Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 190 of 362
Found at i:63258736 original size:21 final size:22
Alignment explanation
Indices: 63258712--63258792 Score: 87
Period size: 22 Copynumber: 3.7 Consensus size: 22
63258702 ATGCGTATTG
*
63258712 AGTTA-TAATATGTAATGCATT
1 AGTTAGTAAAATGTAATGCATT
*
63258733 AGTTAGTAAAATG-GATGCGTATT
1 AGTTAGTAAAATGTAATGC--ATT
*
63258756 GAGTTA-TAATATGTAATGCATT
1 -AGTTAGTAAAATGTAATGCATT
63258778 AGTTAGTAAAATGTA
1 AGTTAGTAAAATGTA
63258793 TGCCATTTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
21 14 0.29
22 17 0.35
23 9 0.18
24 9 0.18
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (22 bp):
AGTTAGTAAAATGTAATGCATT
Found at i:63258760 original size:45 final size:45
Alignment explanation
Indices: 63258698--63258795 Score: 187
Period size: 45 Copynumber: 2.2 Consensus size: 45
63258688 GGATTAAATG
63258698 ATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAA
1 ATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAA
63258743 ATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAA
1 ATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAA
*
63258788 ATGTATGC
1 ATGGATGC
63258796 CATTTATGTG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (45 bp):
ATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAA
Found at i:63259681 original size:40 final size:40
Alignment explanation
Indices: 63259490--63259674 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
63259480 TCGAATGATG
* * * *
63259490 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63259530 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63259570 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
63259609 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63259650 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63259675 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63259696 original size:79 final size:79
Alignment explanation
Indices: 63259543--63259707 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
63259533 GGACTAAGAT
** **
63259543 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
63259608 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
63259622 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
63259685 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63259701 CCGAAGG
1 CCGAAGG
63259708 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63265434 original size:40 final size:40
Alignment explanation
Indices: 63265378--63265559 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
63265368 TATTCGAATG
*
63265378 ATATCCGGGCTTAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63265418 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
63265458 AAATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
63265498 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
63265538 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63265560 TACATGGGTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 112 0.88
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:63267180 original size:40 final size:40
Alignment explanation
Indices: 63267126--63267318 Score: 291
Period size: 40 Copynumber: 4.9 Consensus size: 40
63267116 GATATAGCTT
*
63267126 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
63267166 CTCACACAATTGCCTTCGGGACTTAGCCC-GTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
63267205 CTCGCACAATTGCCTTCGGGACTTGGCCTGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
63267245 CTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
63267285 CTCGCACAAATGCCTTC-TGACTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63267319 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 50 0.36
40 88 0.64
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:63267238 original size:79 final size:80
Alignment explanation
Indices: 63267113--63267318 Score: 292
Period size: 79 Copynumber: 2.6 Consensus size: 80
63267103 CGGGGTTTAG
* * *
63267113 CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAATT
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAAT
*
63267177 GCCTTCGGGACTTAGC
65 GCCTTCGGGACTTAAC
* * * * *
63267193 CC-GTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCTGGTTATAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
63267257 CCTTCGGGACTTAAC
66 CCTTCGGGACTTAAC
*
63267272 CCGGATATAGTAACTCGCACAAATGCCTTC-TGACTTAGCCCGGTTAT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63267319 CAATCCGAAT
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 82 0.75
80 27 0.25
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (80 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
CCTTCGGGACTTAAC
Found at i:63275193 original size:40 final size:40
Alignment explanation
Indices: 63275139--63275332 Score: 282
Period size: 40 Copynumber: 4.9 Consensus size: 40
63275129 GATATAGCTT
*
63275139 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * * *
63275179 CTCACACAATTGCCTTCGGGAGTTAGCCCGATTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
63275219 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
63275259 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
63275299 CCCGTACAAATGCCTTCTGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63275333 CAATCCGAAT
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 13 0.09
40 125 0.91
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:63275267 original size:80 final size:80
Alignment explanation
Indices: 63275113--63275332 Score: 288
Period size: 80 Copynumber: 2.8 Consensus size: 80
63275103 AAACCAAGTA
* * *
63275113 CCTTCGGG-TTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
63275175 GTAACTCACACAATTG
65 GTAACTCACACAAATG
* * *
63275191 CCTTCGGGAGTTAGCCC-GATTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
63275255 GTAACTCGCACAAATG
65 GTAACTCACACAAATG
* * *
63275271 CCTTCGGGACTTAGCCCGGATATAGTAACCCGTACAAATGCCTTCTGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63275333 CAATCCGAAT
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 8 0.06
79 20 0.16
80 94 0.76
81 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCACACAAATG
Found at i:63279865 original size:62 final size:62
Alignment explanation
Indices: 63279768--63279893 Score: 216
Period size: 62 Copynumber: 2.0 Consensus size: 62
63279758 GAAGCTATGG
*
63279768 GAAAATAGTACCCTAACCTCTTTTCTAATAAGATTTTCAAGGATGAAAATTCCTAGAGGGGA
1 GAAAATAGTACCCTAACCTCTTTTCTAATAAGATTTTCAAGGATGAAAATTCCTAAAGGGGA
* **
63279830 GAAAATAGTACCCTGACCTCTTTTCTAATAAGATTTTCGGGGATGAAAATTCCTAAAGGGGA
1 GAAAATAGTACCCTAACCTCTTTTCTAATAAGATTTTCAAGGATGAAAATTCCTAAAGGGGA
63279892 GA
1 GA
63279894 GTTGTAACAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (62 bp):
GAAAATAGTACCCTAACCTCTTTTCTAATAAGATTTTCAAGGATGAAAATTCCTAAAGGGGA
Found at i:63283889 original size:52 final size:52
Alignment explanation
Indices: 63283826--63283929 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
63283816 CTTCCACGTG
* **
63283826 AAAATAGATTCATTAAGCTTCATTTTGATATTTTATTCATCATCTAATTCTA
1 AAAATAGATTCATTAAGCTTCAATTCCATATTTTATTCATCATCTAATTCTA
*
63283878 AAAATATATTCATTAAGCTTCAATTCCATATTTTATTCATCATCTAATTCTA
1 AAAATAGATTCATTAAGCTTCAATTCCATATTTTATTCATCATCTAATTCTA
63283930 TCTCTAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.36, C:0.15, G:0.04, T:0.45
Consensus pattern (52 bp):
AAAATAGATTCATTAAGCTTCAATTCCATATTTTATTCATCATCTAATTCTA
Found at i:63286403 original size:8 final size:8
Alignment explanation
Indices: 63286390--63286414 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63286380 TGTATAAGGC
63286390 TTTTGTTA
1 TTTTGTTA
63286398 TTTTGTTA
1 TTTTGTTA
63286406 TTTTGTTA
1 TTTTGTTA
63286414 T
1 T
63286415 ATGTGTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (8 bp):
TTTTGTTA
Found at i:63291325 original size:43 final size:43
Alignment explanation
Indices: 63291274--63291411 Score: 122
Period size: 42 Copynumber: 3.2 Consensus size: 43
63291264 TCCCAGATGT
*
63291274 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAATAG
1 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
* *** * * *
63291317 GGTTTTACACAAAATCAAGTAT-GATGCCAATGTCCCAAACAT
1 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
* *
63291359 GGTCTTACATGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAC-G
1 GGTCTTACATGT-AATCA-AATATCGATGCC-ACTGTCCCAAACAG
63291402 TGGTCTTACA
1 -GGTCTTACA
63291412 CGATAACACA
Statistics
Matches: 73, Mismatches: 17, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
42 25 0.34
43 23 0.32
44 24 0.33
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
Found at i:63291367 original size:42 final size:42
Alignment explanation
Indices: 63291286--63291412 Score: 112
Period size: 44 Copynumber: 3.0 Consensus size: 42
63291276 TCTTACATGT
* * * * *
63291286 AATCAAATATCGATGCCACTGTCCCAAATAGGGTTTTACACAA
1 AATCAAGTAT-GATGCCAATGTCCCAAACATGGTCTTACACAA
**
63291329 AATCAAGTATGATGCCAATGTCCCAAACATGGTCTTACATGTA
1 AATCAAGTATGATGCCAATGTCCCAAACATGGTCTTACA-CAA
* * * *
63291372 AATCATAAGT-CGATGCCAACGTCCCAGACGTGGTCTTACAC
1 AATC--AAGTATGATGCCAATGTCCCAAACATGGTCTTACAC
63291413 GATAACACAT
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 25 0.36
43 14 0.20
44 26 0.38
45 4 0.06
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
AATCAAGTATGATGCCAATGTCCCAAACATGGTCTTACACAA
Found at i:63297361 original size:27 final size:26
Alignment explanation
Indices: 63297330--63297533 Score: 203
Period size: 27 Copynumber: 7.6 Consensus size: 26
63297320 ATATTGAGTC
* *
63297330 CGCACACTCAGTGCTATATCATCAACT
1 CGCACACTTAGTGCTACAT-ATCAACT
* *
63297357 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACAT-ATCAACT
63297384 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-TC-AACT
** * *
63297412 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACAT-ATCAACT
* **
63297439 CGCACACTTAGTGC-ATCATTTCATTT
1 CGCACACTTAGTGCTA-CATATCAACT
* *
63297465 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATA-TCAACT
*
63297492 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATA-TCAACT
63297519 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63297534 GTACAATTTA
Statistics
Matches: 153, Mismatches: 18, Indels: 12
0.84 0.10 0.07
Matches are distributed among these distances:
26 23 0.15
27 108 0.71
28 22 0.14
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACATATCAACT
Found at i:63305426 original size:27 final size:27
Alignment explanation
Indices: 63305396--63305599 Score: 250
Period size: 27 Copynumber: 7.6 Consensus size: 27
63305386 ATATTGAGTC
* * * *
63305396 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
63305423 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63305450 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
63305478 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
63305505 CGCACACTTAGTGC-ATCAT-TTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
63305531 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63305558 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
63305585 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63305600 GTACAATTTA
Statistics
Matches: 156, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
26 22 0.14
27 111 0.71
28 23 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:63319880 original size:42 final size:42
Alignment explanation
Indices: 63319786--63320155 Score: 490
Period size: 42 Copynumber: 8.8 Consensus size: 42
63319776 CAATGTCGAC
* ** * **
63319786 GTCCCAGACGTGGTCTTACATGTAATTCAG-TATCGATGCCTCT
1 GTCCCAGACATGGTCTTACA-CAAAATCAGATA-CGATGCCGAT
*
63319829 GTCCCAGACAAGGTCTTACACAAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
* * * *
63319871 GTCCTAGACATGGCCTTACACAAAATCAGATAGGATGTCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
* *
63319913 GTCTCAGACATGGTCTTACACAAAATTAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
* * * *
63319955 GTCTCAGACATGGTCTTACACAAAATCAAATACGTTACCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
* *
63319997 GTCCCAGGCACGGTCTTACACAAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
*
63320039 GTCCCAGACATGGTCTTTCACAAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
* * **
63320081 GTCCTAGACATGGTGTTACACAAAATCAGATATAATGCCGAT
1 GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
*
63320123 GTCCCAGACATGGTCTTACACGAAATCAGATAC
1 GTCCCAGACATGGTCTTACACAAAATCAGATAC
63320156 AATGTCAACG
Statistics
Matches: 286, Mismatches: 40, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
42 266 0.93
43 20 0.07
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACAAAATCAGATACGATGCCGAT
Found at i:63325510 original size:47 final size:47
Alignment explanation
Indices: 63325458--63325718 Score: 396
Period size: 47 Copynumber: 5.6 Consensus size: 47
63325448 ATACATGAGC
* *
63325458 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
* *
63325505 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
63325552 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
* * * *
63325599 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
* * **
63325646 TAAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
* *
63325693 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCAAATGTGATGAA
63325719 CCTGGATGTG
Statistics
Matches: 202, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 202 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTATGTGA
Found at i:63325525 original size:24 final size:24
Alignment explanation
Indices: 63325498--63325572 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
63325488 AACATGCATT
63325498 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
* * **
63325522 TGTGATG--AATG-TGAACAT-GCATT
1 TGTG-TGCTAAGGCCG-A-ATGGCAAA
63325545 TGTGTGCTAAGGCCGAATGGCAAA
1 TGTGTGCTAAGGCCGAATGGCAAA
63325569 TGTG
1 TGTG
63325573 ATGAATGTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 13 0.36
24 17 0.47
25 3 0.08
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (24 bp):
TGTGTGCTAAGGCCGAATGGCAAA
Found at i:63325548 original size:23 final size:23
Alignment explanation
Indices: 63325475--63325548 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
63325465 GAATGGCAAA
63325475 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
63325498 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
63325522 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
63325545 TGTG
1 TGTG
63325549 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:63325715 original size:22 final size:22
Alignment explanation
Indices: 63325640--63325715 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
63325630 ACATGTATAT
*
63325640 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
63325662 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
63325686 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
63325709 ATGTGAT
1 ATGTGAT
63325716 GAACCTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:63328453 original size:50 final size:50
Alignment explanation
Indices: 63328380--63328614 Score: 237
Period size: 50 Copynumber: 4.7 Consensus size: 50
63328370 TAAAATGGTT
* *
63328380 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* * * *
63328430 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT--ATGCATACCCGACAAT
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATG--TACCAGA-TAG
* * * ** * *
63328481 TTCA-ATCACGTGTGT-GTACTAAGTGCAGGCTATTACGCGTATCAGATGG
1 TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* * *
63328530 TTAGGTCACATGTGTAGTACTAAGTCCAGGCTACTACATGTACCGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
* *
63328580 TT-GGTCGCATGTGTAGTACTAAGTGCAAGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
63328615 TGCATACCAG
Statistics
Matches: 148, Mismatches: 29, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
48 4 0.03
49 41 0.28
50 90 0.61
51 11 0.07
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
Found at i:63328535 original size:100 final size:101
Alignment explanation
Indices: 63328385--63328565 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
63328375 TGGTTTTAGG
* * *
63328385 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
63328450 TAAGTGCAGGCTACTATGCATACCCGACAATTTCAA
66 TAAGTCCAGGCTACTATGCATACCCGACAATTTCAA
* * * *
63328486 TCACGTGTGT-GTACTAAGTGCAGGCTATTACGCGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAGTTAGGTCACATGTGTAGTAC
63328550 TAAGTCCAGGCTACTA
66 TAAGTCCAGGCTACTA
63328566 CATGTACCGG
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 62 0.86
101 10 0.14
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTCCAGGCTACTATGCATACCCGACAATTTCAA
Found at i:63328657 original size:150 final size:150
Alignment explanation
Indices: 63328380--63328660 Score: 395
Period size: 150 Copynumber: 1.9 Consensus size: 150
63328370 TAAAATGGTT
* **
63328380 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGT
* * * * * *
63328445 AGTACTAAGTGCAGGCTACTATGCATACCCGACAATTTCAATCACGTGTGTGTACTAAGTGCAGG
66 AGTACTAAGTGCAAGCTACTATGCATACCAGACAACTTCAATCAAGGGTGTGTAATAAGTGCAGG
63328510 CTATTACGCGTATCAGATGG
131 CTATTACGCGTATCAGATGG
* *
63328530 TTAGGTCACATGTGTAGTACTAAGTCCAGGCTACTACATGTACCGGATTGTT-GGTCGCATGTGT
1 TTAGGTCACATGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGT
* * * *
63328594 AGTACTAAGTGCAAGCTACTATGCATACCAGATAGCTTCGATTACAAGGGTG-GTAATATGTGCA
66 AGTACTAAGTGCAAGCTACTATGCATACCAGACAACTTC-AAT-CAAGGGTGTGTAATAAGTGCA
63328658 GGC
129 GGC
63328661 AACTGTGTAT
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
149 46 0.40
150 62 0.54
151 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (150 bp):
TTAGGTCACATGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGT
AGTACTAAGTGCAAGCTACTATGCATACCAGACAACTTCAATCAAGGGTGTGTAATAAGTGCAGG
CTATTACGCGTATCAGATGG
Found at i:63339329 original size:47 final size:47
Alignment explanation
Indices: 63339257--63339347 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
63339247 ATGTGAATTC
63339257 GCATGTGTGAAAGTTTCGTACGAAAATTTAATTGTTTGTGTGTTCTT
1 GCATGTGTGAAAGTTTCGTACGAAAATTTAATTGTTTGTGTGTTCTT
*
63339304 GCATGTGTGAAAGTTTCGTATGAAAATTTAATTGTTTGTGTGTT
1 GCATGTGTGAAAGTTTCGTACGAAAATTTAATTGTTTGTGTGTT
63339348 TAATTAGATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (47 bp):
GCATGTGTGAAAGTTTCGTACGAAAATTTAATTGTTTGTGTGTTCTT
Found at i:63345692 original size:17 final size:18
Alignment explanation
Indices: 63345670--63345704 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
63345660 AATCTATGTG
63345670 GGGCCCAC-GAGCCCATT
1 GGGCCCACAGAGCCCATT
*
63345687 GGGCCCACATAGCCCATT
1 GGGCCCACAGAGCCCATT
63345705 TTAGCTCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.20, C:0.40, G:0.26, T:0.14
Consensus pattern (18 bp):
GGGCCCACAGAGCCCATT
Found at i:63348816 original size:50 final size:50
Alignment explanation
Indices: 63348693--63348877 Score: 228
Period size: 50 Copynumber: 3.7 Consensus size: 50
63348683 CTGGTACGCA
*
63348693 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * *
63348742 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * * * *
63348792 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTATCCGGTACACG
*
63348843 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTA
63348878 GCTACATCAT
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
49 31 0.27
50 45 0.39
51 38 0.33
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
Found at i:63348866 original size:101 final size:99
Alignment explanation
Indices: 63348693--63348877 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 99
63348683 CTGGTACGCA
* *
63348693 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
63348758 GTACTACACACGTGACCTAACTATCTGATACATG
66 GTACTACACACGCGACCTAACTATCTGATACATG
* * * * *
63348792 TAGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
*
63348857 TAGTACTACACATGCGACCTA
64 TAGTACTACACACGCGACCTA
63348878 GCTACATCAT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 28 0.37
100 3 0.04
101 44 0.59
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCTGATACATG
Found at i:63354638 original size:43 final size:43
Alignment explanation
Indices: 63354583--63354739 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
63354573 ATATCGTACA
63354583 ATGCCAAC-GTCCCAGACGTGGTCTTACATGCTATCACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACATGCTATCACATATCG
* * *
63354626 ATGCCACTGTCCCAGACAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCACTGTCCCAGAC-GTGGTCTTACATGCTATCACATATCG
* * *
63354667 ATGTCGA-TGTCCCAGACATGGTCTTACA--CATAATCACAGATCG
1 ATG-CCACTGTCCCAGACGTGGTCTTACATGC-T-ATCACATATCG
* *
63354710 ATGCCAATGTCCCAGATGTGGTCTTACATG
1 ATGCCACTGTCCCAGACGTGGTCTTACATG
63354740 AAAACACATA
Statistics
Matches: 92, Mismatches: 11, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
41 24 0.26
42 19 0.21
43 48 0.52
44 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACATGCTATCACATATCG
Found at i:63357661 original size:23 final size:26
Alignment explanation
Indices: 63357599--63357661 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
63357589 CTCACCATAG
63357599 CTCGTATA-AGCTTACTGATATATCAA
1 CTCGTA-AGAGCTTACTGATATATCAA
*
63357625 CTCGTAAGAGCTTACT-AT-TTTCAA
1 CTCGTAAGAGCTTACTGATATATCAA
63357649 CTCGT-AGAGCTTA
1 CTCGTAAGAGCTTA
63357662 TCTTTTAAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
23 8 0.23
24 10 0.29
25 3 0.09
26 14 0.40
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (26 bp):
CTCGTAAGAGCTTACTGATATATCAA
Found at i:63360753 original size:46 final size:45
Alignment explanation
Indices: 63360611--63360753 Score: 125
Period size: 46 Copynumber: 3.1 Consensus size: 45
63360601 CCGCCCCTAC
*
63360611 GTGAACTCGGACTCAACTCAACGAGTTTGGATGC-CTAGTTA-CATCTCA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-A
* * * *
63360659 -CGAACTCAGACTCAACTCAACGAGTTCGGACAT-TTGCAACCAT-AA
1 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTA
63360704 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTA
63360750 GTGA
1 GTGA
63360754 CATGTCACTT
Statistics
Matches: 77, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 33 0.43
47 29 0.38
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTA
Found at i:63368546 original size:41 final size:41
Alignment explanation
Indices: 63368486--63368569 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
63368476 AGCTTGTTTC
63368486 TAAATGATTGATCTATCACCAAGTCAAAGCTAAACATCTAG
1 TAAATGATTGATCTATCACCAAGTCAAAGCTAAACATCTAG
* *
63368527 TAAATGTTTGATCTGTCACCAAGTCAAAGCTAAACATCTAG
1 TAAATGATTGATCTATCACCAAGTCAAAGCTAAACATCTAG
63368568 TA
1 TA
63368570 CCATCAGGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (41 bp):
TAAATGATTGATCTATCACCAAGTCAAAGCTAAACATCTAG
Found at i:63376925 original size:50 final size:49
Alignment explanation
Indices: 63376867--63376965 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 49
63376857 CAAATGAAAG
* * * *
63376867 GACCATATCGTGTAAGACCATAGCTGGTGGGCTATGGCATCATATAGGAA
1 GACCATATCGTATAAGACCATAACAGGTGGGCTATGACATCATAT-GGAA
* *
63376917 GACCATATCGTATAAGACCGTAACAGGTGGGTTATGACATCATATGGAA
1 GACCATATCGTATAAGACCATAACAGGTGGGCTATGACATCATATGGAA
63376966 AGATCTAAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
49 4 0.09
50 39 0.91
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
GACCATATCGTATAAGACCATAACAGGTGGGCTATGACATCATATGGAA
Found at i:63377147 original size:29 final size:29
Alignment explanation
Indices: 63377106--63377298 Score: 106
Period size: 29 Copynumber: 6.5 Consensus size: 29
63377096 AAAACCTCAA
*
63377106 AAAGGAAATGCCTTTGTGGAAAATTTATGG
1 AAAGGAAA-GCCTTTGTGGAAAATATATGG
*
63377136 AAAGGAAAGCCTTTGTGATGATTAATGA-AT-G
1 AAAGGAAAGCCTTTGTG--GA-AAAT-ATATGG
* * *
63377167 AAA-TAGATGCCTTTGTGGCAAATATATGG
1 AAAGGA-AAGCCTTTGTGGAAAATATATGG
* ** * *
63377196 TAAGGAAAGCCTTTGTGGTGAGTACTGAATGA
1 AAAGGAAAGCCTTTGTGGAAAATA-T--ATGG
* * * * * *
63377228 AAATG-ATGACTTTGTGGAAAATCTCTGA
1 AAAGGAAAGCCTTTGTGGAAAATATATGG
* *
63377256 AAAAGAAAGCCTTTATGGAAAATATATGG
1 AAAGGAAAGCCTTTGTGGAAAATATATGG
*
63377285 TAAGGAAAGCCTTT
1 AAAGGAAAGCCTTT
63377299 ATGGTGAATA
Statistics
Matches: 120, Mismatches: 31, Indels: 25
0.68 0.18 0.14
Matches are distributed among these distances:
27 1 0.01
28 12 0.10
29 56 0.47
30 12 0.10
31 28 0.23
32 11 0.09
ACGTcount: A:0.37, C:0.09, G:0.25, T:0.29
Consensus pattern (29 bp):
AAAGGAAAGCCTTTGTGGAAAATATATGG
Found at i:63377178 original size:60 final size:60
Alignment explanation
Indices: 63377113--63377269 Score: 199
Period size: 60 Copynumber: 2.6 Consensus size: 60
63377103 CAAAAAGGAA
* *
63377113 ATGCCTTTGTGGAAAATTTATGGAAAGGAAAGCCTTTGTGATGATTAATGAATG-AAATAG
1 ATGCCTTTGTGGAAAATATATGGAAAGGAAAGCCTTTGTGATGAGTAATGAATGAAAAT-G
* * * *
63377173 ATGCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTTGTGGTGAGTACTGAATGAAAATG
1 ATGCCTTTGTGGAAAATATATGGAAAGGAAAGCCTTTGTGATGAGTAATGAATGAAAATG
* * * * *
63377233 ATGACTTTGTGGAAAATCTCTGAAAAAGAAAGCCTTT
1 ATGCCTTTGTGGAAAATATATGGAAAGGAAAGCCTTT
63377270 ATGGAAAATA
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
60 79 0.95
61 4 0.05
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.31
Consensus pattern (60 bp):
ATGCCTTTGTGGAAAATATATGGAAAGGAAAGCCTTTGTGATGAGTAATGAATGAAAATG
Found at i:63377268 original size:89 final size:87
Alignment explanation
Indices: 63377175--63377448 Score: 318
Period size: 89 Copynumber: 3.1 Consensus size: 87
63377165 TGAAATAGAT
*
63377175 GCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTTGTGGTGAGTACTGAATGAAAATGATGACTT
1 GCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTT-TGGTGAGTACTGAATGAAAATGATGCCTT
*
63377240 TGTGGAAAATCTCTGAAAAAGAAA
65 T-TGGAAAATCTCTGGAAAAGAAA
* * * *
63377264 GCCTTTATGGAAAATATATGGTAAGGAAAGCCTTTATGGTGAATACTGAACGAAAATGATGCCTT
1 GCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTT-TGGTGAGTACTGAATGAAAATGATGCCTT
* *
63377329 TATGGCAAATCTCTGGAAATGAAA
65 T-TGGAAAATCTCTGGAAAAGAAA
* * *** * *
63377353 ACCTTTGTGGCAAATATTTCAAAAGGGAAG-CTTTTCGGTGAGTACTAAATGAAAA-GAATGCCT
1 GCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTTT-GGTGAGTACTGAATGAAAATG-ATGCCT
* *
63377416 TTTTGACAAATCTCTGGAAAAGGAA
64 TTTGGA-AAATCTCTGGAAAAGAAA
63377441 GCCTTTGT
1 GCCTTTGT
63377449 TGTGAGCACT
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
87 4 0.03
88 51 0.33
89 101 0.65
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (87 bp):
GCCTTTGTGGCAAATATATGGTAAGGAAAGCCTTTTGGTGAGTACTGAATGAAAATGATGCCTTT
TGGAAAATCTCTGGAAAAGAAA
Found at i:63378272 original size:29 final size:29
Alignment explanation
Indices: 63378239--63378297 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
63378229 TAAAGCTAGG
63378239 AAACACATAAAGGATATGCAAAGCAACAA
1 AAACACATAAAGGATATGCAAAGCAACAA
*
63378268 AAACACATAAAGGATATGCAAAGTAACAA
1 AAACACATAAAGGATATGCAAAGCAACAA
63378297 A
1 A
63378298 GCAATGTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.59, C:0.15, G:0.14, T:0.12
Consensus pattern (29 bp):
AAACACATAAAGGATATGCAAAGCAACAA
Found at i:63383428 original size:44 final size:44
Alignment explanation
Indices: 63383371--63383475 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 44
63383361 AATAGTTAAA
** ** * * * *
63383371 CAGAATACACCACAAAGGCTAACAGATTGCCACAACGGCCAAAT
1 CAGAATATGCCACAAAGAATAACAGAATACCACAAAGACCAAAT
*
63383415 CAGAATGA-GCCACAAAGAATGACAGAATACCACAAAGACCAAAT
1 CAGAAT-ATGCCACAAAGAATAACAGAATACCACAAAGACCAAAT
63383459 CAGAATATGCCACAAAG
1 CAGAATATGCCACAAAG
63383476 TGTAACACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
43 1 0.02
44 49 0.96
45 1 0.02
ACGTcount: A:0.48, C:0.26, G:0.16, T:0.10
Consensus pattern (44 bp):
CAGAATATGCCACAAAGAATAACAGAATACCACAAAGACCAAAT
Found at i:63383474 original size:24 final size:23
Alignment explanation
Indices: 63383399--63383475 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 23
63383389 CTAACAGATT
* *
63383399 GCCACAACGGCCAAATCAGAATGA
1 GCCACAAAGACCAAATCAGAAT-A
*
63383423 GCCACAAAGA--ATGA-CAGAATA
1 GCCACAAAGACCA-AATCAGAATA
63383444 -CCACAAAGACCAAATCAGAATA
1 GCCACAAAGACCAAATCAGAATA
63383466 TGCCACAAAG
1 -GCCACAAAG
63383476 TGTAACACCC
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
20 9 0.21
21 2 0.05
22 15 0.35
23 1 0.02
24 16 0.37
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (23 bp):
GCCACAAAGACCAAATCAGAATA
Found at i:63387248 original size:22 final size:22
Alignment explanation
Indices: 63387220--63387265 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
63387210 GTGCAGAGGT
63387220 GTAACACCCCGAAACCGTGGCC
1 GTAACACCCCGAAACCGTGGCC
63387242 GTAACACCCCGAAACCGTGGCC
1 GTAACACCCCGAAACCGTGGCC
63387264 GT
1 GT
63387266 CACCGGGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.39, G:0.24, T:0.11
Consensus pattern (22 bp):
GTAACACCCCGAAACCGTGGCC
Found at i:63388776 original size:28 final size:28
Alignment explanation
Indices: 63388736--63388805 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
63388726 CTCGATAAAG
63388736 TCGCACACTTAGTGCT-TA-ATAGTCAAAC
1 TCGCACACTTAGTGCTATACA-A-TCAAAC
*
63388764 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
63388792 TCGCACACTT-GTGC
1 TCGCACACTTAGTGC
63388806 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 4 0.10
28 31 0.79
29 3 0.08
30 1 0.03
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:63396529 original size:28 final size:28
Alignment explanation
Indices: 63396489--63396559 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
63396479 CTCGATAAAG
63396489 TCGCACACTTAGTGCT-TA-ATAGTCAAAC
1 TCGCACACTTAGTGCTATACA-A-TCAAAC
*
63396517 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
63396545 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
63396560 CAATCTCATT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:63401055 original size:15 final size:15
Alignment explanation
Indices: 63401023--63401051 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63401013 ATATTCTGTG
63401023 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
63401038 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
63401052 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:63402275 original size:43 final size:43
Alignment explanation
Indices: 63402225--63402309 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
63402215 ATGTGATTCT
**
63402225 GATATGTGTTTACAAGTAAGACC-CTGTCTGGGACAG-TGGCATC
1 GATATGTGACTACAAGTAAGACCAC-GTCTGGGAC-GTTGGCATC
* *
63402268 GATATGTGACTACATGTAATACCACGTCTGGGACGTTGGCAT
1 GATATGTGACTACAAGTAAGACCACGTCTGGGACGTTGGCAT
63402310 TGTACGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
GATATGTGACTACAAGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:63409294 original size:15 final size:15
Alignment explanation
Indices: 63409262--63409290 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63409252 ATATTTTGTG
63409262 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
63409277 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
63409291 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:63424219 original size:23 final size:23
Alignment explanation
Indices: 63424189--63424234 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63424179 TCAACAATAG
63424189 AAAAAACCAAACATTGAAGAGAT
1 AAAAAACCAAACATTGAAGAGAT
63424212 AAAAAACCAAACATTGAAGAGAT
1 AAAAAACCAAACATTGAAGAGAT
63424235 GCTTTCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13
Consensus pattern (23 bp):
AAAAAACCAAACATTGAAGAGAT
Found at i:63450758 original size:13 final size:13
Alignment explanation
Indices: 63450740--63450764 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63450730 TATATTATAT
63450740 GTGTGAAAAATTC
1 GTGTGAAAAATTC
63450753 GTGTGAAAAATT
1 GTGTGAAAAATT
63450765 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (13 bp):
GTGTGAAAAATTC
Found at i:63451940 original size:44 final size:43
Alignment explanation
Indices: 63451892--63451997 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 43
63451882 ATTGTGGGTG
* * **
63451892 AGACCACGTCTGGGACATTGGCATCGATTTGTGATTTATGTGTA
1 AGACCACGTCTGGGACATTGCCATCAATTTGTGA-TTACATGTA
* *
63451936 AGACC-CTGTTTGGGGA-AGTGCCATCAATTTGTGATTACATGTA
1 AGACCAC-GTCT-GGGACATTGCCATCAATTTGTGATTACATGTA
*
63451979 AGACCAGGTCTGGGACATT
1 AGACCACGTCTGGGACATT
63451998 TGCGTTGTAC
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
42 4 0.08
43 18 0.37
44 23 0.47
45 4 0.08
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
AGACCACGTCTGGGACATTGCCATCAATTTGTGATTACATGTA
Found at i:63452624 original size:53 final size:53
Alignment explanation
Indices: 63452544--63452651 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
63452534 GTGTTAGTTT
63452544 ATTTTGAATGTGTATATATTTAGCCATGCGAAAATAGCTTAATCTTGATATTA
1 ATTTTGAATGTGTATATATTTAGCCATGCGAAAATAGCTTAATCTTGATATTA
*
63452597 ATTTTGAATGTGTATATGTTTAGCCATGCGAAAATAGCTTAATCTTGATATTA
1 ATTTTGAATGTGTATATATTTAGCCATGCGAAAATAGCTTAATCTTGATATTA
63452650 AT
1 AT
63452652 GCTTATATGC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (53 bp):
ATTTTGAATGTGTATATATTTAGCCATGCGAAAATAGCTTAATCTTGATATTA
Found at i:63461493 original size:27 final size:26
Alignment explanation
Indices: 63461463--63461576 Score: 93
Period size: 27 Copynumber: 4.2 Consensus size: 26
63461453 TCACGTAGGC
*
63461463 GCAAAACAGTCATCTTACCACCTAAGG
1 GCAAAACAGTCAT-TTACCACATAAGG
**
63461490 GCAAATTAGTCATTTTACCACATAAGG
1 GCAAAACAGTCA-TTTACCACATAAGG
* * *
63461517 GCGAAACCGTCATTTGACCACATGAGG
1 GCAAAACAGTCATTT-ACCACATAAGG
* * * *
63461544 GAAAAATAGTTAGTTTATCACATAAGG
1 GCAAAACAGTCA-TTTACCACATAAGG
*
63461571 GAAAAA
1 GCAAAA
63461577 TAACTCAACC
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
26 3 0.04
27 62 0.90
28 4 0.06
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.23
Consensus pattern (26 bp):
GCAAAACAGTCATTTACCACATAAGG
Found at i:63461765 original size:24 final size:24
Alignment explanation
Indices: 63461714--63461809 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
63461704 GCTTTATCAT
* *
63461714 ATAACTGGAGGCCT-AGCCTCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
63461739 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
63461763 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
63461787 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
63461810 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
24 53 0.82
25 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:63461881 original size:9 final size:9
Alignment explanation
Indices: 63461867--63461919 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
63461857 ACATCATGTG
63461867 CATATCATA
1 CATATCATA
63461876 CATATCATA
1 CATATCATA
63461885 TGCATATCATA
1 --CATATCATA
* *
63461896 CATGTCATGTG
1 CATATCA--TA
63461907 CATATCATA
1 CATATCATA
63461916 CATA
1 CATA
63461920 CCATGTTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:63461888 original size:20 final size:20
Alignment explanation
Indices: 63461859--63461925 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
63461849 TTATGAATAC
63461859 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63461879 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63461899 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
63461919 ACCATGT
1 ATCATGT
63461926 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:63461890 original size:11 final size:11
Alignment explanation
Indices: 63461859--63461915 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
63461849 TTATGAATAC
*
63461859 ATCATGTGCAT
1 ATCATATGCAT
63461870 ATCATA--CAT
1 ATCATATGCAT
63461879 ATCATATGCAT
1 ATCATATGCAT
63461890 ATCATA--CAT
1 ATCATATGCAT
* *
63461899 GTCATGTGCAT
1 ATCATATGCAT
63461910 ATCATA
1 ATCATA
63461916 CATACCATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:63469794 original size:23 final size:24
Alignment explanation
Indices: 63469751--63469845 Score: 156
Period size: 24 Copynumber: 4.0 Consensus size: 24
63469741 TCCTCTTTCA
* *
63469751 ATAACTGGGACAAAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
63469775 ATAATTGGGG-ATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
63469798 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
63469822 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
63469846 CACTTCCTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
23 21 0.32
24 45 0.68
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:63469820 original size:47 final size:48
Alignment explanation
Indices: 63469751--63469845 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 48
63469741 TCCTCTTTCA
*
63469751 ATAACTGGGACAAAAGCCCTTTTGATAATTGGGG-ATAAGCCCTTTTG
1 ATAACTGGGACAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
* *
63469798 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGACAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
63469846 CACTTCCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
47 31 0.70
48 13 0.30
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (48 bp):
ATAACTGGGACAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
Found at i:63469920 original size:20 final size:20
Alignment explanation
Indices: 63469895--63469933 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
63469885 TATGAATACA
63469895 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
63469915 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
63469934 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:63469939 original size:20 final size:20
Alignment explanation
Indices: 63469896--63469940 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
63469886 ATGAATACAT
**
63469896 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
63469916 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
63469936 CATGT
1 CATGT
63469941 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:63470009 original size:25 final size:25
Alignment explanation
Indices: 63469977--63470024 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63469967 ATATATAAAC
* *
63469977 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
63470002 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
63470025 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:63477755 original size:15 final size:15
Alignment explanation
Indices: 63477708--63477763 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
63477698 CAAGAAAATC
*
63477708 GAATTAAGAAATCCA
1 GAATAAAGAAATCCA
* * *
63477723 -AGATAGATAAACCCA
1 GA-ATAAAGAAATCCA
63477738 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
63477753 GAATAAAGAAA
1 GAATAAAGAAA
63477764 CCCAAGATAC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
14 1 0.03
15 30 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.12, G:0.14, T:0.14
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:63477765 original size:30 final size:30
Alignment explanation
Indices: 63477708--63477767 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
63477698 CAAGAAAATC
* * *
63477708 GAATTAAGAAATCCAAGATAGATAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
63477738 GAATAAAGAAATCC-AGAATAAAGAAACCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
63477768 AGATACGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.57, C:0.17, G:0.13, T:0.13
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:63483920 original size:27 final size:27
Alignment explanation
Indices: 63483890--63484094 Score: 214
Period size: 27 Copynumber: 7.6 Consensus size: 27
63483880 ATATTAAGTC
* *
63483890 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63483917 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63483945 CGCACACTTAGTGCTACATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
63483972 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
63483999 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
63484026 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
63484053 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
63484080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63484095 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 128 0.83
28 27 0.17
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63484029 original size:54 final size:54
Alignment explanation
Indices: 63483890--63484093 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
63483880 ATATTAAGTC
* * **
63483890 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
63483945 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
63483999 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATGGTCAAAT
** *
63484053 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGC
63484094 TGTACAATTT
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 48 0.37
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:63492087 original size:27 final size:27
Alignment explanation
Indices: 63492057--63492261 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
63492047 ATATTAAGTC
* *
63492057 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63492084 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
63492112 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
63492139 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
63492166 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
63492193 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
63492220 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
63492247 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63492262 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63492196 original size:54 final size:54
Alignment explanation
Indices: 63492057--63492260 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
63492047 ATATTAAGTC
* * * **
63492057 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
63492112 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
63492166 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
63492220 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
63492261 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:63492226 original size:81 final size:81
Alignment explanation
Indices: 63492111--63492260 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
63492101 ATAATCAAAC
* * * * * *
63492111 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
63492176 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
63492192 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
63492257 GTGC
66 GTGC
63492261 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:63495587 original size:43 final size:43
Alignment explanation
Indices: 63495539--63495669 Score: 181
Period size: 43 Copynumber: 3.0 Consensus size: 43
63495529 TTTTATCCTA
* * * *
63495539 GAAAAAAGAATTTATAGAGAGGAGAATATAATCTTGGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGATAAGATAATCTTGGGTTGTT
* *
63495582 GAAAAAAGAGTTTTAAAAAGAGAATAAGATAATCTTGGGTTGTT
1 GAAAAAAGA-ATTTAAAAAGAGGATAAGATAATCTTGGGTTGTT
* *
63495626 GAAAAAAGAATTTAAAAAGAGGATAAGATAAACATGGGTTGTT
1 GAAAAAAGAATTTAAAAAGAGGATAAGATAATCTTGGGTTGTT
63495669 G
1 G
63495670 GATTGACCTT
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 40 0.52
44 37 0.48
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.27
Consensus pattern (43 bp):
GAAAAAAGAATTTAAAAAGAGGATAAGATAATCTTGGGTTGTT
Found at i:63511379 original size:12 final size:13
Alignment explanation
Indices: 63511355--63511383 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
63511345 GGGCTATAAC
63511355 TATTGCATTTATT
1 TATTGCATTTATT
63511368 TATTGC-TTTATT
1 TATTGCATTTATT
63511380 TATT
1 TATT
63511384 CATGTACGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:63519451 original size:42 final size:44
Alignment explanation
Indices: 63519372--63519475 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 44
63519362 CTTCGACTTA
63519372 TGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCG-TATT
1 TGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGATATT
* * *
63519415 TGATTT-CGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATATT
1 TGATTTACGTGTAAGACCATGTCTGGGACA-TCAGCATCGATATT
* * *
63519458 CGA-TTACATGTATGACCA
1 TGATTTACGTGTAAGACCA
63519476 CGTAGGACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 29 0.57
43 22 0.43
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (44 bp):
TGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGATATT
Found at i:63521066 original size:28 final size:28
Alignment explanation
Indices: 63520996--63521066 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
63520986 CAGAAGGTAG
**
63520996 AATGACTAAAATACCCCTGAGGGGTAAA
1 AATGACTATTATACCCCTGAGGGGTAAA
* * * **
63521024 AATTACTATTCTACCCCTGATGGGTGGA
1 AATGACTATTATACCCCTGAGGGGTAAA
*
63521052 AATGACTGTTATACC
1 AATGACTATTATACC
63521067 TTAGAGGTAG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (28 bp):
AATGACTATTATACCCCTGAGGGGTAAA
Found at i:63521283 original size:23 final size:23
Alignment explanation
Indices: 63521251--63521307 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
63521241 ACGTTTACCG
*
63521251 CTATT-GCAGCTTTGCTGCATTA
1 CTATTAGCAGCTTTGCTACATTA
*
63521273 CTATTAGCAGCTTTGCTACGTTA
1 CTATTAGCAGCTTTGCTACATTA
*
63521296 CTATTAGTAGCT
1 CTATTAGCAGCT
63521308 ACGCTACGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 5 0.16
23 26 0.84
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (23 bp):
CTATTAGCAGCTTTGCTACATTA
Found at i:63521313 original size:23 final size:23
Alignment explanation
Indices: 63521270--63521315 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
63521260 CTTTGCTGCA
**
63521270 TTACTATTAGCAGCTTTGCTACG
1 TTACTATTAGCAGCTACGCTACG
*
63521293 TTACTATTAGTAGCTACGCTACG
1 TTACTATTAGCAGCTACGCTACG
63521316 ATATTGGTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (23 bp):
TTACTATTAGCAGCTACGCTACG
Found at i:63521489 original size:33 final size:33
Alignment explanation
Indices: 63521447--63521509 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
63521437 ATAGGCCCAC
* * *
63521447 ACTGTTACTGCATAGAGCTTAGGCCCAGACTGT
1 ACTGTTACTGAATAGAGCTCAAGCCCAGACTGT
*
63521480 ACTGTTACTGAATAGGGCTCAAGCCCAGAC
1 ACTGTTACTGAATAGAGCTCAAGCCCAGAC
63521510 CGTTATTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (33 bp):
ACTGTTACTGAATAGAGCTCAAGCCCAGACTGT
Found at i:63526918 original size:39 final size:40
Alignment explanation
Indices: 63526873--63527093 Score: 222
Period size: 39 Copynumber: 5.7 Consensus size: 40
63526863 GCTCCTCGTT
* * * *
63526873 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
63526913 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
63526952 CGAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
63526991 CAAAGGCCTTCGGGACTTAACCCGGAATTA-T--CTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
63527028 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
63527069 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63527094 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 19, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
36 3 0.02
37 27 0.18
38 1 0.01
39 67 0.44
40 45 0.29
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:63526976 original size:79 final size:76
Alignment explanation
Indices: 63526873--63527093 Score: 248
Period size: 79 Copynumber: 2.9 Consensus size: 76
63526863 GCTCCTCGTT
* * *
63526873 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
*
63526938 TTTAATGACTCGCA
66 ATT-AT--CTCGCA
* * * *
63526952 CGAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCACAAAGGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
63527016 AATTATCTCGCA
65 AATTATCTCGCA
* * * * * *
63527028 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
63527092 GA
64 GA
63527094 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
75 3 0.03
76 27 0.22
77 23 0.19
78 19 0.16
79 48 0.40
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (76 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTATCTCGCA
Found at i:63527102 original size:41 final size:41
Alignment explanation
Indices: 63527025--63527102 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
63527015 GAATTATCTC
* * *
63527025 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
63527066 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
63527103 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:63527259 original size:15 final size:13
Alignment explanation
Indices: 63527222--63527251 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
63527212 ACACATAGAG
63527222 CATGATTTAATCA
1 CATGATTTAATCA
63527235 CATGATTTAATCA
1 CATGATTTAATCA
63527248 CATG
1 CATG
63527252 TAATTTAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
CATGATTTAATCA
Found at i:63534754 original size:39 final size:40
Alignment explanation
Indices: 63534709--63534932 Score: 240
Period size: 40 Copynumber: 5.7 Consensus size: 40
63534699 GCTCCTCGTT
* * * * *
63534709 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
63534749 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
63534788 CGAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
63534827 CAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
** * * * *
63534867 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
63534908 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
63534933 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 69 0.44
40 76 0.49
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:63534812 original size:79 final size:79
Alignment explanation
Indices: 63534709--63534932 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
63534699 GCTCCTCGTT
* * *
63534709 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
* *
63534774 TTTAATGACTCGCA
66 ATTAATAACTCGCA
* * * *
63534788 CGAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCACAAAGGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGG
63534852 AATTAATAACTCGCA
65 AATTAATAACTCGCA
* * * * * *
63534867 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCG
63534931 GA
64 GA
63534933 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
78 14 0.11
79 79 0.65
80 23 0.19
81 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA
ATTAATAACTCGCA
Found at i:63548939 original size:31 final size:31
Alignment explanation
Indices: 63548875--63548939 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
63548865 GTGGGACGAC
* *
63548875 ATAAGACATAAATTACATGGTTTTATATTAT
1 ATAAGACATAAATTACATGGTTTAATATAAT
*
63548906 ATAAGACATAAATTATAT-GTTATAATATAAT
1 ATAAGACATAAATTACATGGTT-TAATATAAT
63548937 ATA
1 ATA
63548940 TATATCATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.40
Consensus pattern (31 bp):
ATAAGACATAAATTACATGGTTTAATATAAT
Found at i:63550101 original size:56 final size:56
Alignment explanation
Indices: 63549961--63550152 Score: 262
Period size: 56 Copynumber: 3.4 Consensus size: 56
63549951 GAAGAATATG
** *
63549961 TGGCATCGATATGTGACTT-TGATATATGTGTTTGAGTAAGACCACGTTTAATA-GT
1 TGGCATCGATATGTGA-TTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
* *
63550016 TGGCATCGTTATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
* * * *
63550072 TAGCATCGATATATGATTCTGATATATGTGTGCAAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
* *
63550128 TGGTATCAATATGTGATTCTGATAT
1 TGGCATCGATATGTGATTCTGATAT
63550153 GTGTTCACGA
Statistics
Matches: 120, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
54 2 0.02
55 45 0.38
56 73 0.61
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.38
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
Found at i:63554843 original size:16 final size:16
Alignment explanation
Indices: 63554824--63554854 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63554814 CTTCTTCACT
63554824 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63554840 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63554855 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63554860 original size:20 final size:20
Alignment explanation
Indices: 63554821--63554860 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63554811 AAACTTCTTC
* *
63554821 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63554841 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63554861 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63555236 original size:55 final size:54
Alignment explanation
Indices: 63555058--63555301 Score: 245
Period size: 55 Copynumber: 4.6 Consensus size: 54
63555048 TTACCATTTC
* * * * *
63555058 CATGACTTGTCATGGTCTTACGTGGTATCC-TG--T-T-GAAACTTACCATTGC
1 CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAACTTACCAATGT
* * *
63555107 CATGTCTCGACATGGTCTTACATGGTATCCTTGCCT-TATG-AACTCACCAATGT
1 CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATA-GAAACTTACCAATGT
* * *
63555160 TATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCGTATAGAAACTTACCAATGT
1 CATGCCTTGACATGGTCTTACATGGTATCC-TTGCC-TATAGAAACTTACCAATGT
* * *
63555215 CATGTCTTGACATGGTCTTACATGATATCCTTGCCTA-AGAAACCTTACCAATTT
1 CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAA-CTTACCAATGT
*
63555269 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CATGCCTTGACATGGTCTTACATGGTATCCTT
63555302 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 26 0.16
50 2 0.01
52 4 0.02
53 42 0.26
54 15 0.09
55 70 0.43
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTATAGAAACTTACCAATGT
Found at i:63559886 original size:48 final size:48
Alignment explanation
Indices: 63559815--63560026 Score: 262
Period size: 48 Copynumber: 4.4 Consensus size: 48
63559805 ATATGAATGT
*
63559815 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* * * ** *
63559863 CAGTGTAAGACCATGTTTAGGACATGGCATCGACCACCTTATAAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
**
63559911 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* * * * * * *
63559959 CAGTGCAAGACCATGTCTGGGACATGGCATCAGCAATAAGATGAAAAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
* *
63560007 TAGTGTAAGACCATGCCTGG
1 CAGTGTAAGACCATGTCTGG
63560027 TGTAATGCCC
Statistics
Matches: 141, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 141 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGC
Found at i:63559982 original size:96 final size:96
Alignment explanation
Indices: 63559815--63559989 Score: 296
Period size: 96 Copynumber: 1.8 Consensus size: 96
63559805 ATATGAATGT
* *
63559815 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAGACCATGTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
63559880 TAGGACATGGCATCGACCACCTTATAAGAGC
66 TAGGACATGGCATCGACCACCTTATAAGAGC
***
63559911 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACCTTATGAGAGCCAGTGCAAGACCATGTC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
*
63559976 TGGGACATGGCATC
66 TAGGACATGGCATC
63559990 AGCAATAAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.27, T:0.20
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGCAAGACCATGTC
TAGGACATGGCATCGACCACCTTATAAGAGC
Found at i:63570073 original size:46 final size:44
Alignment explanation
Indices: 63569975--63570189 Score: 157
Period size: 46 Copynumber: 4.7 Consensus size: 44
63569965 GTGTTGATAC
* * * * * *
63569975 CATGTCCCAAACATGGTCTTACACTGACACTTCTCGTA-GCGGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCATCTC-AAGGCCGATG
*
63570020 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGC-T-CATCTCAAGGCCGATG
* * ** *
63570066 CATGTCCCAAACATGTCTTACACTAGCACTCATCTCAATACCGATAC
1 CATGTCCCAGACATGTCTTACACT-G-GCTCATCTCAAGGCCGAT-G
* *
63570113 CGTGTCCCAGACATGGTCTTACAATGGCTC-TCAT-AATGTGTCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCATC-TCAA-G-G-CCGATG
* *
63570160 CATGTCCCAGACATGTTTTACACTAGCTCA
1 CATGTCCCAGACATGTCTTACACTGGCTCA
63570190 CAATAACCTA
Statistics
Matches: 134, Mismatches: 24, Indels: 22
0.74 0.13 0.12
Matches are distributed among these distances:
44 12 0.09
45 18 0.13
46 61 0.46
47 28 0.21
48 15 0.11
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCATCTCAAGGCCGATG
Found at i:63575325 original size:52 final size:52
Alignment explanation
Indices: 63575269--63575375 Score: 169
Period size: 52 Copynumber: 2.1 Consensus size: 52
63575259 TTCTCTTAGT
* *
63575269 TCTAGGATGCCAAAAAATACTCGAATATCTTCATTAAGACCATTCTCAAACC
1 TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATCCTCAAACC
** *
63575321 TCTAGGATGCCAACGAATACTCAAATATCTTCATTAAGACCATCCTCGAACC
1 TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATCCTCAAACC
63575373 TCT
1 TCT
63575376 TACACATAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.27
Consensus pattern (52 bp):
TCTAGGATGCCAAAAAATACTCAAATATCTTCATTAAGACCATCCTCAAACC
Found at i:63576452 original size:22 final size:22
Alignment explanation
Indices: 63576427--63576469 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
63576417 GCTCGCGTGA
63576427 GAAGGACAACACACCCGTGTGG
1 GAAGGACAACACACCCGTGTGG
* **
63576449 GAAGGGCAACATGCCCGTGTG
1 GAAGGACAACACACCCGTGTG
63576470 ACTAATTTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.26, G:0.35, T:0.12
Consensus pattern (22 bp):
GAAGGACAACACACCCGTGTGG
Found at i:63577779 original size:46 final size:43
Alignment explanation
Indices: 63577673--63577892 Score: 147
Period size: 46 Copynumber: 4.8 Consensus size: 43
63577663 CATATATGTA
* * *
63577673 TCGATGCCATGTTCCAGACATGGTCTTACACTGACACCTCTCATA-G
1 TCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-TCTCTCA-AGG
* * * *
63577719 CCAATGCATATCCCAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 TCGATGCATGTCCCAGACATGTCTTACACTGGC-T-C-TCTCAAGG
* * * *
63577765 TCGATGCATGTCCCAGACATGTTTTTCACTAGCACTCATCTCAATG
1 TCGATGCATGTCCCAGACATGTCTTACACT-G-GCTC-TCTCAAGG
* * * *
63577811 T-GATGTCGTGTCCCAGGCATGGTCTTACGCTGGCTCTCATAATATGG
1 TCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TCA-A-GG
*
63577858 TCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 TCGATGCATGTCCCAGACATGTCTTACACTGGCTC
63577893 ACAATAACCC
Statistics
Matches: 134, Mismatches: 29, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
44 14 0.10
45 23 0.17
46 69 0.51
47 23 0.17
48 5 0.04
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.30
Consensus pattern (43 bp):
TCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCTCAAGG
Found at i:63580904 original size:48 final size:48
Alignment explanation
Indices: 63580820--63581004 Score: 226
Period size: 48 Copynumber: 3.9 Consensus size: 48
63580810 GACATTTGGG
* * *
63580820 TGATATGAGTGCCAGTGTAAGACCGTGTTTGGGACATGGCATCGGCAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * *
63580868 TGATGTGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
* * * *
63580916 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
** * * * *
63580964 CAACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCA
1 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCA
63581005 CTGGCAATTC
Statistics
Matches: 119, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:63582084 original size:21 final size:21
Alignment explanation
Indices: 63582012--63582076 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
63582002 AAGAAGACAT
* *
63582012 ACGGGCATGTCGCCTTTCCAC
1 ACGGGCGTGTCGCCCTTCCAC
* *
63582033 AGGGGCGTGTCGCCCTTCCAT
1 ACGGGCGTGTCGCCCTTCCAC
63582054 ACGGGCGTGTCGCCCTTCCAC
1 ACGGGCGTGTCGCCCTTCCAC
63582075 AC
1 AC
63582077 CTGCGTGTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.22
Consensus pattern (21 bp):
ACGGGCGTGTCGCCCTTCCAC
Found at i:63584127 original size:42 final size:40
Alignment explanation
Indices: 63584068--63584158 Score: 110
Period size: 42 Copynumber: 2.2 Consensus size: 40
63584058 AAATCAAAAG
* * *
63584068 TATTGAAACCTTTAACAAATTATCAATACCTTCCCCTATTTT
1 TATTGATACATTTAACAAAGTATCAATACCTT-CCCTA-TTT
**
63584110 TATTGATACATTTAACAAAGTATTGATACCTTCCCTATTT
1 TATTGATACATTTAACAAAGTATCAATACCTTCCCTATTT
*
63584150 TATCGATAC
1 TATTGATAC
63584159 CCCTACCTGG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 11 0.26
41 5 0.12
42 27 0.63
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (40 bp):
TATTGATACATTTAACAAAGTATCAATACCTTCCCTATTT
Found at i:63586309 original size:23 final size:23
Alignment explanation
Indices: 63586279--63586324 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63586269 TACTTTTTGA
63586279 AACTGTTAGAGATTTTGAGAGTT
1 AACTGTTAGAGATTTTGAGAGTT
63586302 AACTGTTAGAGATTTTGAGAGTT
1 AACTGTTAGAGATTTTGAGAGTT
63586325 TTCATTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.39
Consensus pattern (23 bp):
AACTGTTAGAGATTTTGAGAGTT
Found at i:63588697 original size:15 final size:15
Alignment explanation
Indices: 63588677--63588707 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63588667 AGGCGTGTGT
63588677 CTAGGCCGTGTGAGA
1 CTAGGCCGTGTGAGA
*
63588692 CTAGGCTGTGTGAGA
1 CTAGGCCGTGTGAGA
63588707 C
1 C
63588708 ACATGGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.19, G:0.39, T:0.23
Consensus pattern (15 bp):
CTAGGCCGTGTGAGA
Found at i:63599864 original size:40 final size:40
Alignment explanation
Indices: 63599809--63600059 Score: 312
Period size: 40 Copynumber: 6.3 Consensus size: 40
63599799 ATTTGAATGA
* *
63599809 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
63599849 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
63599889 TATCCGGGTTAAGACCCGACGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
63599929 TATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTT
* * *
63599969 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * * *
63600009 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
63600049 TATCC-GGCTAA
1 TATCCGGGCTAA
63600060 ATTCCGAAGA
Statistics
Matches: 190, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
39 8 0.04
40 179 0.94
41 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:63606088 original size:16 final size:15
Alignment explanation
Indices: 63606067--63606116 Score: 64
Period size: 17 Copynumber: 3.1 Consensus size: 15
63606057 TGAATCCTCC
63606067 TATTTTTTTTTATTCT
1 TATTTTTTTTTATT-T
63606083 TATTTTTATTTTATTT
1 TATTTTT-TTTTATTT
63606099 TATTTCTATTTTTATTT
1 TATTT-T-TTTTTATTT
63606116 T
1 T
63606117 CAATTCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 13 0.42
17 17 0.55
18 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (15 bp):
TATTTTTTTTTATTT
Found at i:63606091 original size:6 final size:6
Alignment explanation
Indices: 63606069--63606116 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
63606059 AATCCTCCTA
* *
63606069 TTTT-T TTTTAT TCTTAT TTTTA- TTTTA- TTTTAT TTCTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
63606114 TTT
1 TTT
63606117 CAATTCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
5 14 0.38
6 23 0.62
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:63606099 original size:22 final size:22
Alignment explanation
Indices: 63606067--63606116 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
63606057 TGAATCCTCC
*
63606067 TATTTTTTTTTA-TTCTTATTTT
1 TATTTTATTTTATTTC-TATTTT
63606089 TATTTTATTTTATTTCTATTTT
1 TATTTTATTTTATTTCTATTTT
63606111 TATTTT
1 TATTTT
63606117 CAATTCAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (22 bp):
TATTTTATTTTATTTCTATTTT
Found at i:63606718 original size:34 final size:34
Alignment explanation
Indices: 63606680--63606747 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
63606670 TATGCATGAT
63606680 TATTTGATTATAGGACCTTAAAGAATCGAGCATG
1 TATTTGATTATAGGACCTTAAAGAATCGAGCATG
63606714 TATTTGATTATAGGACCTTAAAGAATCGAGCATG
1 TATTTGATTATAGGACCTTAAAGAATCGAGCATG
63606748 ATAAGTTGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (34 bp):
TATTTGATTATAGGACCTTAAAGAATCGAGCATG
Found at i:63610546 original size:68 final size:65
Alignment explanation
Indices: 63610328--63610549 Score: 177
Period size: 64 Copynumber: 3.4 Consensus size: 65
63610318 CATAGTTTTG
* ** * * *
63610328 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCATA
1 GCTCTCTTGTACACATGGTATACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCGTA
** * * * * * * *
63610391 GCTCTCTTGTTTACATGGTGTCCTTCACCT-GCAACCACACATGCAACCTAGCTACATCTA-TCT
1 GCTCTCTTGTACACAT-G-GT-ATACACATAG-TATCACCCATGCAACCTAGCTACCTCTATTCT
63610454 CGTA
62 CGTA
*
63610458 GCTC-CATTGT-CTACAAGGTATACACATAGTATCACCCATGCAACCTAGCTACCTCATAATGTC
1 GCTCTC-TTGTAC-ACATGGTATACACATAGTATCACCCATGCAACCTAGCTACCTC-T-AT-TC
63610521 TCGTA
61 TCGTA
63610526 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTATACA
63610550 TCTCGTATTA
Statistics
Matches: 121, Mismatches: 24, Indels: 23
0.72 0.14 0.14
Matches are distributed among these distances:
63 14 0.12
64 28 0.23
65 7 0.06
66 24 0.20
67 20 0.17
68 26 0.21
69 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTATACACATAGTATCACCCATGCAACCTAGCTACCTCTATTCTCGTA
Found at i:63618328 original size:68 final size:64
Alignment explanation
Indices: 63618116--63618335 Score: 225
Period size: 64 Copynumber: 3.4 Consensus size: 64
63618106 CATAATTTTG
* *
63618116 GCTCTCTTGTACACATGGTG-ACACATAGTATCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 GCTCTCTTGT-CACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TCTATTCTCGT
63618177 A
64 A
* * * * * * *
63618178 GCTCTCTTGTTACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATCTA-TCTCG
1 GCTCTCTTGTCACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACATCTATTCTCG
63618242 TA
63 TA
63618244 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATC-T-AT-TCTC
63618309 GTA
62 GTA
*
63618312 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGT-CACATGGTGTACA
63618336 TCCCATTACA
Statistics
Matches: 129, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
61 8 0.06
62 10 0.08
64 29 0.22
65 22 0.17
66 21 0.16
67 10 0.08
68 28 0.22
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCTATTCTCGTA
Found at i:63623005 original size:68 final size:65
Alignment explanation
Indices: 63622799--63623020 Score: 227
Period size: 64 Copynumber: 3.4 Consensus size: 65
63622789 CATAATTTTG
* * *
63622799 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * *
63622862 GCTCTCTTGTTTACATGGTGTCCTTCACCTAGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
63622926 GTA
63 GTA
63622929 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
63622993 CGTA
62 CGTA
* *
63622997 GCACTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
63623021 TCCCGTATTA
Statistics
Matches: 127, Mismatches: 22, Indels: 15
0.77 0.13 0.09
Matches are distributed among these distances:
63 18 0.14
64 28 0.22
65 1 0.01
66 24 0.19
67 28 0.22
68 27 0.21
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:63623042 original size:68 final size:68
Alignment explanation
Indices: 63622897--63623048 Score: 163
Period size: 68 Copynumber: 2.3 Consensus size: 68
63622887 CACCTAGAAC
* * * * *
63622897 CACACATGCAACCTAGCTACATC-T-A--TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAG
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTCTACATGGTATACACACAG
63622958 TAT
66 TAT
*
63622961 CACCCATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTAC-ACATGGTATACATC-C
1 CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGT-CTACATGGTATACA-CAC
*
63623024 CGTAT
64 AGTAT
* *
63623029 TACACATGTGACCTAGCTAC
1 CACACATGCGACCTAGCTAC
63623049 ATACCATCTG
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
64 20 0.28
65 1 0.01
66 1 0.01
68 48 0.67
69 2 0.03
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (68 bp):
CACACATGCGACCTAGCTACCTCATAATGTCTCGTAGCACTCTTGTCTACATGGTATACACACAG
TAT
Found at i:63630172 original size:6 final size:6
Alignment explanation
Indices: 63630145--63630240 Score: 117
Period size: 6 Copynumber: 16.0 Consensus size: 6
63630135 TTGAATCCTC
* *
63630145 TTATTT TT-TTAT TTATTC TTATTT TTA-TT TTA-TT TTATTT TATTTTAT
1 TTATTT TTATT-T TTATTT TTATTT TTATTT TTATTT TTATTT T-TATT-T
*
63630193 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TCATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
63630241 CAATTTTATT
Statistics
Matches: 80, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
5 12 0.15
6 58 0.73
7 8 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTATTT
Found at i:63630193 original size:36 final size:40
Alignment explanation
Indices: 63630150--63630234 Score: 133
Period size: 36 Copynumber: 2.2 Consensus size: 40
63630140 TCCTCTTATT
63630150 TTTTTATTTATTCTTATTTTTA-TTTTA-TTTTA-TTTTA
1 TTTTTATTTATTCTTATTTTTATTTTTATTTTTATTTTTA
*
63630187 -TTTTATTTATTTTTATTTTTATTTTTATTTTTATTTTTA
1 TTTTTATTTATTCTTATTTTTATTTTTATTTTTATTTTTA
63630226 TTTTTATTT
1 TTTTTATTT
63630235 TCATTTCAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
36 20 0.47
37 5 0.12
38 5 0.12
39 5 0.12
40 8 0.19
ACGTcount: A:0.18, C:0.01, G:0.00, T:0.81
Consensus pattern (40 bp):
TTTTTATTTATTCTTATTTTTATTTTTATTTTTATTTTTA
Found at i:63637956 original size:40 final size:40
Alignment explanation
Indices: 63637898--63638088 Score: 174
Period size: 40 Copynumber: 4.8 Consensus size: 40
63637888 ATAACCACAA
* *
63637898 GCACAATTGCCTTGGGGTCTTAACCCAGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCC-GGATATAGCAACTC
* *
63637938 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
63637978 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
63638018 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * *
63638058 GCATAAATGCCTTC-GGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
63638089 CATTCAAATG
Statistics
Matches: 140, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 17 0.12
40 118 0.84
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:63637968 original size:80 final size:79
Alignment explanation
Indices: 63637869--63638087 Score: 203
Period size: 80 Copynumber: 2.8 Consensus size: 79
63637859 ACCCAAGTTT
* * * * * * *
63637869 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTGGGGTCTTAACCCAGG-TATAG
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCC-GGATAAAA
*
63637932 CAACTCGCACAAATGC
65 C-ACTAGCACAAATGC
* * ** *
63637948 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAA-
*
63638013 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * * * *
63638028 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTC-GGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATATAA-CAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATA
63638088 TCATTCAAAT
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
79 27 0.23
80 87 0.75
81 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAAAAC
ACTAGCACAAATGC
Found at i:63638087 original size:39 final size:40
Alignment explanation
Indices: 63637942--63638087 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
63637932 CAACTCGCAC
* * * *
63637942 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
*
63637982 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
63638022 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
63638062 AAATGCCTTC-GGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
63638088 TCATTCAAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
39 16 0.16
40 81 0.80
41 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:63645257 original size:40 final size:40
Alignment explanation
Indices: 63645202--63645393 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
63645192 ATAACCACAA
* *
63645202 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATAGCAACTC
*
63645242 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
63645282 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
63645322 GCATAAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * *
63645362 GCATAAATGCCTTCGAGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
63645394 CATTCAAATG
Statistics
Matches: 140, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 133 0.95
41 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:63648343 original size:21 final size:21
Alignment explanation
Indices: 63648317--63648369 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
63648307 CCTATAGCAT
*
63648317 GGGCGTGTCCGAGGGTCACAC
1 GGGCGTGTCCCAGGGTCACAC
63648338 GGGCGTGTCCCAGGGTCACAC
1 GGGCGTGTCCCAGGGTCACAC
63648359 GGGCGTGTCCC
1 GGGCGTGTCCC
63648370 TTGGACCACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.11, C:0.32, G:0.42, T:0.15
Consensus pattern (21 bp):
GGGCGTGTCCCAGGGTCACAC
Found at i:63650295 original size:71 final size:71
Alignment explanation
Indices: 63650196--63650342 Score: 276
Period size: 71 Copynumber: 2.1 Consensus size: 71
63650186 TTAAAAAATC
*
63650196 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATTACTT
1 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
*
63650261 TTCTAT
66 TCCTAT
63650267 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
1 TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
63650332 TCCTAT
66 TCCTAT
63650338 TTATA
1 TTATA
63650343 GTCTAATAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (71 bp):
TTATAATTCTACAAATACATTACATATTCGTATCTACCTTTATAACTTGGTATATTTAATCACTT
TCCTAT
Found at i:63653137 original size:13 final size:13
Alignment explanation
Indices: 63653119--63653143 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63653109 CCAAGCACAC
63653119 GCCCATGTCCCTG
1 GCCCATGTCCCTG
63653132 GCCCATGTCCCT
1 GCCCATGTCCCT
63653144 TACATATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
GCCCATGTCCCTG
Found at i:63654681 original size:23 final size:24
Alignment explanation
Indices: 63654651--63654703 Score: 92
Period size: 23 Copynumber: 2.3 Consensus size: 24
63654641 ATTTCATGGA
63654651 TTATCATGCAATGAATATCT-AAT
1 TTATCATGCAATGAATATCTAAAT
63654674 TTATCATGCAATGAATATCTAAAT
1 TTATCATGCAATGAATATCTAAAT
63654698 TT-TCAT
1 TTATCAT
63654704 ACACTCAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.42
Consensus pattern (24 bp):
TTATCATGCAATGAATATCTAAAT
Found at i:63657681 original size:42 final size:43
Alignment explanation
Indices: 63657582--63657719 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 43
63657572 TGAGACATCG
* * * * * *
63657582 TGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TTAAATT-TA
1 TGTAAGACCATGTCTGGGACAGAGGCATCAATATTGAATTACA
** * *
63657623 TGAATAAGACCATGTCTGGGACATTGGCATC-GTATCTG-ATTTCA
1 TG--TAAGACCATGTCTGGGACAGAGGCATCAATAT-TGAATTACA
*
63657667 TGTAAGACCTTGTCTGGGACAGAGGCATCAATATTGAATTACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCAATATTGAATTACA
63657710 TGTAAGACCA
1 TGTAAGACCA
63657720 CGTTCGGGAC
Statistics
Matches: 77, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.03
42 27 0.35
43 44 0.57
44 4 0.05
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCAATATTGAATTACA
Found at i:63661543 original size:39 final size:40
Alignment explanation
Indices: 63661498--63661665 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
63661488 CGGGGTTTAG
* * *
63661498 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
63661537 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
63661577 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
63661617 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
63661658 CCGGATAT
1 CCGGATAT
63661666 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:63661648 original size:41 final size:40
Alignment explanation
Indices: 63661521--63661665 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
63661511 CTCGCACAAG
* * * * *
63661521 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
63661561 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
63661601 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
63661642 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
63661666 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:63669597 original size:40 final size:40
Alignment explanation
Indices: 63669514--63669653 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 40
63669504 AATCAAGCAT
** ** * *
63669514 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * * * *
63669552 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
*
63669592 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
*
63669632 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63669654 CATTCGAGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 10 0.12
39 15 0.18
40 59 0.70
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAGC
Found at i:63675641 original size:31 final size:31
Alignment explanation
Indices: 63675587--63675646 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
63675577 TACAAAATAA
* *
63675587 TTATTGAATTATTCAAAATTTTTTATTTAAG
1 TTATCGAATTATTCAAAAGTTTTTATTTAAG
* *
63675618 TTATCGAATTGTTTAAAAGTTTTTATTTA
1 TTATCGAATTATTCAAAAGTTTTTATTTA
63675647 TGTCACTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
TTATCGAATTATTCAAAAGTTTTTATTTAAG
Found at i:63681784 original size:46 final size:46
Alignment explanation
Indices: 63681703--63681851 Score: 162
Period size: 46 Copynumber: 3.2 Consensus size: 46
63681693 ATGTCAATTC
*
63681703 CATGTCCCAGACATGGTCTTACACTGACTATCATCTCG-GAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCGAG-GCCGATG
* *
63681750 CATGTCCCTGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCCGATG
* * *
63681796 CATGTCCCAGACATGTCTTACTCT-AGC-ATTCGTCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGAGGCCGATG
63681842 CCATGTCCCA
1 -CATGTCCCA
63681852 TACTGGTCTT
Statistics
Matches: 88, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
45 1 0.01
46 63 0.72
47 24 0.27
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCCGATG
Done.