Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 199 of 362
Found at i:66971399 original size:9 final size:9
Alignment explanation
Indices: 66971387--66971417 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
66971377 GAATTATTCG
66971387 AATCGAGTT
1 AATCGAGTT
66971396 AATCGAGTT
1 AATCGAGTT
*
66971405 AATCGAATT
1 AATCGAGTT
66971414 AATC
1 AATC
66971418 TAATCAACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (9 bp):
AATCGAGTT
Found at i:66971490 original size:9 final size:9
Alignment explanation
Indices: 66971476--66971509 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
66971466 ATTCTCAAAT
*
66971476 TCGAATAAC
1 TCGAATAAA
*
66971485 TCGAATAAT
1 TCGAATAAA
66971494 TCGAATAAA
1 TCGAATAAA
66971503 TCGAATA
1 TCGAATA
66971510 TAAACAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (9 bp):
TCGAATAAA
Found at i:66971496 original size:18 final size:18
Alignment explanation
Indices: 66971473--66971509 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
66971463 TGAATTCTCA
*
66971473 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
66971491 AATTCGAATAAATCGAAT
1 AATTCGAATAAATCGAAT
66971509 A
1 A
66971510 TAAACAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.27
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:66981206 original size:16 final size:15
Alignment explanation
Indices: 66981180--66981213 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
66981170 ATTTTCAGTG
*
66981180 TTTATTCTGTGTAAA
1 TTTATTCTGTGAAAA
66981195 TTTATGTCTGTGAAAA
1 TTTAT-TCTGTGAAAA
66981211 TTT
1 TTT
66981214 CGTGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53
Consensus pattern (15 bp):
TTTATTCTGTGAAAA
Found at i:66991835 original size:28 final size:28
Alignment explanation
Indices: 66991803--66991886 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
66991793 AACTCCGATC
66991803 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
66991831 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
66991853 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
66991881 ACGTGT
1 ACGTGT
66991887 TCTGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:66991872 original size:50 final size:49
Alignment explanation
Indices: 66991699--66991930 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
66991689 TCTATTGTAA
* *
66991699 GGTCACATGCGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * * *
66991748 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTCC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-T
* * * * **
66991799 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
66991848 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTTCTGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
66991898 GGTCACATGTGAAATACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
66991931 TGCGTACCAG
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 70 0.46
50 44 0.29
51 37 0.25
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:66993847 original size:12 final size:12
Alignment explanation
Indices: 66993830--66993858 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
66993820 GTACTCAAAG
66993830 AAACGATCACAA
1 AAACGATCACAA
66993842 AAACGATCACAA
1 AAACGATCACAA
66993854 AAACG
1 AAACG
66993859 TATAAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.24, G:0.10, T:0.07
Consensus pattern (12 bp):
AAACGATCACAA
Found at i:66994999 original size:42 final size:42
Alignment explanation
Indices: 66994952--66995106 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
66994942 TACCATACCA
* *
66994952 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCGTATCG
*
66994994 ATGCCAATAGCCCA-ACTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAAGTCTCGTATCG
* * *
66995037 ATGCCATATACCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
* *
66995079 ATGTCATATCCCAGATATGATCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
66995107 ATAGTCTTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
42 62 0.63
43 36 0.36
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCGTATCG
Found at i:67001286 original size:30 final size:30
Alignment explanation
Indices: 67001252--67001312 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67001242 TTCCCGAGCC
67001252 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
67001282 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
67001312 T
1 T
67001313 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:67002094 original size:68 final size:67
Alignment explanation
Indices: 67002022--67002171 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
67002012 CATCATGTGT
* * * *
67002022 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
67002084 ATGTAG
62 ATGTAG
** * *
67002090 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
67002155 AG
66 AG
67002157 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
67002172 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:67002127 original size:64 final size:64
Alignment explanation
Indices: 67002046--67002229 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
67002036 AGACATTATG
* *
67002046 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
67002110 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
67002175 AA
63 AA
* * * *
67002177 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
67002230 GAACTATATG
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:67005406 original size:13 final size:13
Alignment explanation
Indices: 67005388--67005414 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67005378 CGTGTTGGTG
67005388 CACACGGCCGTGT
1 CACACGGCCGTGT
67005401 CACACGGCCGTGT
1 CACACGGCCGTGT
67005414 C
1 C
67005415 TGGCATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGCCGTGT
Found at i:67010040 original size:40 final size:40
Alignment explanation
Indices: 67009985--67010202 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
67009975 CAGATGATAA
* * *
67009985 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
67010025 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67010065 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
67010105 GCGGGCTAAGTCCCGAATGTATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
67010145 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
67010185 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67010203 TACCTGGCTT
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 16 0.10
40 140 0.90
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67031119 original size:34 final size:34
Alignment explanation
Indices: 67031081--67031148 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
67031071 TGTTTTTGAG
*
67031081 ATTGTCAGATTATATGATGTGCTAGTTTCTGCTA
1 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
67031115 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
1 ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
67031149 TGTCTGATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (34 bp):
ATTGTCAAATTATATGATGTGCTAGTTTCTGCTA
Found at i:67034707 original size:40 final size:40
Alignment explanation
Indices: 67034630--67034926 Score: 449
Period size: 40 Copynumber: 7.5 Consensus size: 40
67034620 AAACCAAGTA
* * * *
67034630 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67034669 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67034709 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67034749 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67034789 CCTTCGGGACTTAGCCCGGATATAGTAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67034829 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67034869 CCTTCGGG-CTTAGCCTGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67034908 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67034927 TTATCATCGA
Statistics
Matches: 238, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.00
39 47 0.20
40 190 0.80
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67045029 original size:47 final size:47
Alignment explanation
Indices: 67044966--67045369 Score: 564
Period size: 47 Copynumber: 8.6 Consensus size: 47
67044956 CCCTTCGGGA
* * * *
67044966 CTTATCACATTTATACACT-TCCACATCCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
67045013 CTTATCACATATATACA-CTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67045059 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
67045106 CTTATCACACATACACATGTTCACATTCATCACATTGGACATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
67045153 CTTATCACACATACACATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67045200 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67045247 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67045294 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
67045343 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
67045370 TATTCAAATA
Statistics
Matches: 326, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
46 40 0.12
47 244 0.75
49 41 0.13
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:67045138 original size:25 final size:25
Alignment explanation
Indices: 67045109--67045186 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
67045099 ATTCGGCCTT
67045109 ATCACACATACACATGTTCACATTC
1 ATCACACATACACATGTTCACATTC
* ** * *
67045134 ATCACA-TTGGACA--TTCGGCCTT-
1 ATCACACATACACATGTTC-ACATTC
67045156 ATCACACATACACATGTTCACATTC
1 ATCACACATACACATGTTCACATTC
67045181 ATCACA
1 ATCACA
67045187 TTGGTCATTC
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.18
24 7 0.18
25 15 0.39
ACGTcount: A:0.33, C:0.31, G:0.08, T:0.28
Consensus pattern (25 bp):
ATCACACATACACATGTTCACATTC
Found at i:67045948 original size:18 final size:19
Alignment explanation
Indices: 67045913--67045948 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
67045903 AAATTTTATC
*
67045913 TTATAACATTTTTGTAAAT
1 TTATAACATTTTTCTAAAT
67045932 TTATAACA-TTTTCTAAA
1 TTATAACATTTTTCTAAA
67045949 ACAGAACAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (19 bp):
TTATAACATTTTTCTAAAT
Found at i:67046875 original size:56 final size:56
Alignment explanation
Indices: 67046808--67046927 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
67046798 TATTAGTTTA
67046808 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
67046864 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
67046920 TTGCCCAT
1 TTGCCCAT
67046928 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:67048252 original size:40 final size:40
Alignment explanation
Indices: 67048195--67048471 Score: 347
Period size: 40 Copynumber: 6.9 Consensus size: 40
67048185 CGAATACACG
* * * * *
67048195 TCACCAGCATGATTGCTCTTCGGGACCTAGCCTGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
** * * ** * *
67048235 AGACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
67048275 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
67048315 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
67048355 TCACTAGCATGAATACTCTTCGGGACTTAACCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
67048395 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
67048435 TCACTAGCATGAATGCTCTTTGGGACTTAACCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
67048472 TTAGTAACTC
Statistics
Matches: 208, Mismatches: 29, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:67048496 original size:120 final size:119
Alignment explanation
Indices: 67048240--67048591 Score: 327
Period size: 120 Copynumber: 2.9 Consensus size: 119
67048230 ATATAAGACC
* * * * * *
67048240 AGCACGAATGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG
1 AGCACCAATACTCTTC-GGGCTTAACCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
* *
67048305 CCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACACATCACT
65 CCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAACCCGGACACATAACT
** *
67048360 AGCATGAATACTCTTCGGGACTTAACCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAG
1 AGCACCAATACTCTTCGGG-CTTAACCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG
* * * ***
67048425 CCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAACCCGGATTTAGTAACT
65 CCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAACCCGGACACA-TAACT
* * * * * * * *
67048481 CGCACCAATGC-CTTCGGGCTTAGCCCGGAATTA-GTAACTCGCACAAATGC-CTTCGGATCTTA
1 AGCACCAATACTCTTCGGGCTTAACCCGG-A-TACATCACTAGCACGAATGCTCTTCGGAACTTA
* ** * * *
67048543 GTCCGGATATTGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGACA
64 GCCCGGATA-CATCAC-TAGCACGAATGCTCTTCGGAACTTAACCCGGACA
67048592 TCATTCGAAT
Statistics
Matches: 191, Mismatches: 35, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
119 48 0.25
120 125 0.65
121 18 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AGCACCAATACTCTTCGGGCTTAACCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGC
CCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAACCCGGACACATAACT
Found at i:67048515 original size:39 final size:40
Alignment explanation
Indices: 67048446--67048589 Score: 152
Period size: 40 Copynumber: 3.6 Consensus size: 40
67048436 CACTAGCATG
* * *
67048446 AATGCTCTTTGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGC-CTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
*
67048487 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * *
67048526 AATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCACC
*
67048566 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
67048590 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
38 2 0.02
39 33 0.38
40 38 0.43
41 15 0.17
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:67050934 original size:47 final size:47
Alignment explanation
Indices: 67050871--67051275 Score: 566
Period size: 47 Copynumber: 8.6 Consensus size: 47
67050861 CCCTTCGGGA
* * * *
67050871 CTTATCACATTTATACACT-TCCACATCCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
67050918 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
67050965 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67051012 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67051059 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67051106 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67051153 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * * *
67051200 CTTATCTCATATATATACACT-TTCACAGTCATCACATCGGCCATTAGGC
1 CTTA--TCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
67051249 CTTATCACATATATACACT-TTCACATT
1 CTTATCACATATATACA-TGTTCACATT
67051276 TATTCAAATA
Statistics
Matches: 328, Mismatches: 26, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 287 0.88
49 39 0.12
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:67051125 original size:141 final size:141
Alignment explanation
Indices: 67050892--67051275 Score: 628
Period size: 141 Copynumber: 2.7 Consensus size: 141
67050882 TATACACTTC
* *
67050892 CACATCCATCGCATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
67050957 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
67051022 ATACACATGTT
131 ATACACATGTT
* *
67051033 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGG
67051097 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
65 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
67051162 CATACACATGTT
130 CATACACATGTT
* * *
67051174 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATATACACTTTCACAGTCATCACATCG
1 CACATTCATCACATTGGCCATTCGGCCTTA--TCACATATATACACTTTCACATTCATCACATTG
* * *
67051239 GCCATTAGGCCTTATCACATATATACACT-TTCACATT
64 GCCATTCGGCCTTATCTCATATATGCA-TGTTCACATT
67051276 TATTCAAATA
Statistics
Matches: 226, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
140 1 0.00
141 165 0.73
143 58 0.26
144 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (141 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACACATGTT
Found at i:67052790 original size:56 final size:56
Alignment explanation
Indices: 67052723--67052842 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
67052713 TATTAGTTTA
67052723 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
67052779 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
67052835 TTGCCCAT
1 TTGCCCAT
67052843 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:67053939 original size:49 final size:49
Alignment explanation
Indices: 67053883--67054114 Score: 311
Period size: 49 Copynumber: 4.7 Consensus size: 49
67053873 CTGGTATGCA
*
67053883 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* ** * *
67053932 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
67053982 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* *
67054033 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
*
67054082 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
67054115 TCACAATAGA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 72 0.46
50 48 0.30
51 38 0.24
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:67054111 original size:100 final size:99
Alignment explanation
Indices: 67053883--67054114 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 99
67053873 CTGGTATGCA
* * *
67053883 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* * *
67053948 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACAATCCGATACACG
* * *
67053982 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* * *
67054047 TAGTACTACACATGCGACC-AATAATCCGGTACACG
64 TAGTACTACACACGCGACCTAACAATCCGATACACG
67054082 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
67054115 TCACAATAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.25
100 46 0.39
101 42 0.36
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCCGATACACG
Found at i:67054391 original size:27 final size:27
Alignment explanation
Indices: 67054361--67054414 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
67054351 TCATACAACC
* *
67054361 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
67054388 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
67054415 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:67057708 original size:29 final size:29
Alignment explanation
Indices: 67057666--67057723 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
67057656 TATCTTCTAT
* *
67057666 TAGGAATAGCGTTTTGATATGATAATAAA
1 TAGGAATAACGTTTCGATATGATAATAAA
67057695 TAGGAATAACGTTTCGATATGATAATAAA
1 TAGGAATAACGTTTCGATATGATAATAAA
67057724 AATGGGTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (29 bp):
TAGGAATAACGTTTCGATATGATAATAAA
Found at i:67069283 original size:19 final size:19
Alignment explanation
Indices: 67069245--67069282 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
67069235 TAGACTCATA
67069245 TATATATTTACTAAATTTT
1 TATATATTTACTAAATTTT
67069264 TATATATTTACT-AATTTT
1 TATATATTTACTAAATTTT
67069282 T
1 T
67069283 TTCTAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TATATATTTACTAAATTTT
Found at i:67070483 original size:93 final size:93
Alignment explanation
Indices: 67070376--67070546 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
67070366 CGCCCTAAGT
* *
67070376 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67070441 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
67070469 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67070534 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67070547 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67070543 original size:46 final size:46
Alignment explanation
Indices: 67070371--67070543 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
67070361 TAACCCGCCC
* * *
67070371 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
67070417 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
67070465 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
67070510 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67070544 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:67070994 original size:30 final size:30
Alignment explanation
Indices: 67070960--67071019 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67070950 ATTTAATACG
67070960 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67070990 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67071020 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67077985 original size:91 final size:91
Alignment explanation
Indices: 67077876--67078043 Score: 293
Period size: 91 Copynumber: 1.8 Consensus size: 91
67077866 GCCCCTAAGT
* *
67077876 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-CATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACT-GGACTCAACTCAA
67077940 CGAGTTCGGATGCCTAGTTACATTCAC
65 CGAGTTCGGATGCCTAGTTACATTCAC
*
67077967 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
67078032 GAGTTCGGATGC
66 GAGTTCGGATGC
67078044 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 57 0.78
92 16 0.22
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:67078040 original size:45 final size:45
Alignment explanation
Indices: 67077871--67078040 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 45
67077861 AACCCGCCCC
* * *
67077871 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCATCCA
* *
67077916 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCC-A--TCCA
* *
67077962 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-CATCCA
67078008 TAAGTGAACT-GGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67078041 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 57 0.53
46 39 0.36
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCATCCA
Found at i:67078059 original size:45 final size:46
Alignment explanation
Indices: 67077873--67078059 Score: 144
Period size: 45 Copynumber: 4.1 Consensus size: 46
67077863 CCCGCCCCTA
* *
67077873 AGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGT--TCCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-TCAACCATCC-T
*
67077917 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
67077965 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
67078010 AGTGAACT-GGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
67078055 AGTGA
1 AGTGA
67078060 CATGTCACTT
Statistics
Matches: 115, Mismatches: 11, Indels: 32
0.73 0.07 0.20
Matches are distributed among these distances:
43 9 0.08
45 58 0.50
46 36 0.31
47 3 0.03
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:67078489 original size:29 final size:29
Alignment explanation
Indices: 67078457--67078512 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
67078447 ATTTAATACG
67078457 AACTTTGGAAAAATTACACTTTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
67078486 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
67078513 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:67080819 original size:21 final size:21
Alignment explanation
Indices: 67080794--67080840 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
67080784 AGGGGACTAA
* *
67080794 ATGAAAAAGTTGTAAAATTTG
1 ATGAAAAAATTATAAAATTTG
*
67080815 ATGAAAAAATTATAAAATTTT
1 ATGAAAAAATTATAAAATTTG
67080836 ATGAA
1 ATGAA
67080841 TACATGTGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (21 bp):
ATGAAAAAATTATAAAATTTG
Found at i:67082609 original size:46 final size:45
Alignment explanation
Indices: 67082557--67082732 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67082547 GGTTGAGCAT
* *
67082557 CCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
* * * *
67082603 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAGGCAT-C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GGAATGC
*
67082651 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGC
*
67082697 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67082733 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 64 0.58
47 6 0.05
48 29 0.26
49 5 0.05
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGC
Found at i:67082718 original size:94 final size:93
Alignment explanation
Indices: 67082553--67082724 Score: 290
Period size: 94 Copynumber: 1.8 Consensus size: 93
67082543 GATGGGTTGA
* *
67082553 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67082618 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
67082646 GCATCCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GCAT-CCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67082711 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
67082725 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
93 4 0.05
94 69 0.95
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67091768 original size:27 final size:27
Alignment explanation
Indices: 67091729--67091905 Score: 108
Period size: 27 Copynumber: 6.6 Consensus size: 27
67091719 ATATTGAGCC
* *
67091729 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAACT
* ** *
67091756 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAACT
* * *
67091783 CGCACACTTAGTGCTACATAGTTAGAC-
1 CGCACACTTAGTGCTACACAATCA-ACT
** *** *
67091810 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAACT
* * **
67091837 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAACT
* * *
67091864 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACACAATC-AACT
67091891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67091906 GTACAATTTA
Statistics
Matches: 122, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 118 0.97
28 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAACT
Found at i:67091814 original size:54 final size:55
Alignment explanation
Indices: 67091729--67091905 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 55
67091719 ATATTGAGCC
* * *
67091729 CGCACACTCAGTGCTATACA-A-TCA-ACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAGAC-CGCACACTTAGTGCCACATAGTCAAAT
* * *
67091783 CGCACACTTAGTGCTA-CATAGTT-AGACCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCAGACCGCACACTTAGTGCCACATAGTCAAAT
*** * *
67091837 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAGACCGCACACTTAGTGCCACATAGTCAAAT
67091891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67091906 GTACAATTTA
Statistics
Matches: 102, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
52 2 0.02
53 4 0.04
54 93 0.91
55 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAGACCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67091867 original size:81 final size:81
Alignment explanation
Indices: 67091750--67091904 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
67091740 TGCTATACAA
* *
67091750 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAG-ACCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAACCGCA
67091814 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** * *
67091831 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAACCGCA
67091895 CACTTAGTGC
65 CACTTAGTGC
67091905 TGTACAATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 4 0.06
81 60 0.94
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAACCGCAC
ACTTAGTGCCGCATGG
Found at i:67099862 original size:27 final size:27
Alignment explanation
Indices: 67099832--67100009 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
67099822 ATATTGAGCC
* * *
67099832 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
67099859 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
67099886 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
67099914 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
67099941 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
67099968 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
67099995 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67100010 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:67099925 original size:55 final size:55
Alignment explanation
Indices: 67099832--67100009 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
67099822 ATATTGAGCC
* * *
67099832 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
67099886 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
67099941 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
67099995 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67100010 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:67099971 original size:82 final size:81
Alignment explanation
Indices: 67099853--67100008 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
67099843 TGCTATACAA
* * *
67099853 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
67099918 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
67099935 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
67099999 CACTTAGTGC
65 CACTTAGTGC
67100009 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:67103109 original size:26 final size:26
Alignment explanation
Indices: 67103059--67103109 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
67103049 ATTTCCCTTT
*
67103059 TCTTTTTCTTTCCTTCTTTCTTTCTC
1 TCTTTTTCTTTCCTTCTTTCGTTCTC
*
67103085 TCTTTTTCGTTTCTTTCTTT-GTTCT
1 TCTTTTTC-TTTCCTTCTTTCGTTCT
67103110 TATTCTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.00, C:0.25, G:0.04, T:0.71
Consensus pattern (26 bp):
TCTTTTTCTTTCCTTCTTTCGTTCTC
Found at i:67108943 original size:15 final size:16
Alignment explanation
Indices: 67108923--67108952 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67108913 ATAATAACAA
67108923 TACTTACC-TTTATAC
1 TACTTACCATTTATAC
67108938 TACTTACCATTTATA
1 TACTTACCATTTATA
67108953 TATAATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.47
Consensus pattern (16 bp):
TACTTACCATTTATAC
Found at i:67109638 original size:9 final size:9
Alignment explanation
Indices: 67109624--67109651 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
67109614 ATTCTTTTGT
67109624 TTTATTTTA
1 TTTATTTTA
67109633 TTTATTTTA
1 TTTATTTTA
67109642 TTTATTTTA
1 TTTATTTTA
67109651 T
1 T
67109652 GTTTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTATTTTA
Found at i:67109685 original size:16 final size:15
Alignment explanation
Indices: 67109666--67109698 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
67109656 TATTATGTTT
67109666 TATTATTATATTAATA
1 TATTATTATATT-ATA
67109682 TATTATTATATTATA
1 TATTATTATATTATA
67109697 TA
1 TA
67109699 CTTAAGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TATTATTATATTATA
Found at i:67123812 original size:43 final size:41
Alignment explanation
Indices: 67123746--67123863 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 41
67123736 AGCTCATACA
*
67123746 ATGCCAATGTCCCAAAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACAG-GGTCTTACATGTAATCAAATAT-G
***
67123789 ATGCCACTGTCCCAGACAGGGTCTTACACAAAATCAAATATG
1 ATGCCA-TGTCCCAGACAGGGTCTTACATGTAATCAAATATG
*
67123831 ATGCCGATGTCCCAGACATGGTCTTACATGTAA
1 ATGCC-ATGTCCCAGACAGGGTCTTACATGTAA
67123864 AACATATGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
42 29 0.45
43 34 0.53
44 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (41 bp):
ATGCCATGTCCCAGACAGGGTCTTACATGTAATCAAATATG
Found at i:67123909 original size:86 final size:85
Alignment explanation
Indices: 67123746--67123910 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 85
67123736 AGCTCATACA
* * *
67123746 ATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAAACAAATATCGATGCCACTGTCCCAAACAGGGT
67123811 CTTACACAAAATCAAATATG
66 CTTACACAAAATCAAATATG
* * * *
67123831 ATGCCGATGTCCCAGACATGGTCTTACATGTAAAACATATGTCGATGCCAAC-GTCCCAAAC-GT
1 ATGCCAATGTCCCAAACATGGTCTTACATGT-AAACAAATATCGATGCC-ACTGTCCCAAACAG-
* *
67123894 GGTCTTACTCGAAATCA
63 GGTCTTACACAAAATCA
67123911 CATCAAAAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 29 0.43
86 37 0.54
87 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAAACAAATATCGATGCCACTGTCCCAAACAGGGT
CTTACACAAAATCAAATATG
Found at i:67131498 original size:42 final size:43
Alignment explanation
Indices: 67131407--67131523 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
67131397 ATCCTATACG
* *
67131407 TGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAAACA
* * *
67131450 GGGTCTTACATGAAATTAAATAT-GATGTCGA-TGTCCCAAACA
1 TGGTCTTACATGAAATCAAATATCGATG-CCACTGTCCCAAACA
* *
67131492 TGGTCTTACACGTAAATCATAA-GTCGATGCCA
1 TGGTCTTACATG-AAATCA-AATATCGATGCCA
67131524 GCGTCCTGGA
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
42 24 0.40
43 30 0.50
44 6 0.10
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAAACA
Found at i:67133267 original size:7 final size:7
Alignment explanation
Indices: 67133252--67133285 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
67133242 GGGAATTAGG
*
67133252 GATTCGA
1 GATTTGA
67133259 GATTTGA
1 GATTTGA
67133266 GATTTGA
1 GATTTGA
67133273 GATTTGA
1 GATTTGA
67133280 GATTTG
1 GATTTG
67133286 TGGATTAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (7 bp):
GATTTGA
Found at i:67133475 original size:21 final size:21
Alignment explanation
Indices: 67133426--67133483 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
67133416 TACATGGCCT
67133426 TGTCACAC-GGC-TGTACCCC
1 TGTCACACGGGCATGTACCCC
* *
67133445 TGCGCTACACGGGCATGTACCTC
1 TG-TC-ACACGGGCATGTACCCC
*
67133468 TGTCACACGGCCATGT
1 TGTCACACGGGCATGT
67133484 GTGCTACCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 2 0.06
20 1 0.03
21 15 0.48
22 4 0.13
23 9 0.29
ACGTcount: A:0.17, C:0.36, G:0.24, T:0.22
Consensus pattern (21 bp):
TGTCACACGGGCATGTACCCC
Found at i:67136222 original size:21 final size:21
Alignment explanation
Indices: 67136172--67136254 Score: 96
Period size: 21 Copynumber: 3.9 Consensus size: 21
67136162 GGCTATACTG
* *
67136172 ATCAGGCACTTTATATGTCGT
1 ATCAGGCACCTTATGTGTCGT
*
67136193 ATTTCAGGCACCTTGTGTGTCGT
1 A--TCAGGCACCTTATGTGTCGT
*
67136216 ATCAGGCACCTCATGTGTCGT
1 ATCAGGCACCTTATGTGTCGT
*
67136237 TTCAGGCA-CTTATGTGTC
1 ATCAGGCACCTTATGTGTC
67136255 ATATACTGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
20 9 0.17
21 26 0.49
23 18 0.34
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTTATGTGTCGT
Found at i:67136235 original size:44 final size:41
Alignment explanation
Indices: 67136172--67136254 Score: 103
Period size: 44 Copynumber: 2.0 Consensus size: 41
67136162 GGCTATACTG
* * *
67136172 ATCAGGCACTTTATATGTCGTATTTCAGGCACCTTGTGTGTCGT
1 ATCAGGCACCTCATATGTCG--TTTCAGGCA-CTTATGTGTCGT
*
67136216 ATCAGGCACCTCATGTGTCGTTTCAGGCACTTATGTGTC
1 ATCAGGCACCTCATATGTCGTTTCAGGCACTTATGTGTC
67136255 ATATACTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 9 0.26
42 9 0.26
44 17 0.49
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (41 bp):
ATCAGGCACCTCATATGTCGTTTCAGGCACTTATGTGTCGT
Found at i:67138108 original size:14 final size:14
Alignment explanation
Indices: 67138091--67138121 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67138081 ATACATCCAG
67138091 ATACATACATCTGC
1 ATACATACATCTGC
*
67138105 ATACATTCATCTGC
1 ATACATACATCTGC
67138119 ATA
1 ATA
67138122 TAAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (14 bp):
ATACATACATCTGC
Found at i:67141430 original size:21 final size:21
Alignment explanation
Indices: 67141356--67141433 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
67141346 GCCACTGCGC
* *
67141356 CACACAGGCGTTTGCCTCTGT
1 CACACGGGCGTGTGCCTCTGT
*
67141377 CACACGGGCTTGTGCCTCTGT
1 CACACGGGCGTGTGCCTCTGT
*
67141398 CACACGGGCGTGTGCCTCTAT
1 CACACGGGCGTGTGCCTCTGT
*
67141419 CACACGGCCGTGTGC
1 CACACGGGCGTGTGC
67141434 TACCCTTTAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.13, C:0.35, G:0.28, T:0.24
Consensus pattern (21 bp):
CACACGGGCGTGTGCCTCTGT
Found at i:67144931 original size:14 final size:14
Alignment explanation
Indices: 67144914--67144951 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
67144904 TGAATTGGTG
*
67144914 CATCTGCATTCATA
1 CATCTGCATACATA
67144928 CATCTGCATACATA
1 CATCTGCATACATA
67144942 CATCTGCATA
1 CATCTGCATA
67144952 TAAAGTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.32
Consensus pattern (14 bp):
CATCTGCATACATA
Found at i:67146939 original size:25 final size:25
Alignment explanation
Indices: 67146911--67146958 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67146901 TGAAATTGTG
* *
67146911 ACTGCAATATTTGATTGACTGTTTA
1 ACTGAAATATTTGAGTGACTGTTTA
*
67146936 ACTGAAATATTTGAGTGTCTGTT
1 ACTGAAATATTTGAGTGACTGTT
67146959 GGGACTGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (25 bp):
ACTGAAATATTTGAGTGACTGTTTA
Found at i:67148521 original size:16 final size:13
Alignment explanation
Indices: 67148483--67148573 Score: 53
Period size: 13 Copynumber: 6.5 Consensus size: 13
67148473 TTAATCTTTG
67148483 TATTTTTTATTTT
1 TATTTTTTATTTT
67148496 TATTTCTTTATTATT
1 TATTT-TTTATT-TT
67148511 CTATTATTTTA-TTT
1 -TATT-TTTTATTTT
* *
67148525 TATTTAGTAATATTAT
1 TATTT--T-TTATTTT
67148541 TA-TTTTTATTATT
1 TATTTTTTATT-TT
*
67148554 TCTTTTATTA-TTT
1 TATTTT-TTATTTT
67148567 TATTTTT
1 TATTTTT
67148574 AGCCCCACTA
Statistics
Matches: 61, Mismatches: 6, Indels: 23
0.68 0.07 0.26
Matches are distributed among these distances:
12 6 0.10
13 19 0.31
14 13 0.21
15 10 0.16
16 12 0.20
17 1 0.02
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.74
Consensus pattern (13 bp):
TATTTTTTATTTT
Found at i:67148525 original size:29 final size:28
Alignment explanation
Indices: 67148483--67148566 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 28
67148473 TTAATCTTTG
67148483 TATT-TTTTATTTTTATTTCTTTATTATT
1 TATTATTTTA-TTTTATTTCTTTATTATT
** *
67148511 CTATTATTTTATTTTATTT-AGTAATA-T
1 -TATTATTTTATTTTATTTCTTTATTATT
*
67148538 TATTATTTT-TATTATTTCTTTTATTATT
1 TATTATTTTATTTTATTTC-TTTATTATT
67148566 T
1 T
67148567 TATTTTTAGC
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
25 7 0.16
26 9 0.20
27 5 0.11
28 6 0.14
29 12 0.27
30 5 0.11
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.73
Consensus pattern (28 bp):
TATTATTTTATTTTATTTCTTTATTATT
Found at i:67148526 original size:21 final size:21
Alignment explanation
Indices: 67148502--67148572 Score: 54
Period size: 21 Copynumber: 3.1 Consensus size: 21
67148492 TTTTTATTTC
67148502 TTTATTATTCTATTATTTTAT
1 TTTATTATTCTATTATTTTAT
** *
67148523 TTTATT-TAGTAATATTATTATT
1 TTTATTATTCTATTATT-TTA-T
67148545 TTTATTATTTCTTTTATTATTTTAT
1 TTTATTA-TTC---TATTATTTTAT
67148570 TTT
1 TTT
67148573 TAGCCCCACT
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 7 0.19
21 9 0.24
22 7 0.19
24 1 0.03
25 4 0.11
26 3 0.08
27 6 0.16
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (21 bp):
TTTATTATTCTATTATTTTAT
Found at i:67153260 original size:6 final size:6
Alignment explanation
Indices: 67153249--67153319 Score: 142
Period size: 6 Copynumber: 11.8 Consensus size: 6
67153239 AGTTTATTTC
67153249 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
67153297 TTTTAT TTTTAT TTTTAT TTTTA
1 TTTTAT TTTTAT TTTTAT TTTTA
67153320 CTTGTTTTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:67155122 original size:33 final size:32
Alignment explanation
Indices: 67155077--67155152 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 32
67155067 ACACAGTGCA
*
67155077 TATAGTAACAGTCTAGGCCAAAGCCCTATTCAG
1 TATAGT-ACAGTCTAGGCCAAAGCCCAATTCAG
* *
67155110 TAATAGTACAGTCTGGGCCTAAGCCCAATTCAG
1 T-ATAGTACAGTCTAGGCCAAAGCCCAATTCAG
67155143 TATCAGTACA
1 TAT-AGTACA
67155153 ATGCAGGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 2 0.05
33 31 0.82
34 5 0.13
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (32 bp):
TATAGTACAGTCTAGGCCAAAGCCCAATTCAG
Found at i:67158586 original size:48 final size:48
Alignment explanation
Indices: 67158530--67158754 Score: 342
Period size: 48 Copynumber: 4.7 Consensus size: 48
67158520 TGGATTTTTT
*
67158530 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* *
67158578 ATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCGAAATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
***
67158626 ATCCCATGTAAGACCATGTCTAAAACATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* * *
67158674 ATCCCATGTAAGACCATATCCGGGAAATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
** *
67158722 ATTTCGTGTAAGACCATGTCTGGGACATGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCAT
67158755 CAATATGAGA
Statistics
Matches: 157, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 157 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:67158770 original size:42 final size:42
Alignment explanation
Indices: 67158707--67158799 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 42
67158697 GAAATGGCAT
* * *
67158707 TGGCATCGATATGTGATTTCGTGTAAGACCAT-GTCTGGGAC-A
1 TGGCATCAATATGAGACTTCGTGTAAGACCATAGT-T-GGACTA
67158749 TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
1 TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
67158791 TGGCATCAA
1 TGGCATCAA
67158800 GTAAACGACG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
41 4 0.09
42 40 0.87
43 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
TGGCATCAATATGAGACTTCGTGTAAGACCATAGTTGGACTA
Found at i:67163346 original size:27 final size:26
Alignment explanation
Indices: 67163275--67163348 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
67163265 TGGATAAGTT
*
67163275 GTAGAATTACCGAAATACCCCTGTAG
1 GTAGAATTACCTAAATACCCCTGTAG
* *
67163301 GATAGAAAT-CTTGAAATACCCCTGTAAG
1 G-TAGAATTACCT-AAATACCCCTGT-AG
*
67163329 GTAGAATTACCTAGATACCC
1 GTAGAATTACCTAAATACCC
67163349 TTATGGGGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
26 2 0.05
27 31 0.82
28 5 0.13
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (26 bp):
GTAGAATTACCTAAATACCCCTGTAG
Found at i:67164160 original size:27 final size:26
Alignment explanation
Indices: 67164108--67164167 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
67164098 ACATATATAT
*
67164108 ATATCTGTTCTAGTGGCCTAGCCACA
1 ATATCTGTTCTAGTGACCTAGCCACA
* * *
67164134 ATATCTGTATCTAGTGACTTCGTCACA
1 ATATCTGT-TCTAGTGACCTAGCCACA
67164161 ATATCTG
1 ATATCTG
67164168 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTAGTGACCTAGCCACA
Found at i:67170962 original size:40 final size:40
Alignment explanation
Indices: 67170754--67170958 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
67170744 CGGGCTTTAA
** *
67170754 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** *
67170794 CCAGATATAGTAGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
67170834 CCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67170874 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
67170914 CCGGA-ATTAATCACTAGTACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67170954 CCGGA
1 CCGGA
67170959 ATTATTATCC
Statistics
Matches: 147, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 146 0.99
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67174188 original size:27 final size:27
Alignment explanation
Indices: 67174051--67174195 Score: 155
Period size: 27 Copynumber: 5.4 Consensus size: 27
67174041 TGGAAAAGTT
* *
67174051 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
67174078 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
67174105 TTAGAAATACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
67174132 GTAGAAATCCCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
67174159 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
67174186 GTAAAATTAC
1 GTAGAATTAC
67174196 TAGTTTGCCC
Statistics
Matches: 96, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:67184067 original size:18 final size:17
Alignment explanation
Indices: 67184036--67184069 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
67184026 ATTACGAAAG
*
67184036 TTTAAAAAATTAAAATT
1 TTTAAAAAACTAAAATT
67184053 TTTAAAAAACCTAAAAT
1 TTTAAAAAA-CTAAAAT
67184070 GTTATATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTAAAAAACTAAAATT
Found at i:67184225 original size:27 final size:26
Alignment explanation
Indices: 67184182--67184264 Score: 62
Period size: 27 Copynumber: 3.1 Consensus size: 26
67184172 CGTGGTTCAA
* *
67184182 AAAATTATAAA-ACTTATTGAAAATAT
1 AAAATT-TAAATAATTATTAAAAATAT
*
67184208 AAAATTGTAAATAATTATAAAAAAT-T
1 AAAATT-TAAATAATTATTAAAAATAT
* *
67184234 AAGTAATTTTAATAATTATTTAAAATTAT
1 AA--AATTTAAATAATTA-TTAAAAATAT
67184263 AA
1 AA
67184265 TATTATATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 13 0.29
27 19 0.42
28 10 0.22
29 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.39
Consensus pattern (26 bp):
AAAATTTAAATAATTATTAAAAATAT
Found at i:67184275 original size:18 final size:19
Alignment explanation
Indices: 67184238--67184282 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
67184228 AAAATTAAGT
* *
67184238 AATTTTAATAATTATTTAA
1 AATTATAATAATTATATAA
67184257 AATTATAAT-ATTATATAA
1 AATTATAATAATTATATAA
*
67184275 AAATATAA
1 AATTATAA
67184283 AATATCAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATTATAATAATTATATAA
Found at i:67184668 original size:21 final size:21
Alignment explanation
Indices: 67184642--67184685 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
67184632 GTATTAAATA
*
67184642 TTTT-AATAACTTTTTACTATT
1 TTTTAAATAA-TTTTTAATATT
67184663 TTTTAAATAATTTTTAATATT
1 TTTTAAATAATTTTTAATATT
67184684 TT
1 TT
67184686 GAATGACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTAAATAATTTTTAATATT
Found at i:67190365 original size:20 final size:22
Alignment explanation
Indices: 67190340--67190379 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
67190330 AAGAGTTTTC
67190340 AAAATACA-T-AAATAAAATTT
1 AAAATACATTAAAATAAAATTT
*
67190360 AAAATATATTAAAATAAAAT
1 AAAATACATTAAAATAAAAT
67190380 ATTTATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 1 0.06
22 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATACATTAAAATAAAATTT
Found at i:67190379 original size:15 final size:15
Alignment explanation
Indices: 67190359--67190392 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
67190349 AAATAAAATT
67190359 TAAAATATATTA-AAA
1 TAAAATAT-TTATAAA
67190374 TAAAATATTTATAAA
1 TAAAATATTTATAAA
67190389 TAAA
1 TAAA
67190393 TAAATTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
TAAAATATTTATAAA
Found at i:67196022 original size:6 final size:6
Alignment explanation
Indices: 67196006--67196045 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
67195996 GTAATTTCAC
67196006 TTTATTT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
1 TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
67196046 TCCTTTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 29 0.88
7 4 0.12
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:67201971 original size:48 final size:48
Alignment explanation
Indices: 67201895--67202180 Score: 285
Period size: 48 Copynumber: 6.0 Consensus size: 48
67201885 GACATTTGGG
* * * * *
67201895 TGATATGTGTGCCAGTATAAGACTATGTTTGGGATATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * *
67201943 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * * *
67201991 TG-TAATGAGAGCTAGTGTAAGACAATGTTTGGGACATGGCATC-GACA
1 TGAT-ATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* *
67202038 TTGATATGTGCGCTC-GTGTAAGACTATGTTTGGAACATGGCATCGG-CA
1 -TGATATGAGAGC-CAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * * * **
67202086 TTGAGATGAGAGCTAGTGTAAGACTATGTCTGGGACATGGCATCAACC-
1 -TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
* * *
67202134 TCGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 T-GATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGC
67202181 AATTCACCCC
Statistics
Matches: 195, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
47 4 0.02
48 188 0.96
49 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACTATGTTTGGAACATGGCATCGGCCA
Found at i:67202076 original size:96 final size:96
Alignment explanation
Indices: 67201912--67202183 Score: 388
Period size: 96 Copynumber: 2.8 Consensus size: 96
67201902 TGTGCCAGTA
* * *
67201912 TAAGACTATGTTTGGGATATGGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACCATGTTTGGA
1 TAAGACTATGTTTGGGACATGGCATC-GACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGA
67201976 ACATGGCATCGGCAATGTA-ATGAGAGCTAGTG
65 ACATGGCATCGGCAATG-AGATGAGAGCTAGTG
* * * *
67202008 TAAGACAATGTTTGGGACATGGCATCGACATTGATATGTGCGCTC-GTGTAAGACTATGTTTGGA
1 TAAGACTATGTTTGGGACATGGCATCGACATCGATATGTGAGC-CAGTGTAAGACCATGTTTGGA
*
67202072 ACATGGCATCGGCATTGAGATGAGAGCTAGTG
65 ACATGGCATCGGCAATGAGATGAGAGCTAGTG
* * * *
67202104 TAAGACTATGTCTGGGACATGGCATCAACCTCGACATGTGAGCCAGTGTAAGACCATGTTTGGAA
1 TAAGACTATGTTTGGGACATGGCATCGACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGAA
67202169 CATGGCATCGGCAAT
66 CATGGCATCGGCAAT
67202184 TCACCCCTTT
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
95 5 0.03
96 149 0.96
97 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (96 bp):
TAAGACTATGTTTGGGACATGGCATCGACATCGATATGTGAGCCAGTGTAAGACCATGTTTGGAA
CATGGCATCGGCAATGAGATGAGAGCTAGTG
Found at i:67202155 original size:144 final size:144
Alignment explanation
Indices: 67201895--67202178 Score: 351
Period size: 144 Copynumber: 2.0 Consensus size: 144
67201885 GACATTTGGG
* * * *
67201895 TGATATGTGTGCCAGTATAAGACTATGTTTGGGATATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCCAGTATAAGACTATGTTTGGAACATGGCATCGGCCACGAGATGAGAGCCAGTG
* ** * *
67201960 TAAGACCATGTTTGGAACATGGCATCGGCAATGTAATGAGAGCTAGTGTAAGACAATGTTTGGGA
66 TAAGACCATGTCTGGAACATGGCATCAACAATGTAATGAGAGCCAGTGTAAGACAATGTTTGGAA
67202025 CATGGCATCGACAT
131 CATGGCATCGACAT
* * *
67202039 TGATATGTGCGCTC-GTGTAAGACTATGTTTGGAACATGGCATCGG-CATTGAGATGAGAGCTAG
1 TGATATGTGCGC-CAGTATAAGACTATGTTTGGAACATGGCATCGGCCA-CGAGATGAGAGCCAG
* * * * *
67202102 TGTAAGACTATGTCTGGGACATGGCATCAAC-CTCG-ACATGTGAGCCAGTGTAAGACCATGTTT
64 TGTAAGACCATGTCTGGAACATGGCATCAACAAT-GTA-ATGAGAGCCAGTGTAAGACAATGTTT
67202165 GGAACATGGCATCG
127 GGAACATGGCATCG
67202179 GCAATTCACC
Statistics
Matches: 119, Mismatches: 17, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
143 4 0.03
144 114 0.96
145 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAGTATAAGACTATGTTTGGAACATGGCATCGGCCACGAGATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCAACAATGTAATGAGAGCCAGTGTAAGACAATGTTTGGAA
CATGGCATCGACAT
Found at i:67205174 original size:35 final size:35
Alignment explanation
Indices: 67205128--67205198 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
67205118 AGTACGAATA
*
67205128 TACTAGTGGAGTCTACTGAATTTTTGGTAAAAGTG
1 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
67205163 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
1 TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
67205198 T
1 T
67205199 CCAACTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.37
Consensus pattern (35 bp):
TACTAGTGGAGTCTACTGAATTTGTGGTAAAAGTG
Found at i:67209540 original size:40 final size:40
Alignment explanation
Indices: 67209485--67209709 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
67209475 TATTCGGATG
67209485 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
67209525 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
67209568 ATACCCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
67209608 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * * * *
67209648 ATATCCGGGTTAAGTCCCGACGGTATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
67209688 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
67209710 TACTTGGTTT
Statistics
Matches: 155, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 12 0.08
40 107 0.69
41 1 0.01
43 35 0.23
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:67209628 original size:83 final size:83
Alignment explanation
Indices: 67209489--67209643 Score: 247
Period size: 83 Copynumber: 1.9 Consensus size: 83
67209479 CGGATGATAT
* * * * *
67209489 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
67209554 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
* *
67209572 CCGGGCTAAGTCCAGAAGGCATTTGTGCTAGTGACTATTTCCGGGCTAAGACCCGAAGGCATGTG
1 CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
67209637 TGCGAGT
66 TGCGAGT
67209644 TACTATATCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
83 65 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (83 bp):
CCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTG
TGCGAGTAGTTGCTATAC
Found at i:67213288 original size:48 final size:48
Alignment explanation
Indices: 67213229--67213547 Score: 301
Period size: 48 Copynumber: 6.6 Consensus size: 48
67213219 TATGTGTGCT
* *
67213229 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * *
67213277 AGTGTAAGACCATGTTTAGAACATGGCATCGGCAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGAT-ATGAGAGCC
** * * * *
67213325 AGTGTAAGACCATGTCTGGGACATGGTTTCAG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
*
67213373 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCAT-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGAGCC
* *** * *
67213421 AATGTAA-ACCCATGTCTGGGACATGGCATC-TATATTGAGATGAGAGCT
1 AGTGTAAGA-CCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * *
67213469 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCAACAT-ATGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGA-GAGCC
* * *
67213517 AGTGTAAGACCATGTTTAGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
67213548 ACAATTCACC
Statistics
Matches: 220, Mismatches: 39, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
47 7 0.03
48 208 0.95
49 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
Found at i:67213397 original size:96 final size:96
Alignment explanation
Indices: 67213229--67213501 Score: 336
Period size: 96 Copynumber: 2.8 Consensus size: 96
67213219 TATGTGTGCT
* * * * *
67213229 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCA-CGATATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTGATATGAGAGCTAGTGTAAGACCATGTC
* * *
67213293 TAGAACATGGCATCGGCAATGTAATGAGAGCC
65 TGGGACATGGCATCGGCAATATAATGAGAGCC
** * *
67213325 AGTGTAAGACCATGTCTGGGACATGGTTTCAGCATTGATATGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
* * *
67213390 GGGACATGGCATTGGCCATATTATGAGAGCC
66 GGGACATGGCATCGGCAATATAATGAGAGCC
* * *
67213421 AATGTAA-ACCCATGTCTGGGACATGGCATCTA-TATTGAGATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGA-CCATGTCTGGGACATGGCATC-AGCATTGATATGAGAGCTAGTGTAAGACCATGT
67213484 CTGGGACATGGCATCGGC
64 CTGGGACATGGCATCGGC
67213502 CTCAACATAT
Statistics
Matches: 151, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
95 3 0.02
96 147 0.97
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCAATATAATGAGAGCC
Found at i:67213476 original size:144 final size:144
Alignment explanation
Indices: 67213216--67213494 Score: 393
Period size: 144 Copynumber: 1.9 Consensus size: 144
67213206 GACATTTGGG
* *
67213216 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAATG
* *
67213281 TAAGACCATGTTTAGAACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCTAGAACATGGCATCGACAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
67213346 CATGGTTTCAGCAT
131 CATGGTTTCAGCAT
* * *
67213360 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-TATTATGAGAGCCAAT
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGA-TATGAGAGCCAAT
* * * * * *
67213424 GTAA-ACCCATGTCTGGGACATGGCATCTATATTG-AGATGAGAGCTAGTGTAAGACCATGTCTG
65 GTAAGA-CCATGTCTAGAACATGGCATCGACAATGTA-ATGAGAGCCAGTGTAAGACCATGTCTG
67213487 GGACATGG
128 GGACATGG
67213495 CATCGGCCTC
Statistics
Matches: 119, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
143 3 0.03
144 116 0.97
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAATG
TAAGACCATGTCTAGAACATGGCATCGACAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGTTTCAGCAT
Found at i:67213521 original size:144 final size:144
Alignment explanation
Indices: 67213226--67213547 Score: 373
Period size: 144 Copynumber: 2.2 Consensus size: 144
67213216 TGATATGTGT
*
67213226 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAATGTAAGACCATG
* * **
67213291 TTTAGAACATGGCATCGGCAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTTTCA
66 TCTAGAACATGGCATCGACAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
** * * *
67213356 GCATTGATATGTGC
131 GCATCAACATATGA
* * *
67213370 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-TATTATGAGAGCCAATGTAA-ACCCA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGA-TATGAGAGCCAATGTAAGA-CCA
* * * * * *
67213433 TGTCTGGGACATGGCATCTATATTG-AGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCA
64 TGTCTAGAACATGGCATCGACAATGTA-ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA
* *
67213497 TCGGCCTCAACATATGA
128 TCAGCATCAACATATGA
* *
67213514 G-TCAGTGTAAGACCATGTTTAGAACATGGCATCG
1 GCT-AGTGTAAGACCATGTCTAGGACATGGCATCG
67213548 ACAATTCACC
Statistics
Matches: 149, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
143 4 0.03
144 145 0.97
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAATGTAAGACCATG
TCTAGAACATGGCATCGACAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
GCATCAACATATGA
Found at i:67213815 original size:18 final size:18
Alignment explanation
Indices: 67213792--67213826 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67213782 GTTTATACCT
67213792 GTGATATATAAGCATGTA
1 GTGATATATAAGCATGTA
* *
67213810 GTGATATCTACGCATGT
1 GTGATATATAAGCATGT
67213827 TCACTCAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.34
Consensus pattern (18 bp):
GTGATATATAAGCATGTA
Found at i:67215181 original size:27 final size:27
Alignment explanation
Indices: 67215136--67215193 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
67215126 ATTTAAGATG
67215136 TGTCTTAGTTTATTACTTGTGTTTAATA
1 TGTCTTAGTTTATTACTTGT-TTTAATA
*
67215164 TGTCTTAG-TTATTACTTGTTTTAATG
1 TGTCTTAGTTTATTACTTGTTTTAATA
67215190 TGTC
1 TGTC
67215194 CTAGCTGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 10 0.34
27 11 0.38
28 8 0.28
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.57
Consensus pattern (27 bp):
TGTCTTAGTTTATTACTTGTTTTAATA
Found at i:67215749 original size:10 final size:10
Alignment explanation
Indices: 67215718--67215752 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
67215708 CTGGAGAAGC
67215718 TTTCTGGAAT
1 TTTCTGGAAT
*
67215728 TTTCTTGAAAT
1 TTTC-TGGAAT
67215739 TTTCTGGAAT
1 TTTCTGGAAT
67215749 TTTC
1 TTTC
67215753 AGCTCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (10 bp):
TTTCTGGAAT
Found at i:67220262 original size:24 final size:28
Alignment explanation
Indices: 67220208--67220265 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
67220198 ATTTAAGATG
*
67220208 TGTCTTAGTTTATTAATTGTGTTTAATA
1 TGTCTTAGATTATTAATTGTGTTTAATA
* *
67220236 TGTCTTA-ATTATTACTTGT-TTTAATG
1 TGTCTTAGATTATTAATTGTGTTTAATA
67220262 TGTC
1 TGTC
67220266 CTAGCTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 10 0.37
27 10 0.37
28 7 0.26
ACGTcount: A:0.22, C:0.07, G:0.14, T:0.57
Consensus pattern (28 bp):
TGTCTTAGATTATTAATTGTGTTTAATA
Found at i:67241947 original size:46 final size:45
Alignment explanation
Indices: 67241887--67242062 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
67241877 TGGTTGAGCA
*
67241887 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * * *
67241933 TTCGAACTCATTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAAG
*
67241980 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67242026 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67242063 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 66 0.62
47 29 0.27
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67242043 original size:93 final size:93
Alignment explanation
Indices: 67241884--67242054 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
67241874 GGATGGTTGA
* * **
67241884 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTTCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67241949 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
67241977 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
67242042 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67242055 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67244461 original size:8 final size:8
Alignment explanation
Indices: 67244448--67244475 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
67244438 GGGGTTAATT
67244448 TGTGAAAA
1 TGTGAAAA
67244456 TGTGAAAA
1 TGTGAAAA
67244464 TGTGAAAA
1 TGTGAAAA
67244472 TGTG
1 TGTG
67244476 TGGTTAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (8 bp):
TGTGAAAA
Found at i:67245145 original size:42 final size:42
Alignment explanation
Indices: 67245035--67245138 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 42
67245025 GAGATTTACG
* * ** *
67245035 TGTAAGACCATACCTGGGACATTGGCATCGTATATAATTTCG
1 TGTAAGACCATATCTGGGACAGTGGCATCGTATATAATAACA
* * * * *
67245077 TATAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATAACA
1 TGTAAGACCATATCTGGGACAGTGGCATCG-TATATAATAACA
67245120 TGTAAGACCATATCTGGGA
1 TGTAAGACCATATCTGGGA
67245139 TATGGCAATG
Statistics
Matches: 48, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
42 25 0.52
43 23 0.48
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACAGTGGCATCGTATATAATAACA
Found at i:67245320 original size:21 final size:21
Alignment explanation
Indices: 67245294--67245340 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
67245284 GGTGAGTATG
* *
67245294 TTATAA-ATAATGGCATGTGAA
1 TTATAAGAGAATGGAATGTG-A
67245315 TTATAAGAGAATGGAATGTGA
1 TTATAAGAGAATGGAATGTGA
67245336 TTATA
1 TTATA
67245341 TGCAAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.34
Consensus pattern (21 bp):
TTATAAGAGAATGGAATGTGA
Found at i:67247681 original size:41 final size:40
Alignment explanation
Indices: 67247578--67247771 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
67247568 ATAGCAAATT
* * *
67247578 GCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
67247618 GCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
67247658 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTA
1 GCAC-AAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
* *
67247699 GCGCAAATGCCTTCGGCACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
*
67247739 GCACAAAGTGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAA-TGCCTTCGGGACTTAGCCCGGATAT
67247772 CATCCGAATA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 79 0.57
41 59 0.43
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:67247772 original size:81 final size:80
Alignment explanation
Indices: 67247578--67247772 Score: 302
Period size: 81 Copynumber: 2.4 Consensus size: 80
67247568 ATAGCAAATT
* * * *
67247578 GCACAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGAGACTTAGCC
67247643 CGGATATAGTCACTA
66 CGGATATAGTCACTA
* *
67247658 GCACAAAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTAGCGCAAATGCCTTCG-GCACTTAG
1 GCAC-AAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGAG-ACTTAG
67247722 CCCGGATATAGTCACTA
64 CCCGGATATAGTCACTA
67247739 GCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 GCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
67247773 ATCCGAATAA
Statistics
Matches: 106, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
80 8 0.08
81 98 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAACTAGCACAAATGCCTTCGAGACTTAGCC
CGGATATAGTCACTA
Found at i:67250043 original size:40 final size:40
Alignment explanation
Indices: 67249935--67250065 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
67249925 TCTTCGGAAT
* * *
67249935 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * * * *
67249974 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * *
67250014 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
67250054 TTAGCCCGGATA
1 TTAGCCCGGATA
67250066 TCATTCAAAT
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
Found at i:67258138 original size:40 final size:40
Alignment explanation
Indices: 67258094--67258200 Score: 205
Period size: 40 Copynumber: 2.7 Consensus size: 40
67258084 CAACTCGCAC
*
67258094 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
67258134 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
67258174 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
67258201 TCATTCAAAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:67263165 original size:40 final size:40
Alignment explanation
Indices: 67263120--67263303 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
67263110 CTCGCACAAG
* *
67263120 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
67263160 GCCTTCGAGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
67263200 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAAT
* * * *
67263240 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
67263280 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
67263304 CATTCGAATA
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 119 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:67272441 original size:40 final size:40
Alignment explanation
Indices: 67272379--67272556 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
67272369 AAGCCAAGTA
* * * *
67272379 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
67272418 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
67272458 CCTTCGGGACTTAGCCCAGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67272498 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67272538 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67272557 TTATCATCCA
Statistics
Matches: 123, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.11
40 110 0.89
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67280019 original size:40 final size:40
Alignment explanation
Indices: 67279940--67280155 Score: 240
Period size: 40 Copynumber: 5.4 Consensus size: 40
67279930 AAGCCAAGTA
* * * * *
67279940 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
* * *
67279979 CCTTCGGGACATAGCCCAGATATAGTAACTCACACCAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
67280019 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* *
67280059 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* * * *
67280099 CCTTTGGGACTTAGCCCAGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCAGATA-TAGTAACTCGCACAAATG
*
67280139 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
67280156 GGTTATCATC
Statistics
Matches: 152, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 13 0.09
40 139 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:67280099 original size:80 final size:79
Alignment explanation
Indices: 67279954--67280157 Score: 266
Period size: 80 Copynumber: 2.5 Consensus size: 79
67279944 CGGGATTTAA
* * * * *
67279954 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCAGATATAGTAACTCACACCAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
67280019 CCTTTGGGACTTAGC
65 CCTTTGGGACTTAGC
* *
67280034 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
67280099 CCTTTGGGACTTAGC
65 CCTTTGGGACTTAGC
* * * *
67280114 CCAGA-ACTAGTCACTAGCGCAAATGCCTTCAGGACTTAGCCCGG
1 CCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
67280158 TTATCATCCA
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
79 2 0.02
80 108 0.98
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGC
CTTTGGGACTTAGC
Found at i:67281593 original size:49 final size:49
Alignment explanation
Indices: 67281536--67281631 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
67281526 ATAAATGTAC
67281536 TCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTACAAATATAA
1 TCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTACAAATATAA
*
67281585 TCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTACTAATAT
1 TCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTACAAATAT
67281632 CCTGACTATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.36
Consensus pattern (49 bp):
TCAAATATGATCAAGTAATTCAATGAACATTTAATGTTTACAAATATAA
Found at i:67292995 original size:46 final size:46
Alignment explanation
Indices: 67292945--67293153 Score: 129
Period size: 46 Copynumber: 4.5 Consensus size: 46
67292935 TAGGCGACGT
* *
67292945 ATGTCCTAGACATGTCTGACATTGGCTAACAT-CTCAAGGCCGATGC
1 ATGTCCTAGACATGTCTGACACTCGCTAACATACT-AAGGCCGATGC
* ** * *
67292991 ATGTCCTATG-CATGTCTTACACTCGCTTTCATACTATGGCTGATGC
1 ATGTCCTA-GACATGTCTGACACTCGCTAACATACTAAGGCCGATGC
* * * * * * *
67293037 ATGTCCCAGACATGTCTTACACTAGC--CCTTGCCTCAATGCCGATGCC
1 ATGTCCTAGACATGTCTGACACTCGCTAACAT-ACT-AAGGCCGATG-C
* * * * * **
67293084 ATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCCGATGC
1 ATGTCCTAGACAT-GTCTGACACTCGCTAACATACTAAGGCCGATGC
* *
67293131 ATGTCCCAGACATGTCTTACACT
1 ATGTCCTAGACATGTCTGACACT
67293154 GGCACACAAA
Statistics
Matches: 131, Mismatches: 23, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
44 2 0.02
45 3 0.02
46 73 0.56
47 31 0.24
48 19 0.15
49 1 0.01
50 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
ATGTCCTAGACATGTCTGACACTCGCTAACATACTAAGGCCGATGC
Found at i:67293134 original size:94 final size:92
Alignment explanation
Indices: 67292977--67293153 Score: 257
Period size: 94 Copynumber: 1.9 Consensus size: 92
67292967 TGGCTAACAT
* * * *
67292977 CTCAAGGCCGATGCATGTCCTATGCATGTCTTACACTCGCTTTCATACTATGGCTGATGCATGTC
1 CTCAAGGCCGATGCATGTCCCATGCATGTCTTACACTCGCTATCATAATATGGCCGATGCATGTC
67293042 CCAGACATGTCTTACACTAGCCCTTGC
66 CCAGACATGTCTTACACTAGCCCTTGC
* * *
67293069 CTCAATGCCGATGCCATGTCCCA-GACATGGTCTTACACTGGCTATCATAATGTGGCCGATGCAT
1 CTCAAGGCCGATG-CATGTCCCATG-CAT-GTCTTACACTCGCTATCATAATATGGCCGATGCAT
67293133 GTCCCAGACATGTCTTACACT
63 GTCCCAGACATGTCTTACACT
67293154 GGCACACAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 13 0.17
93 11 0.15
94 51 0.68
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (92 bp):
CTCAAGGCCGATGCATGTCCCATGCATGTCTTACACTCGCTATCATAATATGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCCCTTGC
Found at i:67310649 original size:47 final size:47
Alignment explanation
Indices: 67310571--67310981 Score: 689
Period size: 47 Copynumber: 8.7 Consensus size: 47
67310561 CCCTTCGGGA
* * * * * *
67310571 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67310618 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67310665 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67310712 CTTATCACATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67310759 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67310806 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67310853 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67310900 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67310947 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67310982 AGAATCCTAA
Statistics
Matches: 346, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 345 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67320931 original size:40 final size:40
Alignment explanation
Indices: 67320800--67320933 Score: 153
Period size: 40 Copynumber: 3.4 Consensus size: 40
67320790 GTTATTGTGG
* * * * *
67320800 CACTTAGTGTGCGATATGACATATCTTCGACTATATATAA
1 CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
* * *
67320840 CACTTAGTGTGCT-ATTCGACATAGCTTTGGCTATATATGG
1 CACTTAGTGTG-TGATTTGACATAGCTTCGGCTATATATGA
* * *
67320880 CACTTAGTGTGTGATTTGAGATAGCTTCGGCTATGTACGA
1 CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
67320920 CACTTAGTGTGTGA
1 CACTTAGTGTGTGA
67320934 GATATCATGG
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 77 0.99
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.36
Consensus pattern (40 bp):
CACTTAGTGTGTGATTTGACATAGCTTCGGCTATATATGA
Found at i:67325704 original size:19 final size:20
Alignment explanation
Indices: 67325667--67325704 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
67325657 GAATGTAGCC
67325667 AATGTCTACTAATAATGTGA
1 AATGTCTACTAATAATGTGA
67325687 AATGTTCTA-TAA-AATGTG
1 AATG-TCTACTAATAATGTG
67325705 TTAGAATACG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (20 bp):
AATGTCTACTAATAATGTGA
Found at i:67325794 original size:40 final size:40
Alignment explanation
Indices: 67325739--67325851 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 40
67325729 TTATTTGATG
67325739 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCATGC
1 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCATGC
* *
67325779 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCATGC
* * *
67325819 TGGAA-TGACATCTGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCTGCAGGCT
67325852 ATGCTAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 17 0.26
40 49 0.74
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCTGCAGGCTTCATGC
Found at i:67329976 original size:20 final size:20
Alignment explanation
Indices: 67329947--67329990 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
67329937 AGAACATGTA
* *
67329947 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
67329967 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
67329987 TTCA
1 TTCA
67329991 ATTTAGTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:67332474 original size:21 final size:21
Alignment explanation
Indices: 67332448--67332487 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67332438 ATGTCATCTT
67332448 TTTAATTTAATTAACTTTTAA
1 TTTAATTTAATTAACTTTTAA
* *
67332469 TTTAATTTTATTAATTTTT
1 TTTAATTTAATTAACTTTT
67332488 TATAACAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTAATTTAATTAACTTTTAA
Found at i:67338109 original size:39 final size:39
Alignment explanation
Indices: 67338055--67338186 Score: 201
Period size: 39 Copynumber: 3.4 Consensus size: 39
67338045 GGTCTTTAAC
* ** * *
67338055 CCGGATATTTTTCCAGCACGTAGCTTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
67338094 CCGGATATATTTCCAGCATATAGCCTGCGAACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
67338133 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
67338172 CCAGATATATTTCCA
1 CCGGATATATTTCCA
67338187 ATATCATATA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:67340509 original size:24 final size:22
Alignment explanation
Indices: 67340482--67340527 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
67340472 ATGGTCTTAC
67340482 ATGTAATCACATTCTGGTAACCTA
1 ATGTAATCACATT-T-GTAACCTA
* *
67340506 ATGTCATGACATTTGTAACCTA
1 ATGTAATCACATTTGTAACCTA
67340528 TACTATTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 11 0.55
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (22 bp):
ATGTAATCACATTTGTAACCTA
Found at i:67352520 original size:46 final size:46
Alignment explanation
Indices: 67352416--67352631 Score: 145
Period size: 46 Copynumber: 4.6 Consensus size: 46
67352406 TATTATGAGT
67352416 GCCAGTGTAAGACCATGTCTGGGACATGCCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCATTGAGACGAGA
* * * *
67352464 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATA-TA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT--TGAGACGAGA
* * * * * **
67352510 GCCAATGTAAGAAATGTTTGGGACATGCATCGGC--T-ACAAGATTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGA-GA
* * ** * *
67352554 GTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACAGAGATGTGGGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA--CGAGA
*
67352604 GCCAGTGTAAGACCATGTTTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
67352632 GCGTCGGCTT
Statistics
Matches: 132, Mismatches: 24, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
44 10 0.08
45 12 0.09
46 46 0.35
47 16 0.12
48 15 0.11
49 3 0.02
50 25 0.19
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
Found at i:67360356 original size:47 final size:48
Alignment explanation
Indices: 67360093--67360350 Score: 249
Period size: 49 Copynumber: 5.4 Consensus size: 48
67360083 TGTGCTAGTA
** **
67360093 TAAGA-CATGTCTGGGACATGGCATCGGCACAGAGATGT-GGGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGG-AC-TTGAT-TCGATAGCCAGTG
* * * * *
67360142 TAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGATAGCCAGTG
*
67360191 TAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGGATAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT-AGCCAGTG
* * * *
67360238 TAAGACCATGTATGGGACATGGCGTCGGCCTTGATTTCGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCGATAGCCAGTG
* * *
67360287 TAAGACCATGTCTAGGACATGCCATC-GACTTGA-TGGATAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGAT-AGCCAGTG
*
67360334 TAAGACCATGTTTGGGA
1 TAAGACCATGTCTGGGA
67360351 TATGCCTTCG
Statistics
Matches: 173, Mismatches: 28, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
46 8 0.05
47 53 0.31
48 20 0.12
49 68 0.39
50 24 0.14
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGACTTGATTCGATAGCCAGTG
Found at i:67360362 original size:96 final size:96
Alignment explanation
Indices: 67360134--67360350 Score: 398
Period size: 96 Copynumber: 2.3 Consensus size: 96
67360124 GAGATGTGGG
67360134 AGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
* *
67360199 TGTCTGGGACATGGCATCGACTTGATGGATA
66 TGTCTAGGACATGCCATCGACTTGATGGATA
* *
67360230 AGCCAGTGTAAGACCATGTATGGGACATGGCGTCGGCCTTGATTTCGATAGTCAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
67360295 TGTCTAGGACATGCCATCGACTTGATGGATA
66 TGTCTAGGACATGCCATCGACTTGATGGATA
67360326 AGCCAGTGTAAGACCATGTTTGGGA
1 AGCCAGTGTAAGACCATGTTTGGGA
67360351 TATGCCTTCG
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 116 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
TGTCTAGGACATGCCATCGACTTGATGGATA
Done.