Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 201 of 362
Found at i:67806820 original size:47 final size:47
Alignment explanation
Indices: 67806762--67806883 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
67806752 CCATTGGCAC
*
67806762 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
67806809 TAAGATAAGGATACCATGTAAGACTATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
67806856 TAAGATAAGGATATCATGTAAGAGCATG
1 TAAGATAAGGATACCATGTAAGACCATG
67806884 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:67806926 original size:54 final size:53
Alignment explanation
Indices: 67806862--67807030 Score: 180
Period size: 55 Copynumber: 3.1 Consensus size: 53
67806852 TTGGTAAGAT
* *
67806862 AAGGATATCATGTAAGAGCATGCCAAGGCATGGAATTGATATGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATA-GTTCTATAAGGC
* ** *
67806916 AAGGAAATCATGTAAGACCATGTGAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAT-AGTT-CTATAAGGC
** * * *
67806971 AAAGG-TCCCATGTAAGACCATGCCGATGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGAT-AGTTCTATAAGGC
67807024 AAGGATA
1 AAGGATA
67807031 CCACGTCAAA
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.04
53 8 0.09
54 38 0.40
55 40 0.43
56 4 0.04
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAGTTCTATAAGGC
Found at i:67806986 original size:55 final size:54
Alignment explanation
Indices: 67806862--67807069 Score: 190
Period size: 54 Copynumber: 3.9 Consensus size: 54
67806852 TTGGTAAGAT
* * * * *
67806862 AAGGATATCATGTAAGAGCATGCCAAGGCATGGAATTGATATGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * **
67806916 AAGGAAATCATGTAAGACCATGTGAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
67806971 AAAGG-TCCCATGTAAGACCATGCCGATG-CATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCC-AAGACATGGCATTGATAAGTTCTATAAGGC
* * * * *
67807024 AAGGATACCACGTCAA-ACCACGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGT-AAGACCATGCCAAGACATGGCATTGATAAGTTC
67807070 AAAAAGGAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 6 0.05
53 35 0.28
54 41 0.33
55 38 0.30
56 6 0.05
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:67807067 original size:108 final size:109
Alignment explanation
Indices: 67806870--67807068 Score: 251
Period size: 108 Copynumber: 1.8 Consensus size: 109
67806860 ATAAGGATAT
* * *
67806870 CATGTAAGAGCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * *
67806935 ATGTGAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
66 ACGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
* * * * *
67806979 CATGTAAGACCATGCCGATGCATGGCATTGGTGA-GTTC-ATAAGGCAAGGATACCACGTCAA-A
1 CATGTAAGACCATGCCAAGGCATGGAATTGAT-ATGTTCTATAAGGCAAGGAAACCACGT-AAGA
*
67807041 CCACGTCAAGACATGGCAATGGTAAGTT
64 CCACGTCAAGACATGGCAATGATAAGTT
67807069 CAAAAAGGAA
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
108 42 0.55
109 33 0.43
110 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAACCACGTAAGACC
ACGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCC
Found at i:67807088 original size:108 final size:109
Alignment explanation
Indices: 67806870--67807093 Score: 249
Period size: 108 Copynumber: 2.1 Consensus size: 109
67806860 ATAAGGATAT
* * *
67806870 CATGTAAGAGCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * * * *
67806935 ATGTGAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
66 ACGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* * * * *
67806979 CATGTAAGACCATGCCGATGCATGGCATTGGTGA-GTTC-ATAAGGCAAGGATACCACGTCAA-A
1 CATGTAAGACCATGCCAAGGCATGGAATTGAT-ATGTTCTATAAGGCAAGGAAACCACGT-AAGA
*
67807041 CCACGTCAAGACATGGCAATGGTAAGTT-CAAAAAGGAAAAGGTTCC
64 CCACGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGG-TCC
*
67807087 CAAGTAA
1 CATGTAA
67807094 TCTAAAGAGT
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
107 11 0.11
108 51 0.53
109 33 0.34
110 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGAATTGATATGTTCTATAAGGCAAGGAAACCACGTAAGACC
ACGTCAAGACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:67809756 original size:45 final size:44
Alignment explanation
Indices: 67809672--67809756 Score: 116
Period size: 45 Copynumber: 1.9 Consensus size: 44
67809662 ATGTAATCTG
*
67809672 AACTCATTGAGTTGTGTCTGAATTCATGATATATGTGACATCCA
1 AACTCATTGAGTTGTGTCTGAATTCATGATATATATGACATCCA
* * * *
67809716 AACTCATTGAGTTTTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAATTCATGATATATATGACA
67809757 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 14 0.40
45 21 0.60
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAATTCATGATATATATGACATCCA
Found at i:67819020 original size:47 final size:47
Alignment explanation
Indices: 67818951--67819448 Score: 852
Period size: 47 Copynumber: 10.5 Consensus size: 47
67818941 GTGTGTATAC
67818951 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67818998 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67819045 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67819092 GTGAAAGTGTATATATATGTGATAAGGCCTAATGCCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67819141 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67819188 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67819237 GTGAAAGTGTATATATGTGATAAGGCCTAATGTCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
67819284 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67819331 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
67819378 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
67819425 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
67819449 TCCCGAAGGG
Statistics
Matches: 429, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 337 0.79
49 92 0.21
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:67820408 original size:28 final size:29
Alignment explanation
Indices: 67820376--67820430 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
67820366 CACGGGCGAC
*
67820376 GACACGGGGGGGT-CTAGGCCGTGTGAGG
1 GACACGGGCGGGTGCTAGGCCGTGTGAGG
* *
67820404 GACACGGGCGTGTGCTTGGCCGTGTGA
1 GACACGGGCGGGTGCTAGGCCGTGTGA
67820431 AAACCCCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.13, C:0.20, G:0.49, T:0.18
Consensus pattern (29 bp):
GACACGGGCGGGTGCTAGGCCGTGTGAGG
Found at i:67832671 original size:12 final size:12
Alignment explanation
Indices: 67832654--67832691 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
67832644 GAAATAAATA
67832654 AATAAAAACATT
1 AATAAAAACATT
67832666 AATAAAAACATT
1 AATAAAAACATT
67832678 AATAAAAACATT
1 AATAAAAACATT
67832690 AA
1 AA
67832692 AAAGGAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAAAACATT
Found at i:67834001 original size:5 final size:5
Alignment explanation
Indices: 67833993--67834046 Score: 74
Period size: 5 Copynumber: 10.6 Consensus size: 5
67833983 TTGTCATCCC
*
67833993 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT CTTTT ATGTGTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT-T-TT ATTTT
67834044 ATT
1 ATT
67834047 ATTCTTTTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
4 3 0.07
5 35 0.80
6 2 0.05
7 4 0.09
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:67836366 original size:23 final size:23
Alignment explanation
Indices: 67836326--67836370 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
67836316 GAATAAAGAA
* *
67836326 TTAAATTCGGTTTTAGTTATTTAG
1 TTAAATTCAGTTTAAGTT-TTTAG
67836350 TTAAATT-AGTTTAAGTTTTTA
1 TTAAATTCAGTTTAAGTTTTTA
67836371 ATTATGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 8 0.42
24 7 0.37
ACGTcount: A:0.29, C:0.02, G:0.13, T:0.56
Consensus pattern (23 bp):
TTAAATTCAGTTTAAGTTTTTAG
Found at i:67838285 original size:45 final size:45
Alignment explanation
Indices: 67838226--67838313 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
67838216 AAACATTTGT
* * *
67838226 CACATACATGATGAACTTAGACCATAACTCAATAAGTTCAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
*
67838271 CACATATATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGAT
67838314 CACATAGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATAAGTTCAGATGC
Found at i:67838312 original size:21 final size:21
Alignment explanation
Indices: 67838244--67838317 Score: 53
Period size: 21 Copynumber: 3.4 Consensus size: 21
67838234 TGATGAACTT
*
67838244 AGACCATAACTCAATAAGTTC
1 AGACCACAACTCAATAAGTTC
* *
67838265 AGATGCCACATATATC-ATGAA-CTC
1 AGA--CCACA-A-CTCAAT-AAGTTC
67838289 AGACCACAACTCAATAAGTTC
1 AGACCACAACTCAATAAGTTC
*
67838310 AGATCACA
1 AGACCACA
67838318 TAGTTCCTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
20 4 0.10
21 15 0.38
22 5 0.12
23 4 0.10
24 8 0.20
25 4 0.10
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.22
Consensus pattern (21 bp):
AGACCACAACTCAATAAGTTC
Found at i:67839952 original size:54 final size:54
Alignment explanation
Indices: 67839761--67840022 Score: 312
Period size: 54 Copynumber: 4.9 Consensus size: 54
67839751 TTTCCTTTTT
* * ** * *
67839761 GAACTTATCATTGTCATGTCTTTACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * * * **
67839814 GAACTCACCAATGCCATGCCTTGGCATGGTATTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * * * *
67839868 GTAACTTATCAATGCCATGTCTTGACATGGTTTTACATGATTTCCTTGCCTTATA
1 G-AACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
***
67839923 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTATTTTATA
1 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
67839977 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTT
67840023 ATCTTACCAA
Statistics
Matches: 179, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
52 2 0.01
53 40 0.22
54 92 0.51
55 43 0.24
56 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (54 bp):
GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:67840075 original size:47 final size:47
Alignment explanation
Indices: 67840001--67840169 Score: 302
Period size: 47 Copynumber: 3.6 Consensus size: 47
67839991 CATGCCTTGG
* *
67840001 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67840048 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
67840095 CATGGTCTTACATGGTATCTTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
67840142 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
67840170 GTGCCAATAC
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:67840295 original size:90 final size:92
Alignment explanation
Indices: 67840141--67840383 Score: 337
Period size: 91 Copynumber: 2.6 Consensus size: 92
67840131 CATGTTCCAA
* * * * ** **
67840141 ACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATACCACATCTTGATGTGGTCTTACATGGA
1 ACATGGTCTTACACGGGATCCTTGACTTA---CCAATGCCATGTCTTGACATGGTCTTACATGGA
*
67840206 GTCCTTAATCAATGCCGATG-CATGTCTTG
63 GTCCTTAATCAATGCCGATGCCATGCCTTG
67840235 ACATGGTCTTACACGGGATCCTTGACTTACCAATGCCATGTCTTGA-ATGGTCTTACATGGAGTC
1 ACATGGTCTTACACGGGATCCTTGACTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGTC
**
67840299 CTTAATCAATTTCGATGCCATGCCTTG
66 CTTAATCAATGCCGATGCCATGCCTTG
*
67840326 ACATGGTCTTACACGGGATCCTTGCCTTACCAATGCCATGTCTTGACATGGTCTTACA
1 ACATGGTCTTACACGGGATCCTTGACTTACCAATGCCATGTCTTGACATGGTCTTACA
67840384 CGGTATCCTT
Statistics
Matches: 136, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
90 32 0.24
91 67 0.49
92 11 0.08
94 26 0.19
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (92 bp):
ACATGGTCTTACACGGGATCCTTGACTTACCAATGCCATGTCTTGACATGGTCTTACATGGAGTC
CTTAATCAATGCCGATGCCATGCCTTG
Found at i:67840481 original size:44 final size:44
Alignment explanation
Indices: 67840396--67840482 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
67840386 GTATCCTTAA
* * *
67840396 CCGTCAATTCCTCCTTAAATGCCATGTTATGAACATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
* *
67840440 CCGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATAGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAA-CATAGACTTT
67840483 GAGATATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATAGACTTTT
Found at i:67844137 original size:23 final size:23
Alignment explanation
Indices: 67844101--67844145 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
67844091 GTCACATTTA
*
67844101 TTTATATATTTAATTT-TTTATT
1 TTTATATATCTAATTTATTTATT
67844123 TTTATTATATCTAATTTATTTAT
1 TTTA-TATATCTAATTTATTTAT
67844146 CAAACCTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 11 0.55
24 5 0.25
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTATATATCTAATTTATTTATT
Found at i:67854604 original size:40 final size:40
Alignment explanation
Indices: 67854512--67854729 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
67854502 ACCCAAGTAT
* ** * *
67854512 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
67854550 CTTC-GGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
67854589 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
67854629 CTTCGGGTCTTAGCCC-GATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
67854668 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
67854708 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
67854730 CATTCGAATA
Statistics
Matches: 151, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
37 6 0.04
38 22 0.15
39 38 0.25
40 81 0.54
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:67854666 original size:79 final size:79
Alignment explanation
Indices: 67854512--67854729 Score: 257
Period size: 79 Copynumber: 2.8 Consensus size: 79
67854502 ACCCAAGTAT
* ** * * *
67854512 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTC-GGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTC
*
67854575 ACTAGCATAAATGC
66 ACTAGCACAAATGC
* *
67854589 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCC-GATATAG-
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
*
67854652 CAACTCGCACAAATGC
65 C-ACTAGCACAAATGC
* *
67854668 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
67854730 CATTCGAATA
Statistics
Matches: 121, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
77 12 0.10
78 20 0.17
79 73 0.60
80 16 0.13
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:67854721 original size:119 final size:117
Alignment explanation
Indices: 67854512--67854729 Score: 339
Period size: 119 Copynumber: 1.8 Consensus size: 117
67854502 ACCCAAGTAT
* * *
67854512 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTCGGTCTTAGCCCGGATATGGTCAC
1 CTTCGGGATTTAGCCCGATATAACAACTCGCACAAGGCCTTCGGTCTTAGCCCGGATATAGTCAC
*
67854577 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
66 TAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
* * *
67854629 CTTCGGG-TCTTAGCCCGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAGT
1 CTTCGGGAT-TTAGCCCGATATAACAACTCGCAC-AAGGCCTTCGG-TCTTAGCCCGGATATAGT
67854693 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
63 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
67854730 CATTCGAATA
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
116 1 0.01
117 28 0.31
118 10 0.11
119 52 0.57
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (117 bp):
CTTCGGGATTTAGCCCGATATAACAACTCGCACAAGGCCTTCGGTCTTAGCCCGGATATAGTCAC
TAGCATAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
Found at i:67862908 original size:40 final size:40
Alignment explanation
Indices: 67862836--67863018 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
67862826 CTCGCACAAG
* * *
67862836 GCCTTCGGGTCTTAG-CCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
67862875 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
67862915 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
67862955 GCCTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAT
67862995 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67863019 CATTCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 17 0.13
40 105 0.83
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:67867718 original size:40 final size:40
Alignment explanation
Indices: 67867620--67867799 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 40
67867610 TATATACCTA
* * *
67867620 AATTGCACTTGCGTGCCTCTGATTGTACTTCGGTACCCTT
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTT
*
67867660 GAATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCTT
1 -AATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTT
* * *
67867701 AATTGCACTTACGTGCCCCTATTTGTACTTCGGCACTCTT
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTT
* * * * *
67867741 GATTCCACCTA--TGCCCCTATTTGTACTTTGGTA-CCTCT
1 AATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT-T
** *
67867779 GGTTGCACTTCCGTGCCCCTG
1 AATTGCACTTACGTGCCCCTG
67867800 GTTATACTCC
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
37 2 0.02
38 28 0.24
40 51 0.44
41 36 0.31
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (40 bp):
AATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTT
Found at i:67867794 original size:78 final size:80
Alignment explanation
Indices: 67867620--67867799 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 80
67867610 TATATACCTA
* * * * * *
67867620 AATTGCACTTGCGTGCCTCTGATTGTACTTCGGTACCCTTGAATTGCACTTACATGCCCCTGTTT
1 AATTGCACTTACGTGCCCCTGATTGTACTTCGGCACCCTTGAATTCCACCTA-ATGCCCCTATTT
67867685 GTACTTCGGTACCCTT
65 GTACTTCGGTACCCTT
*
67867701 AATTGCACTTACGTGCCCCT-ATTTGTACTTCGGCACTCTTG-ATTCCACCT-ATGCCCCTATTT
1 AATTGCACTTACGTGCCCCTGA-TTGTACTTCGGCACCCTTGAATTCCACCTAATGCCCCTATTT
*
67867763 GTACTTTGGTA-CCTCT
65 GTACTTCGGTACCCT-T
** *
67867779 GGTTGCACTTCCGTGCCCCTG
1 AATTGCACTTACGTGCCCCTG
67867800 GTTATACTCC
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
77 3 0.04
78 39 0.46
80 8 0.09
81 35 0.41
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.37
Consensus pattern (80 bp):
AATTGCACTTACGTGCCCCTGATTGTACTTCGGCACCCTTGAATTCCACCTAATGCCCCTATTTG
TACTTCGGTACCCTT
Found at i:67868196 original size:17 final size:17
Alignment explanation
Indices: 67868176--67868208 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67868166 TATATTATGG
67868176 ATGATCTTATATGTAAT
1 ATGATCTTATATGTAAT
*
67868193 ATGATGTTATATGTAA
1 ATGATCTTATATGTAA
67868209 AAGAGATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.45
Consensus pattern (17 bp):
ATGATCTTATATGTAAT
Found at i:67877020 original size:15 final size:16
Alignment explanation
Indices: 67876993--67877022 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
67876983 TATAAAACAC
67876993 ATATCATTATTTCATT
1 ATATCATTATTTCATT
67877009 ATATCA-TATTTCAT
1 ATATCATTATTTCAT
67877023 ATACCATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATCATTATTTCATT
Found at i:67879413 original size:101 final size:103
Alignment explanation
Indices: 67879229--67879589 Score: 522
Period size: 102 Copynumber: 3.6 Consensus size: 103
67879219 TAGCCGTTAT
** * *
67879229 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAAACCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
67879294 AA-CAGCACATAG-AACCCCCTTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
67879330 TGGTGGATATCGCACTTAGCA-CACCAATGAATCGGGG-ATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
67879393 AATCAGCACATAGCAACCCCCCTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
67879431 TGGTGGATATCGCACTTAGCACCACCAATGAAATC-GGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
* *
67879494 GAATCAGCACATAGC-AGCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATA
* * * **
67879533 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCC
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCC
67879590 TTTTATATAC
Statistics
Matches: 238, Mismatches: 14, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
99 27 0.11
100 25 0.11
101 73 0.31
102 87 0.37
103 26 0.11
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
Found at i:67879501 original size:26 final size:26
Alignment explanation
Indices: 67879466--67879515 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
67879456 CAATGAAATC
*
67879466 GGGAATCAGCACTTAGCAACCCCTCG
1 GGGAATCAGCACATAGCAACCCCTCG
*
67879492 GGGAATCAGCACATAGCAGCCCCT
1 GGGAATCAGCACATAGCAACCCCT
67879516 TTCACATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.34, G:0.24, T:0.14
Consensus pattern (26 bp):
GGGAATCAGCACATAGCAACCCCTCG
Found at i:67886950 original size:102 final size:102
Alignment explanation
Indices: 67886765--67887129 Score: 610
Period size: 102 Copynumber: 3.6 Consensus size: 102
67886755 TAACCGTTAT
* *
67886765 TGGTGGAT-CCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
67886829 AATCAGCACATAGCAACCCCCTTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
67886866 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
67886931 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
67886968 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
67887032 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
* * * **
67887071 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
67887130 TTTATATACA
Statistics
Matches: 252, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
101 36 0.14
102 150 0.60
103 65 0.26
104 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:67887030 original size:26 final size:26
Alignment explanation
Indices: 67887000--67887051 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67886990 CACCAATGAA
*
67887000 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
67887026 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
67887052 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:67887490 original size:29 final size:29
Alignment explanation
Indices: 67887457--67887520 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
67887447 TAATCCACCA
67887457 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
67887486 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
67887516 CCCAA
1 CCCAA
67887521 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:67887494 original size:30 final size:30
Alignment explanation
Indices: 67887464--67887520 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
67887454 CCACCCAACT
67887464 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
67887493 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
67887521 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:67890400 original size:19 final size:19
Alignment explanation
Indices: 67890376--67890414 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
67890366 GACATATAAC
* *
67890376 TCTTGATATGGCATGAAAA
1 TCTTGAGATGACATGAAAA
*
67890395 TCTTGAGATGATATGAAAA
1 TCTTGAGATGACATGAAAA
67890414 T
1 T
67890415 GACTAGAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (19 bp):
TCTTGAGATGACATGAAAA
Found at i:67893065 original size:13 final size:13
Alignment explanation
Indices: 67893048--67893153 Score: 86
Period size: 13 Copynumber: 8.2 Consensus size: 13
67893038 GTTAAATGTG
67893048 TAAATGAAATGGT
1 TAAATGAAATGGT
* *
67893061 AAAATGAAATGTT
1 TAAATGAAATGGT
* *
67893074 TAGATGAAATGCT
1 TAAATGAAATGGT
* *
67893087 TATACGAAATGGT
1 TAAATGAAATGGT
**
67893100 TAAATGAAATTAT
1 TAAATGAAATGGT
*
67893113 TATATGAAATGGT
1 TAAATGAAATGGT
* *
67893126 TATATGAATTGGT
1 TAAATGAAATGGT
** *
67893139 TGTATGAACTGGT
1 TAAATGAAATGGT
67893152 TA
1 TA
67893154 CATGGAAATA
Statistics
Matches: 74, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 74 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (13 bp):
TAAATGAAATGGT
Found at i:67893139 original size:39 final size:39
Alignment explanation
Indices: 67893051--67893139 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 39
67893041 AAATGTGTAA
*
67893051 ATGAAATGGTAAAATGAAATGTTTAGATGAAATGCTTAT
1 ATGAAATGGTTAAATGAAATGTTTAGATGAAATGCTTAT
* * *
67893090 ACGAAATGGTTAAATGAAAT-TATTATATGAAATGGTTAT
1 ATGAAATGGTTAAATGAAATGT-TTAGATGAAATGCTTAT
*
67893129 ATGAATTGGTT
1 ATGAAATGGTT
67893140 GTATGAACTG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.02
39 42 0.98
ACGTcount: A:0.42, C:0.02, G:0.20, T:0.36
Consensus pattern (39 bp):
ATGAAATGGTTAAATGAAATGTTTAGATGAAATGCTTAT
Found at i:67893468 original size:20 final size:22
Alignment explanation
Indices: 67893439--67893490 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
67893429 AGGCCATGTA
*
67893439 GGTATTGATACTTAT-AT-GAT
1 GGTATCGATACTTATCATAGAT
* *
67893459 GGTATCGATATTTCTCATAGAT
1 GGTATCGATACTTATCATAGAT
67893481 GGTATCGATA
1 GGTATCGATA
67893491 TCATTTAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 12 0.44
21 2 0.07
22 13 0.48
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (22 bp):
GGTATCGATACTTATCATAGAT
Found at i:67929752 original size:29 final size:29
Alignment explanation
Indices: 67929719--67929776 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
67929709 ATTTAATACG
*
67929719 AACTTTGCA-AAATTACATTTTTGCCCCTA
1 AACTTT-CACAAATTACACTTTTGCCCCTA
*
67929748 AACTTTTACAAATTACACTTTTGCCCCTA
1 AACTTTCACAAATTACACTTTTGCCCCTA
67929777 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 25 0.96
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (29 bp):
AACTTTCACAAATTACACTTTTGCCCCTA
Found at i:67931561 original size:2 final size:2
Alignment explanation
Indices: 67931556--67931596 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
67931546 AAAGAGAGTA
67931556 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
67931597 ATAGGGAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:67934227 original size:48 final size:47
Alignment explanation
Indices: 67934156--67934520 Score: 235
Period size: 48 Copynumber: 7.6 Consensus size: 47
67934146 TAAAGTACTA
** *
67934156 ATGCCATGTCCCCTACATAGTCTTACA-TGAATCCACATATTATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAA--CACATATTATCGCCG
* *
67934204 ATGCCATGTCCCAGACATGGTCTTACACTG-GCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAACACATAT-T-ATCGCCG
* * *
67934252 ATGCCACT-TCCCAGACATGGTCTTACACTG-GCACATACATCATCGCCA
1 ATGCCA-TGTCCCAGACATGGTCTTACACTGAACACAT--ATTATCGCCG
* * * ** * * *
67934300 ATGCCATGTCCTAGACCTGGTCTTACACTTGTACGTACATCATCCCCG
1 ATGCCATGTCCCAGACATGGTCTTACAC-TGAACACATATTATCGCCG
* * * *
67934348 AT-CCATGTCCCAGACATGGTCTTACACTGGCATACATTTTATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GAACACATATTATCGCCG
* * * * *
67934395 ATGCCATGTCCCAAATATGGTCTTATGCA-TGAACATATCTCGGAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTA--CACTGAACACATAT--TATCGCCG
* * * * *
67934444 ATGCCATGTCCCAAATATGGTCTTATGCA-TGAACATATCTCGGAT-GCCG
1 ATGCCATGTCCCAGACATGGTCTTA--CACTGAACACATAT--TATCGCCG
*
67934493 ATGCCATGTCCCGGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
67934521 GGAATCTCAT
Statistics
Matches: 263, Mismatches: 38, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
46 8 0.03
47 38 0.14
48 129 0.49
49 80 0.30
50 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAACACATATTATCGCCG
Found at i:67934416 original size:95 final size:96
Alignment explanation
Indices: 67934190--67934419 Score: 288
Period size: 95 Copynumber: 2.4 Consensus size: 96
67934180 ACATGAATCC
*
67934190 ACATATTATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCACCGATG
1 ACAT-TTATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCACCGATG
67934255 CCACTTCCCAGACATGGTCTTACACTGGCACAT
65 CCACTTCCCAGACATGGTCTTACACTGG-ACAT
* * * * * * * *
67934288 ACA-TCATCGCCAATGCCATGTCCTAGACCTGGTCTTACACTTGTACGTACATCATCCCCGAT-C
1 ACATTTATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCACCGATGC
67934351 CA-TGTCCCAGACATGGTCTTACACTGG-CAT
66 CACT-TCCCAGACATGGTCTTACACTGGACAT
* * *
67934381 ACATTTTATCGCTGATGCCATGTCCCAAATATGGTCTTA
1 ACA-TTTATCGCCGATGCCATGTCCCAGACATGGTCTTA
67934420 TGCATGAACA
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
93 6 0.05
94 1 0.01
95 53 0.47
96 50 0.44
98 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (96 bp):
ACATTTATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCACCGATGC
CACTTCCCAGACATGGTCTTACACTGGACAT
Found at i:67934517 original size:49 final size:49
Alignment explanation
Indices: 67934394--67934504 Score: 222
Period size: 49 Copynumber: 2.3 Consensus size: 49
67934384 TTTTATCGCT
67934394 GATGCCATGTCCCAAATATGGTCTTATGCATGAACATATCTCGGATGCC
1 GATGCCATGTCCCAAATATGGTCTTATGCATGAACATATCTCGGATGCC
67934443 GATGCCATGTCCCAAATATGGTCTTATGCATGAACATATCTCGGATGCC
1 GATGCCATGTCCCAAATATGGTCTTATGCATGAACATATCTCGGATGCC
67934492 GATGCCATGTCCC
1 GATGCCATGTCCC
67934505 GGACATGGTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 62 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAAATATGGTCTTATGCATGAACATATCTCGGATGCC
Found at i:67936095 original size:12 final size:12
Alignment explanation
Indices: 67936078--67936105 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
67936068 AGAGTTTGCC
67936078 ATTTGAAATAAT
1 ATTTGAAATAAT
67936090 ATTTGAAATAAT
1 ATTTGAAATAAT
67936102 ATTT
1 ATTT
67936106 TTTATTGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (12 bp):
ATTTGAAATAAT
Found at i:67936395 original size:31 final size:29
Alignment explanation
Indices: 67936338--67936395 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
67936328 ATAGTTTAGT
* *
67936338 TACCACATTGGACATTTTCAAAGTACATG
1 TACCACATTAGACATTTTAAAAGTACATG
67936367 TACCACATTAGACATTTTATAAAAGTACA
1 TACCACATTAGACA-TTT-TAAAAGTACA
67936396 AATACCAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
30 3 0.12
31 9 0.36
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (29 bp):
TACCACATTAGACATTTTAAAAGTACATG
Found at i:67936402 original size:31 final size:29
Alignment explanation
Indices: 67936338--67936402 Score: 76
Period size: 31 Copynumber: 2.2 Consensus size: 29
67936328 ATAGTTTAGT
* * **
67936338 TACCACATTGGACATTTTCAAAGTACATG
1 TACCACATTAGACATTTTAAAAGTACAAA
67936367 TACCACATTAGACATTTTATAAAAGTACAAA
1 TACCACATTAGACA-TTT-TAAAAGTACAAA
67936398 TACCA
1 TACCA
67936403 GAATAAAACG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 13 0.43
30 3 0.10
31 14 0.47
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (29 bp):
TACCACATTAGACATTTTAAAAGTACAAA
Found at i:67939190 original size:21 final size:21
Alignment explanation
Indices: 67939166--67939213 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
67939156 TTCTGTTCTG
*
67939166 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
67939187 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
67939208 CTCCGC
1 CTCCGC
67939214 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.58, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:67944727 original size:9 final size:9
Alignment explanation
Indices: 67944713--67944840 Score: 96
Period size: 9 Copynumber: 13.6 Consensus size: 9
67944703 ATGTATTAGT
67944713 TAAGTTATG
1 TAAGTTATG
67944722 TAAGTTGTTATG
1 TAA---GTTATG
67944734 TACA-TTATG
1 TA-AGTTATG
*
67944743 TGAGTTATG
1 TAAGTTATG
*
67944752 TAAATTATG
1 TAAGTTATG
*
67944761 CAAGTTATG
1 TAAGTTATG
*
67944770 TGAGTTATG
1 TAAGTTATG
67944779 TAAGTTGTTATG
1 TAA---GTTATG
*
67944791 TAAATTATG
1 TAAGTTATG
*
67944800 TAAGTTATA
1 TAAGTTATG
* *
67944809 TGAGTTATT
1 TAAGTTATG
67944818 TAAGTTATG
1 TAAGTTATG
* *
67944827 TAATTTATT
1 TAAGTTATG
67944836 TAAGT
1 TAAGT
67944841 AATGATCAAT
Statistics
Matches: 93, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
8 1 0.01
9 74 0.80
12 17 0.18
13 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:67944789 original size:39 final size:39
Alignment explanation
Indices: 67944746--67944823 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
67944736 CATTATGTGA
*
67944746 GTTATGTAAATTATGCAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGCAAGTTATATGAGTTATGTAAGTT
* *
67944785 GTTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTT
1 GTTATGTAAATTATGCAAGTTATATGAGTTATGTAAGTT
67944824 ATGTAATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (39 bp):
GTTATGTAAATTATGCAAGTTATATGAGTTATGTAAGTT
Found at i:67944840 original size:57 final size:57
Alignment explanation
Indices: 67944713--67944840 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
67944703 ATGTATTAGT
* * *
67944713 TAAGTTATGTAAGTTGTTATGTACATTATGTGAGTTATGTAAATTATGCAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGCAAGTTATG
* * * **
67944770 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATTTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGCAAGTTATG
* *
67944827 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
67944841 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGCAAGTTATG
Found at i:67945443 original size:241 final size:241
Alignment explanation
Indices: 67945020--67945472 Score: 836
Period size: 241 Copynumber: 1.9 Consensus size: 241
67945010 TTAAGGTTAT
67945020 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
67945085 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCAATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCAATATAAGGCA
67945150 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTCT-GAGAGA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGT-TGGAGAGA
67945214 AGGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
195 AGGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
* * *
67945261 ATAAATATTCAATAGTAATTGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGAT
1 ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
* *
67945326 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGCA
66 TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCAATATAAGGCA
67945391 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
131 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
*
67945456 GGTCAGTTATTGTTGTA
196 GGTCAGCTATTGTTGTA
67945473 CCTAGAACAG
Statistics
Matches: 205, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
240 1 0.00
241 204 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (241 bp):
ATAAATATTCAATAGTAAATGAGATCGATAGAACTTTTTCCAAGTCTTTTTGAATTTTTTAAGAT
TCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAACTCAATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAA
GGTCAGCTATTGTTGTAATTTTAATGAACAAGCAAGCTACATGGTA
Found at i:67950292 original size:81 final size:80
Alignment explanation
Indices: 67950127--67950428 Score: 265
Period size: 81 Copynumber: 3.7 Consensus size: 80
67950117 CATACATATG
* * * * *
67950127 AAAACGACGACGTTTACTTTAAAGTACTATG-TTTTTGCGGCGTTTTTTTT-AAAACGTCGCTAA
1 AAAACGACGCCG-TTACGTTAAACT-CTATGTTTTTTGCGGC-TTTTTTTTAAAAACGCCGCTAC
* *
67950190 TCCCCTAAATCTTC-ATAT
63 TCCCCTAAATATCCAAT-T
* * * * *
67950208 AAAACGACGCCGTTACGTTATACT-TTTTTCTTTTTGTGGCATTTTTTTTAAAAACGCCGGTACT
1 AAAACGACGCCGTTACGTTAAACTCTATGT-TTTTTGCGGC-TTTTTTTTAAAAACGCCGCTACT
*
67950272 CCCCTAAAAATCCAATT
64 CCCCTAAATATCCAATT
* * * * *
67950289 AAAACAACACCGTTTTCGTTAAACTGCTATGTTTTTTGCGGC-GTTTTTAAAAAACGCCGCTACT
1 AAAACGACGCCG-TTACGTTAAACT-CTATGTTTTTTGCGGCTTTTTTTTAAAAACGCCGCTACT
*
67950353 CTCCTAAATATCCAATT
64 CCCCTAAATATCCAATT
* * *
67950370 AAAACGACGCCGTTTTCGTT-AACTGCTATGTTTTTTGCGGCGTTTTTTAAATAAACGCC
1 AAAACGACGCCG-TTACGTTAAACT-CTATGTTTTTTGCGGCTTTTTTTTAA-AAACGCC
67950429 AGTAATCTCT
Statistics
Matches: 183, Mismatches: 29, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.01
80 47 0.26
81 103 0.56
82 19 0.10
83 9 0.05
84 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (80 bp):
AAAACGACGCCGTTACGTTAAACTCTATGTTTTTTGCGGCTTTTTTTTAAAAACGCCGCTACTCC
CCTAAATATCCAATT
Found at i:67950408 original size:80 final size:82
Alignment explanation
Indices: 67950250--67950428 Score: 281
Period size: 81 Copynumber: 2.2 Consensus size: 82
67950240 TTTGTGGCAT
* *
67950250 TTTTTTTAAAAACGCCGGTACTCCCCTAAAAATCCAATTAAAACAACACCGTTTTCGTTAAACTG
1 TTTTTTAAAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACAACACCGTTTTCGTTAAACTG
67950315 CTATGTTTTTTGCGGCG
66 CTATGTTTTTTGCGGCG
* * * *
67950332 -TTTTTAAAAAACGCCGCTACTCTCCTAAATATCCAATTAAAACGACGCCGTTTTCGTT-AACTG
1 TTTTTTAAAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACAACACCGTTTTCGTTAAACTG
67950395 CTATGTTTTTTGCGGCG
66 CTATGTTTTTTGCGGCG
67950412 TTTTTTAAATAAACGCC
1 TTTTTTAAA-AAACGCC
67950429 AGTAATCTCT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
80 22 0.25
81 60 0.67
82 7 0.08
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.35
Consensus pattern (82 bp):
TTTTTTAAAAAACGCCGCTACTCCCCTAAAAATCCAATTAAAACAACACCGTTTTCGTTAAACTG
CTATGTTTTTTGCGGCG
Found at i:67950832 original size:7 final size:7
Alignment explanation
Indices: 67950820--67950937 Score: 62
Period size: 7 Copynumber: 16.6 Consensus size: 7
67950810 ATTAAACCGG
67950820 CCTAAAC
1 CCTAAAC
*
67950827 CCTAAAA
1 CCTAAAC
* *
67950834 CATGAAC
1 CCTAAAC
*
67950841 ACTTAAAAC
1 -CCTAA-AC
67950850 CCTAAAC
1 CCTAAAC
67950857 CCTAAAC
1 CCTAAAC
*
67950864 CCT-AAT
1 CCTAAAC
67950870 CCTCAAAC
1 CCT-AAAC
67950878 CCT-AAC
1 CCTAAAC
** *
67950884 AATTAAAT
1 -CCTAAAC
*
67950892 CATAAAC
1 CCTAAAC
*
67950899 CCTACAC
1 CCTAAAC
67950906 CCTAAAC
1 CCTAAAC
67950913 CCTAAAC
1 CCTAAAC
*
67950920 TCC-AAAT
1 -CCTAAAC
*
67950927 CATAAAC
1 CCTAAAC
67950934 CCTA
1 CCTA
67950938 TATATATATT
Statistics
Matches: 81, Mismatches: 22, Indels: 16
0.68 0.18 0.13
Matches are distributed among these distances:
6 9 0.11
7 54 0.67
8 16 0.20
9 2 0.02
ACGTcount: A:0.45, C:0.36, G:0.01, T:0.19
Consensus pattern (7 bp):
CCTAAAC
Found at i:67950913 original size:35 final size:35
Alignment explanation
Indices: 67950859--67950937 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 35
67950849 CCCTAAACCC
* *
67950859 TAAACCCTAATCCTCAAACCCTAACAAT-TAAATCA
1 TAAACCCTAACCCTCAAACCCTAA-AATCCAAATCA
*
67950894 TAAACCCTACACCCT-AAACCCTAAACTCCAAATCA
1 TAAACCCTA-ACCCTCAAACCCTAAAATCCAAATCA
67950929 TAAACCCTA
1 TAAACCCTA
67950938 TATATATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
34 2 0.05
35 33 0.85
36 4 0.10
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.20
Consensus pattern (35 bp):
TAAACCCTAACCCTCAAACCCTAAAATCCAAATCA
Found at i:67951290 original size:41 final size:41
Alignment explanation
Indices: 67951227--67951501 Score: 417
Period size: 41 Copynumber: 6.7 Consensus size: 41
67951217 GACTTCTAGT
* *
67951227 GGCGTTTTACCAAAAGCACCGCTAATGCTCGGGTCTTTTGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
*
67951268 GCCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* *
67951309 GGCGTTTTACCAAACGCGCCGCTAGTGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* * *
67951350 GGCGTTTTACAAAAAGCGCCGATAGTGCTC-GGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* *
67951390 GGCGTTTTACAAAAAGCGCCGCTAGTGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* * *
67951431 GGCGTTTTACCAAAAGCGTCGCTAATGTTCTGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
*
67951472 GGCGTTTTACCAAAAGCGCCGCTATTGCTC
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTC
67951502 TTTTGTAGCG
Statistics
Matches: 215, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 39 0.18
41 176 0.82
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (41 bp):
GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
Found at i:67951454 original size:122 final size:122
Alignment explanation
Indices: 67951227--67951518 Score: 417
Period size: 122 Copynumber: 2.4 Consensus size: 122
67951217 GACTTCTAGT
* * * *
67951227 GGCGTTTTACCAAAAGCACCGCTAATGCTCGGGTCTTTTGCGCCGTTTTACCAAAAGCGCCGCTA
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTC-GGTCTTTAGCGGCGTTTTACAAAAAGCGCCGCTA
* *
67951292 ATGCTCGGGTCTTTAGCGGCGTTTTACCAAACGCGCCGCTAGTGCTCGGGTCTTTAGC
65 ATGCTCGGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* * * *
67951350 GGCGTTTTACAAAAAGCGCCGATAGTGCTCGGTCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAG
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGTCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAA
* * *
67951415 TGCTCGGGTCTTTAGCGGCGTTTTACCAAAAGCGTCGCTAATGTTCTGGTCTTTAGC
66 TGCTCGGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
* *
67951472 GGCGTTTTACCAAAAGCGCCGCTATTGCTC--TTTTGTAGCGGCGTTTT
1 GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGTCTT-TAGCGGCGTTTT
67951519 TTACTAAAAC
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
120 3 0.02
121 12 0.08
122 110 0.73
123 26 0.17
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.30
Consensus pattern (122 bp):
GGCGTTTTACCAAAAGCGCCGCTAATGCTCGGTCTTTAGCGGCGTTTTACAAAAAGCGCCGCTAA
TGCTCGGGTCTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
Found at i:67951521 original size:41 final size:39
Alignment explanation
Indices: 67951227--67951559 Score: 346
Period size: 41 Copynumber: 8.2 Consensus size: 39
67951217 GACTTCTAGT
* * *
67951227 GGCGTTTTACCAAAAGCACCGCTAATGCTCGGGTCTTTTGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTC--GTCTTTAGC
* *
67951268 GCCGTTTTACCAAAAGCGCCGCTAATGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTC--GTCTTTAGC
*
67951309 GGCGTTTTACCAAACGCGCCGCTAGTGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTC--GTCTTTAGC
* *
67951350 GGCGTTTTACAAAAAGCGCCGATAGTGCTCGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTC-GTCTTTAGC
*
67951390 GGCGTTTTACAAAAAGCGCCGCTAGTGCTCGGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTC--GTCTTTAGC
* * *
67951431 GGCGTTTTACCAAAAGCGTCGCTAATGTTCTGGTCTTTAGC
1 GGCGTTTTACCAAAAGCGCCGCT-A-GTGCTCGTCTTTAGC
* *
67951472 GGCGTTTTACCAAAAGCGCCGCTATTGCTC-TTTTGTAGC
1 GGCGTTTTACCAAAAGCGCCGCTAGTGCTCGTCTT-TAGC
* * * * *
67951511 GGCGTTTTTTACTAAAA-CACCGCTATTACTCTGTTTTTAGC
1 GGCG--TTTTACCAAAAGCGCCGCTAGTGCTC-GTCTTTAGC
67951552 GGCGTTTT
1 GGCGTTTT
67951560 TCGTAAGACG
Statistics
Matches: 262, Mismatches: 22, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
38 3 0.01
39 15 0.06
40 52 0.20
41 183 0.70
42 5 0.02
43 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.31
Consensus pattern (39 bp):
GGCGTTTTACCAAAAGCGCCGCTAGTGCTCGTCTTTAGC
Found at i:67951629 original size:12 final size:12
Alignment explanation
Indices: 67951614--67951639 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67951604 GTTTTTTGGT
67951614 AAAACGCCGCTA
1 AAAACGCCGCTA
67951626 AAAACGCCGCTA
1 AAAACGCCGCTA
67951638 AA
1 AA
67951640 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:67959849 original size:94 final size:94
Alignment explanation
Indices: 67959735--67959949 Score: 227
Period size: 94 Copynumber: 2.3 Consensus size: 94
67959725 AAGCTGACGC
* * ** *** *
67959735 CATGTCCCAGACAGGACTTACACTAGCTTGTATATCGCGAGGTTGATGCATGTCCCAGACATGT-
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCAAAGCATGTCCCAGACATGTC
* * *
67959799 TCTACACTAGCTCTCGTCTCAAT-GCCGATG
66 T-TACACTAGCACTCATAT-AATGGCCGATG
* * * *
67959829 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCGAGGCCAAAGCATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCAAAGCATGTCCCAGACATGTC
**
67959894 TTACACTAGCACTCATATTGTGGCCGATG
66 TTACACTAGCACTCATATAATGGCCGATG
* *
67959923 CATGTCCTAGACATGTCTTAGACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
67959950 ACATAAATGA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
93 1 0.01
94 96 0.98
95 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAATATCGCGAGGCCAAAGCATGTCCCAGACATGTC
TTACACTAGCACTCATATAATGGCCGATG
Found at i:67959935 original size:46 final size:47
Alignment explanation
Indices: 67959779--67959951 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 47
67959769 TCGCGAGGTT
* * * **
67959779 GATGCATGTCCCAGACATGT-TCTACACTAGCTCTCGTCTCAAT-GCC
1 GATGCATGTCCCAGACATGTCT-TACACTAGCACTCATATCTGTGGCC
* * * * *
67959825 GATGCATGTCCCAAACATGTCTTACACTGGC-TTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACT-CATATCT-GTGGCC
* * *
67959873 AAAGCATGTCCTAGACATGTCTTACACTAGCACTCATAT-TGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATATCTGTGGCC
* *
67959919 GATGCATGTCCTAGACATGTCTTAGACTAGCAC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAC
67959952 ATAAATGATC
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.64
47 2 0.02
48 33 0.32
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATATCTGTGGCC
Found at i:67974166 original size:25 final size:25
Alignment explanation
Indices: 67974131--67974180 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
67974121 TGAGGATACA
67974131 GTCTTCCACCAATGGTATGCAGTGT
1 GTCTTCCACCAATGGTATGCAGTGT
* *
67974156 GTCTTCTACCAGTGGTATGCAGTGT
1 GTCTTCCACCAATGGTATGCAGTGT
67974181 CCTTCAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.26, T:0.34
Consensus pattern (25 bp):
GTCTTCCACCAATGGTATGCAGTGT
Found at i:67979062 original size:15 final size:15
Alignment explanation
Indices: 67979042--67979070 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
67979032 GGAAAATTGG
67979042 AATCGAGACCCATTA
1 AATCGAGACCCATTA
67979057 AATCGAGACCCATT
1 AATCGAGACCCATT
67979071 GGGTGTCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.28, G:0.14, T:0.21
Consensus pattern (15 bp):
AATCGAGACCCATTA
Found at i:67989086 original size:13 final size:13
Alignment explanation
Indices: 67989068--67989093 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67989058 ATTAAATGGG
67989068 GAGAAAATATTCC
1 GAGAAAATATTCC
67989081 GAGAAAATATTCC
1 GAGAAAATATTCC
67989094 CTTTTCCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (13 bp):
GAGAAAATATTCC
Found at i:67990145 original size:21 final size:21
Alignment explanation
Indices: 67990106--67990145 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67990096 CATTTAGGAA
* *
67990106 GGGTGTCACGATATTCAAAAG
1 GGGTGTCACGACATGCAAAAG
67990127 GGGTGTCACGACATGCAAA
1 GGGTGTCACGACATGCAAA
67990146 CCAGATTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (21 bp):
GGGTGTCACGACATGCAAAAG
Found at i:67991104 original size:15 final size:14
Alignment explanation
Indices: 67991074--67991100 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67991064 CCGAACGAAC
67991074 ATGAAAAAGTTCCA
1 ATGAAAAAGTTCCA
67991088 ATGAAAAAGTTCC
1 ATGAAAAAGTTCC
67991101 CAATTTGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.15, G:0.15, T:0.22
Consensus pattern (14 bp):
ATGAAAAAGTTCCA
Found at i:67995692 original size:24 final size:24
Alignment explanation
Indices: 67995665--67995710 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
67995655 ATGTTATTAC
67995665 TTCATTTTCCATCTATTTTATTTT
1 TTCATTTTCCATCTATTTTATTTT
* *
67995689 TTCATTTTTCATTTATTTTATT
1 TTCATTTTCCATCTATTTTATT
67995711 ACTTAATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (24 bp):
TTCATTTTCCATCTATTTTATTTT
Found at i:68000762 original size:55 final size:55
Alignment explanation
Indices: 68000703--68000826 Score: 160
Period size: 55 Copynumber: 2.2 Consensus size: 55
68000693 CTTAGGGTCG
* * * *
68000703 TGTCGCAGGCCATGTGTCAGATCGTGTGTGTATCCAAAATAAGGTCACACAGTCA
1 TGTCGCAAGCCATGTGCCAAATCATGTGTGTATCCAAAATAAGGTCACACAGTCA
* *
68000758 TGTCGCAAGCCATGTGCCAAATCATGTTTGTATTCAAAATAAGGTCACAC-GTCCA
1 TGTCGCAAGCCATGTGCCAAATCATGTGTGTATCCAAAATAAGGTCACACAGT-CA
*
68000813 TATCGCCAAGCCAT
1 TGTCG-CAAGCCAT
68000827 ATAACTTTCT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
54 2 0.03
55 50 0.83
56 8 0.13
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (55 bp):
TGTCGCAAGCCATGTGCCAAATCATGTGTGTATCCAAAATAAGGTCACACAGTCA
Found at i:68005533 original size:26 final size:26
Alignment explanation
Indices: 68005503--68005582 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
68005493 GGAGGAAGTG
*
68005503 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGA
*
68005529 TACTGATACTGGCAGCTTTGCTGCGA
1 TACTGTTACTGGCAGCTTTGCTGCGA
* *
68005555 TATTATTACTGGCAGCTTTGCTGCGA
1 TACTGTTACTGGCAGCTTTGCTGCGA
68005581 TA
1 TA
68005583 TTGGTGTGTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGA
Found at i:68005667 original size:5 final size:5
Alignment explanation
Indices: 68005652--68005681 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
68005642 GTGGTGTGTT
*
68005652 GGTTG GTTTG GGTTG GGTTG GGTTG GGTTG
1 GGTTG GGTTG GGTTG GGTTG GGTTG GGTTG
68005682 CATCATTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.57, T:0.43
Consensus pattern (5 bp):
GGTTG
Found at i:68009593 original size:46 final size:48
Alignment explanation
Indices: 68009507--68009727 Score: 201
Period size: 46 Copynumber: 4.7 Consensus size: 48
68009497 GTAAGGTGCC
* * *
68009507 GATGCCATGTCCCAAACATGGTCTTACACTGACTAT-CATCTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCTCGTAGGCT
* *
68009555 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTTG-AGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAGGCT
* * * * *
68009601 GATGCATGTCGCAGACATGTCTTACACTAGCTCT-CGTCTC-AATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAGGCT
*
68009647 GATGTCATGTCCCA-AGCATGGTCTTACACTGGCTCTA-ATAAT-GT-GGCT
1 GATG-CATGTCCCAGA-CAT-GTCTTACACTGGCTCTACAT-CTCGTAGGCT
* *
68009695 GATGCATGTCCTAGACATGTCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
68009728 ACAAACAAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
45 2 0.01
46 77 0.53
47 36 0.25
48 28 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCGTAGGCT
Found at i:68009678 original size:94 final size:91
Alignment explanation
Indices: 68009504--68009727 Score: 249
Period size: 94 Copynumber: 2.4 Consensus size: 91
68009494 TGGGTAAGGT
* * *
68009504 GCCGATGCCATGTCCCAAACATGGTCTTACACT-GACTATCATCTCGTAGCTGATGCATGTCCCA
1 GCCGATG-CATGT-CCAGACAT-GTCTTACACTAG-CTCTCATCTCATAGCTGATGCATGTCCCA
**
68009568 GACATGTCTTACACTGGCT-TACATCTTGAG
62 GACATGTCTTACACTGGCTCTA-ATAATGAG
*
68009598 GCCGATGCATGTCGCAGACATGTCTTACACTAGCTCTCGTCTCA-ATGCTGATGTCATGTCCCA-
1 GCCGATGCATGTC-CAGACATGTCTTACACTAGCTCTCATCTCATA-GCTGATG-CATGTCCCAG
*
68009661 AGCATGGTCTTACACTGGCTCTAATAATGTG
63 A-CAT-GTCTTACACTGGCTCTAATAATGAG
*
68009692 GCTGATGCATGTCCTAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCC-AGACATGTCTTACACTAGCTC
68009728 ACAAACAAAT
Statistics
Matches: 114, Mismatches: 8, Indels: 16
0.83 0.06 0.12
Matches are distributed among these distances:
91 1 0.01
92 27 0.24
93 25 0.22
94 59 0.52
95 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (91 bp):
GCCGATGCATGTCCAGACATGTCTTACACTAGCTCTCATCTCATAGCTGATGCATGTCCCAGACA
TGTCTTACACTGGCTCTAATAATGAG
Found at i:68012759 original size:43 final size:43
Alignment explanation
Indices: 68012706--68012826 Score: 179
Period size: 43 Copynumber: 2.8 Consensus size: 43
68012696 TTGAGATCTA
* *
68012706 ATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* *
68012749 ATTACGTGTAAGACAATGTCTGGGACATTGGCATCGTATTATG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* * *
68012792 ATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATC
68012827 AATATGTGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
Found at i:68012844 original size:43 final size:42
Alignment explanation
Indices: 68012711--68012851 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 42
68012701 ATCTAATTAC
*
68012711 ATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGAT-T
1 ATGTAAGACCATGTCTGGGACATTGGCATCGTATTGTGATAT
* * *
68012752 ACGTGTAAGACAATGTCTGGGACATTGGCATCGTATTATGATTT
1 A--TGTAAGACCATGTCTGGGACATTGGCATCGTATTGTGATAT
* * *
68012796 CATGTAAGACCCTGTCTGGGACAGTGGCATC-AATATGTGATAAT
1 -ATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGTGAT-AT
68012840 ATGTAAGACCAT
1 ATGTAAGACCAT
68012852 ATCCGGGATA
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 78 0.93
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (42 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGTATTGTGATAT
Found at i:68015897 original size:40 final size:40
Alignment explanation
Indices: 68015842--68016051 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
68015832 ATTTGAATGA
*
68015842 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
68015882 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
68015922 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * **
68015962 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT--TGC
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * * * * *
68016000 TATACCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TAT-CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
68016041 TATCC-GGCTAA
1 TATCCGGGCTAA
68016052 ATTCGAAGAA
Statistics
Matches: 152, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
38 3 0.02
39 34 0.22
40 108 0.71
41 7 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:68024021 original size:40 final size:40
Alignment explanation
Indices: 68023966--68024176 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
68023956 ATTTGAATGA
*
68023966 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
68024006 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
68024046 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
68024086 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
68024126 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
68024166 TATCC-GGCTAA
1 TATCCGGGCTAA
68024177 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:68028862 original size:40 final size:40
Alignment explanation
Indices: 68028806--68028947 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
68028796 CATTTGAATG
* *
68028806 ATATCCGGGGTAAGTCCCGAAGACATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGTCCCGAAGACATTTATGCGAGTTGA-T
* * *
68028846 TTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGACATTTATGCGAGTTGAT
* * * * *
68028886 ATATCCGGGCTAAGACCCGAAGGCAGTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGACATTTATGCGAGTTGAT
* * *
68028926 ATACCCGGGTTAAGACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
68028948 GCAATTGTGC
Statistics
Matches: 90, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 87 0.97
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGACATTTATGCGAGTTGAT
Found at i:68028948 original size:40 final size:40
Alignment explanation
Indices: 68028850--68028957 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
68028840 GTGATTTTAT
* * *
68028850 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATAC
* *
68028890 CCGGGCTAAGACCCGAAGGCAGTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATAC
*
68028930 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCAATTGTGC
68028958 TTGTGGTTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATAC
Found at i:68032112 original size:26 final size:26
Alignment explanation
Indices: 68032083--68032138 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
68032073 TGATAAAAAT
68032083 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68032109 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
68032135 TGAT
1 TGAT
68032139 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:68050095 original size:40 final size:40
Alignment explanation
Indices: 68050038--68050130 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 40
68050028 CTAACGGGGT
* * * **
68050038 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAGGC
*
68050078 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAGGC
68050118 TAAGTCCCGAAGG
1 TAAGTCCCGAAGG
68050131 GGCTAAGTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCAGGC
Found at i:68050136 original size:16 final size:16
Alignment explanation
Indices: 68050115--68050146 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
68050105 ACTAATTCCA
68050115 GGCTAAGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
68050131 GGCTAAGTCCCGAAGG
1 GGCTAAGTCCCGAAGG
68050147 CATTTGTGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.38, T:0.12
Consensus pattern (16 bp):
GGCTAAGTCCCGAAGG
Found at i:68050160 original size:56 final size:56
Alignment explanation
Indices: 68050074--68050185 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
68050064 GATTAATTCT
68050074 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCAGGCTAAGTCCCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCAGGCTAAGTCCCGAAG
*
68050130 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAG
68050186 ACATTTGTGC
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
56 53 0.98
57 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (56 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAG
Found at i:68050185 original size:40 final size:40
Alignment explanation
Indices: 68050130--68050223 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
68050120 AGTCCCGAAG
* * *
68050130 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGACATTTGTGCGAGTGACCATATCC
*
68050170 GGGCTAAGTCCCGAAGACATTTGTGCTAGTGACCATATCC
1 GGGCTAAGTCCCGAAGACATTTGTGCGAGTGACCATATCC
*
68050210 GGGCTAAGACCCGA
1 GGGCTAAGTCCCGA
68050224 CGGCCTTGTG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGACATTTGTGCGAGTGACCATATCC
Found at i:68050215 original size:96 final size:96
Alignment explanation
Indices: 68050033--68050223 Score: 242
Period size: 96 Copynumber: 2.0 Consensus size: 96
68050023 GGATGCTAAC
* * * * *
68050033 GGGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCTGGGCTAAGTCCCGAAGGCATTTGT
1 GGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGACATTTGT
* * *
68050098 GCGAGTTACTAATTCCAGGCTAAGTCCCGAA
66 GCGAGTGACCAATTCCAGGCTAAGACCCGAA
* *
68050129 GGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGACATTTG
1 GGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGACATTTG
* *
68050193 TGCTAGTGACC-ATATCCGGGCTAAGACCCGA
65 TGCGAGTGACCAAT-TCCAGGCTAAGACCCGA
68050224 CGGCCTTGTG
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
95 4 0.05
96 77 0.95
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (96 bp):
GGGGCTAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGACATTTGT
GCGAGTGACCAATTCCAGGCTAAGACCCGAA
Found at i:68058746 original size:45 final size:44
Alignment explanation
Indices: 68058641--68058778 Score: 192
Period size: 45 Copynumber: 3.2 Consensus size: 44
68058631 ATTCTATCTC
* * *
68058641 ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAATC-GA-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCACAT
* *
68058683 ATA-CGATGCCGATGTCCCAGACATGGTCTTACACGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
68058727 ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCACAT
68058772 ATATCGA
1 ATATCGA
68058779 AATCCTATGG
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
41 29 0.35
42 6 0.07
43 1 0.01
44 3 0.04
45 45 0.54
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCACAT
Found at i:68059889 original size:14 final size:15
Alignment explanation
Indices: 68059872--68059900 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
68059862 TCACGAAAAT
68059872 TTCACACAT-ATAAA
1 TTCACACATAATAAA
68059886 TTCACACATAATAAA
1 TTCACACATAATAAA
68059901 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:68065601 original size:47 final size:47
Alignment explanation
Indices: 68065517--68065642 Score: 164
Period size: 47 Copynumber: 2.7 Consensus size: 47
68065507 AAAGTTGAAA
* *
68065517 AGTACCTATACCATGGCCTGTAGCCAAATCAATGTAACT-TACCTCGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCT-CCTCGG
* * ** *
68065564 AGTACCTATACCATGGCCCGTAACCAAGTCAAAGTAACTCTTTTCTG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCGG
*
68065611 AATACCTATACCATGGCCCGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
68065643 GGTATTAATC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 67 0.99
48 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.25
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCGG
Found at i:68067956 original size:18 final size:17
Alignment explanation
Indices: 68067935--68067979 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
68067925 TTTTAGTCTC
68067935 ATTTTTTATTTGTTTCTT
1 ATTTTTTATTTGTTT-TT
*
68067953 ATTTTAATATTTGTTTTT
1 ATTTT-TTATTTGTTTTT
68067971 ATGTTTTTA
1 AT-TTTTTA
68067980 AATGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTGTTTTT
Found at i:68068486 original size:48 final size:47
Alignment explanation
Indices: 68068394--68068536 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 47
68068384 GATTAATAAG
* * *
68068394 AGCCAGCGTAAGACCATGTTTGGGACATGGCATC-AGCATTGATATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGATATG-T
*
68068442 AGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACATCGATATCTGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA--TGT
* * * * * *
68068491 -GCCAGTATAAGACCATATCTGGGATATGACATCGGCCTCGATATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
68068537 GATTTCATGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
46 3 0.04
48 74 0.91
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
Found at i:68068665 original size:48 final size:47
Alignment explanation
Indices: 68068588--68068742 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 47
68068578 AAATTTCGTA
*
68068588 TAAGACCATGTCAGGGACAT-G---C-CACCGATGTGAGGTCCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
* ** *
68068630 TAAGACCATGTCTGGGACATGGCATCAGCACCGATGTGAGATTTCGTA
1 TAAGACCATGTCTGGGACATGGCATC-GCACCGATGTGAGGTCCCGTG
* * * * * *
68068678 TAAAACCATATCTGGGATATGGCATCG-A--TATGT-A-GACCCATG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
68068720 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
68068743 TTTGGCATTC
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 41 0.46
43 2 0.02
44 4 0.04
46 2 0.02
47 1 0.01
48 39 0.44
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
Found at i:68068674 original size:90 final size:90
Alignment explanation
Indices: 68068575--68068742 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
68068565 TGGTATTGAG
* * * * *
68068575 GTGAAATTTCGTATAAGACCATGTCAGGGACATGCCACCGATGTG-AGGTCCCGTGTAAGACCAT
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTA-GACCCATGTAAGACCAT
68068639 GTCTGGGACATGGCATCAGCACCGAT
65 GTCTGGGACATGGCATCAGCACCGAT
* * * * *
68068665 GTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAGACCATG
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
68068730 TCTGGGACATGGC
66 TCTGGGACATGGC
68068743 TTTGGCATTC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 66 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (90 bp):
GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
TCTGGGACATGGCATCAGCACCGAT
Found at i:68080728 original size:47 final size:47
Alignment explanation
Indices: 68080644--68080769 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
68080634 AAAGTTGAAA
* *
68080644 AGTACCTATACCATGGCCTGTAGCCAAATCAATGTAACT-TACCTCGG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCT-CCTCGG
* * ** *
68080691 AGTACCTATACCATGGCCCGTAACCAAGTCAAAGTAACTCTTTTCTG
1 AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCGG
* *
68080738 AATACCTATACCATGGGCCGTAGCCAAATCAA
1 AGTACCTATACCATGGCCCGTAGCCAAATCAA
68080770 GGTATTAATC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 66 0.99
48 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAGCCAAATCAAAGTAACTCTCCTCGG
Found at i:68083079 original size:18 final size:17
Alignment explanation
Indices: 68083058--68083102 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
68083048 TTTTAGTCTC
68083058 ATTTTTTATTTGTTTCTT
1 ATTTTTTATTTGTTT-TT
*
68083076 ATTTTAATATTTGTTTTT
1 ATTTT-TTATTTGTTTTT
68083094 ATGTTTTTA
1 AT-TTTTTA
68083103 AATGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTGTTTTT
Found at i:68083609 original size:48 final size:47
Alignment explanation
Indices: 68083517--68083659 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 47
68083507 GATTAATAAG
* * *
68083517 AGCCAGCGTAAGACCATGTTTGGGACATGGCATC-AGCATTGATATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGATATG-T
*
68083565 AGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACATCGATATCTGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA--TGT
* * * * * *
68083614 -GCCAGTATAAGACCATATCTGGGATATGACATCGGCCTCGATATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
68083660 GATTTCATGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
46 3 0.04
48 74 0.91
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
Found at i:68083788 original size:48 final size:47
Alignment explanation
Indices: 68083711--68083865 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 47
68083701 AAATTTCGTA
*
68083711 TAAGACCATGTCAGGGACAT-G---C-CACCGATGTGAGGTCCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
* ** *
68083753 TAAGACCATGTCTGGGACATGGCATCAGCACCGATGTGAGATTTCGTA
1 TAAGACCATGTCTGGGACATGGCATC-GCACCGATGTGAGGTCCCGTG
* * * * * *
68083801 TAAAACCATATCTGGGATATGGCATCG-A--TATGT-A-GACCCATG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
68083843 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
68083866 TTTGGCATTC
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 41 0.46
43 2 0.02
44 4 0.04
46 2 0.02
47 1 0.01
48 39 0.44
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
Found at i:68083797 original size:90 final size:90
Alignment explanation
Indices: 68083698--68083865 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
68083688 TGGTATTGAG
* * * * *
68083698 GTGAAATTTCGTATAAGACCATGTCAGGGACATGCCACCGATGTG-AGGTCCCGTGTAAGACCAT
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTA-GACCCATGTAAGACCAT
68083762 GTCTGGGACATGGCATCAGCACCGAT
65 GTCTGGGACATGGCATCAGCACCGAT
* * * * *
68083788 GTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAGACCATG
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
68083853 TCTGGGACATGGC
66 TCTGGGACATGGC
68083866 TTTGGCATTC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 66 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (90 bp):
GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
TCTGGGACATGGCATCAGCACCGAT
Found at i:68096776 original size:47 final size:47
Alignment explanation
Indices: 68096692--68096817 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 47
68096682 AAAGTTGAAA
** * *
68096692 AGTACCTATACCATGGCTTGTAGCCAAATCAATGTAACT-TACCTCGG
1 AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCT-CCTCGG
* ** *
68096739 AGTACCTATACCATGGCCCGTAACCAAGTCAAAGTAACTCTTTTCTG
1 AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCTCCTCGG
* * *
68096786 AATACCTATACCATGGCCCGTAGCTAAATCAA
1 AGTACCTATACCATGGCCCGTAACCAAATCAA
68096818 GGTATTAATC
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
47 65 0.98
48 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCGTAACCAAATCAAAGTAACTCTCCTCGG
Found at i:68099131 original size:18 final size:17
Alignment explanation
Indices: 68099110--68099154 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
68099100 TTTTAGTCTC
68099110 ATTTTTTATTTGTTTCTT
1 ATTTTTTATTTGTTT-TT
*
68099128 ATTTTAATATTTGTTTTT
1 ATTTT-TTATTTGTTTTT
68099146 ATGTTTTTA
1 AT-TTTTTA
68099155 AATGTATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.18, C:0.02, G:0.07, T:0.73
Consensus pattern (17 bp):
ATTTTTTATTTGTTTTT
Found at i:68099661 original size:48 final size:47
Alignment explanation
Indices: 68099569--68099711 Score: 146
Period size: 48 Copynumber: 3.0 Consensus size: 47
68099559 GATTAATAAG
* * *
68099569 AGCCAGCGTAAGACCATGTTTGGGACATGGCATC-AGCATTGATATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGATATG-T
*
68099617 AGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACATCGATATCTGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA--TGT
* * * * * *
68099666 -GCCAGTATAAGACCATATCTGGGATATGACATCGGCCTCGATATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
68099712 GATTTCATGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
46 3 0.04
48 74 0.91
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGT
Found at i:68099840 original size:48 final size:47
Alignment explanation
Indices: 68099763--68099917 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 47
68099753 AAATTTCGTA
*
68099763 TAAGACCATGTCAGGGACAT-G---C-CACCGATGTGAGGTCCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
* ** *
68099805 TAAGACCATGTCTGGGACATGGCATCAGCACCGATGTGAGATTTCGTA
1 TAAGACCATGTCTGGGACATGGCATC-GCACCGATGTGAGGTCCCGTG
* * * * * *
68099853 TAAAACCATATCTGGGATATGGCATCG-A--TATGT-A-GACCCATG
1 TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
68099895 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
68099918 TTTGGCATTC
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 41 0.46
43 2 0.02
44 4 0.04
46 2 0.02
47 1 0.01
48 39 0.44
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (47 bp):
TAAGACCATGTCTGGGACATGGCATCGCACCGATGTGAGGTCCCGTG
Found at i:68099849 original size:90 final size:90
Alignment explanation
Indices: 68099750--68099917 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
68099740 TGGTATTGAG
* * * * *
68099750 GTGAAATTTCGTATAAGACCATGTCAGGGACATGCCACCGATGTG-AGGTCCCGTGTAAGACCAT
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTA-GACCCATGTAAGACCAT
68099814 GTCTGGGACATGGCATCAGCACCGAT
65 GTCTGGGACATGGCATCAGCACCGAT
* * * * *
68099840 GTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCGATATGTAGACCCATGTAAGACCATG
1 GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
68099905 TCTGGGACATGGC
66 TCTGGGACATGGC
68099918 TTTGGCATTC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 66 0.99
91 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (90 bp):
GTGAAATTTCGTATAAAACCATATCAGGGACATGCCACCGATATGTAGACCCATGTAAGACCATG
TCTGGGACATGGCATCAGCACCGAT
Found at i:68111788 original size:20 final size:20
Alignment explanation
Indices: 68111763--68111807 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
68111753 AGGGACTAAA
*
68111763 ATGAAAAGTTGTA-AAATTTG
1 ATGAAAAATT-TAGAAATTTG
*
68111783 ATGAAAAATTTAGAAATTTT
1 ATGAAAAATTTAGAAATTTG
68111803 ATGAA
1 ATGAA
68111808 TACATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTTAGAAATTTG
Found at i:68112788 original size:61 final size:61
Alignment explanation
Indices: 68112693--68112816 Score: 239
Period size: 61 Copynumber: 2.0 Consensus size: 61
68112683 TAATGTCTTG
*
68112693 AAAGAGTATTGCATCATGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
1 AAAGAGTATTGCATCAGGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
68112754 AAAGAGTATTGCATCAGGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
1 AAAGAGTATTGCATCAGGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
68112815 AA
1 AA
68112817 CATGTTTGAT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (61 bp):
AAAGAGTATTGCATCAGGAGCTCATCTATGTTACTTGATTGATATGAAGATTTTGGAGACT
Found at i:68120082 original size:19 final size:19
Alignment explanation
Indices: 68120055--68120095 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
68120045 AATTCTCATA
68120055 TTTGATTATCTAATTTAAT
1 TTTGATTATCTAATTTAAT
* * *
68120074 TTTGGTTATTTAATTTTAT
1 TTTGATTATCTAATTTAAT
68120093 TTT
1 TTT
68120096 TCACATTTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (19 bp):
TTTGATTATCTAATTTAAT
Found at i:68123128 original size:42 final size:42
Alignment explanation
Indices: 68122967--68123128 Score: 166
Period size: 42 Copynumber: 3.8 Consensus size: 42
68122957 TACCATACCA
* * * *
68122967 ATGCCATATCCCAGATATGGTGTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CTAAGTCTCATATAG
* * * * * *
68123009 ATACCAATAGCCCAGCTATGGTCATACACCAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACTAAGTCTCATATAG
* *
68123052 ATGCCATATCCCAAATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACTAAGTCTCATATAG
*
68123094 ATGCCATATCCCATATATGGTCTTACA-TATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACTA-AGTCT
68123129 TAATAACCCT
Statistics
Matches: 99, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.69
43 30 0.30
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACTAAGTCTCATATAG
Found at i:68124777 original size:46 final size:45
Alignment explanation
Indices: 68124726--68124894 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 45
68124716 ATCTCGTAGT
68124726 CGATGCATGTCCCAAACATGTCTTACACTGGCT-TATATCTCAAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTATA-ATCTC-AGGC
* ** * *
68124772 CGATGCATGTCCCAAACATGTCTTACACTAGC-ACTCGTCTCGATGT
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTA-TAATCTC-AGGC
* * *
68124818 CGATACCATGTCCCAGACATGGTCTTACACTGGTTCTCATAATGT--GGC
1 CGAT-GCATGTCCCAAACAT-GTCTTACACTGG--CT-ATAATCTCAGGC
*
68124866 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
68124895 AGCTCACGCA
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
46 51 0.51
47 28 0.28
48 16 0.16
50 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTATAATCTCAGGC
Found at i:68125059 original size:26 final size:27
Alignment explanation
Indices: 68125004--68125061 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
68124994 TATTTCCATA
*
68125004 ATCAA-GCAATTCATACTATAATAATT
1 ATCAATGCAATTCAAACTATAATAATT
68125030 -TCAATGCAATTCAAACGTAT-AT-ATT
1 ATCAATGCAATTCAAAC-TATAATAATT
68125055 ATCAATG
1 ATCAATG
68125062 TAGTTGTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 7 0.25
26 18 0.64
27 3 0.11
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (27 bp):
ATCAATGCAATTCAAACTATAATAATT
Found at i:68132015 original size:17 final size:18
Alignment explanation
Indices: 68131990--68132031 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
68131980 GTTGATGTGC
*
68131990 ATGAGATAA-CATAAATT
1 ATGAAATAATCATAAATT
*
68132007 ATGAAATAATCATAAGTT
1 ATGAAATAATCATAAATT
*
68132025 GTGAAAT
1 ATGAAAT
68132032 GTGGACAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.31
Consensus pattern (18 bp):
ATGAAATAATCATAAATT
Found at i:68133444 original size:21 final size:21
Alignment explanation
Indices: 68133418--68133473 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
68133408 TACACGGCCT
*
68133418 GACCACACGGGTGTGTCCCTA
1 GACCACACGGGTGTGTCCATA
* * *
68133439 GACCACACTGGCGTGTCTATA
1 GACCACACGGGTGTGTCCATA
*
68133460 GACCACACGAGTGT
1 GACCACACGGGTGT
68133474 AACACCCCTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (21 bp):
GACCACACGGGTGTGTCCATA
Found at i:68141931 original size:40 final size:40
Alignment explanation
Indices: 68141874--68142058 Score: 266
Period size: 40 Copynumber: 4.7 Consensus size: 40
68141864 GTATGATATT
68141874 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
68141914 TGGAATTGTATCTGGGCTTAAAGACCCGCAAGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
68141954 TAGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
68141994 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* * *
68142034 AGGAATGGTATCCAGG-TTAAAGACC
1 TGGAATTGTATCCGGGCTTAAAGACC
68142059 TGTAGGCTTG
Statistics
Matches: 132, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 9 0.07
40 123 0.93
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:68146825 original size:22 final size:22
Alignment explanation
Indices: 68146797--68146918 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
68146787 TTCCACATCC
68146797 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
68146819 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
68146843 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
68146866 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
68146890 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
68146913 ATCACA
1 ATCACA
68146919 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:68146832 original size:47 final size:47
Alignment explanation
Indices: 68146769--68147114 Score: 500
Period size: 47 Copynumber: 7.3 Consensus size: 47
68146759 CCCTTCGGGA
* * *
68146769 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
68146816 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
68146863 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68146910 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68146957 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68147004 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68147051 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
68147100 CCTATCACATATATA
1 CTTATCACATATATA
68147115 TACTTGTACA
Statistics
Matches: 281, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 239 0.85
49 40 0.14
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:68161850 original size:46 final size:47
Alignment explanation
Indices: 68161778--68161951 Score: 162
Period size: 47 Copynumber: 3.7 Consensus size: 47
68161768 GGTAGGGTGC
* * *
68161778 CGATGCCATATCCCAGACATGGTCTTACACTAACTATCATTTCGTAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTATCATATCGTAGT
* * * *
68161826 CGATG-CATGTCCCGGACATGTCTTACACTAGC-ACTCGTCTCGATA-C
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTA-TCATATCG-TAGT
* * *
68161872 CGATGCCATGTCCCAGACAAGGTCTTACAC-AGGCTCTCATAAT-GTGGT
1 CGATGCCATGTCCCAGAC-ATGTCTTACACTA-GCTATCAT-ATCGTAGT
68161920 CGATG-CATGTCCCAGACATGTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGC
68161952 CCACAATAAC
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
45 1 0.01
46 35 0.34
47 40 0.39
48 26 0.25
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTATCATATCGTAGT
Found at i:68161938 original size:94 final size:94
Alignment explanation
Indices: 68161777--68161951 Score: 255
Period size: 94 Copynumber: 1.9 Consensus size: 94
68161767 GGGTAGGGTG
* * *
68161777 CCGATGCCATATCCCAGACATGGTCTTACACTAACTATCATTTCGTAGTCGATGCATGTCCCGGA
1 CCGATGCCATATCCCAGACAAGGTCTTACACTAACTATCATATCGTAGTCGATGCATGTCCCAGA
68161842 CATGTCTTACACTAGCACTCGTCTCGATA
66 CATGTCTTACACTAGCACTCGTCTCGATA
* * * *
68161871 CCGATGCCATGTCCCAGACAAGGTCTTACAC-AGGCTCTCATAAT-GTGGTCGATGCATGTCCCA
1 CCGATGCCATATCCCAGACAAGGTCTTACACTA-ACTATCAT-ATCGTAGTCGATGCATGTCCCA
68161934 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
68161952 CCACAATAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 1 0.01
94 70 0.97
95 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
CCGATGCCATATCCCAGACAAGGTCTTACACTAACTATCATATCGTAGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCACTCGTCTCGATA
Found at i:68167467 original size:46 final size:46
Alignment explanation
Indices: 68167394--68167566 Score: 140
Period size: 47 Copynumber: 3.7 Consensus size: 46
68167384 GGTAGGGTGC
* * *
68167394 CGATGCCATATCCCAGTCATGGTCTTACACTA-ACTATCATTTCGTAGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGACT-TCATATCGTAGT
* * * *
68167442 CGATGCATGTCCCGGACATGTCTTACACTAGCACTT-GTCTCGATA-C
1 CGATGCATGTCCCAGACATGTCTTACACTAG-ACTTCATATCG-TAGT
* * *
68167488 CGATGCCATGTCCCAGACAAGGTCTTACAC-AGGCTCTCATAAT-GTGGT
1 CGATG-CATGTCCCAGAC-ATGTCTTACACTAGACT-TCAT-ATCGTAGT
68167536 CGATGCATGTCCCAGACATGTCTTACACTAG
1 CGATGCATGTCCCAGACATGTCTTACACTAG
68167567 CCCACAATAA
Statistics
Matches: 101, Mismatches: 14, Indels: 21
0.74 0.10 0.15
Matches are distributed among these distances:
46 32 0.32
47 43 0.43
48 25 0.25
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGACTTCATATCGTAGT
Found at i:68178601 original size:40 final size:40
Alignment explanation
Indices: 68178553--68178845 Score: 344
Period size: 40 Copynumber: 7.3 Consensus size: 40
68178543 ATTTGAAGTG
* *
68178553 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
68178593 TTATCCGGGCTAAGTCCCGAAGGCATTTTATGCTAGTGATTT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGA-TT
* *
68178635 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
68178675 ATATCC-GGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
68178714 TTATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
*
68178754 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
68178794 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
68178834 ATATCC-GGCTAA
1 ATATCCGGGCTAA
68178846 ATTCGAAGAA
Statistics
Matches: 224, Mismatches: 21, Indels: 17
0.85 0.08 0.06
Matches are distributed among these distances:
38 3 0.01
39 38 0.17
40 130 0.58
41 24 0.11
42 29 0.13
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:68178773 original size:80 final size:80
Alignment explanation
Indices: 68178554--68178825 Score: 379
Period size: 80 Copynumber: 3.4 Consensus size: 80
68178544 TTTGAAGTGA
* * * *
68178554 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGTCCCGAAGGCA
68178618 TTTTATGCTAGTGATTTT
65 -TTTATGCTAGTGA-TTT
68178636 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCC-GGCTAAGTCCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGTCCCGAAGGCAT
68178700 TTATGCTAGTGATTT
66 TTATGCTAGTGATTT
* *
68178715 TATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGTCCCGAAGGCAT
* * *
68178780 TTGTGCGAGTTG-TTA
66 TTATGCTAG-TGATTT
* * *
68178795 TACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
68178826 TTGTGGTTAT
Statistics
Matches: 174, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
79 47 0.27
80 67 0.39
81 20 0.11
82 37 0.21
83 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAGTGATTT
Found at i:68181614 original size:46 final size:45
Alignment explanation
Indices: 68181471--68181683 Score: 207
Period size: 46 Copynumber: 4.6 Consensus size: 45
68181461 TGTGTGAGCT
* ** * * *
68181471 AGTGTAAGACAT-TCTGGGACATGTATCGGCCACAATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGACGA-AGCC
* * * *
68181516 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGAGTC-AAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCGAGACGAA--GCC
68181564 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGACG-AAGCC
* * * *
68181610 AGTGTAAGACATGTCTGGGACATGCATCGGCTGCGAGATG-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGACGAAGCC
68181654 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
68181684 AGCACGGTTA
Statistics
Matches: 142, Mismatches: 17, Indels: 17
0.81 0.10 0.10
Matches are distributed among these distances:
44 11 0.08
45 23 0.16
46 63 0.44
47 23 0.16
48 22 0.15
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTTCGAGACGAAGCC
Found at i:68181718 original size:50 final size:50
Alignment explanation
Indices: 68181466--68181787 Score: 173
Period size: 46 Copynumber: 6.8 Consensus size: 50
68181456 TCACTTGTGT
* * * * *
68181466 GAGCTAGTGTAAGA-CAT-TCTGGGACAT-GTATCGGC-CAC-AATATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCAAAAATGA
* * ***
68181511 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCG-AGTCA--A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGCAAAAATGA
* * * * * **
68181559 GTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTCG-AGACGT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACGCAAAAATGA
* * * *
68181606 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TGC-GAGAT--
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCAAAAATGA
* * *** **
68181649 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGGTTATGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCAAAAATGA
* * * *
68181699 GATCTAGTGTAAGACCATGT-TCGGGACATGGCATCGGC-CTCAAAAATGA
1 GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCAGCACGCAAAAATGA
*
68181748 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC
68181788 CTTACCCATG
Statistics
Matches: 217, Mismatches: 41, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
44 15 0.07
45 27 0.12
46 56 0.26
47 24 0.11
48 22 0.10
49 38 0.18
50 35 0.16
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGCAAAAATGA
Found at i:68184374 original size:15 final size:15
Alignment explanation
Indices: 68184354--68184387 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
68184344 AATGGATTTG
68184354 CTTTAAACCAATCTT
1 CTTTAAACCAATCTT
68184369 CTTTAAACCAATCTT
1 CTTTAAACCAATCTT
68184384 CTTT
1 CTTT
68184388 CTTTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (15 bp):
CTTTAAACCAATCTT
Found at i:68186335 original size:48 final size:48
Alignment explanation
Indices: 68186264--68186629 Score: 254
Period size: 48 Copynumber: 7.6 Consensus size: 48
68186254 ATGTGTGCTA
** *
68186264 GTGTAAGATTATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCT
* *** * *
68186312 GTGTAAGACCATGTTTGGGACATGGCATCGATG-TTGA-TATGTGTG-CT
1 GTGTAAGACCATGTCTGGGACATGGCATCG--GCCACATTATGAGAGCCT
* * * *
68186359 AGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCA
1 -GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCT
* * * * * * *
68186408 ATGTAAGACCATGTCTAGGACATGACATCAG-CA-TTGATATGTGTG-CT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT--TATGAGAGCCT
* *
68186455 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCA
1 -GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCT
* *
68186504 GTGTAAGACCATGTCTGGGACATGGCATC-G--ATATTGA-GACGAGAGCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATT-ATGA-GAG-CCT
* * * * *
68186551 AGTGTAAAAGCATGTTTGGGACATGGTATCGGCCTCGACA-TAT--GAGCCA
1 -GTGTAAGACCATGTCTGGGACATGGCATCGG-C-C-ACATTATGAGAGCCT
*
68186600 GTTTAAGACCATGTCTGGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
68186630 ACAAATTACC
Statistics
Matches: 242, Mismatches: 53, Indels: 46
0.71 0.16 0.13
Matches are distributed among these distances:
45 6 0.02
46 6 0.02
47 8 0.03
48 206 0.85
49 7 0.03
50 5 0.02
52 1 0.00
53 1 0.00
54 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCT
Found at i:68186414 original size:96 final size:96
Alignment explanation
Indices: 68186250--68186630 Score: 493
Period size: 96 Copynumber: 4.0 Consensus size: 96
68186240 GACAATTGGG
* * *
68186250 TGATATGTGTGCTAGTGTAAGATTATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCTGTG
1 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
68186315 TAAGACCATGTTTGGGACATGGCATCGATGT
66 TAAGACCATGTCTGGGACATGGCATCGATGT
*
68186346 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAATG
1 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
* *
68186411 TAAGACCATGTCTAGGACATGACATC-A-GCAT
66 TAAGACCATGTCTGGGACATGGCATCGATG--T
* * * *
68186442 TGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
68186507 TAAGACCATGTCTGGGACATGGCATCGATAT
66 TAAGACCATGTCTGGGACATGGCATCGATGT
* * * * * * * *
68186538 TGAGACGAGAGCTAGTGTAAAAGCATGTTTGGGACATGGTATCGGCCTCGACA-TAT--GAGCCA
1 TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGG-C-C-ACATTATGAGAGCCA
*
68186600 GTTTAAGACCATGTCTGGGACATGGCATCGA
63 GTGTAAGACCATGTCTGGGACATGGCATCGA
68186631 CAAATTACCC
Statistics
Matches: 255, Mismatches: 23, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
94 1 0.00
95 1 0.00
96 244 0.96
97 2 0.01
98 4 0.02
99 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAAATCATGTCTAGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGATGT
Done.