGTA
Found at i:63239995 original size:35 final size:35
Alignment explanation
Indices: 63239956--63240028 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
63239946 TAATGAAAGG
63239956 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
1 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
*
63239991 TAAGTATGTCTATAAATAATGACATGTGAATTTCA
1 TAAGTATGTCTATAAATAATGACATGTGAATCTCA
63240026 TAA
1 TAA
63240029 CAATGTATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (35 bp):
TAAGTATGTCTATAAATAATGACATGTGAATCTCA
Found at i:63246606 original size:42 final size:40
Alignment explanation
Indices: 63246561--63246648 Score: 149
Period size: 40 Copynumber: 2.2 Consensus size: 40
63246551 CGGCCGGACC
* *
63246561 ACACATGCATGGGGCAAACCATGTGTCACACACGGTCTAG
1 ACACACGCATGGGGAAAACCATGTGTCACACACGGTCTAG
*
63246601 ACACACGCATGGGTAAAACCATGTGTCACACACGGTCTAG
1 ACACACGCATGGGGAAAACCATGTGTCACACACGGTCTAG
63246641 ACACACGC
1 ACACACGC
63246649 CCGTGTGTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.32, C:0.30, G:0.23, T:0.16
Consensus pattern (40 bp):
ACACACGCATGGGGAAAACCATGTGTCACACACGGTCTAG
Found at i:63247606 original size:48 final size:48
Alignment explanation
Indices: 63247433--63247764 Score: 321
Period size: 48 Copynumber: 6.9 Consensus size: 48
63247423 GGTAAGATGT
* * * * *
63247433 CGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCACATATCAGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACATATCAATGC
* *
63247483 CGATGCCATGTCCCAAACATGGTCTTATACTGGCTCCTACA-A-CAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCT-C-ACATATCAATGC
** * * ** *
63247531 CGATGAGATGTACGAAACATGGTCTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAATGC
* * * * * * *
63247579 TGATGCCATG-TCTCAGACACGATCTTACACTAGCTCTCATAACAATGC
1 CGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCACATATCAATGC
* * * *
63247627 CGAGGCCATGTTCCAAACATGGTCTTACACTGGCTCATACAACAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAATGC
* *
63247675 CGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATATCGAA-GT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-AATGC
* *
63247723 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAT
63247765 AACCCTAGTA
Statistics
Matches: 230, Mismatches: 45, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
46 3 0.01
47 3 0.01
48 185 0.80
49 7 0.03
50 32 0.14
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAATGC
Found at i:63247696 original size:144 final size:144
Alignment explanation
Indices: 63247431--63247763 Score: 461
Period size: 144 Copynumber: 2.3 Consensus size: 144
63247421 AGGGTAAGAT
* * * *
63247431 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGTTCTCACATATCAGTGTCGATGCCATGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATAACAATGCCGAGGCCATGTCC
* * * *
63247496 CAAACATGGTCTTATACTGGCTCCTACAACAATGCCGATGAGATGTACGAAACATGGTCTTACAC
64 CAAACATGGTCTTACACTGGCTCATACAACAATGCCGATGACATGTACCAAACATGGTCTTACAC
*
63247561 TGGCTCACATATTG-A
129 TGGCTCACATATCGAA
* * * * * *
63247576 GGCTGATGCCATGTCTCAGACACGATCTTACACTAGCTCTCATAACAATGCCGAGGCCATGTTCC
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGAGGCCATGTCCC
* * *
63247641 AAACATGGTCTTACACTGGCTCATACAACAATGCCGATGCCATGTTCCAAACATGGTCTTACATT
65 AAACATGGTCTTACACTGGCTCATACAACAATGCCGATGACATGTACCAAACATGGTCTTACACT
63247706 GGCTCACATATCGAA
130 GGCTCACATATCGAA
*
63247721 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATA
63247764 TAACCCTAGT
Statistics
Matches: 162, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
144 128 0.79
145 5 0.03
146 29 0.18
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (144 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGAGGCCATGTCCCA
AACATGGTCTTACACTGGCTCATACAACAATGCCGATGACATGTACCAAACATGGTCTTACACTG
GCTCACATATCGAA
Found at i:63249760 original size:21 final size:22
Alignment explanation
Indices: 63249713--63249760 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
63249703 TGATGCTGTT
*
63249713 GTGAATTGTAAATGAAAGACTA
1 GTGAATTGTAAATGAAAGAATA
* **
63249735 TTGAATTG-AAATGCCAGAATA
1 GTGAATTGTAAATGAAAGAATA
63249756 GTGAA
1 GTGAA
63249761 ATCCTTCAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (22 bp):
GTGAATTGTAAATGAAAGAATA
Found at i:63249761 original size:115 final size:115
Alignment explanation
Indices: 63249555--63249785 Score: 435
Period size: 115 Copynumber: 2.0 Consensus size: 115
63249545 ATGAATTCGA
*
63249555 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAGATGAAAGACTA
1 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
63249620 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
66 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
*
63249670 TGTGATTCTGGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
1 TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
*
63249735 TTGAATTGAAATGCCAGAATAGTGAAATCCTTCAAATTGAATCAGATGAG
66 TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
63249785 T
1 T
63249786 CAAGTGAATT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (115 bp):
TGTGATTCTAGGTATGGATTGGTTGACTCTACATGATGCTGTTGTGAATTGTAAATGAAAGACTA
TTGAATTGAAATGCCAGAATAATGAAATCCTTCAAATTGAATCAGATGAG
Found at i:63253403 original size:40 final size:40
Alignment explanation
Indices: 63253348--63253529 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
63253338 TATTCGAATG
63253348 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63253388 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63253428 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
63253468 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
63253508 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63253530 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.10
40 118 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Done.