Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 192 of 362
Found at i:64160724 original size:6 final size:6
Alignment explanation
Indices: 64160703--64160737 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
64160693 TCCCAGAACT
* *
64160703 AGAATC AAAATG AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT
64160738 TAGGTGACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:64160736 original size:18 final size:18
Alignment explanation
Indices: 64160703--64160793 Score: 60
Period size: 19 Copynumber: 4.9 Consensus size: 18
64160693 TCCCAGAACT
*
64160703 AGAATCAAAATGAGAATC
1 AGAATCAAAATCAGAATC
* *
64160721 AGAATCAGAATCAGAATT
1 AGAATCAAAATCAGAATC
* *
64160739 AG-GTGACAAAATTAGAATC
1 AGAAT--CAAAATCAGAATC
* **
64160758 AGAATTAGTATCAGGTAA-C
1 AGAATCAAAATCA-G-AATC
64160777 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
64160794 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 15, Indels: 12
0.66 0.19 0.15
Matches are distributed among these distances:
17 3 0.06
18 22 0.42
19 24 0.46
20 3 0.06
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.21
Consensus pattern (18 bp):
AGAATCAAAATCAGAATC
Found at i:64160765 original size:12 final size:12
Alignment explanation
Indices: 64160696--64160771 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
64160686 GAAAAATTCC
*
64160696 CAGAACTAGAAT
1 CAGAATTAGAAT
* *
64160708 CAAAATGAGAAT
1 CAGAATTAGAAT
*
64160720 CAGAATCAGAAT
1 CAGAATTAGAAT
*
64160732 CAGAATTAG-GT
1 CAGAATTAGAAT
*
64160743 GACAAAATTAGAAT
1 --CAGAATTAGAAT
*
64160757 CAGAATTAGTAT
1 CAGAATTAGAAT
64160769 CAG
1 CAG
64160772 GTAACAGAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
11 1 0.02
12 40 0.80
13 8 0.16
14 1 0.02
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (12 bp):
CAGAATTAGAAT
Found at i:64160789 original size:31 final size:31
Alignment explanation
Indices: 64160715--64160793 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
64160705 AATCAAAATG
* *
64160715 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * * *
64160746 AAAATTAGAATCAGAATTAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
64160777 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
64160794 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.49, C:0.11, G:0.18, T:0.22
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:64161057 original size:27 final size:26
Alignment explanation
Indices: 64161009--64161060 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64160999 GCGAGGCTGG
*
64161009 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
64161035 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
64161061 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64161326 original size:27 final size:27
Alignment explanation
Indices: 64161296--64161705 Score: 469
Period size: 27 Copynumber: 15.2 Consensus size: 27
64161286 AACACCATAG
* *
64161296 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
64161323 GGGTAAAACGATAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
64161350 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
64161377 GGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
64161404 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
64161431 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
64161458 GGGTAAAATGATAATTTTGTAAATCAA
1 GGGTAAAATGGTAATTCTGTAAATCGA
**
64161485 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
***
64161512 GGGTAAAACAATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
64161539 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
** *
64161566 GGGTAAAACAGTAATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* *
64161593 GGTTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
* * *
64161620 GGGTAAAATAGTGATTCTGTAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*
64161647 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
*** * **
64161674 GGGTACTTTGGTAATTTTACAAATCGA
1 GGGTAAAATGGTAATTCTGTAAATCGA
64161701 GGGTA
1 GGGTA
64161706 TTTCAGTAAT
Statistics
Matches: 329, Mismatches: 54, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 329 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTGTAAATCGA
Found at i:64161714 original size:27 final size:27
Alignment explanation
Indices: 64161657--64161717 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
64161647 GGGTAAAATG
* * *
64161657 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTACAAATCGAGGGTACTTTA
64161684 GTAATTTTACAAATCGAGGGTA-TTTCA
1 GTAATTTTACAAATCGAGGGTACTTT-A
64161711 GTAATTT
1 GTAATTT
64161718 GGTAAACTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTACTTTA
Found at i:64167991 original size:14 final size:14
Alignment explanation
Indices: 64167972--64167998 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64167962 TTTTTTTCAT
64167972 TTTCTCTTCTTCTA
1 TTTCTCTTCTTCTA
64167986 TTTCTCTTCTTCT
1 TTTCTCTTCTTCT
64167999 TGTTTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTCTCTTCTTCTA
Found at i:64169523 original size:60 final size:59
Alignment explanation
Indices: 64169447--64169583 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
64169437 AACTATGTTA
* * *
64169447 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTGCGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* *
64169507 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAAGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
*
64169567 ATACGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
64169584 GTTAACACTG
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 51 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:64170713 original size:42 final size:42
Alignment explanation
Indices: 64170613--64170717 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 42
64170603 CTGAGATATC
* *
64170613 GTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGATATTTAT
1 GTGTAAGACCATGTCTGGGACACAGGCATCGATTGA-ATTTAT
*
64170656 GTATAAGACCATGTCTGGGACATCA-GCATCGTATCTG-ATTT-T
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAATTTAT
*
64170698 GTGTAAGACCCTGTCTGGGA
1 GTGTAAGACCATGTCTGGGA
64170718 TTAAAACATC
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
42 19 0.35
43 29 0.54
44 4 0.07
45 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGATTGAATTTAT
Found at i:64179147 original size:43 final size:42
Alignment explanation
Indices: 64179011--64179167 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
64179001 TGTGTTTTTG
*
64179011 TGTAAGACCATGTTTGGGACATTGGCATCGACT-TGTGATTTACG
1 TGTAAGACCATGTTTGGGACATTGGCATCGA-TAT-TGA-TTACA
* * *
64179055 TGTAAGACCATGTCTGGGACATTGACATCG-TATTTGATTTCA
1 TGTAAGACCATGTTTGGGACATTGGCATCGATA-TTGATTACA
* * *
64179097 TGTAAGACCCTGTTTGGGACAGTGGCGTCGATATTCGATTACA
1 TGTAAGACCATGTTTGGGACATTGGCATCGATATT-GATTACA
* * **
64179140 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCATGTTTGGGACATTGGCAT
64179168 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 31 0.34
43 32 0.35
44 29 0.32
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTTTGGGACATTGGCATCGATATTGATTACA
Found at i:64179534 original size:64 final size:64
Alignment explanation
Indices: 64179461--64179590 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
64179451 CTTATATGTG
64179461 TTGTTGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTTGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
64179525 TTGTTGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
1 TTGTTGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
64179589 TT
1 TT
64179591 CAACTGTTTT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.18, C:0.08, G:0.23, T:0.51
Consensus pattern (64 bp):
TTGTTGTATGAGTTTATTTGTATATGGCTTACTAAGCTTTTGGAAAGCTTACTTTGTGTGTGTT
Found at i:64212063 original size:25 final size:25
Alignment explanation
Indices: 64212029--64212078 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64212019 GACTAGGGTT
64212029 TGGTAGAATATTGTAACATCCCAAA
1 TGGTAGAATATTGTAACATCCCAAA
64212054 TGGTAGAATATTGTAACATCCCAAA
1 TGGTAGAATATTGTAACATCCCAAA
64212079 CCCGGCCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (25 bp):
TGGTAGAATATTGTAACATCCCAAA
Found at i:64226108 original size:21 final size:21
Alignment explanation
Indices: 64226067--64226108 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
64226057 TTGACTAAAC
*
64226067 TGTAACACCCTTCACCCGTAT
1 TGTAACACCATTCACCCGTAT
*
64226088 TGTAACACTCATT-ACCTGTAT
1 TGTAACAC-CATTCACCCGTAT
64226109 CTGACATCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (21 bp):
TGTAACACCATTCACCCGTAT
Found at i:64228267 original size:40 final size:39
Alignment explanation
Indices: 64228202--64228287 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
64228192 TATATAAATA
** *
64228202 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCAACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAATGCAA-TTT
* * * *
64228242 TAGCCGAAGCTATTTCGAACCGCACACTAAATGCCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAATGCAATTT
64228281 TAGCCGA
1 TAGCCGA
64228288 TAAGTCGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 10 0.26
40 29 0.74
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAATGCAATTT
Found at i:64236182 original size:37 final size:37
Alignment explanation
Indices: 64236123--64236260 Score: 213
Period size: 37 Copynumber: 3.7 Consensus size: 37
64236113 AGCTCAGACG
* * *
64236123 AAATCTCCACACGAAGTTATCGGGTCTTAACCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
64236160 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
64236197 TACTCTCCGCACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
64236234 TAATCTCCACACGTAGTCATCGGGTCT
1 AAATCTCCACACGTAGTCATCGGGTCT
64236261 CACCTGGAAT
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:64236603 original size:47 final size:47
Alignment explanation
Indices: 64236499--64236762 Score: 375
Period size: 47 Copynumber: 5.6 Consensus size: 47
64236489 GCTTTACCAT
* *
64236499 ATATATGCATGTTCATATTCACCACATTGCCCATTTTCGGCCTTATCAC
1 ATATATGCATGTTCACATTCACCACATTGGCCA--TTCGGCCTTATCAC
* * *
64236548 ACATATGCATGCTCACATTCACCACATTGTCCATTCGGCCTTATCAC
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCAC
* *
64236595 ATATATGCATGTTCACATTCATCACATAGGCCATTCGGCCTTATCAC
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCAC
*
64236642 ATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
64236689 ACATATGCATGCTCACATTCAACACATTGGCCATTCGGCCTTATCAC
1 ATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCAC
* ** *
64236736 ATATATACACATTCACATTCATCACAT
1 ATATATGCATGTTCACATTCACCACAT
64236763 AAAATCCTAA
Statistics
Matches: 193, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 164 0.85
49 29 0.15
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
ATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCAC
Found at i:64236723 original size:141 final size:142
Alignment explanation
Indices: 64236499--64236763 Score: 460
Period size: 141 Copynumber: 1.9 Consensus size: 142
64236489 GCTTTACCAT
64236499 ATATATGCATGTTCATATTCACCACATTGCCCATTTTCGGCCTTATCACACATATGCATGCTCAC
1 ATATATGCATGTTCATATTCACCACATTGCCCA-TTTCGGCCTTATCACACATATGCATGCTCAC
* * * **
64236564 ATTCACCACATTGTCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCAT
65 ATTCAACACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATAGGCCAT
64236629 TCGGCCTTATCAC
130 TCGGCCTTATCAC
*
64236642 ATATATGCATGTTCATATTCACCACATTGGCCA-TTCGGCCTTATCACACATATGCATGCTCACA
1 ATATATGCATGTTCATATTCACCACATTGCCCATTTCGGCCTTATCACACATATGCATGCTCACA
64236706 TTCAACACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATA
66 TTCAACACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATA
64236764 AAATCCTAAA
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
141 84 0.72
143 32 0.28
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (142 bp):
ATATATGCATGTTCATATTCACCACATTGCCCATTTCGGCCTTATCACACATATGCATGCTCACA
TTCAACACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATAGGCCATT
CGGCCTTATCAC
Found at i:64253024 original size:42 final size:44
Alignment explanation
Indices: 64252978--64253073 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 44
64252968 TCTCGAATAG
*
64252978 GGTCTTACACA-AAATCA-AA-TAAGATGCCAATATCCCAAACTT
1 GGTCTTACACACAAATCATAAGT-AGATGCCAATATCCCAAACGT
* * * * *
64253020 GGTCTTACATACAAATCATAAGTCGATGCCATTGTCCCAGACGT
1 GGTCTTACACACAAATCATAAGTAGATGCCAATATCCCAAACGT
64253064 GGTCTTACAC
1 GGTCTTACAC
64253074 GATCACACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
42 10 0.23
43 6 0.14
44 27 0.61
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (44 bp):
GGTCTTACACACAAATCATAAGTAGATGCCAATATCCCAAACGT
Found at i:64262767 original size:49 final size:46
Alignment explanation
Indices: 64262694--64262867 Score: 201
Period size: 49 Copynumber: 3.7 Consensus size: 46
64262684 GGGATAAAAT
* *
64262694 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCACCATCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-ATCAAC-TCGA
* * *
64262742 GCCCGATGCCATGTCCCAGACATGGTCTGACACTAACA-CAACGTTGA
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCATCAAC-TCGA
* * *
64262789 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCA-TCAACTCGA
64262834 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
64262868 GGCTCTCATA
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
44 12 0.11
45 16 0.15
46 14 0.13
47 21 0.20
48 12 0.11
49 32 0.30
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCATCAACTCGA
Found at i:64268861 original size:50 final size:49
Alignment explanation
Indices: 64268742--64268963 Score: 167
Period size: 46 Copynumber: 4.7 Consensus size: 49
64268732 ATAAGATGCT
* *
64268742 GATGCCATGTCCCAGACATGGTTTTACACTAGCTATCACCATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCACCATCGAGGCC
* * * * * *
64268791 GATGTCATGTCCCAGACATGGTCTTATACTAGCTCTCGCATATCCG-TGTC
1 GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCAC-CAT-CGAGGCC
* * ** *
64268841 GATGCCATGTCCCAGACATGGTCTTATACTAAC-A-CAACATTTA-GCT
1 GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCACCATCGAGGCC
* * * *
64268887 GATG-CATGTCCCAAACAT-GTCTTATACTGGCT-TAAGTC-TCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCA-CCATCGAGGCC
* * *
64268933 AATG-CATGTCCCAAACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTATACTAGC
64268964 ACTCGTCTCA
Statistics
Matches: 137, Mismatches: 29, Indels: 17
0.75 0.16 0.09
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 36 0.26
47 2 0.01
48 1 0.01
49 34 0.25
50 35 0.26
51 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTATACTAGCTATCACCATCGAGGCC
Found at i:64276764 original size:40 final size:40
Alignment explanation
Indices: 64276666--64276756 Score: 155
Period size: 40 Copynumber: 2.3 Consensus size: 40
64276656 ATGCATTTAG
*
64276666 GGGTATCGAAGTACAAACAGGGGCACCTATGTGCAATCAA
1 GGGTATCGAAGTACAAACAGGGGCACATATGTGCAATCAA
*
64276706 GGGTATCAAAGTACAAACAGGGGCACATATGTGCAATCAA
1 GGGTATCGAAGTACAAACAGGGGCACATATGTGCAATCAA
*
64276746 GGGTACCGAAG
1 GGGTATCGAAG
64276757 GAGAAACAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.36, C:0.19, G:0.29, T:0.16
Consensus pattern (40 bp):
GGGTATCGAAGTACAAACAGGGGCACATATGTGCAATCAA
Found at i:64276784 original size:40 final size:40
Alignment explanation
Indices: 64276678--64276777 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
64276668 GTATCGAAGT
** * * *
64276678 ACAAACAGGGGCACCTATGTGCAATCAAGGGTATCAAAGT
1 ACAAACAAAGGCACATATGTGCAATCAAGGGTACCAAAGG
** *
64276718 ACAAACAGGGGCACATATGTGCAATCAAGGGTACCGAAGG
1 ACAAACAAAGGCACATATGTGCAATCAAGGGTACCAAAGG
* *
64276758 AGAAACAAAGGCACTTATGT
1 ACAAACAAAGGCACATATGT
64276778 AGAATCATTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.39, C:0.19, G:0.26, T:0.16
Consensus pattern (40 bp):
ACAAACAAAGGCACATATGTGCAATCAAGGGTACCAAAGG
Found at i:64280660 original size:33 final size:32
Alignment explanation
Indices: 64280618--64280707 Score: 117
Period size: 33 Copynumber: 2.7 Consensus size: 32
64280608 AGTTGCCAAT
**
64280618 TAAGACCATACTTGGGCTATGGCAATAGGATAA
1 TAAGACCATAC-CAGGCTATGGCAATAGGATAA
*
64280651 TAAGACCATAACCAGGTTATGGCAATAGGATAA
1 TAAGACCAT-ACCAGGCTATGGCAATAGGATAA
*
64280684 TAAGACCATAACCAGGTTATGGCA
1 TAAGACCAT-ACCAGGCTATGGCA
64280708 TGTGAATGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
33 51 0.96
34 2 0.04
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (32 bp):
TAAGACCATACCAGGCTATGGCAATAGGATAA
Found at i:64280725 original size:32 final size:33
Alignment explanation
Indices: 64280635--64280707 Score: 146
Period size: 33 Copynumber: 2.2 Consensus size: 33
64280625 ATACTTGGGC
64280635 TATGGCAATAGGATAATAAGACCATAACCAGGT
1 TATGGCAATAGGATAATAAGACCATAACCAGGT
64280668 TATGGCAATAGGATAATAAGACCATAACCAGGT
1 TATGGCAATAGGATAATAAGACCATAACCAGGT
64280701 TATGGCA
1 TATGGCA
64280708 TGTGAATGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (33 bp):
TATGGCAATAGGATAATAAGACCATAACCAGGT
Found at i:64282901 original size:30 final size:30
Alignment explanation
Indices: 64282843--64282902 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
64282833 TTCCCAAGCC
* * *
64282843 TAGGGGCAAAAGTGTAGTTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
64282873 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
64282903 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:64299485 original size:43 final size:43
Alignment explanation
Indices: 64299400--64299485 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
64299390 ATCACATGTA
* * * *
64299400 TCGCATCCATTATGAACTCGGACCACTCAACGAGTTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCAGATGC
64299443 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCAGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCAGATGC
64299486 CACATATATC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCAGATGC
Found at i:64304713 original size:41 final size:41
Alignment explanation
Indices: 64304632--64304713 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
64304622 AGCGATATTT
* *
64304632 GGGCTTTAAGCCTAGCAAGCCTTGTGCTGGTGAATTAAATC
1 GGGCTTTAAGCCTAGCAAGCCTTGTGCCGGTGAATAAAATC
* * * *
64304673 GGGCTTTATGCCTAGC-AGGCTTATTGCCGGTGTATAAAATC
1 GGGCTTTAAGCCTAGCAAGCCTT-GTGCCGGTGAATAAAATC
64304714 AAACCTTCAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (41 bp):
GGGCTTTAAGCCTAGCAAGCCTTGTGCCGGTGAATAAAATC
Found at i:64304774 original size:15 final size:15
Alignment explanation
Indices: 64304754--64304789 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
64304744 TGTAAAATAT
*
64304754 AGGCTTCTGCCTAGC
1 AGGCTTATGCCTAGC
64304769 AGGCTTATGCCTAGC
1 AGGCTTATGCCTAGC
64304784 AGGCTT
1 AGGCTT
64304790 TATGTCAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.28
Consensus pattern (15 bp):
AGGCTTATGCCTAGC
Found at i:64318725 original size:17 final size:16
Alignment explanation
Indices: 64318705--64318747 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
64318695 TCTCTTTGCT
*
64318705 TTAATTAAATCAGTTAA
1 TTAATTAAAT-AATTAA
*
64318722 TTAATTTAAATAATTAG
1 TTAA-TTAAATAATTAA
64318739 TTAATTAAA
1 TTAATTAAA
64318748 ACAAACCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 5 0.22
17 12 0.52
18 6 0.26
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (16 bp):
TTAATTAAATAATTAA
Found at i:64324097 original size:5 final size:5
Alignment explanation
Indices: 64324087--64324154 Score: 50
Period size: 5 Copynumber: 12.8 Consensus size: 5
64324077 TTAGACTTAT
* *
64324087 TTTTA TTTTA TTTTA TTTTTA TTTTTC TTTTGA TTTTTA TTTTCA TTTCAA
1 TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A -TTTTA TTTT-A TTT-TA
64324138 TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
64324155 GCAAGACATA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
3 3 0.06
5 26 0.50
6 19 0.37
7 4 0.08
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:64324099 original size:11 final size:11
Alignment explanation
Indices: 64324083--64324154 Score: 65
Period size: 12 Copynumber: 6.2 Consensus size: 11
64324073 TTATTTAGAC
64324083 TTATTTTTATT
1 TTATTTTTATT
64324094 TTA-TTTTATTT
1 TTATTTTTA-TT
*
64324105 TTATTTTTCTT
1 TTATTTTTATT
64324116 TTGATTTTTATT
1 TT-ATTTTTATT
**
64324128 TTCATTTCAATT
1 TT-ATTTTTATT
64324140 TTATTATTTTATT
1 TTA-T-TTTTATT
64324153 TT
1 TT
64324155 GCAAGACATA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
10 5 0.10
11 13 0.27
12 24 0.49
13 7 0.14
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.76
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:64324124 original size:7 final size:6
Alignment explanation
Indices: 64324083--64324134 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
64324073 TTATTTAGAC
* *
64324083 TTATTT TTA-TT TTA-TT TTATTT TTATTT TTCTTT TGATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
64324129 TCATTT
1 TTATTT
64324135 CAATTTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 10 0.25
6 30 0.75
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (6 bp):
TTATTT
Found at i:64330687 original size:49 final size:50
Alignment explanation
Indices: 64330634--64330760 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
64330624 CTGGTACGGA
** *
64330634 TAGTAGCCTGTACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGTACTTAGTACTACACATGCGACCTAACCATCCGATACACG
** *** * *
64330683 TAGTAGCCTACACTTAGTACTACACACATGACCTAACCATCTGATACATG
1 TAGTAGCCTGTACTTAGTACTACACATGCGACCTAACCATCCGATACACG
*
64330733 TAGTAGCCTGTACTTAGTACTATACATG
1 TAGTAGCCTGTACTTAGTACTACACATG
64330761 AGACTAGATA
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
49 28 0.45
50 34 0.55
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGTACTTAGTACTACACATGCGACCTAACCATCCGATACACG
Found at i:64331083 original size:27 final size:27
Alignment explanation
Indices: 64331053--64331106 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
64331043 TCATACAACC
* *
64331053 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
64331080 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
64331107 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:64334346 original size:55 final size:56
Alignment explanation
Indices: 64334281--64334395 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 56
64334271 AGCATGGCTG
* * * *
64334281 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTAGCAGTGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTAGCAGGGCCA
* * * *
64334337 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCAGGGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTAGCAGGGCCA
64334392 CCAG
1 CCAG
64334396 GACGCTTCCC
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
55 29 0.58
56 21 0.42
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTAGCAGGGCCA
Found at i:64334348 original size:28 final size:27
Alignment explanation
Indices: 64334306--64334395 Score: 117
Period size: 28 Copynumber: 3.2 Consensus size: 27
64334296 GTGACAGAGT
* *
64334306 CACCAGATACAGATATTTTGTAGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGGGC
**
64334335 CACCAGAACAGATATACGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGGGC
64334362 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGAT-ATTTGTGGCAGGGC
64334390 CACCAG
1 CACCAG
64334396 GACGCTTCCC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGGGC
Found at i:64334363 original size:27 final size:28
Alignment explanation
Indices: 64334328--64334395 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
64334318 ATATTTTGTA
*
64334328 GCAGTGCCACCAGAACAGAT-ATACGTG
1 GCAGGGCCACCAGAACAGATAATACGTG
**
64334355 GCAGGGCCACCAGAACAGATAATTTGTG
1 GCAGGGCCACCAGAACAGATAATACGTG
64334383 GCAGGGCCACCAG
1 GCAGGGCCACCAG
64334396 GACGCTTCCC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 19 0.51
28 18 0.49
ACGTcount: A:0.31, C:0.26, G:0.29, T:0.13
Consensus pattern (28 bp):
GCAGGGCCACCAGAACAGATAATACGTG
Found at i:64334548 original size:28 final size:28
Alignment explanation
Indices: 64334501--64334592 Score: 150
Period size: 28 Copynumber: 3.3 Consensus size: 28
64334491 AAGTTAACCC
* *
64334501 TAGGGGTATAGA-GGTCATTTTGCATTCA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
64334529 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
64334557 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
64334585 TAGGGGTA
1 TAGGGGTA
64334593 CTCTAGTCAT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:64334856 original size:8 final size:8
Alignment explanation
Indices: 64334839--64334871 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
64334829 GCCCAAAATA
64334839 TCGGCTTT
1 TCGGCTTT
*
64334847 TCGGCATT
1 TCGGCTTT
64334855 TCGGCTTT
1 TCGGCTTT
64334863 TCGGCTTT
1 TCGGCTTT
64334871 T
1 T
64334872 GCCGATCTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.03, C:0.24, G:0.24, T:0.48
Consensus pattern (8 bp):
TCGGCTTT
Found at i:64338442 original size:17 final size:17
Alignment explanation
Indices: 64338420--64338461 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
64338410 ACCTAGGTGG
*
64338420 CTTCAATTCCAAAATTA
1 CTTCAATCCCAAAATTA
*
64338437 CTTCAATCCCAAAATTG
1 CTTCAATCCCAAAATTA
64338454 CTTCAATC
1 CTTCAATC
64338462 TTTCGAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (17 bp):
CTTCAATCCCAAAATTA
Found at i:64341975 original size:55 final size:56
Alignment explanation
Indices: 64341910--64342024 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
64341900 AGCATGGATG
* * *
64341910 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTATGGCA-TAGCCA
* * * *
64341966 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAATAGATAATTTATGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTATGGCATAGCCA
64342021 CCAG
1 CCAG
64342025 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 27 0.54
56 22 0.44
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTATGGCATAGCCA
Found at i:64341987 original size:27 final size:28
Alignment explanation
Indices: 64341935--64342004 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
64341925 GTGACAGAGT
* *
64341935 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATATTATGTGGCAGGGC
64341964 CACCAGAACAGATA-TATGTGGCAGGGC
1 CACCAGAACAGATATTATGTGGCAGGGC
*
64341991 CACCAGAATAGATA
1 CACCAGAACAGATA
64342005 ATTTATGGCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 24 0.63
28 7 0.18
29 7 0.18
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTGGCAGGGC
Found at i:64342022 original size:28 final size:27
Alignment explanation
Indices: 64341935--64342024 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
64341925 GTGACAGAGT
*
64341935 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
64341964 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
* *
64341991 CACCAGAATAGATAATTTATGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
64342019 CACCAG
1 CACCAG
64342025 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:64347447 original size:13 final size:13
Alignment explanation
Indices: 64347429--64347460 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
64347419 TCACATGCCT
64347429 GTGTGGCCAAACC
1 GTGTGGCCAAACC
64347442 GTGTGGCCAAACC
1 GTGTGGCCAAACC
*
64347455 ATGTGG
1 GTGTGG
64347461 TCAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.25, G:0.34, T:0.19
Consensus pattern (13 bp):
GTGTGGCCAAACC
Found at i:64348930 original size:43 final size:43
Alignment explanation
Indices: 64348865--64348987 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 43
64348855 ATCACATGTA
* * *
64348865 TCGCATGCATTATGAACTCAGACCACTCAACGAGTTCGAATGC
1 TCGCATACATAATGAACACAGACCACTCAACGAGTTCGAATGC
* * *
64348908 TCGCATCCATAATGAACACAGACAACTCAACAAGTTCGAATGC
1 TCGCATACATAATGAACACAGACCACTCAACGAGTTCGAATGC
* * * * *
64348951 -CACATATATCACGAACCCAGACCACTCAACGAGTTCG
1 TCGCATACATAATGAACACAGACCACTCAACGAGTTCG
64348988 GACTTTTTAA
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
42 29 0.43
43 38 0.57
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (43 bp):
TCGCATACATAATGAACACAGACCACTCAACGAGTTCGAATGC
Found at i:64348986 original size:42 final size:43
Alignment explanation
Indices: 64348878--64348987 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 43
64348868 CATGCATTAT
* * * *
64348878 GAACTCAGACCACTCAACGAGTTCGAATGCTCGCATCCATAAT
1 GAACACAGACCACTCAACGAGTTCGAATGCTCACATACATAAC
* * * *
64348921 GAACACAGACAACTCAACAAGTTCGAATGC-CACATATATCAC
1 GAACACAGACCACTCAACGAGTTCGAATGCTCACATACATAAC
*
64348963 GAACCCAGACCACTCAACGAGTTCG
1 GAACACAGACCACTCAACGAGTTCG
64348988 GACTTTTTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.36, C:0.31, G:0.15, T:0.17
Consensus pattern (43 bp):
GAACACAGACCACTCAACGAGTTCGAATGCTCACATACATAAC
Found at i:64351029 original size:41 final size:42
Alignment explanation
Indices: 64350969--64351125 Score: 133
Period size: 42 Copynumber: 3.8 Consensus size: 42
64350959 ATCGGAATCA
*
64350969 ATATGAG-TTATCATGTAAGACCATATCTGGGATATCGCATTG
1 ATATGAGATT-TCATGTAAGACCATATCTGGGATATCGCATCG
* * *
64351011 ATATGAGATTTC-TGTAAGACCA-AGTTTGGGACATGGCATCG
1 ATATGAGATTTCATGTAAGACCATA-TCTGGGATATCGCATCG
* * * * *
64351052 AAATGAGAATTCGTATAAGACCATATCTAGGATAT-GCCATCG
1 ATATGAGATTTCATGTAAGACCATATCTGGGATATCG-CATCG
* ** **
64351094 ATGTGAGATCCCATGTAAGACCAGGTCTGGGA
1 ATATGAGATTTCATGTAAGACCATATCTGGGA
64351126 CATGGTGTGT
Statistics
Matches: 90, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
40 1 0.01
41 34 0.38
42 52 0.58
43 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
ATATGAGATTTCATGTAAGACCATATCTGGGATATCGCATCG
Found at i:64351101 original size:42 final size:41
Alignment explanation
Indices: 64350984--64351101 Score: 114
Period size: 41 Copynumber: 2.9 Consensus size: 41
64350974 AGTTATCATG
* * *
64350984 TAAGACCATATCTGGGATAT-CGCATTGATATGAGATTTCTG
1 TAAGACCATATCTGGGATATGC-CATCGATATGAGAATTCTA
* * * *
64351025 TAAGACCA-AGTTTGGGACATGGCATCGAAATGAGAATTCGTA
1 TAAGACCATA-TCTGGGATATGCCATCGATATGAGAATTC-TA
* *
64351067 TAAGACCATATCTAGGATATGCCATCGATGTGAGA
1 TAAGACCATATCTGGGATATGCCATCGATATGAGA
64351102 TCCCATGTAA
Statistics
Matches: 60, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.02
41 30 0.50
42 28 0.47
43 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (41 bp):
TAAGACCATATCTGGGATATGCCATCGATATGAGAATTCTA
Found at i:64352292 original size:56 final size:56
Alignment explanation
Indices: 64352200--64352372 Score: 224
Period size: 56 Copynumber: 3.1 Consensus size: 56
64352190 CATGACATAG
* * *
64352200 GATTTCGATATGTGATGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGT
1 GATTCCGATATATG-TGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGT
64352257 GATTCCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGT
1 GATTCCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGT
* * * * **
64352313 GATTCCAATTTATGTGTGCAAGTAAGACCCTGTCTGGGATA-G-TGGCATCGATATGT
1 GATTCCGATATATGTGTGCGAGTAAGACCATGT-T-TAATACGTTGGCATCGATATGT
64352369 GATT
1 GATT
64352373 ACATGTAAGA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
56 88 0.84
57 14 0.13
58 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (56 bp):
GATTCCGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGT
Found at i:64356537 original size:44 final size:44
Alignment explanation
Indices: 64356484--64356748 Score: 199
Period size: 44 Copynumber: 5.7 Consensus size: 44
64356474 TATACAAGCT
*
64356484 AGTGTAAGACCTGTTTGGGACATGGGGTCAGCTTGTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGGGTCAGCTTGTTGTGTGTC
64356528 AGTGTAAGACCTGTCTGGGACATGGGGTCAGCTTGTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGGGTCAGCTTGTTGTGTGTC
* * ** * * * * *
64356572 AATGTAGGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGGGTC-A-GCT--T-GTTGTGTGTC
** * * *
64356621 AGTGTAAGACCTGTCTGGGACATGGCATTAGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGGGTCAG-CTTG-T-TGTG--TGTC
** * * *
64356670 AGTGTAAGACCTGTCTGGGACATGGCATGA-CTTTTATGTGTTAGGC
1 AGTGTAAGACCTGTCTGGGACATGGGGTCAGCTTGT-TGTG-T-GTC
* *
64356716 AGTGTAAGACCATGTCTAGGACATGGCGTCAGC
1 AGTGTAAGACC-TGTCTGGGACATGGGGTCAGC
64356749 ATCTTATCCC
Statistics
Matches: 181, Mismatches: 27, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
44 68 0.38
45 2 0.01
46 21 0.12
47 21 0.12
48 5 0.03
49 64 0.35
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (44 bp):
AGTGTAAGACCTGTCTGGGACATGGGGTCAGCTTGTTGTGTGTC
Found at i:64356659 original size:49 final size:50
Alignment explanation
Indices: 64356574--64356697 Score: 173
Period size: 49 Copynumber: 2.5 Consensus size: 50
64356564 TGTGTGTCAA
* * *
64356574 TGTAGGACCTGTCTGGGACATGGCA-TCGACACTGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATTAGACACTGATAGATGAAAGCCAG
* *
64356623 TGTAAGACCTGTCTGGGACATGGCATTAG-C-CTTGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATTAGACAC-TGATAGATGAAAGCCAG
64356672 TGTAAGACCTGTCTGGGACATGGCAT
1 TGTAAGACCTGTCTGGGACATGGCAT
64356698 GACTTTTATG
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
48 1 0.01
49 65 0.96
50 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (50 bp):
TGTAAGACCTGTCTGGGACATGGCATTAGACACTGATAGATGAAAGCCAG
Found at i:64363667 original size:51 final size:51
Alignment explanation
Indices: 64363604--64363728 Score: 146
Period size: 51 Copynumber: 2.5 Consensus size: 51
64363594 CGGATGCCCG
* * * *
64363604 GTGGCCAGCACATAGTACCACCCTTG-TAGTCAAAGCTACCTTCTT-CATAAA
1 GTGGCCTGCACATAGTACCACACTTGTTA-CCAAAGCTACCTT-TTACACAAA
* * *
64363655 GTGGCCTTCACATAGTACCACACTTGTTACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTTACCAAAGCTACCTTTTACACAAA
*
64363706 GTGGCCTGCACTTAGTACCACAC
1 GTGGCCTGCACATAGTACCACAC
64363729 ATGTGATCGA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 2 0.03
51 59 0.94
52 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTTACCAAAGCTACCTTTTACACAAA
Found at i:64363742 original size:51 final size:51
Alignment explanation
Indices: 64363658--64363886 Score: 199
Period size: 51 Copynumber: 4.5 Consensus size: 51
64363648 TCATAAAGTG
* * * * * ** *
64363658 GCCTTCACATAGTACCACACTTGTTACCAAAGCTATCTTTTACACATAGTG
1 GCCTGCACTTAGTACTACACATGTGACCAAAGCTATCTGGTACACATAGTA
* * * * * *
64363709 GCCTGCACTTAGTACCACACATGTGATCGAAGCTATCAGGTACGCATAATA
1 GCCTGCACTTAGTACTACACATGTGACCAAAGCTATCTGGTACACATAGTA
* * * *
64363760 GCCTGCACTAAGTACTACACATGCGACCTAA-CAATCTGGTACACATAGTA
1 GCCTGCACTTAGTACTACACATGTGACCAAAGCTATCTGGTACACATAGTA
* * * * * ***
64363810 GCCTGCACTTAGTACTGCACACGTGACCTAAAACCATTTTAAACACATAGTA
1 GCCTGCACTTAGTACTACACATGTGACC-AAAGCTATCTGGTACACATAGTA
*
64363862 GCCTGCACATAGTACTACACATGTG
1 GCCTGCACTTAGTACTACACATGTG
64363887 TTCTCACAAT
Statistics
Matches: 142, Mismatches: 34, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
50 39 0.27
51 67 0.47
52 36 0.25
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (51 bp):
GCCTGCACTTAGTACTACACATGTGACCAAAGCTATCTGGTACACATAGTA
Found at i:64363824 original size:50 final size:50
Alignment explanation
Indices: 64363698--64363886 Score: 191
Period size: 50 Copynumber: 3.7 Consensus size: 50
64363688 AGCTATCTTT
* * * * * *
64363698 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCAGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGG
* * * *
64363749 TACGCATAATAGCCTGCACTAAGTACTACACATGCGACCTAACAATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGG
* * * **
64363799 TACACATAGTAGCCTGCACTTAGTACTGCACACGTGACCTAA-AACCATTT
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATC-TGG
*
64363849 TAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 T--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
64363887 TTCTCACAAT
Statistics
Matches: 113, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
49 3 0.03
50 44 0.39
51 34 0.30
52 32 0.28
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGG
Found at i:64367091 original size:21 final size:21
Alignment explanation
Indices: 64367042--64367082 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
64367032 CTTTTATTTT
*
64367042 AATGATTGATGATAGATTATA
1 AATGTTTGATGATAGATTATA
64367063 AATGTTTGATGATAG-TTATA
1 AATGTTTGATGATAGATTATA
64367083 CAAGTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
AATGTTTGATGATAGATTATA
Found at i:64371516 original size:93 final size:93
Alignment explanation
Indices: 64371357--64371528 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
64371347 AGGATATTTT
* *
64371357 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGCCCGAACACGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACGCCCGAACACGTTGAG
64371422 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
64371450 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACGCCCGAACACGTTGA
*
64371514 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
64371529 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACGCCCGAACACGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:64371534 original size:46 final size:46
Alignment explanation
Indices: 64371362--64371536 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
64371352 ATTTTGGCAT
* * *
64371362 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
64371408 CCGAACACGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
64371453 ATCC-AAGCTCGTTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGC
1 --CCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
64371501 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64371537 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
45 3 0.03
46 65 0.65
47 29 0.29
48 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:64378331 original size:42 final size:42
Alignment explanation
Indices: 64378215--64378334 Score: 118
Period size: 43 Copynumber: 2.8 Consensus size: 42
64378205 GTCTGAGACA
* * * *
64378215 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTTAGATT
1 TCGTGTAAGACCATGTATGGGACACAGGCATCGATCTAGATT
* *
64378257 TACGTATAAGACCATGTATAGGACATCA-GCATCGTATCT-GATT
1 T-CGTGTAAGACCATGTATGGGACA-CAGGCATCG-ATCTAGATT
* * *
64378300 TCGTGTAAGACCCTGTTTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTATGGGACACAGGCATCGAT
64378335 ATTGAATTAC
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
41 3 0.05
42 26 0.41
43 29 0.46
44 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTGTAAGACCATGTATGGGACACAGGCATCGATCTAGATT
Found at i:64378592 original size:41 final size:41
Alignment explanation
Indices: 64378542--64378625 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
64378532 ATGAAGCATG
64378542 ATATATATGCAAACAAAGGAACATGGTTAAGTTTATGAATT
1 ATATATATGCAAACAAAGGAACATGGTTAAGTTTATGAATT
64378583 ATATATATGCAAACAAAGGAACATGGTTAAGTTTATGAATT
1 ATATATATGCAAACAAAGGAACATGGTTAAGTTTATGAATT
64378624 AT
1 AT
64378626 TCTACGAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (41 bp):
ATATATATGCAAACAAAGGAACATGGTTAAGTTTATGAATT
Found at i:64381872 original size:32 final size:32
Alignment explanation
Indices: 64381831--64381893 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
64381821 ACTGTGTTTT
64381831 CTAAGATAGATCTGAGATCGGGTTATTACCAG
1 CTAAGATAGATCTGAGATCGGGTTATTACCAG
64381863 CTAAGATAGATCTGAGATCGGGTTATTACCA
1 CTAAGATAGATCTGAGATCGGGTTATTACCA
64381894 ATTGCGAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (32 bp):
CTAAGATAGATCTGAGATCGGGTTATTACCAG
Found at i:64388181 original size:29 final size:29
Alignment explanation
Indices: 64388139--64388236 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
64388129 CATGAAATTG
64388139 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
64388168 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
64388197 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
64388225 ACACTAAGTGTG
1 GCACTAAGTGTG
64388237 GACTTACTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 17 0.27
29 46 0.73
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:64396101 original size:29 final size:29
Alignment explanation
Indices: 64396059--64396159 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
64396049 CATGAAATTG
*
64396059 GCACTAAGTTTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
64396088 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
64396117 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
64396145 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
64396160 ACTTACTATA
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 19 0.30
29 45 0.70
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:64398578 original size:15 final size:15
Alignment explanation
Indices: 64398558--64398635 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
64398548 CATAGTATCG
*
64398558 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTT
*
64398573 TATCTTGGATCTCTT
1 TATCTTGGATTTCTT
*
64398588 TAT-TCTAGATTTCTT
1 TATCT-TGGATTTCTT
* *
64398603 TATTCTAGG-TTTCTC
1 TA-TCTTGGATTTCTT
64398618 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
64398633 TAT
1 TAT
64398636 TCGGTTTTCT
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
14 6 0.12
15 41 0.82
16 2 0.04
17 1 0.02
ACGTcount: A:0.14, C:0.15, G:0.13, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:64401184 original size:93 final size:93
Alignment explanation
Indices: 64401025--64401198 Score: 233
Period size: 93 Copynumber: 1.9 Consensus size: 93
64401015 CTAGGATATT
* * * * * ** *
64401025 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGTCTGAACTCGTTG
1 TGGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCCCAACTCATTG
64401090 AGTTGAGTCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* *
64401118 TGGGCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATAGATGCAAACG-CCCAAGCTCATT
1 TGGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCCCAA-CTCATT
*
64401182 GAGTTGAGTCTGAGTTC
65 GAGTTGAGTCCGAGTTC
64401199 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
92 3 0.04
93 66 0.96
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
TGGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATAGATGCAAACGTCCCAACTCATTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:64425944 original size:22 final size:24
Alignment explanation
Indices: 64425899--64425944 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
64425889 TAAACTTTAA
64425899 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
64425923 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
64425945 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:64427578 original size:39 final size:40
Alignment explanation
Indices: 64427534--64427701 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
64427524 CGGAGTTTAG
* * *
64427534 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
64427573 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
64427613 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
64427653 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
64427694 CCGGATAT
1 CCGGATAT
64427702 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:64427684 original size:41 final size:40
Alignment explanation
Indices: 64427557--64427701 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
64427547 CTCGCACAAG
* * * * *
64427557 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
64427597 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
64427637 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
64427678 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
64427702 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:64435719 original size:27 final size:27
Alignment explanation
Indices: 64435611--64435734 Score: 121
Period size: 27 Copynumber: 4.7 Consensus size: 27
64435601 TCAGTTTACC
*
64435611 AAATTACTGAAATACCC-CAG-TTGTA
1 AAATTACCGAAATACCCTCAGTTTGTA
* * *
64435636 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TACCCTCAGTTTGTA
* * *
64435663 AAATTACCCAAATATCCTC-GAATTGTA
1 AAATTACCGAAATACCCTCAG-TTTGTA
*
64435690 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCCTCAGTTTGTA
*
64435717 AAATTACTGAAATACCCT
1 AAATTACCGAAATACCCT
64435735 TGACATGTAA
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
24 3 0.04
25 12 0.15
26 3 0.04
27 59 0.73
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCAGTTTGTA
Found at i:64435720 original size:54 final size:55
Alignment explanation
Indices: 64435601--64435762 Score: 156
Period size: 54 Copynumber: 3.0 Consensus size: 55
64435591 TTAGAATACT
* ** *
64435601 TCAGTTTACCAAATTACTGAAATACCC-C-A-GTTGTAAAATTACCAAAGTACCC
1 TCAGTTTACAAAATTACCCAAATACCCTCGACATTGTAAAATTACCAAAGTACCC
* * * *
64435653 CCGGTTTATAAAATTACCCAAATATCCTCGA-ATTGTAAAATTACCGAAA-TACCC
1 TCAGTTTACAAAATTACCCAAATACCCTCGACATTGTAAAATTACC-AAAGTACCC
* ** * *
64435707 TCAGTTTGCAAAATTACTGAAATACCCTTGACA-TGTAAAATTATCAAAGTACCC
1 TCAGTTTACAAAATTACCCAAATACCCTCGACATTGTAAAATTACCAAAGTACCC
64435761 TC
1 TC
64435763 GAATTACAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
52 20 0.23
53 4 0.05
54 60 0.68
55 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28
Consensus pattern (55 bp):
TCAGTTTACAAAATTACCCAAATACCCTCGACATTGTAAAATTACCAAAGTACCC
Found at i:64435811 original size:27 final size:27
Alignment explanation
Indices: 64435756--64435992 Score: 276
Period size: 27 Copynumber: 8.7 Consensus size: 27
64435746 ATTATCAAAG
* * * *
64435756 TACCCTCGAATTACAAAAATTATTGTTT
1 TACCCTCGATTTAC-AGAATTACTATTT
64435784 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
64435811 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
64435838 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
64435865 TACCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
64435892 TAGCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
64435919 TATCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
**
64435946 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
64435973 TACCCTCGATTGACAGAATT
1 TACCCTCGATTTACAGAATT
64435993 TGTGACATCC
Statistics
Matches: 179, Mismatches: 30, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
27 166 0.93
28 13 0.07
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:64435891 original size:81 final size:81
Alignment explanation
Indices: 64435756--64435983 Score: 321
Period size: 81 Copynumber: 2.8 Consensus size: 81
64435746 ATTATCAAAG
* *
64435756 TACCCTCGAATTACAAAAATTATTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTAC-AAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
*
64435821 TTATAAAATTACTATTT
65 TTATAAAATTACCATTT
* * * * *
64435838 TACCCTTGATTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTATTATTTTAGCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
64435903 TATAGAATTACCATTT
66 TATAAAATTACCATTT
* * * **
64435919 TATCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
64435984 GACAGAATTT
Statistics
Matches: 127, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
81 115 0.91
82 12 0.09
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TATAAAATTACCATTT
Found at i:64440621 original size:27 final size:27
Alignment explanation
Indices: 64440579--64440681 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
64440569 GATAGGGGTG
* *
64440579 TTACAGAATTATTGTTTTACCCTCGAT
1 TTACAAAATTACTGTTTTACCCTCGAT
64440606 TTACAAAATTACTGTTTTACCCTCGAT
1 TTACAAAATTACTGTTTTACCCTCGAT
* *
64440633 TTATAGAATTACTGTTTTACCCTCGAT
1 TTACAAAATTACTGTTTTACCCTCGAT
* **
64440660 TTATAAAATTACCATTTTACCC
1 TTACAAAATTACTGTTTTACCC
64440682 CTAGGGTGTT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (27 bp):
TTACAAAATTACTGTTTTACCCTCGAT
Found at i:64441029 original size:29 final size:27
Alignment explanation
Indices: 64441005--64441065 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
64440995 TCGCCACATA
64441005 AATATCTGT-TCTGGTGGCCTAGCCAC
1 AATATCTGTATCTGGTGGCCTAGCCAC
* * * *
64441031 AATATCTGTATCTGGTGACTTCGTCAC
1 AATATCTGTATCTGGTGGCCTAGCCAC
64441058 AATATCTG
1 AATATCTG
64441066 GCAGCCACGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
AATATCTGTATCTGGTGGCCTAGCCAC
Found at i:64441215 original size:6 final size:6
Alignment explanation
Indices: 64441184--64441231 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
64441174 TTGCATTCAC
* *
64441184 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCT
64441232 AGTTGTGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 3 0.09
6 28 0.80
7 2 0.06
8 2 0.06
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:64443070 original size:518 final size:516
Alignment explanation
Indices: 64441881--64443451 Score: 2448
Period size: 519 Copynumber: 3.0 Consensus size: 516
64441871 GGGGTGTTAC
* * *
64441881 AGATCGTGTGGAGCTTACTGACTTCAATTTAATTTCATCACCAGGGGACACATGGATGTTTAACA
1 AGATCGTGTGGAGCTTACTAAC-TCAATTCAATTTCATCACCAGGGGACACATGGATGTGTAACA
* * * *
64441946 TGACCGTGTGTTACACACGGCTAAGAGACACACCCGTTTCTCTTCTTGTGTGGACACAAGTAGGC
65 TGACCGTGTGTCACACACGGCTAAGAGACACACCCGTGTCTCTACTTGTGTGGACAAAAGTAGGC
64442011 CATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCTACATAAGACAAAAATGGCTAAGTG
130 CATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCTACATAAGACAAAAATGGCTAAGTG
* * *
64442076 ACATTTACTTGTCACTTTATTACTTGTTTCGATTGTGTACACCTGCACATTTCCATTGTTCAACA
195 ACATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTCCATCGTTCAACA
* *
64442141 CGCTAGTGTGAACAGGCCATGTGCCTCACACGGCTTCAGACATGACTATGTCTCAGGCCGTGTAG
260 CGCTAGTGTGAACAGGCCGTGTGCCTCACACGGCTTCAGACATGACTGTGTCTCAGGCCGTGTAG
* * *
64442206 AAACAGGGCATACATACTGACTTGTATCACATGGCCGAAGACACGTCCGTGTGCCAGGCTATGTG
325 AAACAGGGCATACATACTGACTTGTATCACACGGCCGAAGACACGCCCGTGTGCCAGGCTGTGTG
*
64442271 AAAACTAGAGGGTATACTGACTTATGCAACACGGCCAAGGCACATGCTCGTGTGTGTGTACCTTG
390 AAAACTAGAGGGTATACTGACTTATGCAACACGGCCAAGGCACACGCTCGTGTGTGTGTACCTTG
* *
64442336 GC--TGCCAATTAGAGGGGTATACTAACTTGTACCACACCGCCAGTCACACGCCCATGAGGG
455 GCTGTGCCAATTAGAGGGGTATACTAACTTGTACCACACGGCCAGTCACACGCCCATGTGGG
* * *
64442396 AGATCGTGTGGATCTTACTGAATTCAATTCAAGTTCATCACCAGGGGACACATGGATGTGTAACA
1 AGATCGTGTGGAGCTTACT-AACTCAATTCAATTTCATCACCAGGGGACACATGGATGTGTAACA
*
64442461 TGACCGTGTGTCACACACGGCTAAGAGACACACCCGTGTCTCTACTTGTATGGACAAAAGTAGGC
65 TGACCGTGTGTCACACACGGCTAAGAGACACACCCGTGTCTCTACTTGTGTGGACAAAAGTAGGC
*
64442526 CATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCAACATAAGACAAAAATGGCTAAGTG
130 CATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCTACATAAGACAAAAATGGCTAAGTG
* * * *
64442591 ACATTTACTTGACACTTTATT-CCTGTTGCGATTGTGTACACTTGCAAATTTCCATCGTTCAAAA
195 ACATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTCCATCGTTCAACA
** * * *
64442655 CATTAGTGTGAACAGGCCGTGTGCCTTACACGGCTTCAGACATGACTGTGTCTCATGCTGTGTAG
260 CGCTAGTGTGAACAGGCCGTGTGCCTCACACGGCTTCAGACATGACTGTGTCTCAGGCCGTGTAG
* * * *
64442720 AAACAAGGCATACATACTGACTTGTATCAAACGGCCGAAGACATGCCCGTGTGCCAGACTGTGTG
325 AAACAGGGCATACATACTGACTTGTATCACACGGCCGAAGACACGCCCGTGTGCCAGGCTGTGTG
* * *
64442785 AAAACTAGAGGGTATACTGACTTATGCAACATGGCCAAGGCACACACTCATGTGTGTGTACCTTG
390 AAAACTAGAGGGTATACTGACTTATGCAACACGGCCAAGGCACACGCTCGTGTGTGTGTACCTTG
*
64442850 GTCGTGTGCCAATTAGAAGGGTATACTAACTTGTACCACACGGCCAGTCACACGCCCATGTGGG
455 G-C-TGTGCCAATTAGAGGGGTATACTAACTTGTACCACACGGCCAGTCACACGCCCATGTGGG
* * *
64442914 AGATCGTGTGGAGCTTACTAACTCGAATTCAATTTCATCATCAGGGGACACATAGATGTGTAATA
1 AGATCGTGTGGAGCTTACTAACTC-AATTCAATTTCATCACCAGGGGACACATGGATGTGTAACA
* * *
64442979 TGACCGTGTATCACACACGGATAAGAGACACACTCGTGTCTCTACTTGTGTGGACAAAAGTAGGC
65 TGACCGTGTGTCACACACGGCTAAGAGACACACCCGTGTCTCTACTTGTGTGGACAAAAGTAGGC
* * *
64443044 TATTTGCAAGGCCAATTTTCCACCCCAACTTCAATGTACCTACATAAGACAGAAATGGCTAAGTG
130 CATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCTACATAAGACAAAAATGGCTAAGTG
* *
64443109 ACATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTTCGTCGTT-AACC
195 ACATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTCCATCGTTCAA-C
* *
64443173 ACGCTAGTGTGAACAGGCCGTGTGCCTCACACGGCTTCAAACATGACTGTGTCTCAGGCCATGTA
259 ACGCTAGTGTGAACAGGCCGTGTGCCTCACACGGCTTCAGACATGACTGTGTCTCAGGCCGTGTA
* * * *
64443238 GAAACAGGGCATATATACTGACTTGTATCACACGACCGAATACACGCCCGTGTGCCAGGCAGTGT
324 GAAACAGGGCATACATACTGACTTGTATCACACGGCCGAAGACACGCCCGTGTGCCAGGCTGTGT
* * *
64443303 GAAAACTAGAGGGTATACTGACTTATGCAAAACGGCCAAGGCACACGTTCGTGTGTGTGTACCTC
389 GAAAACTAGAGGGTATACTGACTTATGCAACACGGCCAAGGCACACGCTCGTGTGTGTGTACCTT
* * * * * *
64443368 GGCCATGTGTCAATTAGGGGGGTATACTGACTTGTACCACATGGGCAGTCACACGCCCATGTGAG
454 GG-C-TGTGCCAATTAGAGGGGTATACTAACTTGTACCACACGGCCAGTCACACGCCCATGTGGG
64443433 AGATCGTGTGGAGCTTACT
1 AGATCGTGTGGAGCTTACT
64443452 TGTAACACCC
Statistics
Matches: 958, Mismatches: 90, Indels: 12
0.90 0.08 0.01
Matches are distributed among these distances:
514 215 0.22
515 202 0.21
516 1 0.00
517 4 0.00
518 253 0.26
519 283 0.30
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (516 bp):
AGATCGTGTGGAGCTTACTAACTCAATTCAATTTCATCACCAGGGGACACATGGATGTGTAACAT
GACCGTGTGTCACACACGGCTAAGAGACACACCCGTGTCTCTACTTGTGTGGACAAAAGTAGGCC
ATTTGCAAGGCCAATTTGCCACCCCAACTTCAATGTACCTACATAAGACAAAAATGGCTAAGTGA
CATTTACTTGTCACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTCCATCGTTCAACAC
GCTAGTGTGAACAGGCCGTGTGCCTCACACGGCTTCAGACATGACTGTGTCTCAGGCCGTGTAGA
AACAGGGCATACATACTGACTTGTATCACACGGCCGAAGACACGCCCGTGTGCCAGGCTGTGTGA
AAACTAGAGGGTATACTGACTTATGCAACACGGCCAAGGCACACGCTCGTGTGTGTGTACCTTGG
CTGTGCCAATTAGAGGGGTATACTAACTTGTACCACACGGCCAGTCACACGCCCATGTGGG
Found at i:64444899 original size:40 final size:40
Alignment explanation
Indices: 64444854--64445045 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
64444844 ATAACCACAA
* * *
64444854 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
64444894 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
64444934 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
64444974 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
64445014 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
64445046 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:64444938 original size:80 final size:80
Alignment explanation
Indices: 64444825--64445044 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
64444815 ACCCAAGTTT
* * * * * * * * *
64444825 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
64444888 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
64444904 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
64444968 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
64444984 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
64445045 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:64453088 original size:40 final size:40
Alignment explanation
Indices: 64453044--64453194 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
64453034 ATAACCACAA
* * *
64453044 GCACAATTGCCTTCGGGTCTTAACCTGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
64453084 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * *
64453124 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * *
64453164 GCATAAATGCCTTCGGGGCTTAGCCTGGATA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATA
64453195 AAATCATTAG
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:64453128 original size:80 final size:80
Alignment explanation
Indices: 64453044--64453230 Score: 198
Period size: 80 Copynumber: 2.3 Consensus size: 80
64453034 ATAACCACAA
* * * * * *
64453044 GCACAATTGCCTTCGGGTCTTAACCTGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGGCTTAGC
64453108 CCGGATATATCAACTC
65 CCGGATATATCAACTC
* * *
64453124 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGCACTAGCACAAATGCCTTCGGGGCTTAGCC
* * * *
64453189 TGGATAAAATC-ATTA
66 CGGAT-ATATCAACTC
* * *
64453204 GCATAAATGCCTTCGGGACTTAGCCCG
1 GCACAAATGCCTTCGGGTCTTAACCCG
64453231 AATATCATTC
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
80 83 0.92
81 7 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAAGCACTAGCACAAATGCCTTCGGGGCTTAGCC
CGGATATATCAACTC
Found at i:64453195 original size:40 final size:40
Alignment explanation
Indices: 64453088--64453230 Score: 207
Period size: 40 Copynumber: 3.6 Consensus size: 40
64453078 CAACTCGCAC
* * *
64453088 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCAT
64453128 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
* * *
64453168 AAATGCCTTCGGGGCTTAGCCTGGATAAAATCATTAGCAT
1 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
*
64453208 AAATGCCTTCGGGACTTAGCCCG
1 AAATGCCTTCGGGTCTTAGCCCG
64453231 AATATCATTC
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 90 0.96
41 4 0.04
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
Found at i:64458956 original size:43 final size:43
Alignment explanation
Indices: 64458909--64459003 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
64458899 TCCTCAAAAG
* * * * *
64458909 GGTCTTACACGAAATC-GATTAACGATGCCAATGTCCTAGACCT
1 GGTCTTACACGAAATCTCAAT-ACAATGCCAATGTCCCAGACAT
*
64458952 GGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCTCAATACAATGCCAATGTCCCAGACAT
*
64458995 GATCTTACA
1 GGTCTTACA
64459004 TGTAATCACA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 42 0.95
44 2 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATCTCAATACAATGCCAATGTCCCAGACAT
Found at i:64464152 original size:46 final size:46
Alignment explanation
Indices: 64464100--64464271 Score: 206
Period size: 46 Copynumber: 3.7 Consensus size: 46
64464090 AACCCGCCCC
* * * *
64464100 TAAGTGAACTCGGACTCAAATCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
*
64464146 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTACATCCA
* * * *
64464194 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
64464239 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
64464272 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTACATCCA
Found at i:64464217 original size:93 final size:93
Alignment explanation
Indices: 64464105--64464275 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
64464095 GCCCCTAAGT
* * **
64464105 GAACTCGGACTCAAATCAACGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
64464170 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
64464198 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
64464263 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64464276 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64468012 original size:20 final size:21
Alignment explanation
Indices: 64467974--64468012 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
64467964 AATGGTCATG
*
64467974 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
*
64467995 GATGA-TTACGAGTCACTT
1 GATGATTTAAGAGTCACTT
64468013 GTTGTTTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:64468614 original size:28 final size:28
Alignment explanation
Indices: 64468517--64468608 Score: 157
Period size: 28 Copynumber: 3.3 Consensus size: 28
64468507 ATTGCATGAC
*
64468517 TATGAATGTGATTGGGCCCGACGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
* *
64468545 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
64468573 TATGAATGTGATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCCGATGGGCCA
64468601 TATGAATG
1 TATGAATG
64468609 AAATTGCACC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCCGATGGGCCA
Found at i:64469869 original size:17 final size:18
Alignment explanation
Indices: 64469836--64469869 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64469826 TTTAAAGAAG
64469836 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
64469854 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
64469870 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:64471583 original size:42 final size:43
Alignment explanation
Indices: 64471528--64471625 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
64471518 GATTTGAAAT
*
64471528 TTACGTGTAAGACCATGTCTAGGACA-TCGACATCG-TATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGT-GACATCGATATTTGA
* * * * * *
64471570 TTTCATGTAAGACCCTGTCTGGGATAGTGGCATTGATATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
64471613 TTACATGTAAGAC
1 TTACATGTAAGAC
64471626 TACGTCAGGG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 26 0.57
43 20 0.43
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGTGACATCGATATTTGA
Found at i:64484137 original size:17 final size:17
Alignment explanation
Indices: 64484115--64484148 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
64484105 CCACATCACT
64484115 TAGACCAATTTAAATGA
1 TAGACCAATTTAAATGA
64484132 TAGACCAATTTAAATGA
1 TAGACCAATTTAAATGA
64484149 CCAAAAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29
Consensus pattern (17 bp):
TAGACCAATTTAAATGA
Found at i:64486991 original size:43 final size:43
Alignment explanation
Indices: 64486889--64486979 Score: 123
Period size: 43 Copynumber: 2.1 Consensus size: 43
64486879 TCCCAGACGT
* * * *
64486889 GGTCTTACATGTAATCAAATATCAATGCCATTGTCCTAGATAG
1 GGTCTTACACGAAATCAAATATCAACGCCAATGTCCTAGATAG
64486932 GGTCTTACACGAAATCAAATA-CAACGCCAATGTTCC-AGATAG
1 GGTCTTACACGAAATCAAATATCAACGCCAATG-TCCTAGATAG
64486974 GGTCTT
1 GGTCTT
64486980 GCACATAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 21 0.49
43 22 0.51
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCAACGCCAATGTCCTAGATAG
Found at i:64494679 original size:53 final size:53
Alignment explanation
Indices: 64494592--64494904 Score: 347
Period size: 53 Copynumber: 5.8 Consensus size: 53
64494582 TTCATTTTTA
* * * * *
64494592 AACTTACCATTTCCATGTCTTGAGATGGTATTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
64494645 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
64494698 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
* * * *
64494751 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
** * * * * * * * * * * *
64494805 TAGTTTATCAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTTCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
* * * * * *
64494860 AACTTACTAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTT
64494905 AAACCCTAAT
Statistics
Matches: 223, Mismatches: 35, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
53 149 0.67
54 35 0.16
55 39 0.17
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
Found at i:64494692 original size:29 final size:29
Alignment explanation
Indices: 64494660--64494747 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
64494650 ACCATTGCCA
64494660 TGCCTTGACATGGTCTTACGTGGTATCCT
1 TGCCTTGACATGGTCTTACGTGGTATCCT
** * * * *
64494689 TGCCTT---ATGAACTCACCAT--T-GCCA
1 TGCCTTGACATGGTCTTA-CGTGGTATCCT
64494713 TGCCTTGACATGGTCTTACGTGGTATCCT
1 TGCCTTGACATGGTCTTACGTGGTATCCT
64494742 TGCCTT
1 TGCCTT
64494748 ATGAACTCAC
Statistics
Matches: 40, Mismatches: 12, Indels: 14
0.61 0.18 0.21
Matches are distributed among these distances:
24 8 0.20
25 1 0.03
26 8 0.20
27 8 0.20
28 1 0.03
29 14 0.35
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.36
Consensus pattern (29 bp):
TGCCTTGACATGGTCTTACGTGGTATCCT
Found at i:64497425 original size:43 final size:43
Alignment explanation
Indices: 64497359--64497522 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
64497349 AACTCATACA
* * *
64497359 ATGCCA-TCGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCACT-GTCCCAGACATGGTCTTACATGAAATCAAATATCG
* * *
64497402 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATA-CGG
1 ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATC-G
* * *
64497445 CAT-CGA-TGTCCCAAACATGGTCTTACATGTAAATCATAA-GTCG
1 -ATGCCACTGTCCCAGACATGGTCTTACATG-AAATCA-AATATCG
64497488 ATGCCAAC-GTCCCAGACATGGTCTTACATGAAATC
1 ATGCC-ACTGTCCCAGACATGGTCTTACATGAAATC
64497523 GCATATCGGA
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 22 0.22
43 48 0.49
44 28 0.29
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACATGAAATCAAATATCG
Found at i:64510071 original size:40 final size:40
Alignment explanation
Indices: 64509993--64510216 Score: 294
Period size: 40 Copynumber: 5.5 Consensus size: 40
64509983 ACCCAAGTAT
* *
64509993 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
64510032 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
64510072 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
64510112 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCACACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
*
64510155 CTTCGGGACTTAGCCCGGATATAGTAACTTA-CACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATGC
64510195 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
64510217 CATCCGAATA
Statistics
Matches: 165, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
39 12 0.07
40 116 0.70
41 1 0.01
43 34 0.21
44 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:64510190 original size:83 final size:80
Alignment explanation
Indices: 64509993--64510216 Score: 292
Period size: 83 Copynumber: 2.8 Consensus size: 80
64509983 ACCCAAGTAT
* * ** *
64509993 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* **
64510057 CACTAGCATGAATGC
66 CACTAACACAAATGC
* *
64510072 CTTCGGGACTTAGCCCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CTTCGGGACTTAGCCCGGATATAGTAACTTA-CACAAATGCCTTCGGGACTTAGCCCGGATATAG
64510136 -CAACTACTCACACAAATGC
65 TC-ACTA---ACACAAATGC
64510155 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGCCTTCGGGACTTAGCCCGGATAT
64510217 CATCCGAATA
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
79 13 0.10
80 47 0.37
83 64 0.51
84 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTACACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAACACAAATGC
Found at i:64520901 original size:26 final size:26
Alignment explanation
Indices: 64520872--64520923 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
64520862 ACCAATGAAA
*
64520872 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
64520898 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
64520924 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:64520946 original size:104 final size:103
Alignment explanation
Indices: 64520633--64521001 Score: 607
Period size: 103 Copynumber: 3.6 Consensus size: 103
64520623 TAGCCGTTAT
** *
64520633 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
64520698 AATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
64520736 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
64520801 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
64520839 TGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
64520903 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATA
* * * **
64520943 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
64521002 TTTATATACA
Statistics
Matches: 253, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
103 184 0.73
104 68 0.27
105 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
Found at i:64521363 original size:29 final size:29
Alignment explanation
Indices: 64521330--64521393 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
64521320 TAATCCACCA
64521330 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
64521359 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
64521389 CCCAA
1 CCCAA
64521394 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:64521367 original size:30 final size:30
Alignment explanation
Indices: 64521337--64521393 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64521327 CCACCCAACT
64521337 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
64521366 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
64521394 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:64530473 original size:31 final size:31
Alignment explanation
Indices: 64530417--64530491 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 31
64530407 AATCATTGGC
* * ** *
64530417 TAATGGAAAGGGATAGCTTTGGCTATGAAAT
1 TAATGAAAAGGGATAGCCTCAGCTATCAAAT
*
64530448 TAATGAAAAGGGATAGCCTCAGCTATCAAGT
1 TAATGAAAAGGGATAGCCTCAGCTATCAAAT
*
64530479 T-GTGAAAAGGGAT
1 TAATGAAAAGGGAT
64530492 GGTGAAGACC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 11 0.30
31 26 0.70
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.25
Consensus pattern (31 bp):
TAATGAAAAGGGATAGCCTCAGCTATCAAAT
Found at i:64530582 original size:90 final size:90
Alignment explanation
Indices: 64530418--64530606 Score: 240
Period size: 90 Copynumber: 2.1 Consensus size: 90
64530408 ATCATTGGCT
* * * * * * * *
64530418 AATGGAAAGGGATAGCTTTGGCTATGAAATTAATGAAAAGGGATAGCCTCAGCTATCAAGTTGTG
1 AATGAAAAGAGATAGCTTCGGATATGAAATTAATGAAAAAGGATAGCCTCAGCTACCAAATTATG
64530483 AAAAGGGATGGTGAAGACCATCAAAC
66 AAAAGGGATGGTGAAGACCATC-AAC
*
64530509 AATGAAAAGAGATAGCTTCGGATATTG-AATT-ATGAAAAAGGATAGCTTC-GACTACCAAATTA
1 AATGAAAAGAGATAGCTTCGGATA-TGAAATTAATGAAAAAGGATAGCCTCAG-CTACCAAATTA
*
64530571 TGAAAAGGGATGGTGACGACCATCAAC
64 TGAAAAGGGATGGTGAAGACCATCAAC
64530598 AATGAAAAG
1 AATGAAAAG
64530607 GGATGGTGAC
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
89 13 0.15
90 47 0.55
91 24 0.28
92 2 0.02
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (90 bp):
AATGAAAAGAGATAGCTTCGGATATGAAATTAATGAAAAAGGATAGCCTCAGCTACCAAATTATG
AAAAGGGATGGTGAAGACCATCAAC
Found at i:64530635 original size:30 final size:30
Alignment explanation
Indices: 64530564--64530637 Score: 116
Period size: 29 Copynumber: 2.5 Consensus size: 30
64530554 CTTCGACTAC
*
64530564 CAAATTATGAAAAGGGATGGTGACGACCAT
1 CAAATTATGAAAAGGGATGGTGACGACAAT
64530594 CAACA--ATGAAAAGGGATGGTGACGACAAT
1 CAA-ATTATGAAAAGGGATGGTGACGACAAT
64530623 CAAATTATGAAAAGG
1 CAAATTATGAAAAGG
64530638 CATAGCTTCG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
28 1 0.03
29 26 0.65
30 12 0.30
31 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.26, T:0.18
Consensus pattern (30 bp):
CAAATTATGAAAAGGGATGGTGACGACAAT
Found at i:64530644 original size:89 final size:89
Alignment explanation
Indices: 64530444--64530664 Score: 243
Period size: 89 Copynumber: 2.4 Consensus size: 89
64530434 TTTGGCTATG
* * *
64530444 AAATTAATGAAAAGGGATAGCCTC-AGCTATCAAGTTGTGAAAAGGGATGGTGAAGACCATCAAA
1 AAATT-ATGAAAA-GGATAGCTTCGA-CTATCAAATTATGAAAAGGGATGGTGAAGACCATCAAA
* * *
64530508 CAATGAAAAGAGATAGCTTCGGATATT
63 CAATGAAAAGAGATAGCTACGGAAATC
* * *
64530535 GAATTATGAAAAAGGATAGCTTCGACTACCAAATTATGAAAAGGGATGGTGACGACCATC-AACA
1 AAATTATG-AAAAGGATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGAAGACCATCAAACA
* *
64530599 ATGAAAAGGGAT-GGTGAC-GACAATC
65 ATGAAAAGAGATAGCT-ACGGA-AATC
*
64530624 AAATTATGAAAAGGCATAGCTTCGGCTATCAAATTATGAAA
1 AAATTATGAAAAGG-ATAGCTTCGACTATCAAATTATGAAA
64530665 TAACTTAGCT
Statistics
Matches: 111, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
88 10 0.09
89 49 0.44
90 43 0.39
91 9 0.08
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (89 bp):
AAATTATGAAAAGGATAGCTTCGACTATCAAATTATGAAAAGGGATGGTGAAGACCATCAAACAA
TGAAAAGAGATAGCTACGGAAATC
Found at i:64530655 original size:30 final size:30
Alignment explanation
Indices: 64530423--64530664 Score: 147
Period size: 30 Copynumber: 8.1 Consensus size: 30
64530413 TGGCTAATGG
* * *
64530423 AAAGGGATAGCTTTGGCTATGAAATTAATGA
1 AAAGGGATAGCTTCGACTATCAAATT-ATGA
* * *
64530454 AAAGGGATAGCCTC-AGCTATCAAGTTGTGA
1 AAAGGGATAGCTTCGA-CTATCAAATTATGA
* ** * **
64530484 AAAGGGAT-GGTGAAGACCATCAAACAATGA
1 AAAGGGATAGCT-TCGACTATCAAATTATGA
* **
64530514 AAAGAGATAGCTTCGGA-TATTGAATTATGA
1 AAAGGGATAGCTTC-GACTATCAAATTATGA
* *
64530544 AAAAGGATAGCTTCGACTACCAAATTATGA
1 AAAGGGATAGCTTCGACTATCAAATTATGA
* * *
64530574 AAAGGGAT-GGTGACGACCATCAACA--ATGA
1 AAAGGGATAGCT-TCGACTATCAA-ATTATGA
* * *
64530603 AAAGGGAT-GGTGACGACAATCAAATTATGA
1 AAAGGGATAGCT-TCGACTATCAAATTATGA
* *
64530633 AAAGGCATAGCTTCGGCTATCAAATTATGA
1 AAAGGGATAGCTTCGACTATCAAATTATGA
64530663 AA
1 AA
64530665 TAACTTAGCT
Statistics
Matches: 160, Mismatches: 40, Indels: 23
0.72 0.18 0.10
Matches are distributed among these distances:
28 1 0.01
29 31 0.19
30 100 0.62
31 28 0.17
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (30 bp):
AAAGGGATAGCTTCGACTATCAAATTATGA
Found at i:64530674 original size:30 final size:30
Alignment explanation
Indices: 64530621--64530683 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
64530611 GGTGACGACA
* *
64530621 ATCAAATTATGAAAAGGCATAGCTTCGGCT
1 ATCAAATTATGAAAAGACATAGCTTCAGCT
*
64530651 ATCAAATTATGAAATA-ACTTAGCTTCAGCT
1 ATCAAATTATGAAA-AGACATAGCTTCAGCT
64530681 ATC
1 ATC
64530684 GATTGGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (30 bp):
ATCAAATTATGAAAAGACATAGCTTCAGCT
Found at i:64539871 original size:27 final size:27
Alignment explanation
Indices: 64539833--64539885 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
64539823 GTGGATAAGT
64539833 TGTAGAATTACCGAAATACCCCTGTAA
1 TGTAGAATTACCGAAATACCCCTGTAA
64539860 TGTAGAATTACCGAAATACCCCTGTA
1 TGTAGAATTACCGAAATACCCCTGTA
64539886 GCATAGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (27 bp):
TGTAGAATTACCGAAATACCCCTGTAA
Found at i:64539892 original size:27 final size:27
Alignment explanation
Indices: 64539835--64539896 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
64539825 GGATAAGTTG
**
64539835 TAGAATTACCGAAATACCCCTGTAATG
1 TAGAATTACCGAAATACCCCTGTAACA
*
64539862 TAGAATTACCGAAATACCCCTGTAGCA
1 TAGAATTACCGAAATACCCCTGTAACA
64539889 TAGAATTA
1 TAGAATTA
64539897 TTGAATTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAACA
Found at i:64547168 original size:28 final size:28
Alignment explanation
Indices: 64547067--64547170 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 28
64547057 CTTCGGCTAT
* *
64547067 GTATGGCATTTAGTGTGTGAGATACTGA
1 GTATGGCACTTAGTGTGCGAGATACTGA
* *
64547095 GTGTGGCACTTAGTGTGCGAGATACCGA
1 GTATGGCACTTAGTGTGCGAGATACTGA
* * *
64547123 GTGTGGCACTTAATGTGC-AGGATATTGA
1 GTATGGCACTTAGTGTGCGA-GATACTGA
64547151 GTATGGCACTTAGTGTGCGA
1 GTATGGCACTTAGTGTGCGA
64547171 AGCATTGAGT
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.23, C:0.12, G:0.34, T:0.31
Consensus pattern (28 bp):
GTATGGCACTTAGTGTGCGAGATACTGA
Found at i:64549970 original size:20 final size:20
Alignment explanation
Indices: 64549924--64549970 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
64549914 AGCTTGTTTC
*
64549924 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
64549944 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
64549964 CAGCTCA
1 CAGCTCA
64549971 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:64552626 original size:48 final size:47
Alignment explanation
Indices: 64552547--64552652 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
64552537 GAGTGTCATG
*
64552547 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
64552595 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
64552643 GAAAAAGAAA
1 GAAAAAGAAA
64552653 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:64554367 original size:20 final size:20
Alignment explanation
Indices: 64554321--64554367 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
64554311 AGCTTGTTTC
*
64554321 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
64554341 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
64554361 CAGCTCA
1 CAGCTCA
64554368 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:64558623 original size:56 final size:56
Alignment explanation
Indices: 64558552--64558688 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
64558542 TCCCAGACAG
*
64558552 GGTCTTACTCACACACATATATCGGAGTCAAATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCAAATATCGATGCCAACGTATAAAACGT
* * *
64558608 GGTCTTACTCGCACACATATATCGAAGTCAGATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCACACACATATATCGAAGTCAAATATCGATGCCAACGTATAAAACGT
64558664 GGTCTTACTCACACACATATATCGA
1 GGTCTTACTCACACACATATATCGA
64558689 TCCCATGGTC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCAAATATCGATGCCAACGTATAAAACGT
Found at i:64560481 original size:40 final size:40
Alignment explanation
Indices: 64560437--64560617 Score: 269
Period size: 40 Copynumber: 4.5 Consensus size: 40
64560427 GCTACTAGCT
64560437 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
64560477 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
64560517 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * * *
64560557 CAAATGCCTTCGGG-CTTAGCCCAAAATT-T-TTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCC--GGTTATAGTAACTCGCA
64560596 CAAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
64560618 GGGGTATCAA
Statistics
Matches: 131, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 29 0.22
40 101 0.77
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:64562872 original size:43 final size:43
Alignment explanation
Indices: 64562825--64562981 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
64562815 TATCTGTTCT
* * *
64562825 CGTGTAAGACCATGTCTGGGACGTTGGCATTGATATGTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
* *
64562868 CGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
* * *
64562909 TGTGTAAGACCCTGTCTGGGACAATGGCATCGATATATGA-TA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
* * * *
64562951 GCATGTAATACCACGTCTGGGACGTTGGCAT
1 -CGTGTAAGACCATGTCTGGGACATTGGCAT
64562982 TGTACGGTAT
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 29 0.31
42 14 0.15
43 52 0.55
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATTA
Found at i:64565217 original size:21 final size:22
Alignment explanation
Indices: 64565191--64565234 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
64565181 TCATTCATTT
*
64565191 ATATTTCATTTGCACATA-ATC
1 ATATTTCATTTCCACATACATC
64565212 ATATTTCATTTCCACATACATC
1 ATATTTCATTTCCACATACATC
64565234 A
1 A
64565235 CAATACATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (22 bp):
ATATTTCATTTCCACATACATC
Found at i:64565661 original size:28 final size:28
Alignment explanation
Indices: 64565625--64565703 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
64565615 GAATCATTCG
64565625 ATATTTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
64565653 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
64565681 ATATTTCGTACACTGAGTGTCAT
1 ATATTTCGCACACTAAGTGTCAT
64565704 ATTTGATTGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:64567528 original size:32 final size:30
Alignment explanation
Indices: 64567492--64567559 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
64567482 ATCAGTTCAC
**
64567492 ATATTTTAAAAATGGAAAAATAATATTAAATT
1 ATATTTTAAAAACAG-AAAA-AATATTAAATT
*
64567524 ATATTTTAAACACAGAAAAAATATTAAATT
1 ATATTTTAAAAACAGAAAAAATATTAAATT
64567554 AT-TTTT
1 ATATTTT
64567560 CTGACTCAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 4 0.12
30 13 0.39
31 4 0.12
32 12 0.36
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.40
Consensus pattern (30 bp):
ATATTTTAAAAACAGAAAAAATATTAAATT
Found at i:64572353 original size:13 final size:13
Alignment explanation
Indices: 64572335--64572359 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64572325 ATAACTTTTA
64572335 TTTATTTATTGTT
1 TTTATTTATTGTT
64572348 TTTATTTATTGT
1 TTTATTTATTGT
64572360 AATATTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
TTTATTTATTGTT
Found at i:64573356 original size:214 final size:214
Alignment explanation
Indices: 64572987--64573628 Score: 1275
Period size: 214 Copynumber: 3.0 Consensus size: 214
64572977 TGGCAATTTC
64572987 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
1 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
64573052 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
66 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
64573117 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
131 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
64573182 TGCTGGTTCCATAAGGCAA
196 TGCTGGTTCCATAAGGCAA
64573201 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
1 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
64573266 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
66 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
*
64573331 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGCAGAG
131 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
64573396 TGCTGGTTCCATAAGGCAA
196 TGCTGGTTCCATAAGGCAA
64573415 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
1 ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
64573480 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
66 TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
64573545 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
131 ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
64573610 TGCTGGTTCCATAAGGCAA
196 TGCTGGTTCCATAAGGCAA
64573629 CATCTTTGCA
Statistics
Matches: 426, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 426 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (214 bp):
ATTCATAAGACATGTATGATGTATGCTAGTGTAGACAAACTAACCCTTAACATGAAAACAATTGC
TTGGTAAATGCATGATACTTTCTGCTTTGTCTCATTTTTCTTTTTGTACAAGTATAGAATGAATC
ATAAGATCTGAATTTCTGCAATATTCTCCCCTAACTTAACTAGCAGCCACTAACAACCAGAAGAG
TGCTGGTTCCATAAGGCAA
Found at i:64577256 original size:14 final size:14
Alignment explanation
Indices: 64577237--64577273 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
64577227 GTTTGGTTTA
64577237 GAGGAAAATTCGAG
1 GAGGAAAATTCGAG
* *
64577251 GAGGAAATTTTGAG
1 GAGGAAAATTCGAG
64577265 GAGGAAAAT
1 GAGGAAAAT
64577274 AAATAATCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.43, C:0.03, G:0.35, T:0.19
Consensus pattern (14 bp):
GAGGAAAATTCGAG
Done.