Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 191 of 362
Found at i:63693920 original size:28 final size:28
Alignment explanation
Indices: 63693887--63693985 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 28
63693877 ATTGCATGAC
*
63693887 TATGAAAGTGATTGGGCTTGACGGGCAA
1 TATGAAAGTGATTGGGCCTGACGGGCAA
* * *
63693915 TATGAAAATGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGACGGGCAA
* * * * * *
63693943 GATGAATGTGATTGAGCCCGATGGGCCA
1 TATGAAAGTGATTGGGCCTGACGGGCAA
* *
63693971 TATGAATGAGATTGG
1 TATGAAAGTGATTGG
63693986 ACCTAAAGGG
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGACGGGCAA
Found at i:63706759 original size:47 final size:47
Alignment explanation
Indices: 63706705--63706898 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
63706695 TTAGGATTTT
** * **
63706705 ATGTGATGAATGTGAATGTGTATATATAAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63706752 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
63706799 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * **
63706846 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCTGAATGGATA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
63706893 ATGTGA
1 ATGTGA
63706899 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:63706805 original size:22 final size:22
Alignment explanation
Indices: 63706734--63706805 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
63706724 GTATATATAA
63706734 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
63706756 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
63706781 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
63706803 GAT
1 GAT
63706806 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:63706928 original size:48 final size:47
Alignment explanation
Indices: 63706869--63707004 Score: 173
Period size: 50 Copynumber: 2.8 Consensus size: 47
63706859 GAACATGCAT
* *
63706869 ATATGTGGTAAAGCTGAATGGATAATGTGAAATATGTATGGGATATGC
1 ATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTATGAGATATGC
* * *
63706917 ATATGTGGTAAAGCCAAATGGTCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTATGAGATATGC
*
63706967 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTA
63707005 GGCGATGTGC
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
47 1 0.01
48 31 0.41
49 4 0.05
50 39 0.51
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (47 bp):
ATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTATGAGATATGC
Found at i:63707019 original size:50 final size:48
Alignment explanation
Indices: 63706863--63707025 Score: 154
Period size: 50 Copynumber: 3.3 Consensus size: 48
63706853 GAATATGAAC
* *
63706863 ATGCATATATGTGGTAAAGCTGAATGGATAATGTGAAATATGTATGGGAT
1 ATGCGTATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTA-GGGAT
* * *
63706913 ATGC--ATATGTGGTAAAGCCAAATGGTCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGT-AATGTG-AA-ATATGTA-GGGAT
*
63706963 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
1 ATGCGTATATGTGGTAAAGCCGAATGG-TAATGTGAAATATGTAGG-GAT
*
63707011 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
63707026 CCGAACGACC
Statistics
Matches: 94, Mismatches: 9, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
47 2 0.02
48 35 0.37
49 4 0.04
50 47 0.50
51 6 0.06
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGCGTATATGTGGTAAAGCCGAATGGTAATGTGAAATATGTAGGGAT
Found at i:63707259 original size:37 final size:37
Alignment explanation
Indices: 63707151--63707259 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
63707141 GGAAATATAT
*
63707151 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
63707188 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
63707225 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
63707260 CGTCTCAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:63709295 original size:28 final size:29
Alignment explanation
Indices: 63709262--63709336 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 29
63709252 ATTGCATAAC
63709262 TATGAATGTGATTGGGCCT-GACGGGCCA
1 TATGAATGTGATTGGGCCTCGACGGGCCA
* *
63709290 TATGAATGTGATTGGG-CTCGATGGGCCG
1 TATGAATGTGATTGGGCCTCGACGGGCCA
*
63709318 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
63709337 AAATGGGCCA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.05
28 38 0.90
29 2 0.05
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (29 bp):
TATGAATGTGATTGGGCCTCGACGGGCCA
Found at i:63715013 original size:15 final size:15
Alignment explanation
Indices: 63714990--63715021 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
63714980 ATAGAAAAAC
63714990 CCAGAATAAAGAAAT
1 CCAGAATAAAGAAAT
*
63715005 CCAGCATAAAGAAAT
1 CCAGAATAAAGAAAT
63715020 CC
1 CC
63715022 CAGTTAGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.22, G:0.12, T:0.12
Consensus pattern (15 bp):
CCAGAATAAAGAAAT
Found at i:63718689 original size:59 final size:59
Alignment explanation
Indices: 63718606--63718779 Score: 269
Period size: 59 Copynumber: 2.9 Consensus size: 59
63718596 CATAGATAAA
* * *
63718606 ATAATCACATGCCTCTCAATGGGGCTACTCAAAAGCACTCGGACCCTAGCATTTATCAC
1 ATAATCACATGCCTTTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
* *
63718665 ATATTCACATGCCTTTCAACGGGGCTACTCAAAAGCACTCGGACCTTAGCATGTATCAC
1 ATAATCACATGCCTTTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
* *
63718724 ATAATCACATGCCTTTCAACGAGGCTACCCAAAAGCA-TCCGGACCCTAGCATGTAT
1 ATAATCACATGCCTTTCAACGGGGCTACTCAAAAGCACT-CGGACCCTAGCATGTAT
63718780 TAGGTATCAA
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
58 1 0.01
59 104 0.99
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (59 bp):
ATAATCACATGCCTTTCAACGGGGCTACTCAAAAGCACTCGGACCCTAGCATGTATCAC
Found at i:63721858 original size:47 final size:46
Alignment explanation
Indices: 63721790--63721906 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 46
63721780 ACACAAGTTG
* * *
63721790 GTGTAAGA-CATGTCTAGGACATGCACCGACTATAAGATGAT-AGTCA
1 GTGTAAGACCATGTTTAGGACATGCACCAACT-TAAGAT-ATGAGCCA
* * *
63721836 GTGTAAGACCATGTTTGGGACATGGCATCAACTTGAGATATGAGCCA
1 GTGTAAGACCATGTTTAGGACAT-GCACCAACTTAAGATATGAGCCA
*
63721883 GTGTAAGACCGTGTTTAGGACATG
1 GTGTAAGACCATGTTTAGGACATG
63721907 GCATCAACAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
46 11 0.18
47 42 0.70
48 7 0.12
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (46 bp):
GTGTAAGACCATGTTTAGGACATGCACCAACTTAAGATATGAGCCA
Found at i:63725627 original size:40 final size:40
Alignment explanation
Indices: 63725511--63725643 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
63725501 CCTGTGGACC
* * * * *
63725511 TTAAGTCCGGTTATAATTCCAGCACATAGCCTGC-GGACC
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
* * *
63725550 TTAAGTCCGGGGTATAATTCTAGCATATAGCCTGCGGGTCT
1 TTAAG-CCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
* *
63725591 TTAAGCCCGGATATAATTCCAGAATATAGCTTGCGGGTCT
1 TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
*
63725631 TTAAGCCTGGATA
1 TTAAGCCCGGATA
63725644 CACATCAAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
39 5 0.06
40 66 0.84
41 8 0.10
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (40 bp):
TTAAGCCCGGATATAATTCCAGCATATAGCCTGCGGGTCT
Found at i:63728476 original size:26 final size:27
Alignment explanation
Indices: 63728402--63728489 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
63728392 CATATTCATA
* *
63728402 ATTTTACCATAC-AGGGGTATTACGGTC
1 ATTTTACCCTACAAGGGCT-TTACGGTC
*
63728429 ACTTTACCCTACAAGGGCTTTACGGTC
1 ATTTTACCCTACAAGGGCTTTACGGTC
*
63728456 ATTTTACCCT-CAAGGGCTTTATGGTC
1 ATTTTACCCTACAAGGGCTTTACGGTC
*
63728482 TTTTTACC
1 ATTTTACC
63728490 TAATAGGGGT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 22 0.41
27 27 0.50
28 5 0.09
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGCTTTACGGTC
Found at i:63728573 original size:27 final size:27
Alignment explanation
Indices: 63728547--63728854 Score: 149
Period size: 27 Copynumber: 11.3 Consensus size: 27
63728537 ATCTACAAAC
* *
63728547 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
63728574 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTT-TAGTAATTTTGT--AAA-T
*
63728603 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* * **
63728630 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
** ** ***
63728657 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* * **
63728683 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTGTAAAT
* * *
63728710 CTAGGGGTATTTTGGTAATTTT-TACTGAT
1 C-AAGGGTATTTTAGTAATTTTGTA--AAT
* * *
63728739 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* *
63728766 CAATGGTATTTTAGTAATATTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* **** * *
63728793 CGAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
**** *
63728820 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
63728847 CGAGGGTA
1 CAAGGGTA
63728855 AAATGGTAAT
Statistics
Matches: 226, Mismatches: 43, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.02
27 173 0.77
28 28 0.12
29 20 0.09
30 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:63728723 original size:81 final size:82
Alignment explanation
Indices: 63728607--63728758 Score: 218
Period size: 81 Copynumber: 1.9 Consensus size: 82
63728597 GAAAGTCAAG
* ** *
63728607 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTTTACAAATTGAGGGTATTTCGG
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTCGG
63728671 TAATTTCACAAACTAGT
66 TAATTTCACAAACTAGT
** *
63728688 GGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTTACTGATCGAGGGTATTTTG
1 GGTATTTTGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTCG
63728752 GTAATTT
65 GTAATTT
63728759 TGTAAACCAA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.02
81 35 0.56
82 26 0.42
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (82 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTTACAAATCGAGGGTATTTCGG
TAATTTCACAAACTAGT
Found at i:63728745 original size:28 final size:26
Alignment explanation
Indices: 63728605--63728759 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 26
63728595 TAGAAAGTCA
* **
63728605 AGGGTATTTTTGTAATTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTACAAA-CG
*
63728631 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTACAAA-CG
* * *
63728659 AGGGTATTTCGGTAATTTCACAAACT
1 AGGGTATTTTGGTAATTTTACAAACG
*
63728685 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACG
* *
63728712 AGGGGTATTTTGGTAATTTTTACTGATCG
1 A-GGGTATTTTGGTAA-TTTTAC-AAACG
63728741 AGGGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
63728760 GTAAACCAAT
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.03
27 82 0.75
28 22 0.20
29 3 0.03
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACG
Found at i:63728800 original size:82 final size:80
Alignment explanation
Indices: 63728607--63728798 Score: 215
Period size: 82 Copynumber: 2.3 Consensus size: 80
63728597 GAAAGTCAAG
* *
63728607 GGTATTTTTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGT
1 GGTATTTTAGTAA-TTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGT
* *
63728672 AATTTCACAAACTAGT
65 AATTTCACAAACCAAT
* * ** *
63728688 GGTATTTTGGTAATTT-TACAAACTAGGGGTATTTTGGTAATTTTTACTGATCGAGGGTATTTTG
1 GGTATTTTAGTAATTTGTA-AATC-AGGGGTATTTTGGTAA-TTTTACAAATCGAGGGTATTTCG
***
63728752 GTAATTTTGTAAACCAAT
63 GTAATTTCACAAACCAAT
63728770 GGTATTTTAGTAATATTGTAAATCGAGGG
1 GGTATTTTAGTAAT-TTGTAAATC-AGGG
63728799 TAAAACAGTA
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 28 0.30
82 45 0.49
83 9 0.10
84 2 0.02
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (80 bp):
GGTATTTTAGTAATTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTA
ATTTCACAAACCAAT
Found at i:63728855 original size:27 final size:27
Alignment explanation
Indices: 63728788--63728908 Score: 179
Period size: 27 Copynumber: 4.5 Consensus size: 27
63728778 AGTAATATTG
63728788 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
* *
63728815 TAAATCAAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
**
63728842 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
**
63728869 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
63728896 CAAATCGAGGGTA
1 TAAATCGAGGGTA
63728909 CTTTGGTAAT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.26
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTA
Found at i:63728915 original size:27 final size:27
Alignment explanation
Indices: 63728843--63728925 Score: 76
Period size: 27 Copynumber: 3.1 Consensus size: 27
63728833 GTAATTCTGT
*** * *
63728843 AAATCGAGGGTAAAATGGTAATTCTAT
1 AAATCGAGGGTATTTTGGTAATTTTAC
*** *
63728870 AAATCGAGGGTAAAATGGTAATTCTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
*
63728897 AAATCGAGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTATTTTGGTAATTTTAC
63728924 AA
1 AA
63728926 TTTGAGGGCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.30
Consensus pattern (27 bp):
AAATCGAGGGTATTTTGGTAATTTTAC
Found at i:63828442 original size:16 final size:16
Alignment explanation
Indices: 63828421--63828463 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
63828411 TTAAAGCGAT
63828421 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
63828437 AAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCCA
63828453 AAATGCCGAAA
1 AAATGCCGAAA
63828464 TTATGGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.51, C:0.23, G:0.19, T:0.07
Consensus pattern (16 bp):
AAATGCCGAAAAGCCA
Found at i:63829036 original size:20 final size:20
Alignment explanation
Indices: 63828970--63829036 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
63828960 ATTTTGATAA
*
63828970 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63828990 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63829010 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63829030 ACGTGAT
1 ACATGAT
63829037 GTAATCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63829207 original size:24 final size:23
Alignment explanation
Indices: 63829088--63829205 Score: 166
Period size: 23 Copynumber: 5.1 Consensus size: 23
63829078 GGAAGTGAAT
63829088 AAGGGCTTTTGCCCCAGTTATTA
1 AAGGGCTTTTGCCCCAGTTATTA
63829111 AAGGG-TTTGTGCCCCAGTTATTA
1 AAGGGCTTT-TGCCCCAGTTATTA
*
63829134 AAGGGCTTATGCCCCAGTTATTA
1 AAGGGCTTTTGCCCCAGTTATTA
* *
63829157 AAGAGCTTATGCCCCAGTTATTAA
1 AAGGGCTTTTGCCCCAGTTATT-A
* *
63829181 AAGGGATTTTTCCCCAGTTATTA
1 AAGGGCTTTTGCCCCAGTTATTA
63829204 AA
1 AA
63829206 AGAGGCTAGG
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
22 3 0.03
23 62 0.72
24 21 0.24
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.33
Consensus pattern (23 bp):
AAGGGCTTTTGCCCCAGTTATTA
Found at i:63831637 original size:40 final size:40
Alignment explanation
Indices: 63831577--63831787 Score: 302
Period size: 40 Copynumber: 5.3 Consensus size: 40
63831567 CCTTTGGGGT
* *
63831577 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
63831616 ATAGCCCGATTATAGTAACTCGCACAACTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
63831656 TTAGCTCGGTTATAGTAACTCGCACAATTGCCTTCAGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
63831696 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
63831736 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
63831775 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
63831788 CAATCTGAAT
Statistics
Matches: 153, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 17 0.11
40 136 0.89
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:63836639 original size:29 final size:28
Alignment explanation
Indices: 63836598--63836678 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 28
63836588 TTATATAGCC
* *
63836598 CATCGGCCTAATTCACGTTCATATGGCT
1 CATCGGCCCAATTCACATTCATATGGCT
*
63836626 CATCAGGCCCAATTCACATTTATATGGCT
1 CATC-GGCCCAATTCACATTCATATGGCT
* *
63836655 GATCCGGCCCAAATCACATT-ATAT
1 CAT-CGGCCCAATTCACATTCATAT
63836679 TCATGCTCAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 8 0.17
29 37 0.80
30 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (28 bp):
CATCGGCCCAATTCACATTCATATGGCT
Found at i:63838570 original size:117 final size:117
Alignment explanation
Indices: 63838364--63838595 Score: 464
Period size: 117 Copynumber: 2.0 Consensus size: 117
63838354 GTATAGCAAA
63838364 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
1 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
63838429 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCAG
66 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCAG
63838481 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
1 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
63838546 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTC
66 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTC
63838596 GGGGACGAAA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (117 bp):
GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCAG
Found at i:63839786 original size:41 final size:40
Alignment explanation
Indices: 63839741--63839846 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 40
63839731 TGACAACATA
63839741 TCGGCTAAATATGGCACTTAGTGTGAGGTTAGAAAATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGAGGTTAG-AAATAGCT
* ** *
63839782 TCGGCTAAATATGGTACTTAGTGTGCTGTTAGAGATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGAGGTTAGAAATAGCT
** *
63839822 TCGGCTATGTACGGCACTTAGTGTG
1 TCGGCTAAATATGGCACTTAGTGTG
63839847 TGAGATTTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 28 0.49
41 29 0.51
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.32
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGAGGTTAGAAATAGCT
Found at i:63839893 original size:28 final size:27
Alignment explanation
Indices: 63839834--63839934 Score: 130
Period size: 28 Copynumber: 3.7 Consensus size: 27
63839824 GGCTATGTAC
* *
63839834 GGCACTTAGTGTGTGAGATTTGAGTAT
1 GGCACTTAGTGTGCGAGAATTGAGTAT
* *
63839861 GGCACTTAGTGTGCGAAACATTGAGAAT
1 GGCACTTAGTGTGCGAGA-ATTGAGTAT
*
63839889 GGCACTTAGTGTGCGAGATGTTGAGTAT
1 GGCACTTAGTGTGCGAGA-ATTGAGTAT
*
63839917 GGCACTTAGTGTACGAGA
1 GGCACTTAGTGTGCGAGA
63839935 CGTCAAATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 16 0.25
28 48 0.75
ACGTcount: A:0.26, C:0.12, G:0.33, T:0.30
Consensus pattern (27 bp):
GGCACTTAGTGTGCGAGAATTGAGTAT
Found at i:63839945 original size:28 final size:28
Alignment explanation
Indices: 63839887--63839945 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
63839877 AACATTGAGA
* * ** *
63839887 ATGGCACTTAGTGTGCGAGATGTTGAGT
1 ATGGCACTTAGTGTACGAGACGTCAAAT
63839915 ATGGCACTTAGTGTACGAGACGTCAAAT
1 ATGGCACTTAGTGTACGAGACGTCAAAT
63839943 ATG
1 ATG
63839946 CAACAGTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGACGTCAAAT
Found at i:63842912 original size:19 final size:19
Alignment explanation
Indices: 63842888--63842929 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
63842878 ACCAATTTTT
*
63842888 TCATGAGAGAATGATAAAA
1 TCATGAGAGAACGATAAAA
*
63842907 TCATGAGAGAACGATGAAA
1 TCATGAGAGAACGATAAAA
63842926 TCAT
1 TCAT
63842930 ATAAGCTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (19 bp):
TCATGAGAGAACGATAAAA
Found at i:63847144 original size:31 final size:31
Alignment explanation
Indices: 63847096--63847210 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
63847086 TTAGTCTTGA
*
63847096 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
63847126 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
63847157 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
63847188 CATATCACTAGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
63847211 ACTGTAAACG
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:63847281 original size:42 final size:42
Alignment explanation
Indices: 63847234--63847325 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
63847224 TGGCCCTTAG
*
63847234 GCCCATTTCAAGATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGCAA
*
63847276 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGCAA
63847318 GCCCATTT
1 GCCCATTT
63847326 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGCAA
Found at i:63847506 original size:25 final size:25
Alignment explanation
Indices: 63847473--63847542 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
63847463 CTCTTTTAAT
63847473 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
63847498 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
63847523 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
63847543 AGCACTTTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:63848490 original size:27 final size:27
Alignment explanation
Indices: 63848460--63848512 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
63848450 GGGTGTTTTG
63848460 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
63848487 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
63848513 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:63848518 original size:27 final size:27
Alignment explanation
Indices: 63848469--63848603 Score: 85
Period size: 27 Copynumber: 4.9 Consensus size: 27
63848459 GGTAAATCTA
63848469 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
63848496 TAAACCAATGGTATTTCTA-TAATTTT-
1 TAAACCAAGGGTATTTC-AGTAATTTTG
* ** *
63848522 TAGAAAGTCAAGGGTATTTTTGCAATTTTG
1 T--AAA-CCAAGGGTATTTCAGTAATTTTG
** * ** *
63848552 TAAATTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* ** *
63848579 CAAATTAAGGGTATTTCGGTAATTT
1 TAAACCAAGGGTATTTCAGTAATTT
63848604 CACAAACTAG
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.01
27 63 0.72
28 7 0.08
29 16 0.18
30 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:63848608 original size:27 final size:27
Alignment explanation
Indices: 63848531--63848683 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 27
63848521 TTAGAAAGTC
* * **
63848531 AAGGGTATTTTTGCAATTTTGTAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
*
63848558 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * *
63848585 AAGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * *
63848612 -AGTGGTATTTCGATAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAATT
* *
63848639 AGGGGTATTTTTGTAATTTTAC-AATT
1 AAGGGTATTTTGGTAATTTTACAAATT
*
63848665 TAGGAGTATTTTGGTAATT
1 AAGG-GTATTTTGGTAATT
63848684 CTATCCTATA
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
26 7 0.07
27 96 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATT
Found at i:63848710 original size:81 final size:81
Alignment explanation
Indices: 63848557--63848716 Score: 184
Period size: 81 Copynumber: 2.0 Consensus size: 81
63848547 TTTTGTAAAT
* *
63848557 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGGGGTATCT
*
63848622 CGATAATTTTACAAAC
66 CGATAATTTCACAAAC
* * * **
63848638 TAGGGGTATTTTTGTAATTTTAC-AATTTAGGAGTATTTTGGTAA-TTCTATCCTA-TAGGGGTA
1 TAGGGGTATTTTGGTAATTTTACAAATTAAGG-GTATTTCGGTAATTTC-A-CAAACTAGGGGTA
63848700 TCTC-AGTAATTTCACAA
63 TCTCGA-TAATTTCACAA
63848717 TTGAGGGTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
80 11 0.16
81 54 0.81
82 2 0.03
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGGGGTATCT
CGATAATTTCACAAAC
Found at i:63848809 original size:81 final size:81
Alignment explanation
Indices: 63848719--63848885 Score: 230
Period size: 81 Copynumber: 2.1 Consensus size: 81
63848709 TTTCACAATT
* * * *
63848719 GAGGGTAAAACGGTAAATTTGTAAA-CTGAAGG-TAAAATGGTAATTTTGTAAATCGAGTGTAAA
1 GAGGGTAAAACGGTAAATTTGTAAATC-G-AGGATAAAACGGTAATTCTATAAATCGAGGGTAAA
*
63848782 ATGGTAATTCTATAAATC
64 ATGGTAATTCTACAAATC
* * *
63848800 GAGGGTAAAATGGTAATTTTGTAAATCGAGGATGAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 GAGGGTAAAACGGTAAATTTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAAT
63848865 GGTAATTCTACAAATC
66 GGTAATTCTACAAATC
63848881 GAGGG
1 GAGGG
63848886 CATTTCAGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 3 0.04
81 72 0.95
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
GAGGGTAAAACGGTAAATTTGTAAATCGAGGATAAAACGGTAATTCTATAAATCGAGGGTAAAAT
GGTAATTCTACAAATC
Found at i:63848872 original size:27 final size:27
Alignment explanation
Indices: 63848719--63848885 Score: 194
Period size: 27 Copynumber: 6.2 Consensus size: 27
63848709 TTTCACAATT
* *
63848719 GAGGGTAAAACGGTAAATT-TGTAAA-C
1 GAGGGTAAAATGGT-AATTCTATAAATC
* * *
63848745 TGAAGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTATAAATC
*
63848773 GAGTGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
63848800 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
63848827 GAGGATGAAACGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
63848854 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
63848881 GAGGG
1 GAGGG
63848886 CATTTCAGTA
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
26 4 0.03
27 115 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:63848884 original size:54 final size:53
Alignment explanation
Indices: 63848722--63848871 Score: 214
Period size: 54 Copynumber: 2.8 Consensus size: 53
63848712 CACAATTGAG
* *
63848722 GGTAAAACGGTAAATT-TGTAAA-CTGAAGGTAAAATGGTAATTTTGTAAATCGA
1 GGTAAAACGGT-AATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGA
*
63848775 GTGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
1 G-GTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
*
63848829 GGATGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
1 GG-TAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT
63848872 CTACAAATCG
Statistics
Matches: 88, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
53 6 0.07
54 81 0.92
55 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (53 bp):
GGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
Found at i:63852861 original size:40 final size:40
Alignment explanation
Indices: 63852806--63853028 Score: 383
Period size: 40 Copynumber: 5.6 Consensus size: 40
63852796 TATTCGAATG
* *
63852806 ATATCCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
63852846 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
63852886 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
63852926 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
63852966 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
63853006 ATATCCAGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63853029 TACTTGGGTT
Statistics
Matches: 175, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:63858338 original size:37 final size:37
Alignment explanation
Indices: 63858283--63858422 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
63858273 CGAATAGTCC
* * *
63858283 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
63858320 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
63858357 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
63858394 CCACACATAGTCATTGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
63858423 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:63858677 original size:48 final size:48
Alignment explanation
Indices: 63858563--63858903 Score: 556
Period size: 48 Copynumber: 7.0 Consensus size: 48
63858553 ATATACACAC
* *
63858563 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCA-C--ATATACAT
63858614 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
63858662 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
63858710 ATCTCATACATATTTCACACTAGCCATTCGTCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63858758 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63858806 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
63858854 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
63858902 AT
1 AT
63858904 ATTTGTCTTG
Statistics
Matches: 274, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
48 236 0.86
50 1 0.00
51 37 0.14
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:63864784 original size:40 final size:39
Alignment explanation
Indices: 63864700--63864883 Score: 210
Period size: 39 Copynumber: 4.6 Consensus size: 39
63864690 TTGAATGATG
* * * *
63864700 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
63864740 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
63864780 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
63864819 TCCGGGTTAAGTCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
63864859 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
63864884 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 68 0.55
40 47 0.38
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63864901 original size:79 final size:78
Alignment explanation
Indices: 63864701--63864915 Score: 204
Period size: 79 Copynumber: 2.7 Consensus size: 78
63864691 TGAATGATGT
** * * * ** *
63864701 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCAATT
*
63864765 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** *
63864781 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCAATTGTG
*
63864846 CGAGTTACT-ATAA
66 CGAGATACTAAT-A
* * *
63864859 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGGTTAAGTCCGAAGG
63864916 TACGTGATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 47 0.41
79 50 0.43
80 17 0.15
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCAATTGTG
CGAGATACTAATA
Found at i:63867411 original size:40 final size:40
Alignment explanation
Indices: 63867356--63867577 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
63867346 TATTCGAATG
*
63867356 ATATCCGGGCTAAGTCCCGAAGGCATTTCTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
63867396 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
63867436 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
63867476 ATATCTGGGCTATGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
63867516 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
63867556 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
63867578 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 152 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:63882844 original size:7 final size:7
Alignment explanation
Indices: 63882832--63882856 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63882822 ATTTTTTCAA
63882832 TCATCCC
1 TCATCCC
63882839 TCATCCC
1 TCATCCC
63882846 TCATCCC
1 TCATCCC
63882853 TCAT
1 TCAT
63882857 TCATCCCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:63907370 original size:39 final size:39
Alignment explanation
Indices: 63907311--63907422 Score: 161
Period size: 39 Copynumber: 2.9 Consensus size: 39
63907301 TTTATGAGAT
** * *
63907311 TGGAAATATATCCAGACATGAGGTCAGTAGGCTATATGC
1 TGGAAATATATCTGGACATGAGGTCCGCAGGCTATATGC
*
63907350 TGGAAATATATCTGGGCATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCTGGACATGAGGTCCGCAGGCTATATGC
* *
63907389 TGCAAATATATCTGGACTTGAGGTCCGCAGGCTA
1 TGGAAATATATCTGGACATGAGGTCCGCAGGCTA
63907423 CGTGCTAGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (39 bp):
TGGAAATATATCTGGACATGAGGTCCGCAGGCTATATGC
Found at i:63914497 original size:25 final size:25
Alignment explanation
Indices: 63914463--63914512 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
63914453 TGAGTGTTTA
63914463 GGGTCGAATGTGGCATATAATATAT
1 GGGTCGAATGTGGCATATAATATAT
63914488 GGGTCGAATGTGGCATATAATATAT
1 GGGTCGAATGTGGCATATAATATAT
63914513 TAAGGCATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (25 bp):
GGGTCGAATGTGGCATATAATATAT
Found at i:63915413 original size:39 final size:39
Alignment explanation
Indices: 63915331--63915422 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 39
63915321 ATATGAGATT
** *
63915331 GGAAATATATCCGGACATGAGGTCCGCAGGCTTTATGCT
1 GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCC
* *
63915370 GGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCC
1 GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCC
*
63915409 GGAAAAATATCCGG
1 GGAAATATATCCGG
63915423 GTTAAAGACC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GGAAATATATCCGGACATGAGGTCCGCAGGCTACATGCC
Found at i:63917268 original size:42 final size:43
Alignment explanation
Indices: 63917196--63917276 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 43
63917186 TTATGAATTA
*
63917196 TGTGTAAGACCATGTCTGGGACATCAGCATCG-TATTTGATTT
1 TGTGTAAGACCATATCTGGGACATCAGCATCGATATTTGATTT
* * *
63917238 TGTGTAAGACCCTATCTGGTACAAT-GGCATCGATATTTG
1 TGTGTAAGACCATATCTGGGAC-ATCAGCATCGATATTTG
63917277 GTTACATGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 25 0.76
43 8 0.24
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGTAAGACCATATCTGGGACATCAGCATCGATATTTGATTT
Found at i:63936271 original size:14 final size:16
Alignment explanation
Indices: 63936247--63936279 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
63936237 ATTTTCTATG
63936247 TTTATTATGTGTGA-A
1 TTTATTATGTGTGACA
63936262 TTTA-TATGTGTGACA
1 TTTATTATGTGTGACA
63936277 TTT
1 TTT
63936280 TCGTGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGACA
Found at i:63941889 original size:42 final size:43
Alignment explanation
Indices: 63941834--63941934 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 43
63941824 TGACTTATGA
* *
63941834 ATTACATGTAAGACCATGTCTGAGACA-TCGGCATC-GTATTTG
1 ATTACATGTAAGACCATATCTGAGACAGT-GGCATCAATATTTG
* * *
63941876 ATTTCATGTAAGACCCTATCTGGGACAGTGGCATCAATATTTG
1 ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
*
63941919 GTTACATGTAAGACCA
1 ATTACATGTAAGACCA
63941935 CGTATGGGAC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (43 bp):
ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
Found at i:63941943 original size:43 final size:42
Alignment explanation
Indices: 63941834--63941952 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 42
63941824 TGACTTATGA
* * * *
63941834 ATTACATGTAAGACCATGTCTGAGACA-TCGGCATCGTATTTG
1 ATTACATGTAAGACCACGTATGGGACAGT-GGCATCATATTTG
*
63941876 ATTTCATGTAAGACC-C-TATCTGGGACAGTGGCATCAATATTTG
1 ATTACATGTAAGACCACGTA--TGGGACAGTGGCATC-ATATTTG
*
63941919 GTTACATGTAAGACCACGTATGGGAC-GTTGGCAT
1 ATTACATGTAAGACCACGTATGGGACAG-TGGCAT
63941953 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
40 1 0.02
42 27 0.43
43 32 0.51
44 1 0.02
45 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
ATTACATGTAAGACCACGTATGGGACAGTGGCATCATATTTG
Found at i:63942505 original size:23 final size:24
Alignment explanation
Indices: 63942479--63942524 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
63942469 TGCCATGTGA
*
63942479 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
63942502 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
63942525 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:63942971 original size:12 final size:12
Alignment explanation
Indices: 63942954--63942988 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
63942944 CAGAACCACA
63942954 CGGTCGCACACG
1 CGGTCGCACACG
63942966 CGGTCGCACACG
1 CGGTCGCACACG
*
63942978 CGGTTGCACAC
1 CGGTCGCACAC
63942989 ACGGGTGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.17, C:0.40, G:0.31, T:0.11
Consensus pattern (12 bp):
CGGTCGCACACG
Found at i:63948554 original size:15 final size:15
Alignment explanation
Indices: 63948534--63948563 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63948524 GAACCCGAAT
63948534 GCTCAACCCCCTCCA
1 GCTCAACCCCCTCCA
63948549 GCTCAACCCCCTCCA
1 GCTCAACCCCCTCCA
63948564 TGTAAGAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.60, G:0.07, T:0.13
Consensus pattern (15 bp):
GCTCAACCCCCTCCA
Found at i:63953260 original size:45 final size:46
Alignment explanation
Indices: 63953175--63953395 Score: 241
Period size: 46 Copynumber: 4.8 Consensus size: 46
63953165 TATTTGGGCA
*
63953175 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
63953221 TCTGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * * *
63953266 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGATATGTA-ACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
* * *
63953313 TCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * **
63953359 CCCGAGCTCATTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63953396 GCTTACTAAG
Statistics
Matches: 143, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 42 0.29
46 66 0.46
47 34 0.24
48 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:63974322 original size:46 final size:46
Alignment explanation
Indices: 63974272--63974444 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
63974262 TGGTTGAGCA
63974272 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63974318 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
63974363 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63974411 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63974445 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63974428 original size:93 final size:93
Alignment explanation
Indices: 63974269--63974439 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
63974259 GGATGGTTGA
* *
63974269 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63974334 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
63974362 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63974427 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63974440 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:63977427 original size:22 final size:23
Alignment explanation
Indices: 63977380--63977483 Score: 86
Period size: 24 Copynumber: 4.4 Consensus size: 23
63977370 TAGCTCGTAT
* *
63977380 GAGCTTACTGATTCAGCTTGAA-A
1 GAGCTTACTGTTTCAGC-TCAATA
63977403 GAGCTTACTGTTT-AGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
* * *
63977425 GAGCTTCCCGTTTCCAGCTCAATC
1 GAGCTTACTGTTT-CAGCTCAATA
* * *
63977449 GAGCTTAGTGTTATCAGTTCATTA
1 GAGCTTACTGTT-TCAGCTCAATA
63977473 TGAGCTTACTG
1 -GAGCTTACTG
63977484 GCCATGTCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
21 3 0.05
22 15 0.23
23 12 0.19
24 24 0.38
25 10 0.16
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:63978600 original size:20 final size:20
Alignment explanation
Indices: 63978575--63978615 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
63978565 AGGCACACGG
*
63978575 GCGTGTCTAAGGCTGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
63978595 GCGTGTCTAAGGCCGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
63978615 G
1 G
63978616 GCACACGCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.41, T:0.27
Consensus pattern (20 bp):
GCGTGTCTAAGGCCGTGTGA
Found at i:63980977 original size:86 final size:86
Alignment explanation
Indices: 63980831--63980996 Score: 287
Period size: 86 Copynumber: 1.9 Consensus size: 86
63980821 CGAGTGAAAG
* *
63980831 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAGGAATGGGCATTATGAATTCCTCGTGATATCG
1 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
63980896 TTTGGCTTGACTAATACACAA
66 TTTGGCTTGACTAATACACAA
* * *
63980917 ACTCGGATGTACCGAAAATAGCCTTCAGAACCAAGTACGGGCATTATGAATTCCTTGTGATATCG
1 ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
63980982 TTTGGCTTGACTAAT
66 TTTGGCTTGACTAAT
63980997 GCACCTGCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 75 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (86 bp):
ACTCGAATGTACCGAAAATAGCCTTCAGAACCAAGAACGGGCATTATGAATTCCTCGTGATATCG
TTTGGCTTGACTAATACACAA
Found at i:63985084 original size:28 final size:28
Alignment explanation
Indices: 63985052--63985116 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
63985042 TATAGTAAGT
63985052 ACTTAGTGCT-TA-ATAGTCAAACTCGCAC
1 ACTTAGTGCTATACA-A-TCAAACTCGCAC
* *
63985080 ACTTAGTGCTATACAATTAAACTTGCAC
1 ACTTAGTGCTATACAATCAAACTCGCAC
63985108 ACTTAGTGC
1 ACTTAGTGC
63985117 CAATCTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 29 0.88
29 3 0.09
30 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (28 bp):
ACTTAGTGCTATACAATCAAACTCGCAC
Found at i:63990347 original size:20 final size:19
Alignment explanation
Indices: 63990307--63990360 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
63990297 AACTAATATT
63990307 AAACATAATAAAAATAGTAA
1 AAACATAATAAAAATA-TAA
63990327 AAACATAATAATAGAAT-TAA
1 AAACATAATAA-A-AATATAA
*
63990347 ATAC-TAATAAAAAT
1 AAACATAATAAAAAT
63990361 CAACATAGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.10
18 1 0.03
19 6 0.19
20 17 0.55
21 1 0.03
22 3 0.10
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (19 bp):
AAACATAATAAAAATATAA
Found at i:63996475 original size:24 final size:24
Alignment explanation
Indices: 63996446--63996506 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
63996436 AAAGTCTTTT
* *
63996446 AAGAAAATG-ATAAATAAAGATAA
1 AAGAAAATGAAAAAATAAAAATAA
63996469 AA-AGAAATGAAAAAATAAAAATAA
1 AAGA-AAATGAAAAAATAAAAATAA
*
63996493 AAGAAAAAGAAAAA
1 AAGAAAATGAAAAA
63996507 GAAAAACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 1 0.03
23 7 0.22
24 23 0.72
25 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (24 bp):
AAGAAAATGAAAAAATAAAAATAA
Found at i:63996486 original size:18 final size:17
Alignment explanation
Indices: 63996465--63996511 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
63996455 ATAAATAAAG
*
63996465 ATAAAAAGAAATGAAAAA
1 ATAAAAAGAAAAG-AAAA
*
63996483 ATAAAAATAAAAGAAAA
1 ATAAAAAGAAAAGAAAA
*
63996500 AGAAAAAGAAAA
1 ATAAAAAGAAAA
63996512 ACAAATTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.09
Consensus pattern (17 bp):
ATAAAAAGAAAAGAAAA
Found at i:64003315 original size:22 final size:22
Alignment explanation
Indices: 64003287--64003328 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
64003277 TGGTTTTTTA
64003287 TTGATTTCAGGTTTTGCCTCCT
1 TTGATTTCAGGTTTTGCCTCCT
*
64003309 TTGATTTCGGGTTTTGCCTC
1 TTGATTTCAGGTTTTGCCTC
64003329 ATCATCTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.07, C:0.21, G:0.21, T:0.50
Consensus pattern (22 bp):
TTGATTTCAGGTTTTGCCTCCT
Found at i:64004892 original size:23 final size:24
Alignment explanation
Indices: 64004850--64004909 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
64004840 AACCTGCTAG
64004850 AACTAAAA-AAAAAGAAAAATTA-
1 AACTAAAAGAAAAAGAAAAATTAC
*
64004872 AACTAAAAGCAAAAAG-TAAATTAC
1 AACTAAAAG-AAAAAGAAAAATTAC
64004896 AA-TAAAAGTAAAAA
1 AACTAAAAG-AAAAA
64004910 TGGATAAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 8 0.24
23 17 0.52
24 8 0.24
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.15
Consensus pattern (24 bp):
AACTAAAAGAAAAAGAAAAATTAC
Found at i:64008770 original size:11 final size:11
Alignment explanation
Indices: 64008756--64008780 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64008746 AAAATCGTAA
64008756 AAACTAATATT
1 AAACTAATATT
64008767 AAACTAATATT
1 AAACTAATATT
64008778 AAA
1 AAA
64008781 GGAAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:64015065 original size:25 final size:24
Alignment explanation
Indices: 64015037--64015097 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
64015027 AAACAAAAGA
* *
64015037 AAAATTAAAATGTAAAAATTAAATT
1 AAAATAAAAATGTAAAAA-TAAAAT
* * *
64015062 AAAACAAAAATATTAAAATAAAAT
1 AAAATAAAAATGTAAAAATAAAAT
64015086 AAAATAAAAATG
1 AAAATAAAAATG
64015098 GCTAAATTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
24 15 0.52
25 14 0.48
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (24 bp):
AAAATAAAAATGTAAAAATAAAAT
Found at i:64015076 original size:19 final size:18
Alignment explanation
Indices: 64015050--64015089 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
64015040 ATTAAAATGT
*
64015050 AAAAATTAAATTAAAACA
1 AAAAATTAAAATAAAACA
*
64015068 AAAATATTAAAATAAAATA
1 AAAA-ATTAAAATAAAACA
64015087 AAA
1 AAA
64015090 TAAAAATGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATTAAAATAAAACA
Found at i:64020373 original size:18 final size:19
Alignment explanation
Indices: 64020350--64020409 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
64020340 TTTTAATTTT
64020350 AAAAAT-TTAAAAAATATA
1 AAAAATATTAAAAAATATA
*
64020368 AAAAATATTTAAAAATAT-
1 AAAAATATTAAAAAATATA
* *
64020386 TAAAATCATTAAAAAGTATA
1 AAAAAT-ATTAAAAAATATA
64020406 AAAA
1 AAAA
64020410 TCATAATAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
18 11 0.32
19 20 0.59
20 3 0.09
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAATATTAAAAAATATA
Found at i:64020400 original size:10 final size:9
Alignment explanation
Indices: 64020348--64020410 Score: 60
Period size: 9 Copynumber: 6.9 Consensus size: 9
64020338 AATTTTAATT
64020348 TTAAAAAT-
1 TTAAAAATA
64020356 TTAAAAAATA
1 TT-AAAAATA
*
64020366 TAAAAAATA
1 TTAAAAATA
64020375 TTTAAAAATA
1 -TTAAAAATA
64020385 TT-AAAATCA
1 TTAAAAAT-A
64020394 TTAAAAAGTA
1 TTAAAAA-TA
64020404 -TAAAAAT
1 TTAAAAAT
64020411 CATAATAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
8 8 0.17
9 24 0.51
10 14 0.30
11 1 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
TTAAAAATA
Found at i:64025818 original size:37 final size:37
Alignment explanation
Indices: 64025777--64025858 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
64025767 AAATATTTAT
* * *
64025777 TAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
*
64025814 TAATCAATGCTAAAACTTTGAACATGCTTTAATGAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
64025851 TAATCAAT
1 TAATCAAT
64025859 ACTTAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (37 bp):
TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
Found at i:64025930 original size:33 final size:33
Alignment explanation
Indices: 64025893--64025968 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
64025883 TTAAAACTTG
*
64025893 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
64025926 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
64025959 AATTATACAT
1 AATTATACAT
64025969 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:64029133 original size:119 final size:119
Alignment explanation
Indices: 64028988--64029970 Score: 1693
Period size: 121 Copynumber: 8.2 Consensus size: 119
64028978 TTTTCAAGTT
*
64028988 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
64029053 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
* *
64029107 ATACATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
64029172 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAA
*
64029227 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
64029292 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
*
64029346 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
64029411 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
64029465 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
64029530 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
64029586 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
64029651 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
64029707 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
64029772 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
*
64029828 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAATAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
64029893 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
64029948 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
64029971 TAAATATGAT
Statistics
Matches: 847, Mismatches: 11, Indels: 11
0.97 0.01 0.01
Matches are distributed among these distances:
118 2 0.00
119 315 0.37
120 185 0.22
121 343 0.40
122 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (119 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
Found at i:64029786 original size:242 final size:239
Alignment explanation
Indices: 64028988--64029970 Score: 1704
Period size: 239 Copynumber: 4.1 Consensus size: 239
64028978 TTTTCAAGTT
*
64028988 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
64029053 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATACATTTAAT
66 TAATATAAGAATATTAATAATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
*
64029118 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
* *
64029183 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
64029227 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
64029292 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATAATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
*
64029357 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
64029422 TATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
196 TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
64029465 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
64029530 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTT
66 TAATATAAGAATATTAAT--AATTAAGAATTT-ATTAAATTATATAGTTTAATTAAAATATATTT
64029594 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
128 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
* * *
64029659 GAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
193 GAATATTAAT--TATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
64029707 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
64029772 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTT
66 TAATATAAGAATATTAAT--AATTAAGAATTT-ATTAAATTATATAGTTTAATTAAAATATATTT
*
64029836 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAATAAATTAATATAA
128 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
*
64029901 GAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
193 GAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
64029948 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
64029971 TAAATATGAT
Statistics
Matches: 724, Mismatches: 13, Indels: 12
0.97 0.02 0.02
Matches are distributed among these distances:
237 2 0.00
238 102 0.14
239 226 0.31
240 101 0.14
241 69 0.10
242 222 0.31
243 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (239 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATAATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:64029947 original size:18 final size:17
Alignment explanation
Indices: 64029919--64029953 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64029909 ATTATTAAGA
*
64029919 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
64029936 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
64029954 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:64030183 original size:44 final size:45
Alignment explanation
Indices: 64030118--64030208 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
64030108 ACCTCTATTC
* * *
64030118 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
64030162 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
64030207 CA
1 CA
64030209 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:64030210 original size:16 final size:16
Alignment explanation
Indices: 64030189--64030257 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
64030179 GATTAGCTAT
64030189 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64030205 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
64030222 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64030238 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
64030254 TACA
1 TACA
64030258 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64030231 original size:33 final size:32
Alignment explanation
Indices: 64030189--64030257 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
64030179 GATTAGCTAT
64030189 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
64030222 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
64030254 TACA
1 TACA
64030258 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:64032180 original size:17 final size:19
Alignment explanation
Indices: 64032083--64032173 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
64032073 ATAATCTTCA
64032083 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
64032102 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
64032121 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
64032138 ATGAT-TACAATATTAGAT
1 ATGATATGCAATCTTAGAT
64032156 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
64032174 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.23
19 35 0.53
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:64032199 original size:22 final size:22
Alignment explanation
Indices: 64032083--64032196 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 22
64032073 ATAATCTTCA
64032083 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
64032102 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
64032121 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
* *
64032138 ATGAT-TACAATATT---AGAT
1 ATGATATGCAATCTTAGAAGAT
64032156 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
64032178 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
64032197 GATTTAATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 32 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:64032488 original size:18 final size:17
Alignment explanation
Indices: 64032465--64032498 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64032455 TTTCCCTGAT
*
64032465 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
64032483 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
64032499 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:64034334 original size:53 final size:53
Alignment explanation
Indices: 64034153--64034359 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 53
64034143 ATTAGGGTTT
* * * * *
64034153 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAG-TTCATAAGGC
* * * * * *
64034207 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGAT-AAGT-TCATAAGGC
* * * *
64034262 TAA-GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
* * * *
64034315 AAGGATACCACGTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTT
64034360 TAAAAAGAAA
Statistics
Matches: 124, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 38 0.31
55 38 0.31
56 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGATAAGTTCATAAGGC
Found at i:64037053 original size:12 final size:13
Alignment explanation
Indices: 64037036--64037064 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
64037026 ATTCTAAAAT
64037036 ATTAATTAATT-A
1 ATTAATTAATTCA
64037048 ATTAATTAATTCA
1 ATTAATTAATTCA
64037061 ATTA
1 ATTA
64037065 TTTTTCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATTAATTCA
Found at i:64038531 original size:45 final size:45
Alignment explanation
Indices: 64038465--64038553 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
64038455 ATAAATAATT
* *
64038465 TAATCATATATTTAATAAAATTATTATTA-AATATAATTTTAAAAA
1 TAATCATATATTTAATAAAATTATTAATATAAT-TAATATTAAAAA
64038510 TAAT-ATATAATTTAATAAAATTATTAATATAATTAATATTAAAA
1 TAATCATAT-ATTTAATAAAATTATTAATATAATTAATATTAAAA
64038554 TATGAATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 4 0.10
45 33 0.82
46 3 0.08
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (45 bp):
TAATCATATATTTAATAAAATTATTAATATAATTAATATTAAAAA
Found at i:64038537 original size:57 final size:57
Alignment explanation
Indices: 64038415--64038580 Score: 196
Period size: 57 Copynumber: 2.9 Consensus size: 57
64038405 TATTGTTATT
* * *
64038415 AAATT-TTAATAAGATTATTATTAAATATAA-TTTAATAAA-AATAAATAATTTAATC
1 AAATTATTAATAAAATTATTATTAAATATAATTTTAA-AAATAATATATAATTTAATA
*
64038470 ATA-TATTTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAATA
1 AAATTA-TTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAATA
* * *
64038527 AAATTATTAATATAATTAATATTAAAATATGAATTAATAAAAATAATATATAAT
1 AAATTATTAATAAAATTATTATT-AAATAT-AATT-TTAAAAATAATATATAAT
64038581 ATTAGAAAAA
Statistics
Matches: 95, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
54 1 0.01
55 2 0.02
56 27 0.28
57 36 0.38
58 8 0.08
59 4 0.04
60 17 0.18
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (57 bp):
AAATTATTAATAAAATTATTATTAAATATAATTTTAAAAATAATATATAATTTAATA
Found at i:64038552 original size:24 final size:24
Alignment explanation
Indices: 64038480--64038554 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
64038470 ATATATTTAA
* *
64038480 TAAAATTATTATTA-AATATAATTT
1 TAAAATTATTAATATAAT-TAATAT
* * *
64038504 TAAAAATAAT-ATATAATT--TAA
1 TAAAATTATTAATATAATTAATAT
64038525 TAAAATTATTAATATAATTAATAT
1 TAAAATTATTAATATAATTAATAT
64038549 TAAAAT
1 TAAAAT
64038555 ATGAATTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
21 9 0.23
22 8 0.21
23 3 0.08
24 19 0.49
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAAATTATTAATATAATTAATAT
Found at i:64038589 original size:21 final size:21
Alignment explanation
Indices: 64038565--64038620 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
64038555 ATGAATTAAT
64038565 AAAAATAATATATAATATTAG
1 AAAAATAATATATAATATTAG
64038586 AAAAATAATATATAATATTAG
1 AAAAATAATATATAATATTAG
64038607 AAAAATAATATATA
1 AAAAATAATATATA
64038621 GCCTACTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (21 bp):
AAAAATAATATATAATATTAG
Found at i:64054453 original size:34 final size:34
Alignment explanation
Indices: 64054410--64054479 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
64054400 TTCCTTTCAT
64054410 AATTGAATACATAAATACCTTATAAGCAATGCTC
1 AATTGAATACATAAATACCTTATAAGCAATGCTC
64054444 AATTGAATACATAAATACCTTATAAGCAATGCTC
1 AATTGAATACATAAATACCTTATAAGCAATGCTC
64054478 AA
1 AA
64054480 ACCAATTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.29
Consensus pattern (34 bp):
AATTGAATACATAAATACCTTATAAGCAATGCTC
Found at i:64055471 original size:44 final size:43
Alignment explanation
Indices: 64055350--64055501 Score: 189
Period size: 43 Copynumber: 3.5 Consensus size: 43
64055340 GTTCCAGATG
* * *
64055350 TGGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGACA
1 TGGTCTTACACGAAATCACATATCAATGCCAATGTCCCAGACA
* * * * *
64055393 AGGTCTTACACGAACTCATATA-CGATGCCAATGTCCCGGACA
1 TGGTCTTACACGAAATCACATATCAATGCCAATGTCCCAGACA
* **
64055435 TGGTCTTACACGCAAATCACAAATCAATGCCAATGTCCCAGATG
1 TGGTCTTACACG-AAATCACATATCAATGCCAATGTCCCAGACA
64055479 TGGTCTTACACGAAATCACATAT
1 TGGTCTTACACGAAATCACATAT
64055502 TGGGATCCTA
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 28 0.31
43 34 0.38
44 28 0.31
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGAAATCACATATCAATGCCAATGTCCCAGACA
Found at i:64061513 original size:26 final size:26
Alignment explanation
Indices: 64061482--64061589 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
64061472 TGAAATGCCC
*
64061482 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
64061508 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
64061534 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
64061560 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
64061586 ATCA
1 ATCA
64061590 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:64063810 original size:48 final size:48
Alignment explanation
Indices: 64063754--64063944 Score: 213
Period size: 48 Copynumber: 4.0 Consensus size: 48
64063744 CATTAGGGAA
*
64063754 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTTCGAGT
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAGT
* * * ** * *
64063802 TTCATTGATTTGGATTTGGGACATGATATCTACACTTCGGGTGCGTGCT
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAG-T
* * * * * *
64063851 TT-ATTGATTTGGCTTCAGGCCATGATATTGGGACTTCGGGTGCAAGC
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAGT
* * *
64063898 TTCATTGATTTGGCTTTGGGCCATGATATTGGCACTTAAGGTGCGAG
1 TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAG
64063945 ACTCCCGAGT
Statistics
Matches: 116, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
47 2 0.02
48 111 0.96
49 3 0.03
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.36
Consensus pattern (48 bp):
TTCATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTGCGAGT
Found at i:64063941 original size:96 final size:96
Alignment explanation
Indices: 64063757--64063942 Score: 248
Period size: 96 Copynumber: 1.9 Consensus size: 96
64063747 TAGGGAATTC
* * * *
64063757 ATTGATTTGGCTTCGGGCCATGATATCGGCACTTCAGGTTCGAGTTTCATTGATTTGGATTTGGG
1 ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCAGGTGCAAGCTTCATTGATTTGGATTTGGG
**
64063822 ACATGATATCTACACTTCGGGTGCGTGCTTT
66 ACATGATATCTACACTTAAGGTGCGTGCTTT
* * * *
64063853 ATTGATTTGGCTTCAGGCCATGATATTGGGACTTCGGGTGCAAGCTTCATTGATTTGGCTTTGGG
1 ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCAGGTGCAAGCTTCATTGATTTGGATTTGGG
* *
64063918 CCATGATAT-TGGCACTTAAGGTGCG
66 ACATGATATCT-ACACTTAAGGTGCG
64063943 AGACTCCCGA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
95 1 0.01
96 76 0.99
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.36
Consensus pattern (96 bp):
ATTGATTTGGCTTCAGGCCATGATATCGGCACTTCAGGTGCAAGCTTCATTGATTTGGATTTGGG
ACATGATATCTACACTTAAGGTGCGTGCTTT
Found at i:64066128 original size:14 final size:13
Alignment explanation
Indices: 64066099--64066132 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
64066089 TTATGATAGG
*
64066099 AATTTTATATGAA
1 AATTTTATAAGAA
64066112 AATTTTGATAAGAA
1 AATTTT-ATAAGAA
64066126 AATTTTA
1 AATTTTA
64066133 CCGATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (13 bp):
AATTTTATAAGAA
Found at i:64070355 original size:39 final size:39
Alignment explanation
Indices: 64070301--64070376 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
64070291 AGCAGGAAAG
64070301 TTTTGAGAAGCTTAAGAAAGTTCTAACTAAGGCTCTTAT
1 TTTTGAGAAGCTTAAGAAAGTTCTAACTAAGGCTCTTAT
64070340 TTTTGAGAAGCTTAAGAAAGTTCTAACTAAGGCTCTT
1 TTTTGAGAAGCTTAAGAAAGTTCTAACTAAGGCTCTT
64070377 GTCTTGATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (39 bp):
TTTTGAGAAGCTTAAGAAAGTTCTAACTAAGGCTCTTAT
Found at i:64077743 original size:13 final size:13
Alignment explanation
Indices: 64077725--64077749 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64077715 GAGTAATCGT
64077725 ACACGGGCGTGTC
1 ACACGGGCGTGTC
64077738 ACACGGGCGTGT
1 ACACGGGCGTGT
64077750 TCCTGCCGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:64094016 original size:46 final size:48
Alignment explanation
Indices: 64093867--64094182 Score: 221
Period size: 46 Copynumber: 6.7 Consensus size: 48
64093857 TTATTTGTGT
* * *
64093867 GCCAGTGTAAGA-CATGTCTGGGACATGCATCAGCCAC-ATCATG-AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * * * * **
64093913 GCTAGTGTAAGACCATGTCTAGGACGTGGCATCGACATTGAGA-CAAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
*
64093961 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
*
64094007 GCCAGTGTAAGA-CATGTCTGAGACATGCATCGG-CTACGAGATGT---
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* * * * *
64094051 GTCAGTGTAAGACCATGTTTGGGACATGGCATTGGCAC-GGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-AGA
** * * *
64094101 GTGAGTGTAAGACCATGTCTGGGACATGACATC-GACT--TGATGGATGA
1 GCCAGTGTAAGACCATGTCTGGGACATG-CATCGGCCTCGAGATGTA-GA
* *
64094148 GCTAGTGTAAGACCATATCTGGGACATGGCATCGG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG
64094183 TATTACACCC
Statistics
Matches: 216, Mismatches: 35, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
44 11 0.05
45 14 0.06
46 76 0.35
47 58 0.27
48 26 0.12
49 3 0.01
50 28 0.13
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:64109406 original size:30 final size:30
Alignment explanation
Indices: 64109348--64109408 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64109338 TTCCCGAGCC
*
64109348 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
* * * *
64109378 TAGGGGCAAAATTATAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTATAAATATGCAAAAGTT
64109408 T
1 T
64109409 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTATAAATATGCAAAAGTT
Found at i:64110143 original size:68 final size:64
Alignment explanation
Indices: 64110033--64110285 Score: 230
Period size: 68 Copynumber: 3.9 Consensus size: 64
64110023 ATACAGATGG
** * * * *
64110033 TATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA
64110097 TTA
63 -TA
* *
64110100 TGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTACGAGAT
64110164 A
64 A
* * *
64110165 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGCTACGA
1 TATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGCTACGA
64110228 GATA
61 GATA
* * *
64110232 AAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
64110286 CAAACTATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 34 0.22
68 49 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:64126757 original size:13 final size:13
Alignment explanation
Indices: 64126739--64126763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64126729 CCAAGCACAC
64126739 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
64126752 GCCCGTGTCCCT
1 GCCCGTGTCCCT
64126764 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:64133592 original size:47 final size:47
Alignment explanation
Indices: 64133523--64133617 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
64133513 TGATATAAAC
*
64133523 TTTGAGAGCATCTCTTCAAGATTCAGCTTCTTTTCCTGTTGGTAGGG
1 TTTGAGAGCATCTCTTCAAGATTCAGCTTCTTTTCCTATTGGTAGGG
* *
64133570 TTTGAGAGCATCTTTTCAAGATTCAGCTTCTTTTTCTATTGGTAGGG
1 TTTGAGAGCATCTCTTCAAGATTCAGCTTCTTTTCCTATTGGTAGGG
64133617 T
1 T
64133618 GGTTGTTGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.18, C:0.17, G:0.22, T:0.43
Consensus pattern (47 bp):
TTTGAGAGCATCTCTTCAAGATTCAGCTTCTTTTCCTATTGGTAGGG
Found at i:64135623 original size:14 final size:13
Alignment explanation
Indices: 64135600--64135632 Score: 57
Period size: 14 Copynumber: 2.5 Consensus size: 13
64135590 GGGATATCAA
64135600 AACAAGAATTAAG
1 AACAAGAATTAAG
64135613 AACACAGAATTAAG
1 AACA-AGAATTAAG
64135627 AACAAG
1 AACAAG
64135633 TTAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 13 0.68
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (13 bp):
AACAAGAATTAAG
Found at i:64136111 original size:20 final size:21
Alignment explanation
Indices: 64136067--64136113 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
64136057 TTATTTCGTA
*
64136067 CTTTGGCCCATTTTCTCCGTT
1 CTTTGGCCCAGTTTCTCCGTT
64136088 -TTTGGCCC-GTTTCT-CGTT
1 CTTTGGCCCAGTTTCTCCGTT
64136106 CCTTTGGC
1 -CTTTGGC
64136114 TCTCCTATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 4 0.17
19 5 0.22
20 14 0.61
ACGTcount: A:0.02, C:0.32, G:0.19, T:0.47
Consensus pattern (21 bp):
CTTTGGCCCAGTTTCTCCGTT
Found at i:64136558 original size:43 final size:43
Alignment explanation
Indices: 64136483--64136593 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
64136473 TTCAACGAAC
* * * **
64136483 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAAGTGTA
1 TCGCACACTAAGTGCCAATTTATTAGTCGAAGCTATAAGTGTA
* * *
64136526 TTGCAGACTAAGTGCCAATTTATTAGTCGAAGCTATAATTGTA
1 TCGCACACTAAGTGCCAATTTATTAGTCGAAGCTATAAGTGTA
* *
64136569 TCGCACACTTAGTGCCATTTTATTA
1 TCGCACACTAAGTGCCAATTTATTA
64136594 AACCAAACTT
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (43 bp):
TCGCACACTAAGTGCCAATTTATTAGTCGAAGCTATAAGTGTA
Found at i:64137300 original size:19 final size:19
Alignment explanation
Indices: 64137276--64137313 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
64137266 CAACAAGTTC
64137276 TCATTAATGTCGAATCACA
1 TCATTAATGTCGAATCACA
64137295 TCATTAATGTCGAATCACA
1 TCATTAATGTCGAATCACA
64137314 AAATACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
TCATTAATGTCGAATCACA
Found at i:64143027 original size:43 final size:43
Alignment explanation
Indices: 64142963--64143080 Score: 175
Period size: 43 Copynumber: 2.7 Consensus size: 43
64142953 TTCAACGAAC
**
64142963 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCCATTAATTAACCGAAGCTATAATTGTA
* *
64143006 TCGCACACTTAGTGCCCATTAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCCATTAATTAACCGAAGCTATAATTGTA
64143049 TCGCACACTTAGTG-CCATTATATTAAACCGAA
1 TCGCACACTTAGTGCCCATTA-ATT-AACCGAA
64143081 CTTATATCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 6 0.09
43 56 0.84
44 5 0.07
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.31
Consensus pattern (43 bp):
TCGCACACTTAGTGCCCATTAATTAACCGAAGCTATAATTGTA
Found at i:64151968 original size:40 final size:40
Alignment explanation
Indices: 64151921--64152142 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
64151911 CTACTCGCTT
* *
64151921 AAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCAC
*
64151961 AATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
64152001 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCACAC
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
64152041 AAATGCCTTCGGGACTTAGCTCGGGTTTAGTAACTCGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * **
64152081 AGATGCCTT-GGGACTTAGCCCGGA-TTAGTCACTAGTGC
1 AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
*
64152119 AGATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
64152143 TTTTCATCCA
Statistics
Matches: 161, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 18 0.11
39 27 0.17
40 114 0.71
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:64154804 original size:27 final size:27
Alignment explanation
Indices: 64154774--64154919 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
64154764 TACTGAAATG
*
64154774 CCCTCGATTTGTAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
64154801 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
64154828 CCCTCGAATTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
**
64154855 CCCTCGATTTATAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * ***
64154882 CCCTTGATTTACAGAATTATTATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
64154909 CCCTCGATTTA
1 CCCTCGATTTA
64154920 CAAAATTTCT
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:64154947 original size:54 final size:54
Alignment explanation
Indices: 64154850--64154954 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
64154840 AGAATTACCG
* * *** * *
64154850 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTATTA
1 TTTTACCCTCGATTTACAAAATTACTAAAATACCATTGATTTACAAAATTATTA
* *
64154904 TTTTACCCTCGATTTACAAAATTTCTAAAATACCATTGGTTTACAAAATTA
1 TTTTACCCTCGATTTACAAAATTACTAAAATACCATTGATTTACAAAATTA
64154955 CCAAAATACC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (54 bp):
TTTTACCCTCGATTTACAAAATTACTAAAATACCATTGATTTACAAAATTATTA
Found at i:64155044 original size:54 final size:54
Alignment explanation
Indices: 64154921--64155074 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 54
64154911 CTCGATTTAC
* * * **
64154921 AAAATTTCTAAAATACCATTGGTTTACAAAATTACCAAAATACC-CTGGTTTGT
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTGT
64154974 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTG-
1 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTGT
* **
64155027 AGAAATTACCGAAATACC-CTCAATTTGTAAAATTACCAAAATACCACT
1 A-AAATTACCAAAATACCACT-GGTTTGTAAAATTACCAAAATACCACT
64155075 AATTTACAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
53 42 0.47
54 48 0.53
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCACTGGTTTGT
Found at i:64155087 original size:54 final size:53
Alignment explanation
Indices: 64154948--64155156 Score: 199
Period size: 54 Copynumber: 3.9 Consensus size: 53
64154938 ATTGGTTTAC
** * **
64154948 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCACTGGTTTACAAAATTACCGAAATACC-CTAATTTGT
*
64155001 AAAATTACCAAAATACCACTGGTTTGA-GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCACTGGTTT-ACAAAATTACCGAAATACCCT-AATTTGT
** ** * *
64155055 AAAATTACCAAAATACCACTAATTTACAAAATTACATAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCACTGGTTTACAAAATTACCGAAATACCC-T-AATTTGT
* * *
64155110 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 -AAAATTACCA-AAATACCACTGGTTTACAAAATTACCGAAATACCCT
64155157 TGGTTTGTAG
Statistics
Matches: 130, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
53 20 0.15
54 65 0.50
55 8 0.06
56 37 0.28
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (53 bp):
AAAATTACCAAAATACCACTGGTTTACAAAATTACCGAAATACCCTAATTTGT
Found at i:64155088 original size:81 final size:80
Alignment explanation
Indices: 64154915--64155098 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 80
64154905 TTTACCCTCG
* * * **
64154915 ATTTACAAAATTTCTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTGGTTTGTAAAATT
1 ATTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAATT
*
64154980 ACCAAAATACCACTG
66 ACCAAAATACCACTA
* ** * *
64154995 GTTTGTAAAATTACCAAAATACCACTGGTTTGA-GAAATTACCGAAATACCCTCAATTTGTAAAA
1 ATTTACAAAATTACCAAAATACCACTGGTTT-ACAAAATTACCAAAATACCCT-AATTTGTAAAA
64155059 TTACCAAAATACCACTA
64 TTACCAAAATACCACTA
64155076 ATTTACAAAATTA-CATAAATACC
1 ATTTACAAAATTACCA-AAATACC
64155099 CTTGACTTTC
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
80 44 0.51
81 43 0.49
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (80 bp):
ATTTACAAAATTACCAAAATACCACTGGTTTACAAAATTACCAAAATACCCTAATTTGTAAAATT
ACCAAAATACCACTA
Found at i:64155150 original size:27 final size:27
Alignment explanation
Indices: 64154916--64155162 Score: 171
Period size: 27 Copynumber: 9.1 Consensus size: 27
64154906 TTACCCTCGA
* *
64154916 TTTACAAAATTTCTAAAATACCATTGG
1 TTTACAAAATTACCAAAATACCATTGG
*
64154943 TTTACAAAATTACCAAAATACC-CTGG
1 TTTACAAAATTACCAAAATACCATTGG
** *
64154969 TTTGTAAAATTACCAAAATACCACTGG
1 TTTACAAAATTACCAAAATACCATTGG
** *
64154996 TTTGTAAAATTACCAAAATACCACTGG
1 TTTACAAAATTACCAAAATACCATTGG
* * * ***
64155023 TTTGA-GAAATTACCGAAATACCCTCAA
1 TTT-ACAAAATTACCAAAATACCATTGG
** * **
64155050 TTTGTAAAATTACCAAAATACCACTAA
1 TTTACAAAATTACCAAAATACCATTGG
* *
64155077 TTTACAAAATTA-CATAAATACCCTTGAC
1 TTTACAAAATTACCA-AAATACCATTG-G
*
64155105 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCATTGG
** *
64155133 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCATTGG
64155160 TTT
1 TTT
64155163 GTAGATTTAC
Statistics
Matches: 180, Mismatches: 31, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
26 25 0.14
27 129 0.72
28 7 0.04
29 19 0.11
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCATTGG
Found at i:64155280 original size:27 final size:27
Alignment explanation
Indices: 64155203--64155280 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
64155193 AAATGACAAA
* *
64155203 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
64155230 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
64155257 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
64155281 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:64156473 original size:25 final size:25
Alignment explanation
Indices: 64156441--64156488 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
64156431 TTATAATATG
* *
64156441 AAAATGACCGTTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
64156466 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
64156489 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:64156539 original size:9 final size:9
Alignment explanation
Indices: 64156527--64156583 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
64156517 TTTGATAAAC
64156527 ATGATATGT
1 ATGATATGT
*
64156536 ATGATATGCAC
1 ATGATATG--T
*
64156547 ATGACATGT
1 ATGATATGT
*
64156556 ATGATATGCAC
1 ATGATATG--T
64156567 ATGATATGT
1 ATGATATGT
64156576 ATGATATG
1 ATGATATG
64156584 CATATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:64156550 original size:20 final size:20
Alignment explanation
Indices: 64156525--64156595 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
64156515 ATTTTGATAA
64156525 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64156545 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
64156565 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
64156585 ATATGAGATGT
1 ACATGATATGT
64156596 TCGTAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64156721 original size:25 final size:25
Alignment explanation
Indices: 64156642--64156832 Score: 293
Period size: 25 Copynumber: 7.8 Consensus size: 25
64156632 AGGAAGTGCA
64156642 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
64156665 AAAGGGCTTATGCCCCAGTTAT--T
1 AAAGGGCTTATGCCCCAGTTATGAT
64156688 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
64156713 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
64156738 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
64156763 GAAGGGCTTATGCCCCAGCTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
64156788 AAAGGGCTTATGCCCCAGTTAT-AA
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
64156812 AAAGGGCTTTTGCCCTAGTTA
1 AAAGGGCTTATGCCCCAGTTA
64156833 CTAAAAGAGG
Statistics
Matches: 159, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
23 45 0.28
24 20 0.13
25 94 0.59
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:64157107 original size:31 final size:31
Alignment explanation
Indices: 64157053--64157116 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
64157043 GTTTACAATT
* *
64157053 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGACCAGTAATATGAAAAATGA
* **
64157084 AAAGGCTTCGGACTAGTGTTATGAAAAATGA
1 AAAGGCTTCGGACCAGTAATATGAAAAATGA
64157115 AA
1 AA
64157117 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGACCAGTAATATGAAAAATGA
Done.