Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 2 of 362
Found at i:521532 original size:31 final size:31
Alignment explanation
Indices: 521453--521534 Score: 110
Period size: 31 Copynumber: 2.6 Consensus size: 31
521443 AATGAAATCC
* *
521453 AAGTTCAAGGGCAAAATTAGACCTAATTGCT
1 AAGTTCAAGGACAAAATTGGACCTAATTGCT
* *
521484 AATTTCAAGGGCAAAATTGGACCTAATTGCT
1 AAGTTCAAGGACAAAATTGGACCTAATTGCT
* *
521515 AAGTTCAAGTACTAAATTGG
1 AAGTTCAAGGACAAAATTGG
521535 TCCAAAAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (31 bp):
AAGTTCAAGGACAAAATTGGACCTAATTGCT
Found at i:522567 original size:25 final size:25
Alignment explanation
Indices: 522537--522587 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
522527 ATCAAATCAA
522537 ATATAAAATTAAAAAAAAAAACTAT
1 ATATAAAATTAAAAAAAAAAACTAT
* *
522562 ATATAAAATTTAAAAAAAAAGCTAT
1 ATATAAAATTAAAAAAAAAAACTAT
522587 A
1 A
522588 ATTTTTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (25 bp):
ATATAAAATTAAAAAAAAAAACTAT
Found at i:526128 original size:31 final size:31
Alignment explanation
Indices: 526093--526155 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
526083 ATCTTCATGG
* *
526093 TTTTTAAAGAATTAAATTAAAATTTTATCAT
1 TTTTTAAAGAATCAAAATAAAATTTTATCAT
* *
526124 TTTTTAAAGAGTCAAAATATAATTTTATCAT
1 TTTTTAAAGAATCAAAATAAAATTTTATCAT
526155 T
1 T
526156 ACTAATTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (31 bp):
TTTTTAAAGAATCAAAATAAAATTTTATCAT
Found at i:529351 original size:29 final size:31
Alignment explanation
Indices: 529294--529352 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
529284 GAATTTTCCA
*
529294 TTTTAATAAAATAAATTTATTTTTACATAAC
1 TTTTAATAAAATAAATATATTTTTACATAAC
*
529325 TTTTAAT-AAATATATAT-TTTTTACATAA
1 TTTTAATAAAATAAATATATTTTTACATAA
529353 AATTATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 11 0.42
30 8 0.31
31 7 0.27
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (31 bp):
TTTTAATAAAATAAATATATTTTTACATAAC
Found at i:546945 original size:20 final size:20
Alignment explanation
Indices: 546903--546952 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
546893 AGTTTAGTGC
***
546903 TTAAGGTTTAGAGTTCGGGG
1 TTAAGGTTTAGAGTTCAAAG
*
546923 TTAAGGTTTAGAGTTTAAAG
1 TTAAGGTTTAGAGTTCAAAG
546943 TTAGAGGTTT
1 TTA-AGGTTT
546953 TTGATTTGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.26, C:0.02, G:0.32, T:0.40
Consensus pattern (20 bp):
TTAAGGTTTAGAGTTCAAAG
Found at i:556290 original size:47 final size:47
Alignment explanation
Indices: 556234--556344 Score: 150
Period size: 47 Copynumber: 2.4 Consensus size: 47
556224 TTTTAGGTTA
* **
556234 AAATCAATTCAAGTTCACATTCTCAAGATTTGCATTGAATCGGATTC
1 AAATCAATTCAAGTTCACATTCTCAAAATTCACATTGAATCGGATTC
* * * * *
556281 AGATCAATTCAAGCTCTCATTCTTAAAATTCACGTTGAATCGGATTC
1 AAATCAATTCAAGTTCACATTCTCAAAATTCACATTGAATCGGATTC
556328 AAATCAATTCAAGTTCA
1 AAATCAATTCAAGTTCA
556345 GTTGTTGAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (47 bp):
AAATCAATTCAAGTTCACATTCTCAAAATTCACATTGAATCGGATTC
Found at i:568674 original size:3 final size:3
Alignment explanation
Indices: 568666--568691 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
568656 TTCCAAACCT
568666 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
568692 TATGGTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:570392 original size:17 final size:19
Alignment explanation
Indices: 570356--570394 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
570346 TTTAAATTCG
*
570356 AATATTATTATTATTATAA
1 AATATTATTATCATTATAA
570375 AATATTA-TATCA-TATAA
1 AATATTATTATCATTATAA
570392 AAT
1 AAT
570395 TATAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 4 0.21
19 7 0.37
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
AATATTATTATCATTATAA
Found at i:578454 original size:26 final size:26
Alignment explanation
Indices: 578403--578473 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 26
578393 AATAACGAGA
*
578403 CTAAATTTCTAAAAGTAAAAGTGGATGAG
1 CTAAATTT-T-AAA-TATAAGTGGATGAG
578432 CTAAATTTTAAATATAAGTGGATGAG
1 CTAAATTTTAAATATAAGTGGATGAG
578458 CTAAATTTTAAATATA
1 CTAAATTTTAAATATA
578474 CGAAATGTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 29 0.71
27 3 0.07
28 1 0.02
29 8 0.20
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.34
Consensus pattern (26 bp):
CTAAATTTTAAATATAAGTGGATGAG
Found at i:580228 original size:23 final size:22
Alignment explanation
Indices: 580170--580229 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
580160 AAATAAATAT
* *
580170 ATAAAAATT-CAAAAAGTATAT
1 ATAAAAATTACAAAAAATATAA
*
580191 AT-AAAATCTAGAAAAAATATAAA
1 ATAAAAAT-TACAAAAAATAT-AA
580214 ATAAAAATTACAAAAA
1 ATAAAAATTACAAAAA
580230 TTATGATAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
20 5 0.16
21 3 0.10
22 8 0.26
23 10 0.32
24 5 0.16
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.23
Consensus pattern (22 bp):
ATAAAAATTACAAAAAATATAA
Found at i:580356 original size:15 final size:16
Alignment explanation
Indices: 580332--580363 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
580322 AAATTCTTTT
580332 TATATAAATTCTAAAA
1 TATATAAATTCTAAAA
580348 TATAT-AATTCTAAAA
1 TATATAAATTCTAAAA
580363 T
1 T
580364 TCTCAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATAAATTCTAAAA
Found at i:582439 original size:2 final size:2
Alignment explanation
Indices: 582386--582424 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
582376 ATGTCTTTGG
* * *
582386 TA TA TG TA TG TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
582425 TTTAAATTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:582445 original size:3 final size:3
Alignment explanation
Indices: 582437--582489 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
582427 TAAATTCATA
* *
582437 TAT TAT TAT CAT TAT T-T T-T TA- TGT TA- TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
582481 TAT TAT TAT
1 TAT TAT TAT
582490 CATTGTCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
2 7 0.16
3 36 0.84
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:582456 original size:29 final size:28
Alignment explanation
Indices: 582402--582481 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 28
582392 TATGTATATA
*
582402 CATATATATATATATATATATATTTTAAATT
1 CATATAT-TAT-TATAT-TATTTTTTAAATT
**
582433 CATATATTATTATCATTATTTTTTATGTT
1 CATATATTATTAT-ATTATTTTTTAAATT
582462 -ATATTATTATTATTATTATT
1 CATA-TATTATTA-TATTATT
582482 ATTATTATCA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
28 3 0.07
29 27 0.63
30 6 0.14
31 7 0.16
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.59
Consensus pattern (28 bp):
CATATATTATTATATTATTTTTTAAATT
Found at i:584770 original size:84 final size:84
Alignment explanation
Indices: 584593--584771 Score: 304
Period size: 84 Copynumber: 2.1 Consensus size: 84
584583 AATTCAATAG
* *
584593 AATCGATTATTACAAGCATCAAACTAAACAATTATTCAATAATGAATTTAAACTAACGAAACAGA
1 AATCGATTATTACAAGCATCAAACTAAACAATTATTCAATAACGAATTTAAACTAACCAAACAGA
584658 GATCTCCTCGAGTTCTTAT
66 GATCTCCTCGAGTTCTTAT
* *
584677 AATCAATTATTACAAGCATCAAACTAAACAATTATTCAATAACGAATTTATACTAACCAAACAGA
1 AATCGATTATTACAAGCATCAAACTAAACAATTATTCAATAACGAATTTAAACTAACCAAACAGA
*
584742 GATCTCCTCGCGTTCTTAT
66 GATCTCCTCGAGTTCTTAT
*
584761 AATTGATTATT
1 AATCGATTATT
584772 GCATTTTGTC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 88 1.00
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.31
Consensus pattern (84 bp):
AATCGATTATTACAAGCATCAAACTAAACAATTATTCAATAACGAATTTAAACTAACCAAACAGA
GATCTCCTCGAGTTCTTAT
Found at i:596743 original size:10 final size:11
Alignment explanation
Indices: 596715--596740 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
596705 TGTTTTTATT
596715 AAAAATTAGAA
1 AAAAATTAGAA
596726 AAAAATTAGAA
1 AAAAATTAGAA
596737 AAAA
1 AAAA
596741 TTAAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
AAAAATTAGAA
Found at i:596807 original size:9 final size:9
Alignment explanation
Indices: 596789--596875 Score: 61
Period size: 9 Copynumber: 9.1 Consensus size: 9
596779 ATAAAATATT
596789 AAATATAAA
1 AAATATAAA
596798 AAAT-TAAA
1 AAATATAAA
596806 AAATATAAA
1 AAATATAAA
*
596815 AAATCGTAAA
1 AAAT-ATAAA
596825 AATATATATATA
1 AA-ATATA-A-A
*
596837 AAATTTGTAAA
1 AAA--TATAAA
*
596848 AAAT-TATA
1 AAATATAAA
*
596856 AAATATATAG
1 AAATATA-AA
596866 AAATATAAA
1 AAATATAAA
596875 A
1 A
596876 TTTTATAAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
8 15 0.24
9 17 0.27
10 15 0.24
11 8 0.13
12 4 0.06
13 3 0.05
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (9 bp):
AAATATAAA
Found at i:596809 original size:17 final size:18
Alignment explanation
Indices: 596789--596832 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
596779 ATAAAATATT
596789 AAATATAAAAAAT-TAAA
1 AAATATAAAAAATCTAAA
596806 AAATATAAAAAATCGTAAA
1 AAATATAAAAAATC-TAAA
596825 AATATATA
1 AA-ATATA
596833 TATAAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.54
19 6 0.25
20 5 0.21
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (18 bp):
AAATATAAAAAATCTAAA
Found at i:596857 original size:10 final size:10
Alignment explanation
Indices: 596792--596858 Score: 50
Period size: 10 Copynumber: 6.7 Consensus size: 10
596782 AAATATTAAA
596792 TATAAAAAA-
1 TATAAAAAAT
596801 T-TAAAAAA-
1 TATAAAAAAT
596809 TATAAAAAAT
1 TATAAAAAAT
**
596819 CGTAAAAATAT
1 TATAAAAA-AT
*
596830 ATATATAAAATT
1 -TATA-AAAAAT
*
596842 TGTAAAAAAT
1 TATAAAAAAT
596852 TATAAAA
1 TATAAAA
596859 TATATAGAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
8 8 0.18
9 8 0.18
10 17 0.38
11 5 0.11
12 3 0.07
13 4 0.09
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:596944 original size:48 final size:46
Alignment explanation
Indices: 596789--596948 Score: 119
Period size: 48 Copynumber: 3.3 Consensus size: 46
596779 ATAAAATATT
* * *
596789 AAATATAAAAAATTAAAAAATATAAA-AAATCGTAAAAATATATATATAAA
1 AAAT-TAAAAAATTATAAAATATAAAGAAAT-AT-AAAAT-TTTATA-AAA
** * *
596839 ATTTGTAAAAAATTATAAAATATATAGAAATATAAAATTTTATAAAG
1 AAAT-TAAAAAATTATAAAATATAAAGAAATATAAAATTTTATAAAA
***
596886 TCGTTAAAAAATTATACAAAATATAAAGAAATAT-AAATTTCT-TAAAA
1 AAATTAAAAAATTAT--AAAATATAAAGAAATATAAAATTT-TATAAAA
596933 AAATTATAAAAATTAT
1 AAATTA-AAAAATTAT
596949 CGTACCAAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
46 11 0.12
47 16 0.18
48 31 0.35
49 5 0.06
50 22 0.25
51 4 0.04
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (46 bp):
AAATTAAAAAATTATAAAATATAAAGAAATATAAAATTTTATAAAA
Found at i:597006 original size:18 final size:19
Alignment explanation
Indices: 596965--597007 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
596955 AAAAGAAACA
596965 TTTTATATTTTTTCTATAC
1 TTTTATATTTTTTCTATAC
*
596984 TTTTAT-TTATTTT-TATTC
1 TTTTATATT-TTTTCTATAC
597002 TTTTAT
1 TTTTAT
597008 CAATTTCTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTATATTTTTTCTATAC
Found at i:597118 original size:38 final size:38
Alignment explanation
Indices: 597081--597178 Score: 114
Period size: 36 Copynumber: 2.7 Consensus size: 38
597071 AGTCGTTATT
*
597081 TTTTTTATGATTTTTAT-AAAATTT-TAATTTTTTTTA
1 TTTTTTACGATTTTTATAAAAATTTCTAATTTTTTTTA
**
597117 TTTTTTACGATTTTTATAAAAAATTTCTAATTTTTAATA
1 TTTTTTACGATTTTTAT-AAAAATTTCTAATTTTTTTTA
* *
597156 ATTTTTA--ATTTTTATTAAAATTT
1 TTTTTTACGATTTTTATAAAAATTT
597179 AATAGTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
36 23 0.43
37 8 0.15
38 7 0.13
39 16 0.30
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (38 bp):
TTTTTTACGATTTTTATAAAAATTTCTAATTTTTTTTA
Found at i:597167 original size:37 final size:36
Alignment explanation
Indices: 597090--597178 Score: 101
Period size: 39 Copynumber: 2.4 Consensus size: 36
597080 TTTTTTTATG
** *
597090 ATTTTTAT-AAAATTTTAATTTTTTTTATTTTTTAC
1 ATTTTTATAAAAATTTTAATTTTTAATAATTTTTAC
597125 GATTTTTATAAAAAATTTCTAATTTTTAATAATTTTTA-
1 -ATTTTTAT-AAAAATTT-TAATTTTTAATAATTTTTAC
*
597163 ATTTTTATTAAAATTT
1 ATTTTTATAAAAATTT
597179 AATAGTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
36 15 0.33
37 8 0.17
38 7 0.15
39 16 0.35
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (36 bp):
ATTTTTATAAAAATTTTAATTTTTAATAATTTTTAC
Found at i:597179 original size:17 final size:17
Alignment explanation
Indices: 597090--597181 Score: 51
Period size: 17 Copynumber: 5.1 Consensus size: 17
597080 TTTTTTTATG
597090 ATTTTTA-TAAAATTTTA
1 ATTTTTATTAAAA-TTTA
* ***
597107 ATTTTTTTTATTTTTTA
1 ATTTTTATTAAAATTTA
*
597124 CGATTTTTATAAAAAATTTCTA
1 --ATTTTTAT-TAAAA-TT-TA
* **
597146 ATTTTTAATAATTTTTA
1 ATTTTTATTAAAATTTA
597163 ATTTTTATTAAAATTTA
1 ATTTTTATTAAAATTTA
597180 AT
1 AT
597182 AGTTTTTCTA
Statistics
Matches: 53, Mismatches: 16, Indels: 12
0.65 0.20 0.15
Matches are distributed among these distances:
17 28 0.53
18 4 0.08
19 9 0.17
20 8 0.15
21 2 0.04
22 2 0.04
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (17 bp):
ATTTTTATTAAAATTTA
Found at i:598095 original size:34 final size:34
Alignment explanation
Indices: 598057--598122 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
598047 TTTGGGCGGC
598057 AAAGATTGGGCATACTTCAGTGTTAGGGTTTGGT
1 AAAGATTGGGCATACTTCAGTGTTAGGGTTTGGT
*
598091 AAAGATTGGGCATATTTCAGTGTTAGGGTTTG
1 AAAGATTGGGCATACTTCAGTGTTAGGGTTTG
598123 ATATAAGTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (34 bp):
AAAGATTGGGCATACTTCAGTGTTAGGGTTTGGT
Found at i:600552 original size:47 final size:47
Alignment explanation
Indices: 600443--600553 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
600433 CCGGGATAAG
* * *
600443 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
600490 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
600537 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
600554 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:613542 original size:13 final size:13
Alignment explanation
Indices: 613524--613549 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
613514 AATTAAATAG
613524 ATTTTATTTATTT
1 ATTTTATTTATTT
613537 ATTTTATTTATTT
1 ATTTTATTTATTT
613550 TAATATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:614728 original size:19 final size:19
Alignment explanation
Indices: 614699--614748 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
614689 AGTATCCCTG
614699 AAAAGTTTAAAATTTTAAAT
1 AAAA-TTTAAAATTTTAAAT
614719 AAAATTTAAAATTTTAAAT
1 AAAATTTAAAATTTTAAAT
614738 AAAATTTAAAA
1 AAAATTTAAAA
614749 AATAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 26 0.87
20 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAAATTTAAAATTTTAAAT
Found at i:617928 original size:90 final size:92
Alignment explanation
Indices: 617816--618400 Score: 379
Period size: 104 Copynumber: 5.8 Consensus size: 92
617806 AGCTAAAACA
* * ** *
617816 ACCAGTTTTAAGCTATAAACCCATAAATTTCCTCCATAATTTAATCAACAATTACCCCATTTCAT
1 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAATCAACAATAACCCCATTTCAT
617881 T-ATCCACTAGCAAAAACTAAAAG-CC
66 TAATCCACTAGCAAAAACTAAAAGACC
* * *
617906 GCCAATTTTAAGCTGTAAACCCATAAATTTCTTCCATTGTTTAACAATCAACAATCACCCCATTT
1 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTT---AATCAACAATAACCCCATTT
617971 CATTAATCCACTAG-AAAATACTAAAATCCAGCTAAAACC
63 CATTAATCCACTAGCAAAA-ACT-AAA---AG-----ACC
618010 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAA-CAATTACCAATAACCCCATT
1 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAATC-A--A-CAATAACCCCATT
**
618074 TCATTAATCCACTAGCAATTACTAAAATCCAGCTGAAACC
62 TCATTAATCCACTAGCAAAAACT-AAA---A---G--ACC
* * *
618114 ACCAATTTTTAAGCTGTAAACCCACAAATTTCCTACATAGTTTAACCATCAACAATAACCCCATT
1 ACCAA-TTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTT-A--ATCAACAATAACCCCATT
* * * **
618179 TCATTAACCCATTATCAATTACTAAAATCCAGCTAAAACC
62 TCATTAATCCACTAGCAAAAACT-AAA---AG-----ACC
* * * *
618219 ACCGATTTTAAGCTGTAAACTCATAAAATTCCTCCATGGTTTAA-CAATCAATGATCACCCCATT
1 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAATCAA-CAAT-A--ACCCCATT
* **
618283 TCATTGATCCACTAGCAATTACTAAAATCCAGCAAAACTC
62 TCATTAATCCACTAGCAAAAACT-AAA---AG----AC-C
* * *
618323 ACCAATTTTAAGCTGTAAACCCATAAAATTCCTACATAGTTTAACAATCAACAATAACCCCATTT
1 ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTT---AATCAACAATAACCCCATTT
*
618388 CACTAATCCACTA
63 CATTAATCCACTA
618401 TCAATTACCA
Statistics
Matches: 420, Mismatches: 35, Indels: 66
0.81 0.07 0.13
Matches are distributed among these distances:
90 36 0.09
93 27 0.06
94 12 0.03
95 3 0.01
98 2 0.00
100 4 0.01
101 8 0.02
102 2 0.00
103 7 0.02
104 217 0.52
105 86 0.20
106 3 0.01
107 7 0.02
108 5 0.01
109 1 0.00
ACGTcount: A:0.39, C:0.27, G:0.05, T:0.29
Consensus pattern (92 bp):
ACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAATCAACAATAACCCCATTTCAT
TAATCCACTAGCAAAAACTAAAAGACC
Found at i:618087 original size:104 final size:104
Alignment explanation
Indices: 617897--618459 Score: 779
Period size: 104 Copynumber: 5.4 Consensus size: 104
617887 CTAGCAAAAA
* * * *
617897 CTAAAAGCCGCCAATTTTAAGCTGTAAACCCATAAATTTCTTCCATTGTTTAACAATCAACAATC
1 CTAAAA-CCACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATA
* *
617962 ACCCCATTTCATTAATCCACTAGAAAATACTAAAATCCAG
65 ACCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
* * *
618002 CTAAAACCACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATTGTTTAACAATTACCAATAA
1 CTAAAACCACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATAA
618067 CCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
66 CCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
* * * *
618106 CTGAAACCACCAATTTTTAAGCTGTAAACCCACAAATTTCCTACATAGTTTAACCATCAACAATA
1 CTAAAACCACCAA-TTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATA
* * *
618171 ACCCCATTTCATTAACCCATTATCAATTACTAAAATCCAG
65 ACCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
* * * * ** *
618211 CTAAAACCACCGATTTTAAGCTGTAAACTCATAAAATTCCTCCATGGTTTAACAATCAATGATCA
1 CTAAAACCACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATAA
*
618276 CCCCATTTCATTGATCCACTAGCAATTACTAAAATCCAG
66 CCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
* *
618315 C-AAAACTCACCAATTTTAAGCTGTAAACCCATAAAATTCCTACATAGTTTAACAATCAACAATA
1 CTAAAAC-CACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATA
* * *
618379 ACCCCATTTCACTAATCCACTATCAATTACCAAAATCCAG
65 ACCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
* ** *
618419 CTTAAGTCATCAATTTTAAGCTGTAAACCCA-AAATTATCCT
1 CTAAAACCACCAATTTTAAGCTGTAAACCCATAAATT-TCCT
618460 AAAAAAAAGG
Statistics
Matches: 406, Mismatches: 48, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
103 9 0.02
104 296 0.73
105 101 0.25
ACGTcount: A:0.39, C:0.26, G:0.06, T:0.29
Consensus pattern (104 bp):
CTAAAACCACCAATTTTAAGCTGTAAACCCATAAATTTCCTCCATAGTTTAACAATCAACAATAA
CCCCATTTCATTAATCCACTAGCAATTACTAAAATCCAG
Found at i:618281 original size:209 final size:208
Alignment explanation
Indices: 617907--618449 Score: 800
Period size: 209 Copynumber: 2.6 Consensus size: 208
617897 CTAAAAGCCG
* * * *
617907 CCAATTTTAAGCTGTAAACCCATAAATTTCTTCCATTGTTTAACAATCAACAATCACCCCATTTC
1 CCAATTTTAAGCTGTAAACCCATAAATTTCCTACATAGTTTAACAATCAACAATAACCCCATTTC
** *
617972 ATTAATCCACTAGAAAATACTAAAATCCAGCTAAAACCACCAATTTTAAGCTGTAAACCCATAAA
66 ATTAATCCACTATCAATTACTAAAATCCAGCTAAAACCACCAATTTTAAGCTGTAAACCCATAAA
* * * *
618037 TTTCCTCCATTGTTTAACAATTACCAATAACCCCATTTCATTAATCCACTAGCAATTACTAAAAT
131 ATTCCTCCATGGTTTAACAATCAACAATAACCCCATTTCATTAATCCACTAGCAATTACTAAAAT
*
618102 CCAGCTGAAAC-CA
196 CCAGC-AAAACTCA
* *
618115 CCAATTTTTAAGCTGTAAACCCACAAATTTCCTACATAGTTTAACCATCAACAATAACCCCATTT
1 CCAA-TTTTAAGCTGTAAACCCATAAATTTCCTACATAGTTTAACAATCAACAATAACCCCATTT
* * * *
618180 CATTAACCCATTATCAATTACTAAAATCCAGCTAAAACCACCGATTTTAAGCTGTAAACTCATAA
65 CATTAATCCACTATCAATTACTAAAATCCAGCTAAAACCACCAATTTTAAGCTGTAAACCCATAA
** * *
618245 AATTCCTCCATGGTTTAACAATCAATGATCACCCCATTTCATTGATCCACTAGCAATTACTAAAA
130 AATTCCTCCATGGTTTAACAATCAACAATAACCCCATTTCATTAATCCACTAGCAATTACTAAAA
618310 TCCAGCAAAACTCA
195 TCCAGCAAAACTCA
*
618324 CCAATTTTAAGCTGTAAACCCATAAAATTCCTACATAGTTTAACAATCAACAATAACCCCATTTC
1 CCAATTTTAAGCTGTAAACCCATAAATTTCCTACATAGTTTAACAATCAACAATAACCCCATTTC
* * * ** *
618389 ACTAATCCACTATCAATTACCAAAATCCAGCTTAAGTCATCAATTTTAAGCTGTAAACCCA
66 ATTAATCCACTATCAATTACTAAAATCCAGCTAAAACCACCAATTTTAAGCTGTAAACCCA
618450 AAATTATCCT
Statistics
Matches: 298, Mismatches: 35, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
208 117 0.39
209 181 0.61
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.29
Consensus pattern (208 bp):
CCAATTTTAAGCTGTAAACCCATAAATTTCCTACATAGTTTAACAATCAACAATAACCCCATTTC
ATTAATCCACTATCAATTACTAAAATCCAGCTAAAACCACCAATTTTAAGCTGTAAACCCATAAA
ATTCCTCCATGGTTTAACAATCAACAATAACCCCATTTCATTAATCCACTAGCAATTACTAAAAT
CCAGCAAAACTCA
Found at i:626031 original size:14 final size:15
Alignment explanation
Indices: 626012--626040 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
626002 GAGCTTACAG
626012 GTTTTTTT-TTCTTT
1 GTTTTTTTATTCTTT
626026 GTTTTTTTATTCTTT
1 GTTTTTTTATTCTTT
626041 CTTATGATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.83
Consensus pattern (15 bp):
GTTTTTTTATTCTTT
Found at i:642946 original size:24 final size:22
Alignment explanation
Indices: 642910--642964 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
642900 TATGTGTGTA
* *
642910 TGTGTATGCATGTATATCTATCTG
1 TGTGTGTGTATGTATATCT-T-TG
* *
642934 TGTGTGTGTATGTATGTGTTTG
1 TGTGTGTGTATGTATATCTTTG
642956 TGTGTGTGT
1 TGTGTGTGT
642965 TCATTAGTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 11 0.41
23 1 0.04
24 15 0.56
ACGTcount: A:0.13, C:0.05, G:0.31, T:0.51
Consensus pattern (22 bp):
TGTGTGTGTATGTATATCTTTG
Found at i:643035 original size:18 final size:18
Alignment explanation
Indices: 643014--643053 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
643004 ATTTATGTTT
643014 GTATATATACATATGTAG
1 GTATATATACATATGTAG
643032 GTATATATACATATGTAG
1 GTATATATACATATGTAG
643050 GTAT
1 GTAT
643054 GCATGCGTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.17, T:0.40
Consensus pattern (18 bp):
GTATATATACATATGTAG
Found at i:643094 original size:18 final size:18
Alignment explanation
Indices: 643007--643095 Score: 70
Period size: 18 Copynumber: 4.6 Consensus size: 18
642997 TGTATGTATT
*
643007 TATGTTTGTATATATACA
1 TATGTATGTATATATACA
*
643025 TATGTAGGTATATATACA
1 TATGTATGTATATATACA
* * *
643043 TATGTAGGTATGCATGCGTGCA
1 TATGTATGTAT--AT--ATACA
*
643065 TGTATGTTTGTATATATACA
1 --TATGTATGTATATATACA
643085 TATGTATGTAT
1 TATGTATGTAT
643096 GCATATATGT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
18 37 0.66
20 5 0.09
22 5 0.09
24 9 0.16
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (18 bp):
TATGTATGTATATATACA
Found at i:643111 original size:42 final size:42
Alignment explanation
Indices: 643032--643119 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
643022 ACATATGTAG
* * *
643032 GTATATATACATATGTAGGTATGCATGCGTGCATGTATGTTT
1 GTATATATACATATGTAGGTATGCATACATGCATGTATGTGT
* * **
643074 GTATATATACATATGTATGTATGCATATATGTTTGTATGTGT
1 GTATATATACATATGTAGGTATGCATACATGCATGTATGTGT
643116 GTAT
1 GTAT
643120 TGGTATATGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (42 bp):
GTATATATACATATGTAGGTATGCATACATGCATGTATGTGT
Found at i:644156 original size:21 final size:21
Alignment explanation
Indices: 644115--644176 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
644105 AATCCTAAAT
** *
644115 AGGTTTGAGGTTCGAGGTTTAA
1 AGGTTTGAGGTTTAAGATTT-A
*
644137 AGTTTTGA-GTTTAAGATTTA
1 AGGTTTGAGGTTTAAGATTTA
644157 AGGTTTGAGGTTTAAGATTT
1 AGGTTTGAGGTTTAAGATTT
644177 GAGTTTGGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 8 0.24
21 19 0.56
22 7 0.21
ACGTcount: A:0.26, C:0.02, G:0.29, T:0.44
Consensus pattern (21 bp):
AGGTTTGAGGTTTAAGATTTA
Found at i:644204 original size:34 final size:34
Alignment explanation
Indices: 644131--644204 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
644121 GAGGTTCGAG
* * * *
644131 GTTTAAAGTTTTGAGTTTAAGATTTAAGGTTTGAG
1 GTTT-AAGATTTGAGTTTAAGATATAAGGTTTAAA
**
644166 GTTTAAGATTTGAGTTTGGGATATAAGGTTTAAA
1 GTTTAAGATTTGAGTTTAAGATATAAGGTTTAAA
644200 GTTTA
1 GTTTA
644205 GGGTTCAAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.45
Consensus pattern (34 bp):
GTTTAAGATTTGAGTTTAAGATATAAGGTTTAAA
Found at i:645032 original size:64 final size:63
Alignment explanation
Indices: 644914--645053 Score: 183
Period size: 64 Copynumber: 2.2 Consensus size: 63
644904 ATTTAACACA
* * ** * * **
644914 TATT-GACATATATCTCAACATTTGTGTAGAATTACAACTTTCACGTATTTAAAAAAATACTTG
1 TATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATA-TCCAAAAAATACTTG
*
644977 TATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCCAAAAAATATTTG
1 TATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCCAAAAAATACTTG
645040 TATTCGACACATAT
1 TATTCGACACATAT
645054 TAACATATAT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
63 30 0.45
64 37 0.55
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (63 bp):
TATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCCAAAAAATACTTG
Found at i:645050 original size:137 final size:137
Alignment explanation
Indices: 644827--645275 Score: 470
Period size: 137 Copynumber: 3.2 Consensus size: 137
644817 CGCATATCCA
* * * * *
644827 AAAAATAATACTTGTATTTGACACATAT-CTAACATTTATGTACAATTACAACTTCCACATATAT
1 AAAAA-AATACTTGTATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCT
** ** * ** *
644891 GGAAAATCGTTATATTTAACACATATTGACATATATCTCAACATTTGTGTAGAATTACAACTTTC
65 AAAAAATATTTGTATTCGACACATATTGACATATATCTCAACATTTGTGTAGAATTACAACTTCC
644956 ACGTATTT
130 ACGTATTT
*
644964 AAAAAAATACTTGTATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCCA
1 AAAAAAATACTTGTATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCTA
* * *
645029 AAAAATATTTGTATTCGACACATATTAACATATATCTCAACATTTGTGTGGAATTACAACATCCA
66 AAAAATATTTGTATTCGACACATATTGACATATATCTCAACATTTGTGTAGAATTACAACTTCCA
*
645094 CATATTT
131 CGTATTT
* * * *
645101 AAAAAAAAATACTTGTATTCGATACATATTAACACACATTCCATCATTCGTGTAGAATTATAAAT
1 --AAAAAAATACTTGTATTCGACACATA-T--C-C-CA----A-CATTCATGTAGAATTACAACT
* * * * * * *
645166 TACACATATCTAAAAAATATTTGTATTCGACATATATCGACACATATCCCAGCATTCGTGTAGAA
54 TCCACATATCTAAAAAATATTTGTATTCGACACATATTGACATATATCTCAACATTTGTGTAGAA
645231 TTACAACTTCCACGTATTT
119 TTACAACTTCCACGTATTT
* ** *
645250 -GAAAAATACTTCCATTCGCCACATAT
1 AAAAAAATACTTGTATTCGACACATAT
645276 GAATAATGTA
Statistics
Matches: 260, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
136 21 0.08
137 97 0.37
139 25 0.10
140 1 0.00
142 1 0.00
143 1 0.00
144 2 0.01
145 1 0.00
146 20 0.08
148 1 0.00
149 90 0.35
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (137 bp):
AAAAAAATACTTGTATTCGACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCTA
AAAAATATTTGTATTCGACACATATTGACATATATCTCAACATTTGTGTAGAATTACAACTTCCA
CGTATTT
Found at i:645255 original size:73 final size:73
Alignment explanation
Indices: 644983--645275 Score: 307
Period size: 73 Copynumber: 4.0 Consensus size: 73
644973 CTTGTATTCG
* *
644983 ACACATATCCCAACATTCATGTAGAATTACAACTTCCACATATCCAAAAAATATTTGTATTCGAC
1 ACACATATCCCAACATTCGTGTAGAATTACAACTTCCACATATCTAAAAAATATTTGTATTCGAC
*
645048 ACATATTA
66 ACATATCA
* * * * * * *
645056 ACATATATCTCAACATTTGTGTGGAATTACAACATCCACATATTTAAAAAAAAATACTTGTATTC
1 ACACATATCCCAACATTCGTGTAGAATTACAACTTCCACATATCT---AAAAAATATTTGTATTC
* *
645121 GATACATATTA
63 GACACATATCA
* * * * * *
645132 ACACACATTCCATCATTCGTGTAGAATTATAAATTACACATATCTAAAAAATATTTGTATTCGAC
1 ACACATATCCCAACATTCGTGTAGAATTACAACTTCCACATATCTAAAAAATATTTGTATTCGAC
* *
645197 ATATATCG
66 ACATATCA
* * * * * ** *
645205 ACACATATCCCAGCATTCGTGTAGAATTACAACTTCCACGTATTTGAAAAATACTTCCATTCGCC
1 ACACATATCCCAACATTCGTGTAGAATTACAACTTCCACATATCTAAAAAATATTTGTATTCGAC
645270 ACATAT
66 ACATAT
645276 GAATAATGTA
Statistics
Matches: 176, Mismatches: 41, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
73 117 0.66
76 59 0.34
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (73 bp):
ACACATATCCCAACATTCGTGTAGAATTACAACTTCCACATATCTAAAAAATATTTGTATTCGAC
ACATATCA
Found at i:648463 original size:18 final size:19
Alignment explanation
Indices: 648424--648465 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
648414 TAAACTATGA
648424 TTTAAATTTTAAATTGATT
1 TTTAAATTTTAAATTGATT
648443 TTTAAATTTTTAAA-T-ATT
1 TTTAAA-TTTTAAATTGATT
648461 TTTAA
1 TTTAA
648466 TTAAGTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.36
19 7 0.32
20 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTAAATTTTAAATTGATT
Found at i:653212 original size:18 final size:18
Alignment explanation
Indices: 653183--653249 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
653173 TCCTCCTCCT
* *
653183 CCTCCTCCTCTTCTTCTT
1 CCTCCTCTTCTTCTTCTA
*
653201 CTTCCTCTTCTTCTTCTA
1 CCTCCTCTTCTTCTTCTA
* *
653219 CCTCCACTTCTTCATACT-
1 CCTCCTCTTCTTC-TTCTA
*
653237 CCACCTCTTCTTC
1 CCTCCTCTTCTTC
653250 CATAGTCTCC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
18 37 0.93
19 3 0.08
ACGTcount: A:0.07, C:0.46, G:0.00, T:0.46
Consensus pattern (18 bp):
CCTCCTCTTCTTCTTCTA
Found at i:653228 original size:15 final size:15
Alignment explanation
Indices: 653195--653247 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
653185 TCCTCCTCTT
* **
653195 CTTCTTCTTCCTCTT
1 CTTCTTCTACCTCCA
653210 CTTCTTCTACCTCCA
1 CTTCTTCTACCTCCA
653225 CTTCTTCATA-CTCCA
1 CTTCTTC-TACCTCCA
*
653240 CCTCTTCT
1 CTTCTTCT
653248 TCCATAGTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 1 0.03
15 30 0.91
16 2 0.06
ACGTcount: A:0.09, C:0.43, G:0.00, T:0.47
Consensus pattern (15 bp):
CTTCTTCTACCTCCA
Found at i:655730 original size:24 final size:23
Alignment explanation
Indices: 655676--655731 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
655666 AAAGATTAAT
655676 AATTAAATTTAACTAAAAAATAAA
1 AATTAAA-TTAACTAAAAAATAAA
*
655700 AACTAAATTAAC-AAAATATATAAA
1 AATTAAATTAACTAAAA-A-ATAAA
*
655724 TATTAAAT
1 AATTAAAT
655732 ACATTTGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 4 0.15
23 6 0.22
24 17 0.63
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTAAATTAACTAAAAAATAAA
Found at i:661973 original size:14 final size:14
Alignment explanation
Indices: 661954--662020 Score: 89
Period size: 14 Copynumber: 4.7 Consensus size: 14
661944 GTTTGCAGGT
*
661954 AAAATGTTTTCTGG
1 AAAATGATTTCTGG
661968 AAAATGATTTCTGG
1 AAAATGATTTCTGG
* **
661982 AAAATAATTTCTTAA
1 AAAATGATTTC-TGG
661997 AAAATGATTTCTGG
1 AAAATGATTTCTGG
662011 AAAATGATTT
1 AAAATGATTT
662021 ACTTTTTTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 34 0.76
15 11 0.24
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:668509 original size:100 final size:100
Alignment explanation
Indices: 668336--668786 Score: 503
Period size: 100 Copynumber: 4.5 Consensus size: 100
668326 AAATATATGG
* * * * * * * *
668336 AAGTAATTATCCCGTATCATCGCCGTCACACGATATCTCTTGAGGCAAGGATCAAATGATCAAAT
1 AAGTAATAATCCCATATCAACGCCATCACACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAAT
* *
668401 TAAGACTACGTATTACATAACCATGATTCATACAC
66 TAAGACTACATATTACATAACCATGATTCATATAC
* * * ** ** *
668436 AAGTAATAAGCCCTTATCAAGGCTGTCACACAATTTCTCTCGAGGCAAGGATTGAGTGAGCAAAT
1 AAGTAATAATCCCATATCAACGCCATCACACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAAT
*
668501 TAAGACTACATATTACATAACCGTGATTCATATAC
66 TAAGACTACATATTACATAACCATGATTCATATAC
* * ** * *
668536 AAGTAA-ATATCCCATATCATCGCCATCACACAATTGCTCTTAAGGCGAGGATCAAATGATCAAA
1 AAGTAATA-ATCCCATATCAACGCCATCACACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAA
* *
668600 TCAAGACTACATAGTACATAACCATGATTCATATAC
65 TTAAGACTACATATTACATAACCATGATTCATATAC
* * *
668636 AAGTAATAATCCCATATC-ACTGCCATCACACGATTTCTCTCGTGGCAAGTATCAAATGAGCAAA
1 AAGTAATAATCCCATATCAAC-GCCATCACACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAA
* *
668700 TTAAGACTACATATTACATAACCATTATTCATATGC
65 TTAAGACTACATATTACATAACCATGATTCATATAC
* * * * * * *
668736 AAGTAA-ATATCCCGTATCATCGCCACCACGCGATTTCTCTCAAAGCAAGGA
1 AAGTAATA-ATCCCATATCAACGCCATCACACAATTTCTCTCGAGGCAAGGA
668787 CCGATACAGT
Statistics
Matches: 292, Mismatches: 54, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
99 3 0.01
100 287 0.98
101 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (100 bp):
AAGTAATAATCCCATATCAACGCCATCACACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAAT
TAAGACTACATATTACATAACCATGATTCATATAC
Found at i:668698 original size:200 final size:200
Alignment explanation
Indices: 668336--668760 Score: 609
Period size: 200 Copynumber: 2.1 Consensus size: 200
668326 AAATATATGG
* * * *
668336 AAGTAATTATCCCGTATCATCGCCGTCACACGATATCTCTTGAGGCAAGGATCAAATGATCAAAT
1 AAGTAAATATCCCGTATCATCGCCATCACACAATATCTCTTAAGGCAAGGATCAAATGATCAAAT
* * * * **
668401 TAAGACTACGTATTACATAACCATGATTCATACACAAGTAATAAGCCCTTATCAAGGCTGTCACA
66 CAAGACTACATAGTACATAACCATGATTCATACACAAGTAATAAGCCCATATCAAGGCCATCACA
** * *
668466 CAATTTCTCTCGAGGCAAGGATTGAGTGAGCAAATTAAGACTACATATTACATAACCGTGATTCA
131 CAATTTCTCTCGAGGCAAGGATCAAATGAGCAAATTAAGACTACATATTACATAACCATGATTCA
668531 TATAC
196 TATAC
* *
668536 AAGTAAATATCCCATATCATCGCCATCACACAAT-TGCTCTTAAGGCGAGGATCAAATGATCAAA
1 AAGTAAATATCCCGTATCATCGCCATCACACAATAT-CTCTTAAGGCAAGGATCAAATGATCAAA
* * **
668600 TCAAGACTACATAGTACATAACCATGATTCATATACAAGTAATAATCCCATATCACTGCCATCAC
65 TCAAGACTACATAGTACATAACCATGATTCATACACAAGTAATAAGCCCATATCAAGGCCATCAC
* * * *
668665 ACGATTTCTCTCGTGGCAAGTATCAAATGAGCAAATTAAGACTACATATTACATAACCATTATTC
130 ACAATTTCTCTCGAGGCAAGGATCAAATGAGCAAATTAAGACTACATATTACATAACCATGATTC
*
668730 ATATGC
195 ATATAC
668736 AAGTAAATATCCCGTATCATCGCCA
1 AAGTAAATATCCCGTATCATCGCCA
668761 CCACGCGATT
Statistics
Matches: 198, Mismatches: 26, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
199 1 0.01
200 197 0.99
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (200 bp):
AAGTAAATATCCCGTATCATCGCCATCACACAATATCTCTTAAGGCAAGGATCAAATGATCAAAT
CAAGACTACATAGTACATAACCATGATTCATACACAAGTAATAAGCCCATATCAAGGCCATCACA
CAATTTCTCTCGAGGCAAGGATCAAATGAGCAAATTAAGACTACATATTACATAACCATGATTCA
TATAC
Found at i:669446 original size:24 final size:24
Alignment explanation
Indices: 669397--669454 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
669387 AAAATAACTC
* *
669397 TTAA-TATTTATATTTTATGTAAT
1 TTAACTATTTTTATTTTATATAAT
669420 TTAACTATTTTTATTTT-TATAAT
1 TTAACTATTTTTATTTTATATAAT
* *
669443 TTTACTTTTTTT
1 TTAACTATTTTT
669455 TGACATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
23 19 0.63
24 11 0.37
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (24 bp):
TTAACTATTTTTATTTTATATAAT
Found at i:669669 original size:25 final size:25
Alignment explanation
Indices: 669635--669682 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
669625 TACGAGTTAG
669635 ATTTTTAGAATCAAAGCTAATTTAA
1 ATTTTTAGAATCAAAGCTAATTTAA
669660 ATTTTTAGAATCAAAGCTAATTT
1 ATTTTTAGAATCAAAGCTAATTT
669683 GAGACAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (25 bp):
ATTTTTAGAATCAAAGCTAATTTAA
Found at i:672579 original size:15 final size:16
Alignment explanation
Indices: 672550--672594 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
672540 AATGCGCTTC
*
672550 ATTTATTAT-TTATAT
1 ATTTATTATATAATAT
672565 AATTT-TTATA-AATAT
1 -ATTTATTATATAATAT
672580 ATTTATTATATAATA
1 ATTTATTATATAATA
672595 ATTATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 4 0.16
15 13 0.52
16 8 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTATTATATAATAT
Found at i:673750 original size:44 final size:44
Alignment explanation
Indices: 673698--673787 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
673688 AAAACTAAAA
673698 TTGTAAGGATAATTATTTAGTCCACTAACAATGGAGTAAAATTC
1 TTGTAAGGATAATTATTTAGTCCACTAACAATGGAGTAAAATTC
673742 TTGTAAGGATAATTATTTAGTCCACTAACAATGGAGTAAAATTC
1 TTGTAAGGATAATTATTTAGTCCACTAACAATGGAGTAAAATTC
673786 TT
1 TT
673788 CCTGAGCAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (44 bp):
TTGTAAGGATAATTATTTAGTCCACTAACAATGGAGTAAAATTC
Found at i:677301 original size:43 final size:43
Alignment explanation
Indices: 677247--677337 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
677237 TTAAGCTAAC
* * *
677247 TTCTATGATTATAAAAATGGGTAATTAAAAG-ACAAATTTCAGA
1 TTCTTTGATTATAAAAATGGATAATTAAAAGCA-AAAATTCAGA
*
677290 TTCTTTGATTATTAAAATGGATAATTAAAAGCAAAAATTCAGA
1 TTCTTTGATTATAAAAATGGATAATTAAAAGCAAAAATTCAGA
677333 TTCTT
1 TTCTT
677338 GTAAATTGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 42 0.98
44 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (43 bp):
TTCTTTGATTATAAAAATGGATAATTAAAAGCAAAAATTCAGA
Found at i:677432 original size:16 final size:15
Alignment explanation
Indices: 677411--677457 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
677401 TTATGGAGAT
677411 TTTTAAAATATTAATA
1 TTTTAAAAT-TTAATA
677427 TTTTAAAATTT-ATCA
1 TTTTAAAATTTAAT-A
*
677442 ATTTAAAATGTTAATA
1 TTTTAAAAT-TTAATA
677458 AGTATAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 2 0.07
15 11 0.41
16 12 0.44
17 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
TTTTAAAATTTAATA
Found at i:678220 original size:32 final size:34
Alignment explanation
Indices: 678179--678322 Score: 125
Period size: 32 Copynumber: 4.0 Consensus size: 34
678169 GATTAAACCA
*
678179 ACCAATTTGATCAA-ATCCAAACATCCATG-TGG
1 ACCAATTTGATCAAGATCAAAACATCCATGATGG
*
678211 ACCAATTTGATCAAGTTCAAAACATCCATGATGG
1 ACCAATTTGATCAAGATCAAAACATCCATGATGG
*
678245 AAACAAGAGTTTTCAATTTGATCAA-ATCCAAACATCCATG-TGG
1 --AC---------CAATTTGATCAAGATCAAAACATCCATGATGG
*
678288 ACCAATTTGATCAAGTTCAAAACATCCATGATGG
1 ACCAATTTGATCAAGATCAAAACATCCATGATGG
678322 A
1 A
678323 AACAAGAGTT
Statistics
Matches: 91, Mismatches: 6, Indels: 28
0.73 0.05 0.22
Matches are distributed among these distances:
32 26 0.29
33 26 0.29
34 7 0.08
36 2 0.02
41 2 0.02
43 3 0.03
44 13 0.14
45 12 0.13
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (34 bp):
ACCAATTTGATCAAGATCAAAACATCCATGATGG
Found at i:678264 original size:45 final size:45
Alignment explanation
Indices: 678213--678334 Score: 135
Period size: 33 Copynumber: 3.0 Consensus size: 45
678203 CCATGTGGAC
678213 CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
1 CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
* *
678258 CAATTTGATCAA-ATCCAAACATCCATG-TGG--AC---------
1 CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
678290 CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
1 CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
678335 GCAAGAATCA
Statistics
Matches: 60, Mismatches: 4, Indels: 26
0.67 0.04 0.29
Matches are distributed among these distances:
32 12 0.20
33 13 0.22
34 3 0.05
36 2 0.03
41 2 0.03
43 3 0.05
44 13 0.22
45 12 0.20
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (45 bp):
CAATTTGATCAAGTTCAAAACATCCATGATGGAAACAAGAGTTTT
Found at i:678308 original size:77 final size:77
Alignment explanation
Indices: 678181--678334 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
678171 TTAAACCAAC
678181 CAATTTGATCAAATCCAAACATCCATGTGGACCAATTTGATCAAGTTCAAAACATCCATGATGGA
1 CAATTTGATCAAATCCAAACATCCATGTGGACCAATTTGATCAAGTTCAAAACATCCATGATGGA
678246 AACAAGAGTTTT
66 AACAAGAGTTTT
678258 CAATTTGATCAAATCCAAACATCCATGTGGACCAATTTGATCAAGTTCAAAACATCCATGATGGA
1 CAATTTGATCAAATCCAAACATCCATGTGGACCAATTTGATCAAGTTCAAAACATCCATGATGGA
678323 AACAAGAGTTTT
66 AACAAGAGTTTT
678335 GCAAGAATCA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (77 bp):
CAATTTGATCAAATCCAAACATCCATGTGGACCAATTTGATCAAGTTCAAAACATCCATGATGGA
AACAAGAGTTTT
Found at i:699020 original size:19 final size:18
Alignment explanation
Indices: 698970--699020 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
698960 TTTATGAATT
698970 TTTTATAATTATTTTTAAA
1 TTTTA-AATTATTTTTAAA
* *
698989 -TTTGATTTAATTTTATAAA
1 TTTTAAATT-ATTTT-TAAA
699008 TTTTAAATTATTT
1 TTTTAAATTATTT
699021 ATTGATGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
17 3 0.12
18 8 0.32
19 8 0.32
20 6 0.24
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTAAATTATTTTTAAA
Found at i:700398 original size:6 final size:6
Alignment explanation
Indices: 700389--700418 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
700379 CCAAAAATTA
700389 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
700419 CTTTTGTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:703960 original size:24 final size:24
Alignment explanation
Indices: 703933--703978 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
703923 ATAACCTCTT
703933 TATAAAATT-TTAACAAATGAAAAA
1 TATAAAATTATTAA-AAATGAAAAA
* *
703957 TATATAATTATTAAATATGAAA
1 TATAAAATTATTAAAAATGAAA
703979 TTAAAATAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
TATAAAATTATTAAAAATGAAAAA
Found at i:709022 original size:16 final size:17
Alignment explanation
Indices: 708996--709027 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
708986 GAAATCAAAT
708996 AAAACATTATTTTAGGG
1 AAAACATTATTTTAGGG
709013 AAAA-ATTATTTTAGG
1 AAAACATTATTTTAGG
709028 ACCCTTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.38
Consensus pattern (17 bp):
AAAACATTATTTTAGGG
Found at i:711264 original size:29 final size:30
Alignment explanation
Indices: 711199--711266 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
711189 AATTTTAAAA
*
711199 TTATACATGAATTTTAGTTTAATGTATAATT
1 TTATACATGAATTTGAGTTT-ATGTATAATT
* *
711230 GTATACATGAACTTTGA-TTT-TGTGTAATT
1 TTATACATGAA-TTTGAGTTTATGTATAATT
711259 TTATACAT
1 TTATACAT
711267 AAAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 15 0.47
31 13 0.41
32 4 0.12
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.50
Consensus pattern (30 bp):
TTATACATGAATTTGAGTTTATGTATAATT
Found at i:714100 original size:3 final size:3
Alignment explanation
Indices: 714092--714132 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
714082 ATCCCTTGCT
714092 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
714133 TATAACTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:717924 original size:20 final size:23
Alignment explanation
Indices: 717899--717941 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
717889 AATTTCAAAA
717899 TAAATAT-AAA-TAA-AAAAATT
1 TAAATATCAAATTAAGAAAAATT
717919 TAAATATCAAATTAAGAAAAATT
1 TAAATATCAAATTAAGAAAAATT
717942 GACAAGTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 3 0.15
22 3 0.15
23 7 0.35
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
TAAATATCAAATTAAGAAAAATT
Found at i:723640 original size:15 final size:16
Alignment explanation
Indices: 723620--723651 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
723610 TTTTATAATT
723620 AATTTTAAA-AATAAA
1 AATTTTAAATAATAAA
723635 AATTTTAAATAATAAA
1 AATTTTAAATAATAAA
723651 A
1 A
723652 TGCGGATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
AATTTTAAATAATAAA
Found at i:729028 original size:13 final size:13
Alignment explanation
Indices: 729010--729034 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
729000 ATGAAATGTG
729010 ATTTCAATTTTAA
1 ATTTCAATTTTAA
729023 ATTTCAATTTTA
1 ATTTCAATTTTA
729035 TAGGGATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
ATTTCAATTTTAA
Found at i:729159 original size:19 final size:19
Alignment explanation
Indices: 729122--729159 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
729112 AGGACTCACT
729122 AAGCTCACTGTAAGTTTTTA
1 AAGCTCACTGT-AGTTTTTA
729142 AAGCTCACTTGT-GTTTTT
1 AAGCTCAC-TGTAGTTTTT
729160 TTTTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 8 0.47
21 3 0.18
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (19 bp):
AAGCTCACTGTAGTTTTTA
Found at i:729725 original size:150 final size:149
Alignment explanation
Indices: 729452--729962 Score: 552
Period size: 150 Copynumber: 3.5 Consensus size: 149
729442 AACACTCTTG
*
729452 GTATGAATTCGTAATCTTAAATGATCGTGTTTCAAAAGTTAACTTAGTTTGCATTTTGTGTTT-G
1 GTATGAATTCGTAATCTTAAATGATCGTGTTTCGAAAGTTAACTTAGTTTGCA--TTGTGTTTCG
* * *
729516 AAATTGAAGTTTGAGATCAAAGTTGTTAAGAATATGGTCTGTATATTTGGGAGCCGAGTGTTGGG
64 AAATCGAAGTTTGATATCAAAGTTGTTAAGAATAAGGTCTGTATATTTGGGAGCCGAGTGTTGGG
*
729581 ATGGTAAGTACTTCCCGATTA
129 ATGGGAAGTACTTCCCGATTA
** ** *
729602 GTATGAATTCGTAATCTTAAACCATCACGATTCGAAAGTTAACTTAGTTTGCATTGTGTTTCGAA
1 GTATGAATTCGTAATCTTAAATGATCGTGTTTCGAAAGTTAACTTAGTTTGCATTGTGTTTCGAA
* * * **
729667 ATCGAATTTTGATATCAAAGTTGTTAAGAATACAGTTCTGTTTATTTGGGAGTGGAGTGTTGGGA
66 ATCGAAGTTTGATATCAAAGTTGTTAAGAATA-AGGTCTGTATATTTGGGAGCCGAGTGTTGGGA
* *
729732 TGGGAAGTACTTCCTGATTG
130 TGGGAAGTACTTCCCGATTA
* * * *
729752 GTATGAATTTGTAATCATAAATGATCGTGTTTCGAATGTTAAC-TAGGTTTGCATTTTGTGTTCG
1 GTATGAATTCGTAATCTTAAATGATCGTGTTTCGAAAGTTAACTTA-GTTTGCATTGTGT-TTCG
** **
729816 AAATCGAAGTTTGAGT-TTGAAGTTGTTAAG----A-------ATA-TTGGGAGTGGAGTGTTGG
64 AAATCGAAGTTTGA-TATCAAAGTTGTTAAGAATAAGGTCTGTATATTTGGGAGCCGAGTGTTGG
* *
729868 AATGGGAAGTACTTCCCGATTG
128 GATGGGAAGTACTTCCCGATTA
* * *
729890 GTATGAATTCGTAATCATAAATGATCGTGTTTC-AGATGTTAACTTGGTTTGCATTTTGTGTTT-
1 GTATGAATTCGTAATCTTAAATGATCGTGTTTCGA-AAGTTAACTTAGTTTGCA--TTGTGTTTC
729953 GAAATCGAAG
63 GAAATCGAAG
729963 ATAGAATCTG
Statistics
Matches: 317, Mismatches: 35, Indels: 30
0.83 0.09 0.08
Matches are distributed among these distances:
137 1 0.00
138 95 0.30
139 5 0.02
140 5 0.02
146 1 0.00
148 8 0.03
149 34 0.11
150 138 0.44
151 29 0.09
152 1 0.00
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (149 bp):
GTATGAATTCGTAATCTTAAATGATCGTGTTTCGAAAGTTAACTTAGTTTGCATTGTGTTTCGAA
ATCGAAGTTTGATATCAAAGTTGTTAAGAATAAGGTCTGTATATTTGGGAGCCGAGTGTTGGGAT
GGGAAGTACTTCCCGATTA
Found at i:729932 original size:138 final size:138
Alignment explanation
Indices: 729712--729962 Score: 441
Period size: 138 Copynumber: 1.8 Consensus size: 138
729702 TTCTGTTTAT
* * *
729712 TTGGGAGTGGAGTGTTGGGATGGGAAGTACTTCCTGATTGGTATGAATTTGTAATCATAAATGAT
1 TTGGGAGTGGAGTGTTGGAATGGGAAGTACTTCCCGATTGGTATGAATTCGTAATCATAAATGAT
729777 CGTGTTTCGAATGTTAACTAGGTTTGCATTTTGTGTTCGAAATCGAAGTTTGAGTTTGAAGTTGT
66 CGTGTTTCGAATGTTAACTAGGTTTGCATTTTGTGTTCGAAATCGAAGTTTGAGTTTGAAGTTGT
729842 TAAGAATA
131 TAAGAATA
729850 TTGGGAGTGGAGTGTTGGAATGGGAAGTACTTCCCGATTGGTATGAATTCGTAATCATAAATGAT
1 TTGGGAGTGGAGTGTTGGAATGGGAAGTACTTCCCGATTGGTATGAATTCGTAATCATAAATGAT
* *
729915 CGTGTTTC-AGATGTTAACTTGGTTTGCATTTTGTGTTTGAAATCGAAG
66 CGTGTTTCGA-ATGTTAACTAGGTTTGCATTTTGTGTTCGAAATCGAAG
729963 ATAGAATCTG
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
137 1 0.01
138 106 0.99
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.38
Consensus pattern (138 bp):
TTGGGAGTGGAGTGTTGGAATGGGAAGTACTTCCCGATTGGTATGAATTCGTAATCATAAATGAT
CGTGTTTCGAATGTTAACTAGGTTTGCATTTTGTGTTCGAAATCGAAGTTTGAGTTTGAAGTTGT
TAAGAATA
Found at i:734538 original size:26 final size:26
Alignment explanation
Indices: 734502--734610 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
734492 TGATACAAAT
*
734502 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
734528 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
734554 TGATAATGGGTTAGGT-AATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
734579 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
734605 TGATAA
1 TGATAA
734611 GAATTTCATG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 24 0.30
26 55 0.70
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:734594 original size:51 final size:52
Alignment explanation
Indices: 734502--734610 Score: 166
Period size: 51 Copynumber: 2.1 Consensus size: 52
734492 TGATACAAAT
734502 TGATAATAGGTTAGGTAAATATTCCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATATTCCATGATAATAGGTTAGGTAAATGTTCCA
* * * * *
734554 TGATAATGGGTTAGGT-AATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATATTCCATGATAATAGGTTAGGTAAATGTTCCA
734605 TGATAA
1 TGATAA
734611 GAATTTCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
51 37 0.71
52 15 0.29
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATATTCCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:737585 original size:14 final size:14
Alignment explanation
Indices: 737534--737588 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
737524 ATGTATAGGG
*
737534 GGTTTGCATGCATCAA
1 GGTTTGCA--CATAAA
*
737550 GGTTCGCACATAAA
1 GGTTTGCACATAAA
*
737564 GAGTTTGCACTTAAA
1 G-GTTTGCACATAAA
737579 GGTTTGCACA
1 GGTTTGCACA
737589 AGTAAGCATG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 14 0.42
15 12 0.36
16 7 0.21
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (14 bp):
GGTTTGCACATAAA
Found at i:737684 original size:22 final size:22
Alignment explanation
Indices: 737602--737688 Score: 66
Period size: 22 Copynumber: 3.9 Consensus size: 22
737592 AAGCATGCGA
737602 GGTTCACATGGTAAACTAGGTAG
1 GGTTCACATGGTAAA-TAGGTAG
* * * * * *
737625 GGTTTACATGTTTAGACATGTAA
1 GGTTCACATG-GTAAATAGGTAG
** **
737648 GGTTTGCATATTAAATAGGTAG
1 GGTTCACATGGTAAATAGGTAG
737670 GGTTCACATGGTAAATAGG
1 GGTTCACATGGTAAATAGG
737689 GTTCGCATGT
Statistics
Matches: 47, Mismatches: 16, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
22 23 0.49
23 21 0.45
24 3 0.06
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (22 bp):
GGTTCACATGGTAAATAGGTAG
Found at i:737690 original size:18 final size:18
Alignment explanation
Indices: 737667--737702 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
737657 ATTAAATAGG
737667 TAGGGTTCACATGGTAAA
1 TAGGGTTCACATGGTAAA
* *
737685 TAGGGTTCGCATGTTAAA
1 TAGGGTTCACATGGTAAA
737703 CATGTAAGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.31
Consensus pattern (18 bp):
TAGGGTTCACATGGTAAA
Found at i:737825 original size:15 final size:15
Alignment explanation
Indices: 737805--737857 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
737795 ATCAACTACA
737805 GTTCGCCTAATAGGG
1 GTTCGCCTAATAGGG
*
737820 GTTCGCCT-ATAGGA
1 GTTCGCCTAATAGGG
* *
737834 GTTCACATAA-AGGGG
1 GTTCGCCTAATA-GGG
737849 GTTCGCCTA
1 GTTCGCCTA
737858 TTAATTTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (15 bp):
GTTCGCCTAATAGGG
Found at i:737837 original size:14 final size:15
Alignment explanation
Indices: 737804--737837 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
737794 TATCAACTAC
737804 AGTTCGCCTAATAGG
1 AGTTCGCCTAATAGG
*
737819 GGTTCGCCT-ATAGG
1 AGTTCGCCTAATAGG
737833 AGTTC
1 AGTTC
737838 ACATAAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (15 bp):
AGTTCGCCTAATAGG
Found at i:738958 original size:41 final size:40
Alignment explanation
Indices: 738909--739027 Score: 118
Period size: 37 Copynumber: 3.0 Consensus size: 40
738899 TTTGACTTTG
*
738909 AGTTGATGAGACACTGGGTATCAATTTATTACTTCGGATTA
1 AGTTGATGAGACACTGGGTGTCAA-TTATTACTTCGGATTA
* * * *
738950 ATTTGATGAGGCACTGGGTGCCAA-T-TTACTTC-GATTT
1 AGTTGATGAGACACTGGGTGTCAATTATTACTTCGGATTA
* * * *
738987 AGCTGATGAGACACTAGGTGTCAACTTATTGCTTCGAATTA
1 AGTTGATGAGACACTGGGTGTCAA-TTATTACTTCGGATTA
739028 TCCGATGAGG
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
37 23 0.38
38 7 0.11
39 2 0.03
40 6 0.10
41 23 0.38
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (40 bp):
AGTTGATGAGACACTGGGTGTCAATTATTACTTCGGATTA
Found at i:741569 original size:18 final size:17
Alignment explanation
Indices: 741548--741606 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 17
741538 TTATTACTTA
741548 TATTATCATTATTATCAT
1 TATTAT-ATTATTATCAT
*
741566 TATTATTATTA-TATCAC
1 TATTA-TATTATTATCAT
*
741583 TATT-TATTATTGT-AT
1 TATTATATTATTATCAT
741598 TATTATATT
1 TATTATATT
741607 CATTTTCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
15 10 0.29
16 6 0.17
17 9 0.26
18 9 0.26
19 1 0.03
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (17 bp):
TATTATATTATTATCAT
Found at i:744317 original size:12 final size:11
Alignment explanation
Indices: 744298--744327 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
744288 AAATTTAAAT
744298 TTAAATTAATA
1 TTAAATTAATA
744309 TTAATATTAATA
1 TTAA-ATTAATA
744321 TTAAATT
1 TTAAATT
744328 GTAAACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAAATTAATA
Found at i:888111 original size:18 final size:18
Alignment explanation
Indices: 888074--888112 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
888064 ATATATATAA
* * *
888074 ATGTGTATGTGCATATTT
1 ATGTGTACGTGCAAAGTT
888092 ATGTGTACGTGCAAAGTT
1 ATGTGTACGTGCAAAGTT
888110 ATG
1 ATG
888113 AAATATATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.41
Consensus pattern (18 bp):
ATGTGTACGTGCAAAGTT
Found at i:897717 original size:52 final size:49
Alignment explanation
Indices: 897632--897998 Score: 431
Period size: 46 Copynumber: 7.6 Consensus size: 49
897622 TTTGAGTACT
* **
897632 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
897678 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
897730 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
897776 TCTGATCAAGTGAC---AAAGTGATAGGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
897822 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
897874 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* **
897926 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
897972 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
897999 GCTACACTTA
Statistics
Matches: 290, Mismatches: 17, Indels: 28
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 2 0.01
50 1 0.00
52 132 0.46
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:897752 original size:98 final size:97
Alignment explanation
Indices: 897632--897998 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
897622 TTTGAGTACT
* *
897632 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-
*
897697 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
65 GAAAGTGATAAGTGATAGCTTCGGCTATACTTA
* *
897730 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
897790 AAAGTGATAGGTGATAGCTTCAGCTACACTTA
66 AAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
897822 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTG---A-T--AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGA
897887 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
60 CAAGTG-AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* * * *
897926 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGAC-AAGT
897991 GATAAGTG
65 GA-AAGTG
897999 GCTACACTTA
Statistics
Matches: 238, Mismatches: 17, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
92 40 0.17
95 1 0.00
96 1 0.00
98 145 0.61
99 10 0.04
101 1 0.00
104 40 0.17
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (97 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:898006 original size:37 final size:37
Alignment explanation
Indices: 897962--898107 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
897952 GATAGCTTTA
*
897962 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
897999 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* *
898036 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
898073 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
898108 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:898051 original size:150 final size:143
Alignment explanation
Indices: 897632--898003 Score: 373
Period size: 144 Copynumber: 2.6 Consensus size: 143
897622 TTTGAGTACT
* * * * *
897632 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * * * *
897697 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTG---A-T--AAAGTGATAAGT
61 GAAAGTGATAAGT--GAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
897756 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
* * *
897776 TCTGATCAAGTGACAAAGTGATAGGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-----
* * * * *
897841 GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGT
61 GAAAGTGATAAGTG--AGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGT
897906 GATAGCTTCGGCTATACTTA
124 GATAGCTTCGGCTATACTTA
*
897926 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC-AAAG
1 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
897990 TGATAAGTG-GCTAC
66 TGATAAGTGAGCTAC
898004 ACTTATCTGA
Statistics
Matches: 209, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
141 4 0.02
144 115 0.55
147 1 0.00
148 1 0.00
150 88 0.42
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.29
Consensus pattern (143 bp):
TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACGAAAG
TGATAAGTGAGCTACGACTACACTGATCAGAACAAGTGACAAGTGAAAAGTGATAAGTGATAGCT
TCGGCTATACTTA
Found at i:901857 original size:45 final size:45
Alignment explanation
Indices: 901793--901932 Score: 226
Period size: 45 Copynumber: 3.1 Consensus size: 45
901783 TCGAAAGCCT
* *
901793 GAATAGTATCTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC
1 GAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCC
**
901838 GAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCTT
1 GAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCC
* *
901883 GAATAGTGTCTCACCAGCATAATAGCTTGCTAGGCTCAAAGGCCC
1 GAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCC
901928 GAATA
1 GAATA
901933 TAATACCAGC
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (45 bp):
GAATAGTGTCTCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCC
Found at i:901974 original size:38 final size:38
Alignment explanation
Indices: 901925--902065 Score: 201
Period size: 38 Copynumber: 3.7 Consensus size: 38
901915 GGCTCAAAGG
* * * *
901925 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
901963 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
902001 CCCGGATATATTACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* **
902039 CCCGGATATATTTTCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAGCCT
902066 ACAGGTCTTT
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 95 1.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:903838 original size:20 final size:21
Alignment explanation
Indices: 903807--903847 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
903797 GTAGGAATGT
903807 TTTCTAAAAATTATGCATTGA
1 TTTCTAAAAATTATGCATTGA
*
903828 TTTCT-AAAATTTTGCATTGA
1 TTTCTAAAAATTATGCATTGA
903848 CATTATCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (21 bp):
TTTCTAAAAATTATGCATTGA
Found at i:906517 original size:20 final size:21
Alignment explanation
Indices: 906469--906520 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
906459 AAACCTTGGT
*
906469 AGGTATCGATA-CTTTTCTTA
1 AGGTATCGATATATTTTCTTA
*
906489 AGGTGTCGATATATTTTC-TA
1 AGGTATCGATATATTTTCTTA
*
906509 ATGTATCGATAT
1 AGGTATCGATAT
906521 TTCTGCTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (21 bp):
AGGTATCGATATATTTTCTTA
Found at i:907060 original size:2 final size:2
Alignment explanation
Indices: 907053--907077 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
907043 GAGTAAAAAT
907053 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
907078 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:910531 original size:22 final size:22
Alignment explanation
Indices: 910482--910535 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 22
910472 GAAATTGAAA
910482 TAAAAAAAATATTAGCTTCTAT
1 TAAAAAAAATATTAGCTTCTAT
*
910504 T--TAAAAATATTAGC-TCTTAT
1 TAAAAAAAATATTAGCTTC-TAT
910524 TAAAAAAAATAT
1 TAAAAAAAATAT
910536 AGCAACAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 2 0.07
20 16 0.59
22 9 0.33
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.37
Consensus pattern (22 bp):
TAAAAAAAATATTAGCTTCTAT
Found at i:910865 original size:22 final size:22
Alignment explanation
Indices: 910840--910882 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
910830 TCTCCCTATT
910840 TTGCTACCATTTCATTATTATG
1 TTGCTACCATTTCATTATTATG
* **
910862 TTGCTACTATTTTGTTATTAT
1 TTGCTACCATTTCATTATTAT
910883 TGTTTAGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.56
Consensus pattern (22 bp):
TTGCTACCATTTCATTATTATG
Found at i:920312 original size:15 final size:15
Alignment explanation
Indices: 920292--920321 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
920282 AAAGCAAATA
920292 AACTAGGAAGATCAT
1 AACTAGGAAGATCAT
920307 AACTAGGAAGATCAT
1 AACTAGGAAGATCAT
920322 TTTATAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (15 bp):
AACTAGGAAGATCAT
Found at i:941305 original size:13 final size:13
Alignment explanation
Indices: 941287--941312 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
941277 TTATCCGTAT
941287 CCTTCTTCATAAC
1 CCTTCTTCATAAC
941300 CCTTCTTCATAAC
1 CCTTCTTCATAAC
941313 GTTAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.38
Consensus pattern (13 bp):
CCTTCTTCATAAC
Found at i:944670 original size:77 final size:77
Alignment explanation
Indices: 944589--944752 Score: 256
Period size: 77 Copynumber: 2.1 Consensus size: 77
944579 TCTGCTTGGA
* *
944589 GAGGTAAAGTAAATTCTGGGTATTTCTTTGATTTAATTTTCTGGGTTTCTTTTTGGTGTTTGTTT
1 GAGGTAAAGTAAATTCTGGGTATTTCTTTGATTTAACTTTCTGGATTTCTTTTTGGTGTTTGTTT
*
944654 GGTGAAAAAATG
66 GATGAAAAAATG
* **
944666 GAGGTAAAGTAAATTCTGGGTGTTTCTTTGATTTTGCTTTCTGGATTTCTTTTTGGTGTTTGTTT
1 GAGGTAAAGTAAATTCTGGGTATTTCTTTGATTTAACTTTCTGGATTTCTTTTTGGTGTTTGTTT
*
944731 GATGAGAAAATG
66 GATGAAAAAATG
*
944743 AAGGTAAAGT
1 GAGGTAAAGT
944753 TTAACAATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.23, C:0.05, G:0.26, T:0.46
Consensus pattern (77 bp):
GAGGTAAAGTAAATTCTGGGTATTTCTTTGATTTAACTTTCTGGATTTCTTTTTGGTGTTTGTTT
GATGAAAAAATG
Found at i:956190 original size:15 final size:14
Alignment explanation
Indices: 956170--956202 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
956160 GATTAAATCA
956170 ATTTTTAATAATATT
1 ATTTTTAATAAT-TT
956185 ATTTTTAATAATTT
1 ATTTTTAATAATTT
956199 ATTT
1 ATTT
956203 AATTAAACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
ATTTTTAATAATTT
Found at i:957537 original size:31 final size:29
Alignment explanation
Indices: 957476--957543 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
957466 ACAGTAATAG
*
957476 ATTTTAGTTTATATACTTTGATTTGATCA
1 ATTTTAGTTTATATACTTTGATTAGATCA
957505 ATTTTAGTTTATATACTTTTTGAATTAG-TCA
1 ATTTTAGTTTATATAC--TTTG-ATTAGATCA
957536 ATTTTAGT
1 ATTTTAGT
957544 ATTTGTCTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
29 16 0.46
31 15 0.43
32 4 0.11
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (29 bp):
ATTTTAGTTTATATACTTTGATTAGATCA
Found at i:958267 original size:13 final size:13
Alignment explanation
Indices: 958233--958290 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 13
958223 AAATTTTTCC
958233 AAAGCACTTCTCA
1 AAAGCACTTCTCA
958246 AAA-CTACTTCTCA
1 AAAGC-ACTTCTCA
*
958259 AAAGCACTT-TTA
1 AAAGCACTTCTCA
* *
958271 CACAGCACTTTTCA
1 -AAAGCACTTCTCA
958285 AAAGCA
1 AAAGCA
958291 ATGAAGAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.08
13 31 0.84
14 3 0.08
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.26
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:960750 original size:70 final size:70
Alignment explanation
Indices: 960637--960772 Score: 272
Period size: 70 Copynumber: 1.9 Consensus size: 70
960627 AAATGTTCAG
960637 ATTGGTATATAAGTACGGTTAGATCCAATCTCTTGATCCCCATGGAAAGGAAAAAGAATTACACA
1 ATTGGTATATAAGTACGGTTAGATCCAATCTCTTGATCCCCATGGAAAGGAAAAAGAATTACACA
960702 TGAAC
66 TGAAC
960707 ATTGGTATATAAGTACGGTTAGATCCAATCTCTTGATCCCCATGGAAAGGAAAAAGAATTACACA
1 ATTGGTATATAAGTACGGTTAGATCCAATCTCTTGATCCCCATGGAAAGGAAAAAGAATTACACA
960772 T
66 T
960773 TCTTCTTTCT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.26
Consensus pattern (70 bp):
ATTGGTATATAAGTACGGTTAGATCCAATCTCTTGATCCCCATGGAAAGGAAAAAGAATTACACA
TGAAC
Found at i:963881 original size:20 final size:20
Alignment explanation
Indices: 963856--963894 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
963846 ACAAAGAAAC
*
963856 TAAGTTTAAGTACTTAATTG
1 TAAGTTCAAGTACTTAATTG
963876 TAAGTTCAAGTACTTAATT
1 TAAGTTCAAGTACTTAATT
963895 AGATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.44
Consensus pattern (20 bp):
TAAGTTCAAGTACTTAATTG
Found at i:965551 original size:2 final size:2
Alignment explanation
Indices: 965544--965568 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
965534 CTAATAAATT
965544 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
965569 TTAGAATGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:969114 original size:196 final size:196
Alignment explanation
Indices: 968895--969287 Score: 664
Period size: 196 Copynumber: 2.0 Consensus size: 196
968885 AGTAAAGTTC
* * *
968895 AATACATTTGGATGCATAATTTAGATTTTTTTTTGAT-AATTAAGTTGATCTCAATGCTTATGTT
1 AATACATTTGGATACAGAATTTAGATTTTTTTTT-ATAAATTAAGTTGATCTCAATGCTTATATT
* * *
968959 ATTGTTTCGCAACGAATTAAATGGTTTGAAAAGAGTAAGGTTAAT-GATTAGGAGGATTTAGTGT
65 ATTGTTTCGCAAAGAATTAAATGGTTCG-AAAGAGTAAGGTTAATCGATTAAGAGGATTTAGTGT
*
969023 TTTATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTTGTTTTGTTTTGTTCGA
129 TTTATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGA
969088 ATT
194 ATT
969091 AATACATTTGGATACAGAATTTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
1 AATACATTTGGATACAGAATTTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
* * *
969156 TTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
66 TTGTTTCGCAAAGAATTAAATGGTTCGAAAGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
969221 TATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
131 TATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
969286 T
196 T
969287 A
1 A
969288 GATGCTTGAA
Statistics
Matches: 185, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
195 17 0.09
196 168 0.91
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (196 bp):
AATACATTTGGATACAGAATTTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
TTGTTTCGCAAAGAATTAAATGGTTCGAAAGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
TATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
T
Found at i:969470 original size:218 final size:219
Alignment explanation
Indices: 969091--969484 Score: 675
Period size: 218 Copynumber: 1.8 Consensus size: 219
969081 TGTTCGAATT
* *
969091 AATACATTTGGATACAGAATTTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
1 AATACATTGGGATACAGAAATTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
969156 TTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
66 TTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
*
969221 TATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
131 TATGGTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
969286 TAGATGCTTGAATTAGTAAAGTTC
196 TAGATGCTTGAATTAGTAAAGTTC
* *
969310 AATACATTGGGATACAGAAATTGGATTTTTTTTT-TTAATTAAGTTGATCTCAATGCTTATATTA
1 AATACATTGGGATACAGAAATTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
* * * * *
969374 TTGTTTCGTAACGAGTTAGATGGTTTGAAGGAGTAAGGTTAATTGATTAGGAGGATTTAGTGTTT
66 TTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
969439 TATGGTTGATAT-TAGATTTTGATTTTCAGGGAAAATTTGAATTTTT
131 TATGGTTGAT-TCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTT
969485 TTTTTGGTTG
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
218 132 0.80
219 32 0.20
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (219 bp):
AATACATTGGGATACAGAAATTAGATTTTTTTTTATAAATTAAGTTGATCTCAATGCTTATATTA
TTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTAATCGATTAAGAGGATTTAGTGTTT
TATGGTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAATTTTTGGTTTTGTTTTGTTCGAAT
TAGATGCTTGAATTAGTAAAGTTC
Found at i:969587 original size:218 final size:216
Alignment explanation
Indices: 969132--969639 Score: 575
Period size: 218 Copynumber: 2.3 Consensus size: 216
969122 TTTATAAATT
*
969132 AAGTTGATCTCAATGCTTATATTATTGTTTCGTAAAGAGTTAAATGGTTCGAAGGAGTAAGGTTA
1 AAGTTGATCTCAATGCTTATATTATTGTTTCGTAAAGAGTTAAATGGTTTGAAGGAGTAAGGTTA
* *
969197 ATCGATTAAGAGGATTTAGTGTTTTATGTTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAA
66 ATTGATTAAGAGGATTTAGTGTTTTATGGTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAA
* * *
969262 TTTTTGGTTTTGTTTTGTTCGAATTAGATGCTTGAATTAGTAAAGTTCAATACATTGGGATACAG
131 -TTTT-GTTTTGTTTGGTTCGAAATAGATGCTTGAATTAGTAAAGCTCAATACATTGGGATACAG
******** **
969327 AAATTGGATTTTTTTTTTTAATT
194 AAATTGGATTTAAAGAAAAAAAA
* *
969350 AAGTTGATCTCAATGCTTATATTATTGTTTCGTAACGAGTTAGATGGTTTGAAGGAGTAAGGTTA
1 AAGTTGATCTCAATGCTTATATTATTGTTTCGTAAAGAGTTAAATGGTTTGAAGGAGTAAGGTTA
*
969415 ATTGATTAGGAGGATTTAGTGTTTTATGGTTGATAT-TAGATTTTGATTTTCAGGGAAAATTTGA
66 ATTGATTAAGAGGATTTAGTGTTTTATGGTTGAT-TCTAGATTTTGATTTTCAGGGAAAATTTGA
* * * *
969479 A-TTT-TTTT-TTTGGTT-GAAATAGATGTTTGAATTAGT-AAGCTCTATGCATTTGGATTACAG
130 ATTTTGTTTTGTTTGGTTCGAAATAGATGCTTGAATTAGTAAAGCTCAATACATTGGGA-TACAG
969539 -AA-TGCGCAAAATTTAAAAAGAAAAAAAA
194 AAATTG-G----ATTT--AAAGAAAAAAAA
* * * * * *
969567 ACAGTTTATCT-AAGTGCTTATGTTATTGTTTCATAATGAATTAAATGGTTTGAAAGAGTAAGGT
1 A-AGTTGATCTCAA-TGCTTATATTATTGTTTCGTAAAGAGTTAAATGGTTTGAAGGAGTAAGGT
969631 TAATTGATT
64 TAATTGATT
969640 TGGATTACAG
Statistics
Matches: 249, Mismatches: 30, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
210 2 0.01
211 17 0.07
212 24 0.10
213 6 0.02
214 4 0.02
215 4 0.02
216 3 0.01
217 5 0.02
218 183 0.73
219 1 0.00
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (216 bp):
AAGTTGATCTCAATGCTTATATTATTGTTTCGTAAAGAGTTAAATGGTTTGAAGGAGTAAGGTTA
ATTGATTAAGAGGATTTAGTGTTTTATGGTTGATTCTAGATTTTGATTTTCAGGGAAAATTTGAA
TTTTGTTTTGTTTGGTTCGAAATAGATGCTTGAATTAGTAAAGCTCAATACATTGGGATACAGAA
ATTGGATTTAAAGAAAAAAAA
Found at i:976152 original size:10 final size:10
Alignment explanation
Indices: 976137--976161 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
976127 TATTATTATA
976137 TTTTTTTTCT
1 TTTTTTTTCT
976147 TTTTTTTTCT
1 TTTTTTTTCT
976157 TTTTT
1 TTTTT
976162 GGGGTCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:979606 original size:37 final size:37
Alignment explanation
Indices: 979556--979630 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
979546 AATTAATTAA
979556 ATCCCTTAATCCAAAGGAAATTGTCATTTGTTTATTT
1 ATCCCTTAATCCAAAGGAAATTGTCATTTGTTTATTT
979593 ATCCCTTAATCCAAAGGAAATTGTCATTTGTTTATTT
1 ATCCCTTAATCCAAAGGAAATTGTCATTTGTTTATTT
979630 A
1 A
979631 CTTATTTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.43
Consensus pattern (37 bp):
ATCCCTTAATCCAAAGGAAATTGTCATTTGTTTATTT
Found at i:980652 original size:163 final size:165
Alignment explanation
Indices: 980343--981093 Score: 602
Period size: 163 Copynumber: 4.5 Consensus size: 165
980333 GGTATTAGAT
* * * * ** * * * *
980343 ACTTACTCGAGTTCGGCTAATGTAAGAAGTGTATAATGAATTCTCAAAATTATACTTACCTTATT
1 ACTTACTCGAGTTTGGCTAAAGTAAGAA-TGTGTCATGAATTCTCCGAACTATGCTTACTTTACT
* * * * * * * *
980408 CGAACTCTT-TTTTTACTCTAAAATACCCATGTTTGAAACTTGTTTTTGACACT-TATTCAATCA
65 -AAACTCTTCATTTT-CTCTAAAATACCCATGCTTGATATTTGTTTTTGACA-TGCATGCAAACA
* * *
980471 T-AGGTTTTAATTGTTTTTAGACATACATA-T-TA-AAC
127 TGAGTTTTTGATTGTTTTTAGACATATATACTATATAAC
* * *
980506 ACTTACTCGAGTTTGGCTAATGCAA-AAAGTGTCATGAATTCTCCGAACTATGCTTACTTTACTT
1 ACTTACTCGAGTTTGGCTAAAGTAAGAATGTGTCATGAATTCTCCGAACTATGCTTACTTTAC-T
* * * * * * *
980570 AAACTTTTCATTTTCTCTAAAACACCCGTGCTCGATATTTGTTTTTGATATGCATGCCAACATGG
65 AAACTCTTCATTTTCTCTAAAATACCCATGCTTGATATTTGTTTTTGACATGCATGCAAACATGA
* * *
980635 GTTTTTGGTTAGTTTTTAGACATGTATACTTGTATAAC
130 GTTTTTGATT-GTTTTTAGACATATATAC-TATATAAC
* * ** *
980673 ACATTTATTTGAGTTCAGCTAAAGTAAGAGATGTGTCATGAATTCTCCGAATTATG------TT-
1 AC--TTACTCGAGTTTGGCTAAAGTAAGA-ATGTGTCATGAATTCTCCGAACTATGCTTACTTTA
* *
980731 C-AAACTCTTCATTTTCTCTAAAATACGCATGCTTGATATTTGTTTTTGACATGCATGCAAATAT
63 CTAAACTCTTCATTTTCTCTAAAATACCCATGCTTGATATTTGTTTTTGACATGCATGCAAACAT
980795 GAGTTTTTGATTGTTTTTAGACATATGTATACTCATATCACAC
128 GAGTTTTTGATTGTTTTTAGACATA--TATACT-ATAT-A-AC
* * *
980838 ATTTACTCGAGTTTGGCTAAAGTAAGAAGTGTGTCATGAATTATACGAACTATGCTTACTTTACT
1 ACTTACTCGAGTTTGGCTAAAGTAAGAA-TGTGTCATGAATTCTCCGAACTATGCTTACTTTACT
* *** * *
980903 CAAACTCTTCATTTTCTCTAAAATACCAATGCTTGATATTTGTTTTTGACACATATACAAACACG
65 -AAACTCTTCATTTTCTCTAAAATACCCATGCTTGATATTTGTTTTTGACATGCATGCAAACATG
* ** * * * * *
980968 AG-TTTTGATTATCATTAAACATGTACACT-TGTATC
129 AGTTTTTGATTGTTTTTAGACATATATACTATATAAC
** * * * *
981003 ACGAACTCAAGTTTGGCTAAAGTAAGAAGTGTGTCATGAATTCTTCGGA-TCATGCTTATTTTAC
1 ACTTACTCGAGTTTGGCTAAAGTAAGAA-TGTGTCATGAATTCTCCGAACT-ATGCTTACTTTA-
* *
981067 CCAAACCCTTCATTTTCTCTAAAATAC
63 CTAAACTCTTCATTTTCTCTAAAATAC
981094 TCATATTTGA
Statistics
Matches: 473, Mismatches: 85, Indels: 58
0.77 0.14 0.09
Matches are distributed among these distances:
160 1 0.00
161 80 0.17
162 81 0.17
163 89 0.19
164 3 0.01
165 84 0.18
166 4 0.01
167 7 0.01
169 24 0.05
170 2 0.00
171 40 0.08
172 58 0.12
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (165 bp):
ACTTACTCGAGTTTGGCTAAAGTAAGAATGTGTCATGAATTCTCCGAACTATGCTTACTTTACTA
AACTCTTCATTTTCTCTAAAATACCCATGCTTGATATTTGTTTTTGACATGCATGCAAACATGAG
TTTTTGATTGTTTTTAGACATATATACTATATAAC
Found at i:980771 original size:162 final size:166
Alignment explanation
Indices: 980534--980953 Score: 458
Period size: 162 Copynumber: 2.5 Consensus size: 166
980524 AATGCAAAAA
* * * * * * *
980534 GTGTCATGAATTCTCCGAACTATGCTTACTTTACTTAAACTTTTCATTTTCTCTAAAACACCCGT
1 GTGTCATGAATTATACGAAC-A--CTTACTGTA-TCAAACTCTTCATTTTCTCTAAAATA-CCAT
* * * * *
980599 GCTCGATATTTGTTTTTGATATGCATGCCAACATGGGTTTTTGGTTAGTTTTTAGAC-ATGTATA
61 GCTTGATATTTGTTTTTGACATGCATGCAAACATGAGTTTTTGATT-GTTTTTAGACAATGTATA
** * *
980663 CTTGTATAACACATTTATTTGAGTTCAGCTAAAGTAAG-AGAT
125 CTCATATAACACATTTACTCGAGTTCAGCTAAAGTAAGAAG-T
* *
980705 GTGTCATGAATTCTCCG-A-A-TTA-TGT-TCAAACTCTTCATTTTCTCTAAAATACGCATGCTT
1 GTGTCATGAATTATACGAACACTTACTGTATCAAACTCTTCATTTTCTCTAAAATAC-CATGCTT
*
980765 GATATTTGTTTTTGACATGCATGCAAATATGAGTTTTTGATTGTTTTTAGACATATGTATACTCA
65 GATATTTGTTTTTGACATGCATGCAAACATGAGTTTTTGATTGTTTTTAGACA-ATGTATACTCA
* **
980830 TATCACACATTTACTCGAGTTTGGCTAAAGTAAGAAGT
129 TATAACACATTTACTCGAGTTCAGCTAAAGTAAGAAGT
*
980868 GTGTCATGAATTATACGAACTATGCTTACTTTACTCAAACTCTTCATTTTCTCTAAAATACCAAT
1 GTGTCATGAATTATACGAAC-A--CTTACTGTA-TCAAACTCTTCATTTTCTCTAAAATACC-AT
980933 GCTTGATATTTGTTTTTGACA
61 GCTTGATATTTGTTTTTGACA
980954 CATATACAAA
Statistics
Matches: 214, Mismatches: 21, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
161 11 0.05
162 65 0.30
163 54 0.25
164 5 0.02
165 3 0.01
166 1 0.00
168 1 0.00
169 3 0.01
170 3 0.01
171 18 0.08
172 50 0.23
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (166 bp):
GTGTCATGAATTATACGAACACTTACTGTATCAAACTCTTCATTTTCTCTAAAATACCATGCTTG
ATATTTGTTTTTGACATGCATGCAAACATGAGTTTTTGATTGTTTTTAGACAATGTATACTCATA
TAACACATTTACTCGAGTTCAGCTAAAGTAAGAAGT
Found at i:981090 original size:165 final size:170
Alignment explanation
Indices: 980731--981093 Score: 452
Period size: 165 Copynumber: 2.2 Consensus size: 170
980721 GAATTATGTT
** * * *
980731 CAAACTCTTCATTTTCTCTAAAATACGCATGCTTGATATTTGTTTTTGACATGCATGCAAATATG
1 CAAACTCTTCATTTTCTCTAAAATACGCATGCTTGATATTTGTTTTTGACACACATACAAACACG
* ** * * *
980796 AGTTTTTGATTGTTTTTAGACATATGTATACTCATATCACACATTTACTCGAGTTTGGCTAAAGT
66 AGTTTTTGATTATCATTAGACACATGTACACTCATATCACACA--TACTCAAGTTTGGCTAAAGT
*
980861 AAGAAGTGTGTCATGAATTATACGAACTATGCTTACTTTACT
129 AAGAAGTGTGTCATGAATTATACGAACTATGCTTACTTTACC
*
980903 CAAACTCTTCATTTTCTCTAAAATAC-CAATGCTTGATATTTGTTTTTGACACATATACAAACAC
1 CAAACTCTTCATTTTCTCTAAAATACGC-ATGCTTGATATTTGTTTTTGACACACATACAAACAC
** *
980967 GAG-TTTTGATTATCATTA-A-ACATGTACACTTGTATCAC-GA-ACTCAAGTTTGGCTAAAGTA
65 GAGTTTTTGATTATCATTAGACACATGTACACTCATATCACACATACTCAAGTTTGGCTAAAGTA
* * * *
981027 AGAAGTGTGTCATGAATTCTTCGGA-TCATGCTTATTTTACC
130 AGAAGTGTGTCATGAATTATACGAACT-ATGCTTACTTTACC
*
981068 CAAACCCTTCATTTTCTCTAAAATAC
1 CAAACTCTTCATTTTCTCTAAAATAC
981094 TCATATTTGA
Statistics
Matches: 168, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
164 1 0.01
165 78 0.46
168 1 0.01
169 15 0.09
170 1 0.01
171 13 0.08
172 59 0.35
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (170 bp):
CAAACTCTTCATTTTCTCTAAAATACGCATGCTTGATATTTGTTTTTGACACACATACAAACACG
AGTTTTTGATTATCATTAGACACATGTACACTCATATCACACATACTCAAGTTTGGCTAAAGTAA
GAAGTGTGTCATGAATTATACGAACTATGCTTACTTTACC
Found at i:984927 original size:22 final size:23
Alignment explanation
Indices: 984901--984945 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
984891 TTATGTATTT
*
984901 TATATTATATTAAAAT-TAAATA
1 TATATAATATTAAAATGTAAATA
*
984923 TATATAATATTATAATGTAAATA
1 TATATAATATTAAAATGTAAATA
984946 AAACTCTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
TATATAATATTAAAATGTAAATA
Found at i:990966 original size:37 final size:37
Alignment explanation
Indices: 990910--990980 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
990900 GCTTAACTAT
*
990910 TTTAATATAGTTTACATTATGAAATTATTTTTTTATA
1 TTTAATATAGTTTAAATTATGAAATTATTTTTTTATA
*
990947 TTTAATATATTTTAAATTATGAAATTATTTTTTT
1 TTTAATATAGTTTAAATTATGAAATTATTTTTTT
990981 TACTCAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (37 bp):
TTTAATATAGTTTAAATTATGAAATTATTTTTTTATA
Found at i:990978 original size:19 final size:19
Alignment explanation
Indices: 990920--990978 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 19
990910 TTTAATATAG
*
990920 TTTACATTATGAAATTATT
1 TTTAAATTATGAAATTATT
** **
990939 TTTTTA-TATTTAA-TATAT
1 TTTAAATTATGAAATTAT-T
990957 TTTAAATTATGAAATTATT
1 TTTAAATTATGAAATTATT
990976 TTT
1 TTT
990979 TTTACTCAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 3 0.10
18 10 0.34
19 13 0.45
20 3 0.10
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTAAATTATGAAATTATT
Found at i:991049 original size:41 final size:41
Alignment explanation
Indices: 991000--991084 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
990990 TAATTACCAA
*
991000 TAAACTTAATCGAATTCTAATGTCAACTTAAATACAAAAAT
1 TAAACTTAATCGAATTCTAATGTCAACTTAAATAAAAAAAT
991041 TAAACTTAATCGAATTCTAATGTCAACTTAAATAAAAAAAT
1 TAAACTTAATCGAATTCTAATGTCAACTTAAATAAAAAAAT
991082 TAA
1 TAA
991085 TTAAGCTCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.32
Consensus pattern (41 bp):
TAAACTTAATCGAATTCTAATGTCAACTTAAATAAAAAAAT
Found at i:991085 original size:35 final size:38
Alignment explanation
Indices: 990984--991078 Score: 136
Period size: 41 Copynumber: 2.4 Consensus size: 38
990974 TTTTTTTTAC
* **
990984 TCAACTTAATTACCAATAAACTTAATCGAATTCTAATG
1 TCAACTTAAATAAAAATAAACTTAATCGAATTCTAATG
991022 TCAACTTAAATACAAAAATTAAACTTAATCGAATTCTAATG
1 TCAACTTAAAT--AAAAA-TAAACTTAATCGAATTCTAATG
991063 TCAACTTAAATAAAAA
1 TCAACTTAAATAAAAA
991079 AATTAATTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
38 10 0.20
39 5 0.10
40 3 0.06
41 33 0.65
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (38 bp):
TCAACTTAAATAAAAATAAACTTAATCGAATTCTAATG
Found at i:1001615 original size:18 final size:18
Alignment explanation
Indices: 1001594--1001631 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
1001584 TTTAAAAAAA
1001594 TATAAA-TTTTGAAATTTT
1 TATAAAGTTTTG-AATTTT
1001612 TATAAATGTTTTGAATTTT
1 TATAAA-GTTTTGAATTTT
1001631 T
1 T
1001632 TTGTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (18 bp):
TATAAAGTTTTGAATTTT
Found at i:1002398 original size:11 final size:11
Alignment explanation
Indices: 1002369--1002405 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
1002359 TCATGTTAAC
*
1002369 AAATAATT-TT
1 AAATAATTATA
1002379 AAA-AATTATA
1 AAATAATTATA
1002389 AAATAATTATA
1 AAATAATTATA
1002400 AAATAA
1 AAATAA
1002406 AAAATTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
9 4 0.17
10 7 0.29
11 13 0.54
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
AAATAATTATA
Found at i:1009563 original size:59 final size:59
Alignment explanation
Indices: 1009466--1009589 Score: 176
Period size: 59 Copynumber: 2.1 Consensus size: 59
1009456 ACCAAAAAAA
* *
1009466 TATAAATTTACTAATAGTTTAGCGACTTTGAATGTAGTTTACCCATAATTAAAACAATC
1 TATAAAATTACTAATAGTTTAGCGACTTTGAATCTAGTTTACCCATAATTAAAACAATC
* * * * * *
1009525 TATAAAATTACTACTAGTTTAGTGATTTTGAATCTAGTTTACCGATAATTAGAACGATC
1 TATAAAATTACTAATAGTTTAGCGACTTTGAATCTAGTTTACCCATAATTAAAACAATC
1009584 TATAAA
1 TATAAA
1009590 TTTTAGATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (59 bp):
TATAAAATTACTAATAGTTTAGCGACTTTGAATCTAGTTTACCCATAATTAAAACAATC
Found at i:1014805 original size:50 final size:50
Alignment explanation
Indices: 1014657--1014939 Score: 388
Period size: 50 Copynumber: 5.5 Consensus size: 50
1014647 CCATGGAAAC
1014657 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
1014707 AAGTGATAAGTAATAGCTTCGGTTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAG---C---TTCGGCTACACTTATCTGATCAAGGACAAATGA
1014763 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * **
1014813 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGCGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
1014863 AAGTGATAAGTGATAGCTTCGGCTACATTTATCTGATCAATGG-CAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GGACAAATGA
* * * *
1014913 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
1014940 CTGATCAGTG
Statistics
Matches: 208, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
50 134 0.64
51 24 0.12
53 2 0.01
56 48 0.23
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:1015063 original size:31 final size:31
Alignment explanation
Indices: 1014917--1015063 Score: 204
Period size: 31 Copynumber: 4.7 Consensus size: 31
1014907 AAATGACAAC
*
1014917 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
*
1014948 TGAAAAGTGGTAGCTTCGGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
1014979 TGAAAAGTGGTAGCTCCGGCTACCTGATCTG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* ** *
1015010 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
* *
1015041 TGAATAGTGGTAGCTTTGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
1015064 AAATGACAAG
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
Found at i:1016234 original size:29 final size:30
Alignment explanation
Indices: 1016202--1016263 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
1016192 ACTTAACAAG
*
1016202 CAAATGCTTTTAAAATAATAA-AAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTAA
1016231 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAGAAAATTAA
1016261 CAA
1 CAA
1016264 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.58, C:0.10, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAGAAAATTAA
Found at i:1019620 original size:15 final size:13
Alignment explanation
Indices: 1019593--1019626 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
1019583 CAATTTTTCA
1019593 TATATTAATATAT
1 TATATTAATATAT
1019606 TATATTATATCATAT
1 TATATTA-AT-ATAT
1019621 TATATT
1 TATATT
1019627 TGTATATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 2 0.11
15 10 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATTAATATAT
Done.