Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 200 of 362
Found at i:67367652 original size:27 final size:27
Alignment explanation
Indices: 67367622--67367907 Score: 365
Period size: 27 Copynumber: 10.6 Consensus size: 27
67367612 TTAGTTTACC
*
67367622 AAATTAACAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * * *
67367649 AAATTACTAGAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
67367676 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
67367703 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
67367730 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
67367757 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
67367784 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
67367811 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
67367838 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
67367865 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
67367892 AAATTATTAAAATACC
1 AAATTACCAAAATACC
67367908 TTCGACCTGT
Statistics
Matches: 218, Mismatches: 41, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 218 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:67367919 original size:81 final size:80
Alignment explanation
Indices: 67367622--67367969 Score: 317
Period size: 81 Copynumber: 4.3 Consensus size: 80
67367612 TTAGTTTACC
* * * * * * * * *
67367622 AAATTAACAAAATACCCCTGGTTTGTAAAATTACTAGAATATCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATA-CCTCGGTTTGTAAAATTATCAAA
*
67367687 ATACCCCTGGTTTGTA
65 ATACCCCTAGTTTGTA
* ** *
67367703 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCTC-GGTTTGTAAAATTATC-AA
* * *
67367767 AATACCCTTTGTTTATA
64 AATACCCCTAGTTTGTA
* * *
67367784 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CATGGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCTC--GGTTTGTAAAATTATCAA
67367848 AATACCCCTAGTTTGTA
64 AATACCCCTAGTTTGTA
* ** *** **
67367865 AAATTACCAAAATATCCC-TGATTTGTGAAATTATTAAAATACCTTCGACCTGTAAAATTATTGA
1 AAATTACCAAAATA-CCCTTGATTTGTAAAATTACCAAAATACC-TCGGTTTGTAAAATTATCAA
* *
67367929 AATA-CCCTCGACTTGTA
64 AATACCCCTAG-TTTGTA
*
67367946 AAATTACCAAAGTACCCTTGATTT
1 AAATTACCAAAATACCCTTGATTT
67367970 ACAGAATTAC
Statistics
Matches: 225, Mismatches: 33, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
80 12 0.05
81 208 0.92
82 4 0.02
83 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCTCGGTTTGTAAAATTATCAAAA
TACCCCTAGTTTGTA
Found at i:67367961 original size:27 final size:27
Alignment explanation
Indices: 67367622--67368017 Score: 268
Period size: 27 Copynumber: 14.7 Consensus size: 27
67367612 TTAGTTTACC
* *
67367622 AAATTAACAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * * *
67367649 AAATTACTAGAATATCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
67367676 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
67367703 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
67367730 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
67367757 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
67367784 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
67367811 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACCAAAATACCC-TCGATTTGTA
* *
67367838 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
67367865 AAATTACCAAAATATCCCT-GATTTGTG
1 AAATTACCAAAATA-CCCTCGATTTGTA
** * **
67367892 AAATTATTAAAATACCTTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
67367919 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
67367946 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** * **
67367973 GAATTACCATTTTATCCTCGATTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
67368000 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
67368018 TGTAGGGTAG
Statistics
Matches: 292, Mismatches: 62, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.01
27 283 0.97
28 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:67368039 original size:27 final size:27
Alignment explanation
Indices: 67368009--67368302 Score: 410
Period size: 27 Copynumber: 10.9 Consensus size: 27
67367999 AAAATTACCA
* * *
67368009 AAATACCCTTGTAGGGTAGAAATACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67368036 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67368063 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67368090 CAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
67368117 GAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
67368144 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
67368171 AAATACCTCTGTAGGGTAGAATTATTG
1 AAATACCCCTGTAGGGTAGAATTACTG
** *
67368198 CGATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
67368225 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
67368252 AAATACCCCTGTAGGGTGGAATTACAG
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
67368279 AGATA-CCTTGTAGGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTAC
67368303 CATTTTGCCC
Statistics
Matches: 239, Mismatches: 28, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
26 16 0.07
27 223 0.93
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:67368983 original size:27 final size:27
Alignment explanation
Indices: 67368953--67369054 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
67368943 ATTCTGTTAA
* * *
67368953 GTGGCTTTGCTACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
67368980 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
67369007 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
67369034 GTGACTCTATCACAATATCTG
1 GTGGCTATGCCACAATATCTG
67369055 ATAACTAAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.78
28 7 0.11
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:67369229 original size:6 final size:6
Alignment explanation
Indices: 67369191--67369334 Score: 116
Period size: 6 Copynumber: 23.3 Consensus size: 6
67369181 TTGCATTCAC
* * * *
67369191 ATTCTG ATTTTAG ATTCTG -TTACTTG ATACTG ATTCTG ATTTTA ATTCTG
1 ATTCTG ATTCT-G ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
67369241 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
67369291 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
67369335 AATGTTTCTT
Statistics
Matches: 112, Mismatches: 14, Indels: 24
0.75 0.09 0.16
Matches are distributed among these distances:
5 6 0.05
6 89 0.79
7 14 0.12
8 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:67369242 original size:31 final size:31
Alignment explanation
Indices: 67369191--67369271 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
67369181 TTGCATTCAC
*
67369191 ATTCTGATTTTAGATTCTGTTACTTGATACTG
1 ATTCTGATTTTA-ATTCTGTTACCTGATACTG
67369223 ATTCTGATTTTAATTCTGTTACCTGATACTG
1 ATTCTGATTTTAATTCTGTTACCTGATACTG
* *
67369254 ATTCTGATTCTGATTCTG
1 ATTCTGATTTTAATTCTG
67369272 ATTCTGTCAC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
31 34 0.74
32 12 0.26
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTAATTCTGTTACCTGATACTG
Found at i:67369276 original size:37 final size:37
Alignment explanation
Indices: 67369215--67369314 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
67369205 TTCTGTTACT
* * * * *
67369215 TGATACTGATTCTGATTTTAATTCTGTTACCTGATAC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
*
67369252 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATTC
1 TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
*
67369289 TAATTCTGATTCTGATTCTGATTCTG
1 TGATTCTGATTCTGATTCTGATTCTG
67369315 ATTCTGATTC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGATTCTGTCACCTAATAC
Found at i:67370919 original size:203 final size:204
Alignment explanation
Indices: 67370548--67370947 Score: 549
Period size: 203 Copynumber: 2.0 Consensus size: 204
67370538 ATTCATTTCA
* * *
67370548 ATTTATGGAGTCCATCTTCTGACATCTCAAAATGCGGTAATAAATATTTCCTAACTTTTATTAAT
1 ATTTATGGAGTCCATCTTCTGACATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAAT
* *
67370613 GATCACTCCAGAAAAATGTTTGGGTTTTTTTTTAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
66 GATCACTCCAGAAAAATGTTAGGGTTTTTTTTGAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
** * * ** * * *
67370678 ACAGTGGAATATATCATTAGAAGAACAAATTAAAAAGTCCGTGAAGCGGTTGAGGATTGATAATG
131 ACAGTAAAAGACATCATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGATAATG
67370743 GTAATTCCG
196 GTAATTCCG
* *
67370752 ATTTATGG-GTCTATCTTCT-AGCATCTTAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAA
1 ATTTATGGAGTCCATCTTCTGA-CATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAA
*
67370815 TGATCACTCCAG-AAAA-GTTAGGGTTTATTCTTTGAAACAGAAAAGTGAAGTCTTTGGAATCTT
65 TGATCACTCCAGAAAAATGTTAGGGTTT-TT-TTTGAAACAGAAAAGTGAAGTCTTCGGAATCTT
* * *
67370878 CAAACAGTAAAAGACA-CTATTAGAAGAACAAACCGAAAAGTCCATGAGGTGGTTGAGAATGGAT
128 CAAACAGTAAAAGACATC-ATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGAT
67370942 AATGGT
192 AATGGT
67370948 CTTGAGTTCT
Statistics
Matches: 172, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
201 9 0.05
202 8 0.05
203 147 0.85
204 8 0.05
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (204 bp):
ATTTATGGAGTCCATCTTCTGACATCTCAAAAGGAGGTAATAAATATTTCCTAACTTTTACTAAT
GATCACTCCAGAAAAATGTTAGGGTTTTTTTTGAAACAGAAAAGTGAAGTCTTCGGAATCTTCAA
ACAGTAAAAGACATCATTAGAAGAACAAACCAAAAAGTCCATGAAGCGGTTGAGAATGGATAATG
GTAATTCCG
Found at i:67371094 original size:42 final size:42
Alignment explanation
Indices: 67371035--67371118 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
67371025 TAGAATGGAG
67371035 CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTCGAT
1 CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTCGAT
67371077 CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTCGAT
1 CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTCGAT
67371119 GCATACTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (42 bp):
CTGTAGAAAGAATAAATAGAACCTTGCTGGAAAAGGCTCGAT
Found at i:67379371 original size:21 final size:21
Alignment explanation
Indices: 67379345--67379384 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67379335 GCATTTTCTG
67379345 TGGTGG-ATATGGAGGTGAATT
1 TGGTGGCAT-TGGAGGTGAATT
*
67379366 TGGTGGCATTGGTGGTGAA
1 TGGTGGCATTGGAGGTGAA
67379385 GATGAAGCGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.20, C:0.03, G:0.45, T:0.33
Consensus pattern (21 bp):
TGGTGGCATTGGAGGTGAATT
Found at i:67389288 original size:93 final size:93
Alignment explanation
Indices: 67389181--67389351 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
67389171 GCCCATAAGT
* *
67389181 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67389246 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
67389274 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67389339 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67389352 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:67389348 original size:46 final size:46
Alignment explanation
Indices: 67389173--67389348 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67389163 TGTAACCCGC
* * *
67389173 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67389219 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
67389269 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
67389312 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67389349 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67389807 original size:30 final size:30
Alignment explanation
Indices: 67389773--67389832 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67389763 ATTTAATACG
67389773 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
67389803 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
67389833 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:67396896 original size:93 final size:91
Alignment explanation
Indices: 67396732--67396900 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 91
67396722 CGCCCTAAGT
*
67396732 GAACTCGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
67396797 AGTTCGGATGCCTAGTTACATTTCAC
66 AGTTCGGATGCCTAGTTACATTTCAC
*
67396823 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
67396888 CGAGTTCGGATGC
64 CGAGTTCGGATGC
67396901 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 6 0.08
92 20 0.27
93 48 0.65
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCAC
Found at i:67396916 original size:46 final size:46
Alignment explanation
Indices: 67396726--67396909 Score: 150
Period size: 46 Copynumber: 4.0 Consensus size: 46
67396716 GTAACCCGCC
* * * * *
67396726 CTAAGTGAACTC-GACTCAACTCAACGAGCTCGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
67396771 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * * *
67396818 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCAT
67396864 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
67396909 C
1 C
67396910 CTAGTGACAT
Statistics
Matches: 112, Mismatches: 13, Indels: 27
0.74 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 22 0.20
45 22 0.20
46 30 0.27
47 30 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:67402763 original size:29 final size:30
Alignment explanation
Indices: 67402707--67402763 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
67402697 GTTTGATTGC
* *
67402707 TTTTGGTTGAGTCTTGTTAGTGTCATTAGT
1 TTTTGGTTGAATCTTGTTAGTGTAATTAGT
*
67402737 TTTTGGTTGAAT-TTGTTAGTTTAATTA
1 TTTTGGTTGAATCTTGTTAGTGTAATTA
67402764 TATTCATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.18, C:0.04, G:0.23, T:0.56
Consensus pattern (30 bp):
TTTTGGTTGAATCTTGTTAGTGTAATTAGT
Found at i:67404033 original size:17 final size:16
Alignment explanation
Indices: 67403995--67404043 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
67403985 TGTTGAGAAC
67403995 TTTTATTTA-TTATTTT
1 TTTTATTTACTT-TTTT
*
67404011 TATTATTTACTTTTTT
1 TTTTATTTACTTTTTT
67404027 TCTTTATTTATCTTTTT
1 T-TTTATTTA-CTTTTT
67404044 AAATTACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 9 0.32
18 6 0.21
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTACTTTTTT
Found at i:67412059 original size:25 final size:26
Alignment explanation
Indices: 67412029--67412091 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
67412019 TTAGCTCTTA
67412029 TGAGCTTTCCGAT-ATAGGCTCTTCG
1 TGAGCTTTCCGATAATAGGCTCTTCG
* * *
67412054 TGAGCTTTCCGTTAATTGGCTCTTTG
1 TGAGCTTTCCGATAATAGGCTCTTCG
*
67412080 TGAGCTTCCCGA
1 TGAGCTTTCCGA
67412092 CAGTGCTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 12 0.38
26 20 0.62
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (26 bp):
TGAGCTTTCCGATAATAGGCTCTTCG
Found at i:67412175 original size:24 final size:24
Alignment explanation
Indices: 67412141--67412188 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
67412131 GTTTCTCGTT
*
67412141 ATATGGCTCTTTGTGAGCTTCCCG
1 ATATGGCTCTTTGTGAACTTCCCG
*
67412165 ATATGGTTCTTTGTGAACTTCCCG
1 ATATGGCTCTTTGTGAACTTCCCG
67412189 TTGTATAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.40
Consensus pattern (24 bp):
ATATGGCTCTTTGTGAACTTCCCG
Found at i:67418177 original size:23 final size:23
Alignment explanation
Indices: 67418151--67418196 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
67418141 ATTATGATAG
67418151 CATAGTTCGTCATTTTATAGGCT
1 CATAGTTCGTCATTTTATAGGCT
*
67418174 CATAGTTTGTCATTTTATAGGCT
1 CATAGTTCGTCATTTTATAGGCT
67418197 TCTAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (23 bp):
CATAGTTCGTCATTTTATAGGCT
Found at i:67423904 original size:30 final size:30
Alignment explanation
Indices: 67423844--67423905 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
67423834 ACACGGGCGG
* * *
67423844 GTGTGACACACGTCTAGGTGATACGGCCGT
1 GTGTGACACACGGCTAGGTGACACGACCGT
*
67423874 GTGTGACACACGGCTAGGTGACACTACCGT
1 GTGTGACACACGGCTAGGTGACACGACCGT
67423904 GT
1 GT
67423906 ATCCCCTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (30 bp):
GTGTGACACACGGCTAGGTGACACGACCGT
Found at i:67433547 original size:43 final size:42
Alignment explanation
Indices: 67433484--67433603 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 42
67433474 TACTGTACCA
* *
67433484 ATGCCATATCCCAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTTATATCG
* *
67433526 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTTATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTTATATCG
*
67433569 ATGCCATATCCAAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
67433604 CAGTAACCCT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 31 0.46
43 37 0.54
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTTATATCG
Found at i:67439901 original size:46 final size:47
Alignment explanation
Indices: 67439655--67439973 Score: 190
Period size: 48 Copynumber: 6.7 Consensus size: 47
67439645 TCATCAAATT
* * ** *
67439655 GATGCCATGTCCCAG-CATGGTCTTACACTGACTATCGAAATCGAGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTC-ATCTCAAGGCC
* * * * *
67439703 GACGCCATGTCCCAGACATGGTTTTACACTAGCTCTCACATATC-CGTGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCTCAAG-GCC
* * * * * * *
67439753 GATGCCTTGTCCCAAACATGGTTTTACACTGACAC-C-TCTATACATGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-CA-AGGCC
* * * *
67439801 AATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATA-GCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCA-AGGCC
* * * *
67439847 GAT-ACATGTACTAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCAAGGCC
* * * *
67439893 GATG-CATGTCCCAGACATGTCTTACACCGGCTCTCGTCTTAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCC
67439939 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTC
67439974 CATTAGCTCT
Statistics
Matches: 213, Mismatches: 41, Indels: 34
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.05
45 14 0.07
46 56 0.26
47 19 0.09
48 60 0.28
49 17 0.08
50 36 0.17
51 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGGCC
Found at i:67443676 original size:50 final size:49
Alignment explanation
Indices: 67443504--67443864 Score: 224
Period size: 46 Copynumber: 7.6 Consensus size: 49
67443494 GGACTAGTAT
* * * * *
67443504 CGATGCCATGTCCTAGACATGGTCTTACACTG-GTGCATC--CATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACT--ATCAAAATCGAGGC
67443551 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGC
* *
67443600 CGATGCCATGTCCCAGACATGGTCTTACACT-AGC-ACTCACATATCCG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCA-AAAT-CGAGGC
* * * *
67443650 TGATGCCATGTCCCAGACATGGTCTTACATTGAC-A-C-ATATC-ATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGA-GGC
* * **
67443696 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-T-ACATTTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATCGAGGC
* * * * * *** * *
67443742 CGTTG-CATGTCCCAGACAT-GTTTTACATTGGCTTTC-GTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGC
* * * * *
67443788 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGC
*
67443836 CAATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
67443865 TGCACACAAA
Statistics
Matches: 257, Mismatches: 36, Indels: 43
0.76 0.11 0.13
Matches are distributed among these distances:
44 11 0.04
45 14 0.05
46 68 0.26
47 61 0.24
48 26 0.10
49 38 0.15
50 36 0.14
51 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGC
Found at i:67443698 original size:96 final size:94
Alignment explanation
Indices: 67443504--67443819 Score: 278
Period size: 96 Copynumber: 3.3 Consensus size: 94
67443494 GGACTAGTAT
* *
67443504 CGATGCCATGTCCTAGACATGGTCTTACACTGGTGCA-TC-C--ATCAAGT-CGATGCCATGTCC
1 CGATGCCATGTCCCAGACATGGTCTTACAC---TGCACTCACATATC-CGTGCGATGCCATGTCC
* * *
67443564 CAGACATGGTCTTACACTGACTATCAAAATCGAGGC
62 CAGACATGGTCTTACATTGACTA-C-ATATC-AAGC
67443600 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACATATCCGTGCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCACTCACATATCCGTGC-GATGCCATGTCCCA
67443665 GACATGGTCTTACATTGAC-ACATATCATAGC
64 GACATGGTCTTACATTGACTACATATCA-AGC
* * * * * *
67443696 CGATG-CATGTCCTAGACAT-GTCTTACACTG-GCTTACAT-TTCGAGGCCGTTG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCACTCACATATCCG-TG-CGATGCCATGTCCCA
* * * * *
67443756 GACAT-GTTTTACATTGGCTTTCGTCTCAATGC
64 GACATGGTCTTACATTGAC-TACATATCAA-GC
67443788 CGATGCCATGTCCCAGACATGGTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
67443820 GCTCTTATAA
Statistics
Matches: 188, Mismatches: 17, Indels: 32
0.79 0.07 0.14
Matches are distributed among these distances:
90 11 0.06
91 18 0.10
92 22 0.12
93 16 0.09
94 24 0.13
95 16 0.09
96 41 0.22
97 3 0.02
98 5 0.03
99 32 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCACTCACATATCCGTGCGATGCCATGTCCCAGA
CATGGTCTTACATTGACTACATATCAAGC
Found at i:67443843 original size:94 final size:93
Alignment explanation
Indices: 67443504--67443872 Score: 294
Period size: 94 Copynumber: 3.9 Consensus size: 93
67443494 GGACTAGTAT
* * ** *
67443504 CGATGCCATGTCCTAGACATGGTCTTACACTGG---TGCATCCATC-AAGTCGATGCCATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCCTTACAT--ATCGTGGCCGATG-CATGTCCC
* * *
67443565 AGACATGGTCTTACACTGACTATCAAAATCGA-GGC
63 AGACAT-GTCTTACATTGAC-A-C-ATATC-ATAGC
* * *
67443600 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCACATATCCGT-GCTGATGCCATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-CTTACATAT-CGTGGCCGATG-CATGTCCC
67443664 AGACATGGTCTTACATTGACACATATCATAGC
63 AGACAT-GTCTTACATTGACACATATCATAGC
* * * *
67443696 CGATG-CATGTCCTAGACAT-GTCTTACACTGG-CTTACATTTCGAGGCCGTTGCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCCTTACATATCGTGGCCGATGCATGTCCCAGA
* * * * *
67443758 CATGTTTTACATTGGCTTTCGTCTCA-ATGC
66 CATGTCTTACATTGAC--ACATATCATA-GC
* *
67443788 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATA-AT-GTGGCCAATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-CTTACATATCGTGGCCGATGCATGTCCCAG
67443851 ACATGTCTTACACTTGCACACA
65 ACATGTCTTACA-TTG-ACACA
67443873 AATAACCCAA
Statistics
Matches: 224, Mismatches: 32, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
90 11 0.05
91 17 0.08
92 24 0.11
93 13 0.06
94 52 0.23
95 18 0.08
96 48 0.21
97 1 0.00
98 3 0.01
99 34 0.15
100 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCCTTACATATCGTGGCCGATGCATGTCCCAGA
CATGTCTTACATTGACACATATCATAGC
Found at i:67450305 original size:30 final size:30
Alignment explanation
Indices: 67450271--67450331 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
67450261 TTCCCGAGCC
*
67450271 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * *
67450301 TAGGGGAAAAATTGTAAATTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
67450331 T
1 T
67450332 GAGTTAGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:67451157 original size:64 final size:64
Alignment explanation
Indices: 67450991--67451163 Score: 179
Period size: 68 Copynumber: 2.6 Consensus size: 64
67450981 TGGATGATAC
* * * *
67450991 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGAGCTAC-
67451056 AG
63 AG
* * * *
67451058 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCGCATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGAGCTA
67451122 C-G
62 CAG
*
67451124 GGATATATGTAGCTAGGTCGCATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCGCATGTGT-GTACTAAGTGCA
67451164 GGCTACTACA
Statistics
Matches: 88, Mismatches: 13, Indels: 13
0.77 0.11 0.11
Matches are distributed among these distances:
64 29 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 48 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGTGTGTACTAAGTGCACACCATGTGTACAAGAGAGCTACAG
Found at i:67451270 original size:49 final size:50
Alignment explanation
Indices: 67451137--67451270 Score: 198
Period size: 50 Copynumber: 2.7 Consensus size: 50
67451127 TATATGTAGC
* *
67451137 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATAGT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
* * * * *
67451187 TAGGTCACGTGTGTAGTACTAAGTGCAGGATACTACGTGTACCGGATAAT
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
67451237 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
67451271 TGCATACCAG
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 30 0.41
50 44 0.59
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (50 bp):
TAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAAT
Found at i:67457712 original size:24 final size:24
Alignment explanation
Indices: 67457676--67457817 Score: 178
Period size: 24 Copynumber: 6.0 Consensus size: 24
67457666 TACCAATATA
** *
67457676 TCAGCTCACTAGAGCTTCCTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
*
67457700 TCAGCTCGTTAGATCTTACTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
** *
67457724 TCAGCTTATTAGATCTTACTGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
* *
67457748 TCAACTCGTTAGAGCTTACCGTTC
1 TCAGCTCGTTAGAGCTTACTGTTC
*
67457772 TCAGCTCGTTAGAGCTAACTGTT-
1 TCAGCTCGTTAGAGCTTACTGTTC
*
67457795 TCAGCTCGATAGAGCTTACTGTT
1 TCAGCTCGTTAGAGCTTACTGTT
67457818 TAAAATCTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
23 21 0.21
24 81 0.79
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (24 bp):
TCAGCTCGTTAGAGCTTACTGTTC
Found at i:67458015 original size:20 final size:19
Alignment explanation
Indices: 67457988--67458094 Score: 97
Period size: 20 Copynumber: 5.4 Consensus size: 19
67457978 AGATATGTGT
*
67457988 TTATATGGATGAATTACTA
1 TTATATGGATGAATTACTG
67458007 TTGATATGGATGAATTACTG
1 TT-ATATGGATGAATTACTG
* *
67458027 TTATTATTGATGAACTACTG
1 TTA-TATGGATGAATTACTG
* *
67458047 TTTATATAGATGAAATACTGG
1 -TTATATGGATGAATTACT-G
* * *
67458068 TTATATGAATGAAGTACAG
1 TTATATGGATGAATTACTG
67458087 TTTATATG
1 -TTATATG
67458095 AATAGAAATG
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.05
20 66 0.89
21 4 0.05
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (19 bp):
TTATATGGATGAATTACTG
Found at i:67458095 original size:20 final size:20
Alignment explanation
Indices: 67457985--67458103 Score: 91
Period size: 20 Copynumber: 5.9 Consensus size: 20
67457975 ATAAGATATG
* *
67457985 TGTTTATATGGATGAATTAC
1 TGTTTATATGAATGAAATAC
* * * *
67458005 TATTGATATGGATGAATTAC
1 TGTTTATATGAATGAAATAC
*
67458025 TG-TTATTATTG-ATGAACTAC
1 TGTTTA-TA-TGAATGAAATAC
67458045 TGTTTATAT-AGATGAAATAC
1 TGTTTATATGA-ATGAAATAC
* *
67458065 TGGTTATATGAATGAAGTAC
1 TGTTTATATGAATGAAATAC
*
67458085 AGTTTATATGAATAGAAAT
1 TGTTTATATGAAT-GAAAT
67458104 GAATTGCAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
19 3 0.04
20 68 0.84
21 10 0.12
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.40
Consensus pattern (20 bp):
TGTTTATATGAATGAAATAC
Found at i:67461125 original size:47 final size:49
Alignment explanation
Indices: 67461049--67461181 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 49
67461039 TGTAACCCGC
67461049 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * *
67461099 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
67461142 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
67461182 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
43 6 0.09
44 2 0.03
45 2 0.03
46 28 0.40
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:67461197 original size:46 final size:45
Alignment explanation
Indices: 67461057--67461197 Score: 121
Period size: 46 Copynumber: 3.0 Consensus size: 45
67461047 GCCCATAAGC
*
67461057 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * *
67461104 GAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAGT
67461150 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
67461196 GA
1 GA
67461198 CATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 32 0.42
47 30 0.39
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:67463587 original size:15 final size:15
Alignment explanation
Indices: 67463563--67463610 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
67463553 AGGAAACCGA
67463563 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
67463578 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
67463592 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
67463608 ATA
1 ATA
67463611 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67467608 original size:15 final size:15
Alignment explanation
Indices: 67467584--67467646 Score: 92
Period size: 15 Copynumber: 4.2 Consensus size: 15
67467574 CAAGAACCGA
67467584 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
67467599 ATAGAGAAATCCAA-
1 ATAAAGAAATCCAAG
67467613 ATAAAGAAATCCAGAG
1 ATAAAGAAATCCA-AG
*
67467629 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
67467644 ATA
1 ATA
67467647 CGATACTATG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
14 12 0.28
15 19 0.44
16 12 0.28
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:67467615 original size:29 final size:30
Alignment explanation
Indices: 67467583--67467642 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
67467573 ACAAGAACCG
* *
67467583 AATAAAGAAATCCA-AGATAGAGAAATCCA
1 AATAAAGAAATCCAGAGATAAAGAAACCCA
67467612 AATAAAGAAATCCAGAGATAAAGAAACCCA
1 AATAAAGAAATCCAGAGATAAAGAAACCCA
67467642 A
1 A
67467643 GATACGATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.60, C:0.15, G:0.13, T:0.12
Consensus pattern (30 bp):
AATAAAGAAATCCAGAGATAAAGAAACCCA
Found at i:67469305 original size:1 final size:1
Alignment explanation
Indices: 67469299--67469385 Score: 156
Period size: 1 Copynumber: 87.0 Consensus size: 1
67469289 CAACGAATCA
67469299 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
67469364 TTTGTTTTTTTTTTTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTT
67469386 ATTATAATCT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 82 1.00
ACGTcount: A:0.01, C:0.00, G:0.01, T:0.98
Consensus pattern (1 bp):
T
Found at i:67474972 original size:40 final size:39
Alignment explanation
Indices: 67474920--67475103 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
67474910 TAACTCATTC
*
67474920 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
67474960 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
67475000 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
67475040 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
67475081 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67475104 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:67474982 original size:79 final size:80
Alignment explanation
Indices: 67474883--67475103 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
67474873 CTCGTTCAAG
* * ** * *
67474883 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
67474946 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
67474962 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
67475027 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
67475042 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
67475104 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:67475063 original size:80 final size:80
Alignment explanation
Indices: 67474923--67475103 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
67474913 CTCATTCAAT
* * *
67474923 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
67474987 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
67475002 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
67475065 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
67475083 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
67475104 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:67482332 original size:47 final size:48
Alignment explanation
Indices: 67482266--67482678 Score: 272
Period size: 47 Copynumber: 8.8 Consensus size: 48
67482256 TTATTTGTGT
67482266 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
* * * * **
67482312 GCCAATGTAAGATCATGTCTGGGACATGGCATC-GGCATTAAGATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCA-CATTATGAGA
* * * *
67482360 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATTAGCCTCGA-GATGTA-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATG-AGA
* * * *
67482406 GCCAGTGTAAGA-CATGCCTGGGACAT-GCATCGGCTACA--A-GATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGA-GA
** * * * *
67482450 GTTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CACAT-TATGAGA
* * * * * ** *
67482500 GCTAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCTCGATTCCGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGA
* *
67482549 GTCAGTGTAAGACCATGTCTGGGACATGGCATCA---AC-TTGATGGACAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-AT-GA-GA
*
67482596 GCCAGTGTAAGACCATGTTTGGGACATGGCATCA---AC-TTGATGGACGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-AT-GA-GA
* *
67482643 GCTAGTGTAAGATCATGTCTGGGACATGGCATCAGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
67482679 ATTATACCCT
Statistics
Matches: 296, Mismatches: 50, Indels: 39
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 13 0.04
45 13 0.04
46 62 0.21
47 113 0.38
48 22 0.07
49 34 0.11
50 35 0.12
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGA
Found at i:67483801 original size:20 final size:21
Alignment explanation
Indices: 67483763--67483801 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67483753 TTATAATGAA
*
67483763 CACACGGGCGTGTTACCCTTT
1 CACACGGGCATGTTACCCTTT
67483784 CACACGGGCATG-TACCCT
1 CACACGGGCATGTTACCCT
67483802 ATTTCCAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.36, G:0.23, T:0.23
Consensus pattern (21 bp):
CACACGGGCATGTTACCCTTT
Found at i:67484569 original size:46 final size:48
Alignment explanation
Indices: 67484501--67484627 Score: 123
Period size: 46 Copynumber: 2.7 Consensus size: 48
67484491 AGCAGCAAAC
* * * * *
67484501 CTTATCTCCTTGAAGTTGCAATGCAGTAGGTTAAAAATA-AATA-AAT
1 CTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATAGAATACAAT
* **
67484547 CTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCTACGAAT
1 CTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATAGAATAC-AAT
* * * *
67484596 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 CTTATCTCCCTGAAATTACAATGCAGCAGATT
67484628 GAAGACAGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
46 33 0.49
47 2 0.03
49 32 0.48
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (48 bp):
CTTATCTCCCTGAAATTACAATGCAGCAGATTAAAAATAGAATACAAT
Found at i:67484659 original size:49 final size:49
Alignment explanation
Indices: 67484543--67484679 Score: 148
Period size: 49 Copynumber: 2.8 Consensus size: 49
67484533 AAAAATAAAT
* * * * *
67484543 AAATCTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCTAC
1 AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACAGGCTAC
* * * *
67484592 GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTAC
1 AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACAGGCTAC
** ** *
67484641 AAATATTATCTCTTTGAAGTTTTAGTGGAGCAAATTAAA
1 AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
67484680 GCCACAAACC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (49 bp):
AAATATTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAACAGGCTAC
Found at i:67484739 original size:46 final size:44
Alignment explanation
Indices: 67484593--67484754 Score: 144
Period size: 44 Copynumber: 3.5 Consensus size: 44
67484583 ATAGGCTACG
* * * *
67484593 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACA
1 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAAATTAAAGA-A----ACA
* * * **
67484642 AATATTATCTCTTTGAAGTTTTAGTGGAGCAAATTAAAGCCACA
1 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAAATTAAAGAAACA
* * *
67484686 AACCTTATCTCTCTGAAGTTGTAGTGGAGCAAGTTAAAATTAAACA
1 AATCTTATCTCTCTGAAGTTGTAGTGGAGCAAATT-AAA-GAAACA
*
67484732 AATCTTATCTTTCTGAAGTTGTA
1 AATCTTATCTCTCTGAAGTTGTA
67484755 ATAGAGCATA
Statistics
Matches: 92, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
44 33 0.36
45 3 0.03
46 24 0.26
49 32 0.35
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGTAGTGGAGCAAATTAAAGAAACA
Found at i:67493585 original size:38 final size:40
Alignment explanation
Indices: 67493490--67493690 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
67493480 TTGAATGATG
* *
67493490 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
67493530 TCCGGACTAAGAT--CGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
* *
67493568 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * *
67493607 TCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
67493646 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
67493686 TCCGG
1 TCCGG
67493691 TTAAATTCCG
Statistics
Matches: 137, Mismatches: 15, Indels: 18
0.81 0.09 0.11
Matches are distributed among these distances:
38 40 0.29
39 44 0.32
40 51 0.37
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:67493622 original size:39 final size:40
Alignment explanation
Indices: 67493490--67493671 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
67493480 TTGAATGATG
* * * *
67493490 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
67493530 TCCGGACTAAGAT--CGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67493568 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67493607 TCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67493647 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67493672 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 39 0.32
39 43 0.36
40 38 0.31
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67493685 original size:40 final size:39
Alignment explanation
Indices: 67493491--67493671 Score: 192
Period size: 38 Copynumber: 4.6 Consensus size: 39
67493481 TGAATGATGT
* * * *
67493491 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
67493531 CCGGACTAAGAT--CGAAGGCATTTGTGCGAGATACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67493569 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67493607 TCC-GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67493647 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
67493672 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 41 0.34
39 41 0.34
40 37 0.31
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67493689 original size:79 final size:77
Alignment explanation
Indices: 67493543--67493704 Score: 209
Period size: 79 Copynumber: 2.1 Consensus size: 77
67493533 GGACTAAGAT
* * **
67493543 CGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
67493608 CCGGTTAAGTCC
66 CCGGTTAAATCC
* *
67493620 CGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 CGAAGGCAATTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
* *
67493684 TATCCGGTTAAATTC
63 AATCCGGTTAAATCC
67493699 CGAAGG
1 CGAAGG
67493705 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 22 0.30
78 12 0.16
79 39 0.53
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (77 bp):
CGAAGGCAATTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATCC
Found at i:67495226 original size:47 final size:48
Alignment explanation
Indices: 67495158--67495378 Score: 208
Period size: 47 Copynumber: 4.7 Consensus size: 48
67495148 GTTATTGTGG
*
67495158 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGAATATGAGA
* * * * * *
67495204 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGAATATGAGA
* * * *
67495252 GCTAGTGTAGGA-CATGTCTGGGACAT-GCATCGGCTATG-AGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATGAATATGAGA
* * *
67495298 GTTGAG-GTAAGACCATGTGTGGGACATGGCATCGACATGAGATAT-A-A
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGCCATGA-ATATGAGA
*
67495345 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
67495379 GCACTTTACC
Statistics
Matches: 141, Mismatches: 24, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
46 29 0.21
47 83 0.59
48 26 0.18
49 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCATGAATATGAGA
Found at i:67495364 original size:94 final size:94
Alignment explanation
Indices: 67495158--67495380 Score: 247
Period size: 94 Copynumber: 2.4 Consensus size: 94
67495148 GTTATTGTGG
* *
67495158 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAGTGTAAGACCATGTC
* *
67495223 TGGGACATGGCATCGGCATCAAAACGAGT
66 TGGGACATGGCATCGACATCAAAACGAGA
* * * **
67495252 GCTAGTGTAGGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTTGAG-GTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-ATGATGAGAG-CCAGTGTAAGACCATG
* * * *
67495315 TGTGGGACATGGCATCGACATGAGATA-TA-A
64 TCTGGGACATGGCATCGACATCA-AAACGAGA
*
67495345 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
67495381 ACTTTACCCA
Statistics
Matches: 109, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
93 11 0.10
94 85 0.78
95 13 0.12
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGACATCAAAACGAGA
Found at i:67496517 original size:21 final size:21
Alignment explanation
Indices: 67496492--67496531 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67496482 TTGAAATGGC
* *
67496492 CACACGGGCGTGTGCCCCTTT
1 CACACAGGCGTGCGCCCCTTT
67496513 CACACAGGCGTGCGCCCCT
1 CACACAGGCGTGCGCCCCT
67496532 ATGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.42, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACAGGCGTGCGCCCCTTT
Found at i:67496893 original size:19 final size:19
Alignment explanation
Indices: 67496871--67496913 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
67496861 TTTTTTTTCC
*
67496871 TTTTTTTTTAAATTCTTTA
1 TTTTTTTTTAAATTATTTA
* **
67496890 TTTTATTTTATTTTATTTA
1 TTTTTTTTTAAATTATTTA
67496909 TTTTT
1 TTTTT
67496914 AGGGAATTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTAAATTATTTA
Found at i:67497602 original size:3 final size:3
Alignment explanation
Indices: 67497596--67497621 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
67497586 GTTTATTTAC
67497596 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
67497622 TTCTAAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:67497891 original size:20 final size:20
Alignment explanation
Indices: 67497866--67497903 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67497856 AGCTTGTTAT
67497866 TTATTTATTT-TTCTTATTGA
1 TTATTT-TTTGTTCTTATTGA
67497886 TTATTTTTTGTTCTTATT
1 TTATTTTTTGTTCTTATT
67497904 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.74
Consensus pattern (20 bp):
TTATTTTTTGTTCTTATTGA
Found at i:67498284 original size:15 final size:16
Alignment explanation
Indices: 67498264--67498298 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
67498254 TTGTCATCTA
67498264 TTTT-AAAAATAATTT
1 TTTTAAAAAATAATTT
67498279 TTTTAAAAAATAATTT
1 TTTTAAAAAATAATTT
67498295 TTTT
1 TTTT
67498299 CGTATTTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTTAAAAAATAATTT
Found at i:67509887 original size:17 final size:17
Alignment explanation
Indices: 67509865--67509899 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
67509855 AATATTTGGT
67509865 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
67509882 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
67509899 A
1 A
67509900 AGCTCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (17 bp):
AGTACAAAATTAGTCGA
Found at i:67513084 original size:45 final size:45
Alignment explanation
Indices: 67513007--67513092 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
67512997 GGAACTATGA
* *
67513007 CATCAGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGG
1 CATCAGAACTCATTGAGTTATGGCCTGAGTTCATGATGTATGTGG
* *
67513052 CATCTGAACTCATTGAGTTATGGCCTGGGTTCATGATGTAT
1 CATCAGAACTCATTGAGTTATGGCCTGAGTTCATGATGTAT
67513093 ATGACACATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (45 bp):
CATCAGAACTCATTGAGTTATGGCCTGAGTTCATGATGTATGTGG
Found at i:67521751 original size:42 final size:43
Alignment explanation
Indices: 67521691--67521799 Score: 105
Period size: 42 Copynumber: 2.5 Consensus size: 43
67521681 ATTGGCACCA
* * * *
67521691 ATATGAGATTTACGTGTAAGACCAT-TTCTGGGACATTAGTATCG
1 ATATTAGA-TTACATGTAAGACCATGTT-TGGGACAGTAGCATCG
* * * *
67521735 -TATTTGATTTCATGTAAGACCCTGTTTGGGACAGTGGCATCG
1 ATATTAGATTACATGTAAGACCATGTTTGGGACAGTAGCATCG
*
67521777 ATATTAGGTTACATGTAAGACCA
1 ATATTAGATTACATGTAAGACCA
67521800 CGTCTGAGAC
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
ATATTAGATTACATGTAAGACCATGTTTGGGACAGTAGCATCG
Found at i:67528697 original size:29 final size:29
Alignment explanation
Indices: 67528659--67528717 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
67528649 ATTTTTGATG
* * *
67528659 AATTTGATTATTATGGGA-TAAATTGTGAA
1 AATTAGATTA-TAAGGGACTAAAATGTGAA
67528688 AATTAGATTATAAGGGACTAAAATGTGAA
1 AATTAGATTATAAGGGACTAAAATGTGAA
67528717 A
1 A
67528718 TAAATGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (29 bp):
AATTAGATTATAAGGGACTAAAATGTGAA
Found at i:67529352 original size:43 final size:42
Alignment explanation
Indices: 67529230--67529356 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 42
67529220 TGAGACCACG
*
67529230 TCTGGGAC-GTTGGCATCA-ATTTGAGATTTACATGTAAGACCATG
1 TCTGGGACAG-TGGCATCATA-TT-AGA-TTACATGTAAGACCATA
* * * * *
67529274 TCTGGGACA-TCGACATCATATTTGATTTCGTGTAAGACCCTA
1 TCTGGGACAGT-GGCATCATATTAGATTACATGTAAGACCATA
67529316 TCTGGGACAGTGGCATCGATATTAGATTACATGTAAGACCA
1 TCTGGGACAGTGGCATC-ATATTAGATTACATGTAAGACCA
67529357 CGTTTGAGAC
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
42 27 0.40
43 23 0.34
44 16 0.24
45 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (42 bp):
TCTGGGACAGTGGCATCATATTAGATTACATGTAAGACCATA
Found at i:67529373 original size:43 final size:42
Alignment explanation
Indices: 67529222--67529374 Score: 141
Period size: 43 Copynumber: 3.6 Consensus size: 42
67529212 ATTTTGTGTG
67529222 AGACCACGTCTGGGACGTTGGCATCA-ATTTGAGATTTACATGTA
1 AGACCACGTCTGGGACGTTGGCATCATA-TT-AGA-TTACATGTA
* * * * * * *
67529266 AGACCATGTCTGGGACATCGACATCATATTTGATTTCGTGTA
1 AGACCACGTCTGGGACGTTGGCATCATATTAGATTACATGTA
*
67529308 AGACC-CTATCTGGGACAG-TGGCATCGATATTAGATTACATGTA
1 AGACCAC-GTCTGGGAC-GTTGGCATC-ATATTAGATTACATGTA
* *
67529351 AGACCACGTTTGAGACGTTGGCAT
1 AGACCACGTCTGGGACGTTGGCAT
67529375 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 26 0.31
43 33 0.39
44 25 0.29
45 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
AGACCACGTCTGGGACGTTGGCATCATATTAGATTACATGTA
Found at i:67532315 original size:21 final size:22
Alignment explanation
Indices: 67532274--67532319 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
67532264 ATGAATTTTA
* *
67532274 ATGCTTTATTATTATTATGAGT
1 ATGCTTGATTATTACTATGAGT
67532296 ATGCTTGATTATT-CTATGAGT
1 ATGCTTGATTATTACTATGAGT
67532317 ATG
1 ATG
67532320 TGATTGGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (22 bp):
ATGCTTGATTATTACTATGAGT
Found at i:67534158 original size:16 final size:17
Alignment explanation
Indices: 67534132--67534163 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67534122 TAATTTGCAT
67534132 ATTTATGAATGAAATTG
1 ATTTATGAATGAAATTG
67534149 ATTT-TGAATGAAATT
1 ATTTATGAATGAAATT
67534164 TTTATGGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.44
Consensus pattern (17 bp):
ATTTATGAATGAAATTG
Found at i:67534202 original size:46 final size:46
Alignment explanation
Indices: 67534135--67534230 Score: 183
Period size: 46 Copynumber: 2.1 Consensus size: 46
67534125 TTTGCATATT
*
67534135 TATGAATGAAATTGATTTTGAATGAAATTTTTATGGCCCGGTTTTG
1 TATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTTTG
67534181 TATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTTTG
1 TATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTTTG
67534227 TATG
1 TATG
67534231 TGTGCTTGTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (46 bp):
TATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTTTG
Found at i:67537861 original size:19 final size:19
Alignment explanation
Indices: 67537839--67537881 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
67537829 GTGTACGAAG
*
67537839 ATGCACTTCGTGTGCCAGT
1 ATGCACTTCGTGTGCCAAT
* *
67537858 ATGCACTTTGTGTGTCAAT
1 ATGCACTTCGTGTGCCAAT
67537877 ATGCA
1 ATGCA
67537882 TTATATGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAAT
Found at i:67540760 original size:42 final size:42
Alignment explanation
Indices: 67540701--67540782 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
67540691 AGTAAATGTG
*
67540701 AATGAGTCAATAAACTCCTAAAATGGGTTTGAATGGTAAGAT
1 AATGAGTCAATAAACTCCTAAAACGGGTTTGAATGGTAAGAT
*
67540743 AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAG
1 AATGAGTCAATAAACTCCTAAAACGGGTTTGAATGGTAAG
67540783 CTAAAAGGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (42 bp):
AATGAGTCAATAAACTCCTAAAACGGGTTTGAATGGTAAGAT
Found at i:67542247 original size:21 final size:21
Alignment explanation
Indices: 67542216--67542296 Score: 146
Period size: 21 Copynumber: 3.9 Consensus size: 21
67542206 TCTTTAAAAC
67542216 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
67542236 AGGGCAACACGCCTGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
67542257 AGGGCAACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
67542278 AGGGCAACACGCCCGTGTG
1 AGGGCAACACGCCCGTGTG
67542297 ACCATCTAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
20 5 0.09
21 53 0.91
ACGTcount: A:0.22, C:0.28, G:0.38, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:67543581 original size:46 final size:45
Alignment explanation
Indices: 67543422--67543639 Score: 199
Period size: 46 Copynumber: 4.7 Consensus size: 45
67543412 GGGGCAAGTT
* *
67543422 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATTATCGAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCT-T-ATTCTC-AA
* ** *
67543471 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACA-TCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTATTCTC-AA
67543517 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTAT-TCTCAA
** * ** **
67543562 GACTAATGCATGTCCCAGACA-AGTCTTACACTACCATTCGTCTCAA
1 G-CCGATGCATGTCCCAGACATGGTCTTACACTGGC-TTATTCTCAA
67543608 TGCCGATGCCATGTCCCAGACATGGTCTTACA
1 -GCCGATG-CATGTCCCAGACATGGTCTTACA
67543640 TAGGCTCCCA
Statistics
Matches: 142, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
44 13 0.09
45 16 0.11
46 53 0.37
47 17 0.12
48 8 0.06
49 35 0.25
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTATTCTCAA
Found at i:67543667 original size:94 final size:89
Alignment explanation
Indices: 67543421--67543688 Score: 242
Period size: 94 Copynumber: 2.9 Consensus size: 89
67543411 TGGGGCAAGT
* *
67543421 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATTATCGAGGCCGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCA-TAT-GTGGACGATG-CATGTCC
*
67543486 CAGACATGGTCTTACACTGACACATCTCGTA
61 CAGACA-AGTCTTACACT-ACACATCTCGTA
* * * * *
67543517 -GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTATGTCTCAAGACTAATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATGT--GGAC-GATGCATGTCCCA
67543579 GACAAGTCTTACACTAC-CAT-TCGTCTCAA
63 GACAAGTCTTACACTACACATCTCG--T--A
*
67543608 TGCCGATGCCATGTCCCAGACATGGTCTTACA-TAGGCTCCCATAATGTGGTCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-GGCT--CAT-ATGTGGACGATGCATGTCCC
*
67543672 AGACATGTCTTACACTA
62 AGACAAGTCTTACACTA
67543689 GCTTACAGCA
Statistics
Matches: 143, Mismatches: 15, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
87 3 0.02
88 3 0.02
89 3 0.02
90 12 0.08
91 18 0.13
92 10 0.07
93 28 0.20
94 53 0.37
95 9 0.06
96 2 0.01
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (89 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATGTGGACGATGCATGTCCCAGAC
AAGTCTTACACTACACATCTCGTA
Found at i:67553021 original size:21 final size:20
Alignment explanation
Indices: 67552983--67553021 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
67552973 TCTTTAAAAT
*
67552983 AGGGCAAACGCTCATGTGGG
1 AGGGCAAACGCCCATGTGGG
*
67553003 AGGGCAACACGCCCGTGTG
1 AGGGCAA-ACGCCCATGTG
67553022 ACCATCTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.23, C:0.26, G:0.38, T:0.13
Consensus pattern (20 bp):
AGGGCAAACGCCCATGTGGG
Found at i:67554336 original size:46 final size:44
Alignment explanation
Indices: 67554183--67554411 Score: 165
Period size: 46 Copynumber: 4.9 Consensus size: 44
67554173 GCTATCATTA
* * *
67554183 TCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATAT
1 TCGA-GCTGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TCG--T-C
* * * * * *
67554234 TCGTGCCGATGCAATGTTCTAGACATGGTC-TACACTGAC-ACATC
1 TCGAGCTGATGC-ATGTCCTAGACAT-GTCTTACACTGGCTTCGTC
* *
67554278 TCGTAGCTGATGCATGTCCTAAACATGTGTTACACTGGCTTACGTC
1 TCG-AGCTGATGCATGTCCTAGACATGTCTTACACTGGCTT-CGTC
* *
67554324 TCGAGACTGATGCATGTCCCAGACATGTCTTACACTAGCATTCGTC
1 TCGAG-CTGATGCATGTCCTAGACATGTCTTACACTGGC-TTCGTC
* *
67554370 TCAATGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 TCGA-GCTGATG-CATGTCCTAGACAT-GTCTTACACTGGCT
67554412 CTCATAATGT
Statistics
Matches: 143, Mismatches: 25, Indels: 24
0.74 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 22 0.15
45 10 0.07
46 47 0.33
47 18 0.13
48 12 0.08
49 8 0.06
50 21 0.15
51 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (44 bp):
TCGAGCTGATGCATGTCCTAGACATGTCTTACACTGGCTTCGTC
Found at i:67556242 original size:19 final size:20
Alignment explanation
Indices: 67556210--67556255 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
67556200 AAGAAAATGA
67556210 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
67556230 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
67556249 TTTCTGG
1 TTTCTGG
67556256 TGTTTGGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:67556373 original size:28 final size:28
Alignment explanation
Indices: 67556341--67556397 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
67556331 TTTACATATA
67556341 TTAATAAATTTATAT-TTTAAATTATTTT
1 TTAATAAATTTAT-TCTTTAAATTATTTT
*
67556369 TTAATAAATTTATTCTTTAAATTGTTTT
1 TTAATAAATTTATTCTTTAAATTATTTT
67556397 T
1 T
67556398 ACATATATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
TTAATAAATTTATTCTTTAAATTATTTT
Found at i:67556382 original size:16 final size:16
Alignment explanation
Indices: 67556341--67556388 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
67556331 TTTACATATA
67556341 TTAATAAATTTA-TAT
1 TTAATAAATTTATTAT
*
67556356 TT--TAAA-TTATTTT
1 TTAATAAATTTATTAT
*
67556369 TTAATAAATTTATTCT
1 TTAATAAATTTATTAT
67556385 TTAA
1 TTAA
67556389 ATTGTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
12 3 0.11
13 8 0.30
15 6 0.22
16 10 0.37
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATAAATTTATTAT
Found at i:67559537 original size:25 final size:26
Alignment explanation
Indices: 67559509--67559557 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
67559499 AACAAAAAAA
*
67559509 AATTTTAA-AATTCAAAATTTGATTG
1 AATTTGAAGAATTCAAAATTTGATTG
* *
67559534 AATTTGAAGAGTTCAATATTTGAT
1 AATTTGAAGAATTCAAAATTTGAT
67559558 CTATTCACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 7 0.35
26 13 0.65
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (26 bp):
AATTTGAAGAATTCAAAATTTGATTG
Found at i:67565183 original size:47 final size:47
Alignment explanation
Indices: 67565111--67566039 Score: 1273
Period size: 47 Copynumber: 19.6 Consensus size: 47
67565101 CCCTTCAGGA
* * * *
67565111 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATCCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
67565158 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
67565205 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * * *
67565252 CTTACCACACATACACGTGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* **
67565299 CTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565346 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565393 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565440 TTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
67565487 CTTATCTCATATATGCATGTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565534 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
67565581 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565628 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
67565675 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
67565722 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
67565771 TTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
67565818 CTTATCACATATATATACACT-TCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
67565867 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
67565914 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
67565961 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
67566010 CTTATCACATATATACACT-TTCACATTCAT
1 CTTATCACATATATACA-TGTTCACATTCAT
67566040 TCAAATATAC
Statistics
Matches: 824, Mismatches: 50, Indels: 16
0.93 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 687 0.83
49 135 0.16
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:67567548 original size:56 final size:56
Alignment explanation
Indices: 67567481--67567656 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
67567471 TATTAGTTTA
*
67567481 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
67567537 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
67567593 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
67567649 TTGCCCAT
1 TTGCCCAT
67567657 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:67576147 original size:39 final size:39
Alignment explanation
Indices: 67576093--67576270 Score: 329
Period size: 39 Copynumber: 4.6 Consensus size: 39
67576083 GCAGCACAAA
*
67576093 GACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGG
1 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
*
67576132 GACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGG
1 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
*
67576171 GACTTTGGCCCGGATACATTTCCAGCACGAAGCCTGCGG
1 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
67576210 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
1 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
67576249 GACTTTAGCCCGGATACATTTC
1 GACTTTAGCCCGGATACATTTC
67576271 AAGTGTCTTG
Statistics
Matches: 136, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 136 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGG
Found at i:67582042 original size:39 final size:39
Alignment explanation
Indices: 67581993--67582150 Score: 280
Period size: 39 Copynumber: 4.1 Consensus size: 39
67581983 TTATATTACT
* *
67581993 AGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
* *
67582032 AGCACGAAGCCTACGGGACTTTGGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
67582071 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
67582110 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
1 AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
67582149 AG
1 AG
67582151 TGTCTTGCAT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (39 bp):
AGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC
Found at i:67585536 original size:48 final size:48
Alignment explanation
Indices: 67585457--67585732 Score: 235
Period size: 48 Copynumber: 5.9 Consensus size: 48
67585447 CATATGGTAG
* * * *
67585457 GATGCCAATGCCATATCTC-GTATATGATCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGATCACATATC
* * ** *
67585505 -AGTGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTTAGATC
1 GA-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** *
67585553 GATGCCAATGCCATGTCCCAAACATGGTCTTATATGGGACCTTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
67585601 GATGCCAATGCCATGTCCCAAACATGGTCTTATATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * **** * *
67585649 GATGCCGAT---A-G-CCCAG-CTATGATCTTACACAAAATTAAATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
67585692 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
67585733 GTACATAACC
Statistics
Matches: 184, Mismatches: 34, Indels: 20
0.77 0.14 0.08
Matches are distributed among these distances:
42 1 0.01
43 28 0.15
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 147 0.80
49 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:67595690 original size:9 final size:8
Alignment explanation
Indices: 67595664--67595689 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
67595654 AATCAAAATT
67595664 AATAAAAA
1 AATAAAAA
67595672 AATAAAAA
1 AATAAAAA
67595680 AATAAAAA
1 AATAAAAA
67595688 AA
1 AA
67595690 AACTTTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AATAAAAA
Found at i:67601132 original size:24 final size:24
Alignment explanation
Indices: 67601105--67601175 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
67601095 ATCATAGAAA
67601105 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
* *
67601129 GTGTAGTATGGCGCTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
67601153 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
67601176 TGATTTGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
23 1 0.03
24 34 0.87
25 1 0.03
26 3 0.08
ACGTcount: A:0.18, C:0.14, G:0.35, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:67601196 original size:26 final size:24
Alignment explanation
Indices: 67601115--67601185 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
67601105 GTGTACATTG
* * * *
67601115 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
*
67601139 GCGCTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
67601163 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
67601186 GTCAACATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.20, C:0.13, G:0.34, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:67609086 original size:24 final size:24
Alignment explanation
Indices: 67609059--67609129 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
67609049 ATCATAGAAA
67609059 GTGTACAT-TGGCACTATGTGTGCG
1 GTGTA-ATATGGCACTATGTGTGCG
*
67609083 GTGTAGTATGGCACTATGTGTGCG
1 GTGTAATATGGCACTATGTGTGCG
*
67609107 GAGTTGAATA--GCACTATGTGTGC
1 GTG-T-AATATGGCACTATGTGTGC
67609130 TGATTTGAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.02
24 36 0.88
25 1 0.02
26 3 0.07
ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32
Consensus pattern (24 bp):
GTGTAATATGGCACTATGTGTGCG
Found at i:67609150 original size:26 final size:24
Alignment explanation
Indices: 67609069--67609139 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
67609059 GTGTACATTG
* * * *
67609069 GCACTATGTGTGCGGTGTAGTATG
1 GCACTATGTGTGCGGAGTTGAATA
67609093 GCACTATGTGTGCGGAGTTGAATA
1 GCACTATGTGTGCGGAGTTGAATA
* *
67609117 GCACTATGTGTGCTGATTTGAAT
1 GCACTATGTGTGCGGAGTTGAAT
67609140 GTCAACATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.32, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGGAGTTGAATA
Found at i:67616356 original size:51 final size:51
Alignment explanation
Indices: 67616280--67616382 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
67616270 CTGCTAATGG
67616280 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
1 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
67616331 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
1 TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
67616382 T
1 T
67616383 ACCAGCAACA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (51 bp):
TGTTCTCCTTTCTAAGTCTTATAATGAGGCTTATGATATCATGGAGAGAAT
Found at i:67623885 original size:15 final size:15
Alignment explanation
Indices: 67623865--67623897 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67623855 CTATAATGCT
67623865 GGTGAAATAATATCG
1 GGTGAAATAATATCG
67623880 GGTGAAATAATATCG
1 GGTGAAATAATATCG
67623895 GGT
1 GGT
67623898 CTCAAGCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.27
Consensus pattern (15 bp):
GGTGAAATAATATCG
Found at i:67623887 original size:58 final size:58
Alignment explanation
Indices: 67623823--67623939 Score: 180
Period size: 58 Copynumber: 2.0 Consensus size: 58
67623813 TATAATTCCC
* * * *
67623823 GTGAAATAATATCATGCCTCGAGCCTAGCAGGCTATAATGCTGGTGAAATAATATCGG
1 GTGAAATAATATCAGGCCTCAAGCCTAGCAGGCTATAATACCGGTGAAATAATATCGG
* *
67623881 GTGAAATAATATCGGGTCTCAAGCCTAGCAGGCTATAATACCGGTGAAATAATATCGG
1 GTGAAATAATATCAGGCCTCAAGCCTAGCAGGCTATAATACCGGTGAAATAATATCGG
67623939 G
1 G
67623940 CTTCGAGCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (58 bp):
GTGAAATAATATCAGGCCTCAAGCCTAGCAGGCTATAATACCGGTGAAATAATATCGG
Found at i:67623933 original size:43 final size:44
Alignment explanation
Indices: 67623871--67623956 Score: 122
Period size: 43 Copynumber: 2.0 Consensus size: 44
67623861 TGCTGGTGAA
*
67623871 ATAATATCGGGTGAAATAATATCGGG-TCTCAAGCCTAGCAGGCT
1 ATAATATCCGGTGAAATAATATCGGGCT-TCAAGCCTAGCAGGCT
* *
67623915 ATAATA-CCGGTGAAATAATATCGGGCTTCGAGCCTAGTAGGC
1 ATAATATCCGGTGAAATAATATCGGGCTTCAAGCCTAGCAGGC
67623957 GAAATGGCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 31 0.82
44 7 0.18
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (44 bp):
ATAATATCCGGTGAAATAATATCGGGCTTCAAGCCTAGCAGGCT
Found at i:67625241 original size:25 final size:24
Alignment explanation
Indices: 67625212--67625267 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
67625202 TTTCTCCTAA
67625212 ATTTTAATTTTATTTAATAATTTAAT
1 ATTTTAA-TTTATTTAATAA-TTAAT
*
67625238 -TTTTCAATTTATTTAATTATTAAT
1 ATTTT-AATTTATTTAATAATTAAT
67625262 ATTTTA
1 ATTTTA
67625268 TATTAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 6 0.22
25 19 0.70
26 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
ATTTTAATTTATTTAATAATTAAT
Found at i:67630807 original size:26 final size:26
Alignment explanation
Indices: 67630755--67630807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
67630745 AATGGTAGCT
* *
67630755 AAATGTTAAATTTATATGTTGTTATG
1 AAATGTTAAATTTATATGTGGTCATG
67630781 AAATGTTAGAATTTATAT-TGGTCATG
1 AAATGTTA-AATTTATATGTGGTCATG
67630807 A
1 A
67630808 CTAAATATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.36, C:0.02, G:0.17, T:0.45
Consensus pattern (26 bp):
AAATGTTAAATTTATATGTGGTCATG
Found at i:67638232 original size:55 final size:54
Alignment explanation
Indices: 67638143--67638398 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
67638133 CATTAGGGTT
**
67638143 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGCAATTGGTAAGGTTTCTAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAA-GTTTCTAAGG
* * * *
67638198 CAAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGG
* * * *
67638253 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTC-TAAGG
*
67638306 CAAGGATACCATGTAAGACCATGTCAAGACATGGTAA-TGGTAAGTTTC-AA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
* * * *
67638356 -AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
67638399 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
48 2 0.01
49 37 0.22
52 7 0.04
53 40 0.24
54 12 0.07
55 67 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGG
Found at i:67638350 original size:108 final size:110
Alignment explanation
Indices: 67638151--67638351 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
67638141 TTCAAGGATA
* * *
67638151 CCATGTAAGACCATGCTAAGGTATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
67638216 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
67638261 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
67638323 ACCATGTCAAGACATGGTAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
67638352 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:67638616 original size:16 final size:16
Alignment explanation
Indices: 67638595--67638625 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67638585 ATAAATTTGA
67638595 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67638611 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67638626 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67641418 original size:26 final size:26
Alignment explanation
Indices: 67641368--67641420 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
67641358 AATGGTAGTC
*
67641368 AAATGTTAAATATATATGTTGTTATG
1 AAATGTTAAATATATATATTGTTATG
67641394 AAATGTTAGAAT-T-TATATTGCTTATG
1 AAATGTTA-AATATATATATTG-TTATG
67641420 A
1 A
67641421 CTAAATATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (26 bp):
AAATGTTAAATATATATATTGTTATG
Found at i:67644422 original size:48 final size:48
Alignment explanation
Indices: 67644366--67644462 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
67644356 TGGTTGGATT
*** * *
67644366 CCAATGCCATATCTTGGATATGGTCTTACATAGGATTACATATCAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
* * *
67644414 CCAATGCCATGTCCCAGACATGGTCTTACCTGGGATCACATATCAATG
1 CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
67644462 C
1 C
67644463 TGATAACCCA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (48 bp):
CCAATGCCATATCCCAGACATGGTCTTACATAGGATCACATATCAATG
Found at i:67653996 original size:23 final size:23
Alignment explanation
Indices: 67653969--67654012 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
67653959 TAAACTTATT
*
67653969 CACTTTAATTTTAAATTAATATA
1 CACTTTAATATTAAATTAATATA
67653992 CACTTTAATATTAAATTAATA
1 CACTTTAATATTAAATTAATA
67654013 AAATATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (23 bp):
CACTTTAATATTAAATTAATATA
Found at i:67656165 original size:47 final size:46
Alignment explanation
Indices: 67656111--67656232 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 46
67656101 TGTGTGTGCT
* *
67656111 AGTGTAAGACATGTCTGGGACATGTATCGGCCACATTATGA-A-ATGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG--ACATTAAGACAGA-GCC
*
67656158 AGTGTAAGACATGTCTGGGACATGCAT-AGACATTAAGACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGACATTAAGAC-AGAGCC
*
67656204 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
67656233 ACTACGAGAT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
44 8 0.12
46 31 0.47
47 27 0.41
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGACATTAAGACAGAGCC
Found at i:67656312 original size:50 final size:47
Alignment explanation
Indices: 67656245--67656374 Score: 127
Period size: 48 Copynumber: 2.7 Consensus size: 47
67656235 TACGAGATGT
* * *
67656245 GTCAGTATAAGACCATGTCTAGGACATGGCATCGGCACGGATATGTGAGA
1 GTCAGTGTAAGACCATGTCT-GGACATGGCATCGCCAC-AAT-TGTGAGA
* * * * *
67656295 G-CTAGTGTAAGACCATGTTTGGGACATGGCGTCGCCTCAATTTTGATA
1 GTC-AGTGTAAGACCATGTCT-GGACATGGCATCGCCACAATTGTGAGA
67656343 GTCAGTGTAAGACCATGTCTGTGACATGGCAT
1 GTCAGTGTAAGACCATGTCTG-GACATGGCAT
67656375 TGACTTGATG
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.02
48 31 0.47
49 4 0.06
50 30 0.45
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (47 bp):
GTCAGTGTAAGACCATGTCTGGACATGGCATCGCCACAATTGTGAGA
Found at i:67663028 original size:47 final size:47
Alignment explanation
Indices: 67662868--67663039 Score: 170
Period size: 49 Copynumber: 3.6 Consensus size: 47
67662858 TGTGTTAGTA
* * *
67662868 TAAGACCATGTCTAGGACATGACATCGGAAC-GGATATGTGA-GAGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATC-G-ACTCG--ATG-GATGAGCCAGTG
* * * * *
67662918 TAAGACCATGTCTGGGAGATGGCATCGACCTCGATTTTGAT-AGTCAATG
1 TAAGACCATGTCTAGGACATGGCATCGA-CTCGA--TGGATGAGCCAGTG
*
67662967 TAAGACCATGTCTAGGACATGGCATCGACTTGATGGATGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGACTCGATGGATGAGCCAGTG
67663014 TAAGACCATGTCTAGGACATGGCATC
1 TAAGACCATGTCTAGGACATGGCATC
67663040 AGCATTATAC
Statistics
Matches: 102, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
46 4 0.04
47 32 0.31
48 6 0.06
49 35 0.34
50 25 0.25
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
TAAGACCATGTCTAGGACATGGCATCGACTCGATGGATGAGCCAGTG
Found at i:67665906 original size:46 final size:46
Alignment explanation
Indices: 67665856--67666031 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
67665846 TGATTGAGCA
67665856 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67665902 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67665947 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67665995 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67666032 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67666012 original size:93 final size:93
Alignment explanation
Indices: 67665853--67666024 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
67665843 GGATGATTGA
*
67665853 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
67665918 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67665946 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
67666010 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
67666025 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67673478 original size:46 final size:46
Alignment explanation
Indices: 67673428--67673603 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
67673418 TGATTGAGCA
67673428 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67673474 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67673519 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
67673567 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67673604 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67673584 original size:93 final size:93
Alignment explanation
Indices: 67673425--67673596 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
67673415 GGATGATTGA
*
67673425 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
67673490 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67673518 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
67673582 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
67673597 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67680378 original size:27 final size:27
Alignment explanation
Indices: 67680324--67680434 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
67680314 AGCATGGCTG
* * *
67680324 CCAGAACAGATAA-TGTGACCGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
67680350 CCAGAACAGATAATTGTGGCAGAACCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67680377 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
67680404 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67680431 CCAG
1 CCAG
67680435 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:67696312 original size:20 final size:21
Alignment explanation
Indices: 67696284--67696325 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
67696274 GTCCCCTGTA
67696284 TTTTAC-AAAATTTTGTAAGT
1 TTTTACAAAAATTTTGTAAGT
*
67696304 TTTTCCAAAAATTTTGTAAGT
1 TTTTACAAAAATTTTGTAAGT
67696325 T
1 T
67696326 ATCGGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TTTTACAAAAATTTTGTAAGT
Found at i:67753456 original size:20 final size:20
Alignment explanation
Indices: 67753431--67753469 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67753421 AGGGGCTAAA
* *
67753431 AAGAAAAGTTGTAAAATTTG
1 AAGAAAAATTATAAAATTTG
67753451 AAGAAAAATTATAAAATTT
1 AAGAAAAATTATAAAATTT
67753470 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (20 bp):
AAGAAAAATTATAAAATTTG
Found at i:67762948 original size:14 final size:14
Alignment explanation
Indices: 67762929--67762956 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67762919 TCACCGTATG
67762929 TCATTTCGGGTCAA
1 TCATTTCGGGTCAA
67762943 TCATTTCGGGTCAA
1 TCATTTCGGGTCAA
67762957 ATCTCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
TCATTTCGGGTCAA
Found at i:67767662 original size:40 final size:39
Alignment explanation
Indices: 67767592--67767672 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 39
67767582 GCGAGGTATA
67767592 AAACTCAAACATAACACCAGCATGAAGCCTACGAGACTTT
1 AAACTCAAACATAACACCAGCATGAAGCCTACGAGA-TTT
* * * *
67767632 AAACTCAAATATAATACCAGCACT-AGGCCTACGGGATTT
1 AAACTCAAACATAACACCAGCA-TGAAGCCTACGAGATTT
67767671 AA
1 AA
67767673 CCCAGATACA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 5 0.14
40 30 0.83
41 1 0.03
ACGTcount: A:0.42, C:0.25, G:0.14, T:0.20
Consensus pattern (39 bp):
AAACTCAAACATAACACCAGCATGAAGCCTACGAGATTT
Found at i:67770241 original size:29 final size:30
Alignment explanation
Indices: 67770173--67770306 Score: 120
Period size: 29 Copynumber: 4.6 Consensus size: 30
67770163 CCCACTGACC
* *
67770173 GATCTCGCACACATAGTG-CTCGATTGA-A
1 GATCTCGCACACATAGTGCCTCAATTAACA
* * * *
67770201 GAACTCGTACACACAGTGCCTCAATT-ACT
1 GATCTCGCACACATAGTGCCTCAATTAACA
*
67770230 GATCTCGCACACATAGTG-CTCAGTTAA-A
1 GATCTCGCACACATAGTGCCTCAATTAACA
* *
67770258 GGAAT-TCGCACACACAGTGCCTCAATT-ACC
1 -G-ATCTCGCACACATAGTGCCTCAATTAACA
67770288 GATCTCGCACACATAGTGC
1 GATCTCGCACACATAGTGC
67770307 TCGGTTAAAG
Statistics
Matches: 84, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
28 24 0.29
29 52 0.62
30 8 0.10
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (30 bp):
GATCTCGCACACATAGTGCCTCAATTAACA
Found at i:67770292 original size:58 final size:57
Alignment explanation
Indices: 67770170--67770338 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 57
67770160 GTGCCCACTG
* * *
67770170 ACCGATCTCGCACACATAGTGCTCGATTGAA-GAACTCGTACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCG-TTAAAGGAATTCGCACACACAGTGCCTCAATT
*
67770227 ACTGATCTCGCACACATAGTGCTCAGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTC-GTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
67770285 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTC-GTTAAAGGAATTCGCACACACAGTGCCTC
67770339 TAATCATTCG
Statistics
Matches: 103, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
57 27 0.26
58 76 0.74
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:67770326 original size:29 final size:29
Alignment explanation
Indices: 67770234--67770335 Score: 109
Period size: 29 Copynumber: 3.5 Consensus size: 29
67770224 ATTACTGATC
*
67770234 TCGCACACATAGTGCTCAGTTAAAGGAAT
1 TCGCACACACAGTGCTCAGTTAAAGGAAT
* **
67770263 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCAGTTAAAGGAAT
* *
67770291 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCAGTTAAAGGAAT
*
67770321 TTGCACACACAGTGC
1 TCGCACACACAGTGC
67770336 CTCTAATCAT
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
28 7 0.12
29 43 0.74
30 8 0.14
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCAGTTAAAGGAAT
Found at i:67775285 original size:29 final size:29
Alignment explanation
Indices: 67775201--67775324 Score: 146
Period size: 29 Copynumber: 4.3 Consensus size: 29
67775191 AAGTCTACAT
* *
67775201 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67775229 TCATTCATATGGCCCATT-GGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
67775257 ACA-TCTGTATGGCGCATTAGGCCCAAATC
1 ACATTC-ATATGGCCCATTAGGCCCAAATC
* *
67775286 ACATTCATATGACCCATTAGGCCCAAATA
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67775315 ACACTCATAT
1 ACATTCATAT
67775325 TTATGCTTTC
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
27 7 0.09
28 31 0.38
29 41 0.51
30 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:67787754 original size:40 final size:40
Alignment explanation
Indices: 67787680--67787901 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
67787670 AACCCAAGTA
* *
67787680 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
67787719 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
67787759 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
67787799 CCTGCGGGACTTAGCCCGGATATATTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
67787839 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
67787879 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
67787902 CATTCGAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 151 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:67790248 original size:46 final size:46
Alignment explanation
Indices: 67790176--67790345 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
67790166 TGTAACCCGC
* * *
67790176 CCATAAGCGAACTCGGACTCACCTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * * *
67790222 CCATAAGTAAACTCGGAATCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * ** *
67790272 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
67790315 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
67790346 TTTGGATGCC
Statistics
Matches: 98, Mismatches: 17, Indels: 18
0.74 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
44 1 0.01
46 55 0.56
47 24 0.24
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:67790295 original size:93 final size:93
Alignment explanation
Indices: 67790183--67790355 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
67790173 CGCCCATAAG
* ** * *
67790183 CGAACTCGGACTCACCTCAACGAGCTCGGGCGTTTGCATCCATAAGTAAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGAATCAACTCA
67790248 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * *
67790276 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGAATCAACTCA
* *
67790341 ACGAGTTTGGATGCC
66 ACGAGCTCGGATGCC
67790356 CAAATATCCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTAAACTCGGAATCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:67792775 original size:15 final size:15
Alignment explanation
Indices: 67792749--67792804 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
67792739 CAAGGAAACC
67792749 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
67792764 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
67792779 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
67792794 GAATAAAGAAA
1 GAATAAAGAAA
67792805 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Done.