Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 203 of 362
Found at i:68554541 original size:81 final size:80
Alignment explanation
Indices: 68554372--68554544 Score: 179
Period size: 81 Copynumber: 2.1 Consensus size: 80
68554362 ATACCTTAGT
* * * *
68554372 TTACCAAATTACTGAAATACCCCCAGTTATAAAATTACTAAAGTACCCCCAGTTTATAAAATTAC
1 TTACAAAATTACCGAAATACCCCAAGTTATAAAATTACTAAAGTACCCCCAGCTTATAAAATTAC
* *
68554437 CAAAATATCCTCGAT
66 CAAAATACCCTCGAA
** * * * *
68554452 TTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTGAAA-TACCCTC-GACTTGTAAAAT
1 TTACAAAATTACCGAAATACCC-CAAGTTATAAAATTACT-AAAGTACCCCCAG-CTTATAAAAT
* *
68554515 TATCAAAGTACCCTCGAA
63 TACCAAAATACCCTCGAA
68554533 TTACAAAATTAC
1 TTACAAAATTAC
68554545 TGTTTTACCC
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
80 19 0.26
81 52 0.70
82 3 0.04
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (80 bp):
TTACAAAATTACCGAAATACCCCAAGTTATAAAATTACTAAAGTACCCCCAGCTTATAAAATTAC
CAAAATACCCTCGAA
Found at i:68554545 original size:54 final size:53
Alignment explanation
Indices: 68554372--68554546 Score: 158
Period size: 54 Copynumber: 3.3 Consensus size: 53
68554362 ATACCTTAGT
* * * * * * *
68554372 TTACCAAATTACTGAAATACCC-CCAGTTATAAAATTACTAAAGTACCCCCAGT
1 TTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACGAAAGTACCCTCA-A
* ** * *
68554425 TTATAAAATTACCAAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTCAA
1 TTACAAAATTACTGAAATACCCTCGACTTGTAAAATTA-CGAAAGTACCCTCAA
**
68554478 TTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATC-AAAGTACCCTCGAA
1 -TTACAAAATTACTGAAATACCCTCGACTTGTAAAATTA-CGAAAGTACCCTC-AA
68554533 TTACAAAATTACTG
1 TTACAAAATTACTG
68554547 TTTTACCCTC
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 20 0.20
54 72 0.73
55 6 0.06
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (53 bp):
TTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACGAAAGTACCCTCAA
Found at i:68554577 original size:27 final size:27
Alignment explanation
Indices: 68554523--68554960 Score: 495
Period size: 27 Copynumber: 16.2 Consensus size: 27
68554513 ATTATCAAAG
*
68554523 TACCCTCGAATTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
68554550 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68554577 TACCCTCGATTGACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * * *
68554604 TACCCTCGATTGAGAGAATTATTTTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
68554631 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68554658 TACCCTCAATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-GTTT
68554685 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
*
68554712 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
68554739 TACCCTCGATTTATAGAATTTCTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68554766 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68554793 TACCTTTGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
68554820 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
68554847 TACCCTAGATTGATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
68554874 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
68554901 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * **
68554928 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
68554955 TACCCT
1 TACCCT
68554961 TAGGATGTTA
Statistics
Matches: 356, Mismatches: 51, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 353 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:68554581 original size:81 final size:81
Alignment explanation
Indices: 68554469--68554960 Score: 490
Period size: 81 Copynumber: 6.1 Consensus size: 81
68554459 ATTACCGAAA
* ** *** * * ***
68554469 TACCCTCAATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTCGAAT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAAT
*
68554534 TACAAAATTACTGTTT
66 TACAAAATTACTATTT
* * * * **
68554550 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTGACAGAATTATTGTTTTACCCTCG-AT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAAT
* * * *
68554614 TGAGAGAATTATTTTTT
66 T-ACAAAATTACTATTT
* * * *
68554631 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAAAATTATCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAAT
*
68554696 TACAAAATTA-TCGTTT
66 TACAAAATTACT-ATTT
* * *
68554712 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTATAGAATT-TCTATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATC-ATTTTACCCTCGAA
*
68554776 TTACAGAATTACTATTT
65 TTACAAAATTACTATTT
* * * * * * * *
68554793 TACCTTTGATTTACAAAATTATTGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTAG-AT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAAT
*
68554857 TGATAAAATTACTATTT
66 T-ACAAAATTACTATTT
* * * *
68554874 TACCCTCGATTTACAAAATTACTATTTTACCCTTGATTTACAAAATTATCGTTTTACCCTC-AAT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAA-
* *
68554938 TTATAAAATTACCATTT
65 TTACAAAATTACTATTT
68554955 TACCCT
1 TACCCT
68554961 TAGGATGTTA
Statistics
Matches: 341, Mismatches: 61, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
80 8 0.02
81 327 0.96
82 6 0.02
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAAAATTATCATTTTACCCTCGAAT
TACAAAATTACTATTT
Found at i:68554910 original size:108 final size:108
Alignment explanation
Indices: 68554523--68554960 Score: 590
Period size: 108 Copynumber: 4.1 Consensus size: 108
68554513 ATTATCAAAG
* * *
68554523 TACCCTCGAATTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* * * * * * * ***
68554588 GACAGAATTATTGTTTTACCCTCGATTGAGAGAATTATTTTTT
66 TACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCGTTT
* * * *
68554631 TACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAAAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACT-ATTTTACCCTCGAT
* *
68554695 TTACAAAATTATCGTTTTACCCTCGATTTATAAAATTACTGTTT
65 TTACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCGTTT
* * * * *
68554739 TACCCTCGATTTATAGAATTTCTATTTTACCCTCGATTTACAGAATTACTATTTTACCTTTGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
68554804 TACAAAATTATTGTTTTACCCTCAATTTATAGAATTACCGTTT
66 TACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCGTTT
* * *
68554847 TACCCTAGATTGATAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
68554912 TACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCATTT
66 TACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCGTTT
68554955 TACCCT
1 TACCCT
68554961 TAGGATGTTA
Statistics
Matches: 297, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
107 1 0.00
108 295 0.99
109 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (108 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTATCGTTTTACCCTCAATTTATAAAATTACCGTTT
Found at i:68555499 original size:6 final size:6
Alignment explanation
Indices: 68555468--68555549 Score: 71
Period size: 6 Copynumber: 13.3 Consensus size: 6
68555458 TTGCATTCAC
* *
68555468 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
68555517 -TCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
68555550 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 4 0.06
6 49 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:68555547 original size:31 final size:31
Alignment explanation
Indices: 68555468--68555540 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
68555458 TTGCATTCAC
* *
68555468 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
68555499 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
68555530 ATTCTGATTCT
1 ATTCTGATTCT
68555541 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:68557121 original size:49 final size:49
Alignment explanation
Indices: 68557063--68557190 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
68557053 ACATCTAAGT
* * *
68557063 CGATGCCATGTCTCAAACAGGTCTTACACTGACT-TCCATATATTGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCT-CATATATCG-GTGC
* * *
68557112 CGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
68557161 CGATGCCATGTCCCAGACAGGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
68557191 AGCACACATA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
48 1 0.01
49 69 0.97
50 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:68557181 original size:98 final size:97
Alignment explanation
Indices: 68557013--68557190 Score: 241
Period size: 98 Copynumber: 1.8 Consensus size: 97
68557003 AGGGTACGAT
* * * *
68557013 GCCGATGCCATGTTCCAAACATGGTCTGACATTGGCTCACACATCTAAGTCGATGCCATGTCTCA
1 GCCGATGCCATGTCCCAAACATGGTCTGACACTGGCTCACACATCGAAGTCGATGCCATGTCCCA
68557078 AACAGGTCTTACACTGACTTCCATATATTGAG
66 AACAGGTCTTACACTGACTTCCATATATTGAG
* * * **
68557110 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTGACACTGGCTCACA-C-ATCGAAGTCGATGCCATGTCC
*
68557174 CAGACAGGTCTTACACT
64 CAAACAGGTCTTACACT
68557191 AGCACACATA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
96 16 0.23
97 20 0.29
98 33 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (97 bp):
GCCGATGCCATGTCCCAAACATGGTCTGACACTGGCTCACACATCGAAGTCGATGCCATGTCCCA
AACAGGTCTTACACTGACTTCCATATATTGAG
Found at i:68559767 original size:13 final size:13
Alignment explanation
Indices: 68559749--68559775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
68559739 TGGGATAGAA
68559749 ATATGTATGAATT
1 ATATGTATGAATT
68559762 ATATGTATGAATT
1 ATATGTATGAATT
68559775 A
1 A
68559776 CGGTTTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (13 bp):
ATATGTATGAATT
Found at i:68575422 original size:39 final size:39
Alignment explanation
Indices: 68575378--68575534 Score: 269
Period size: 39 Copynumber: 4.0 Consensus size: 39
68575368 AATTATATTA
* * *
68575378 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATTCATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68575417 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
68575456 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
68575495 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68575534 C
1 C
68575535 TAGTGTCTTG
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:68581109 original size:39 final size:39
Alignment explanation
Indices: 68581065--68581260 Score: 329
Period size: 39 Copynumber: 5.0 Consensus size: 39
68581055 AATTATATTA
* *
68581065 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
68581104 CCAGCACGAAGCCTACGGGACTTTAGTCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68581143 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
68581182 CCAACACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
68581221 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
68581260 C
1 C
68581261 TAGTGTCTTG
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:68583087 original size:19 final size:19
Alignment explanation
Indices: 68583052--68583089 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68583042 TGCAATTTTA
*
68583052 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
68583071 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
68583090 TCCGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:68585413 original size:40 final size:40
Alignment explanation
Indices: 68585321--68585503 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
68585311 TATTCGAATG
* * *
68585321 ATATCCGGGCTAAGTTCCGAAGGC-TTTTTGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * * *
68585360 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
68585400 ATATCCGGGCTAAGA-CTCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGCGACT
* * *
68585440 ATATCCGGGCTAAG-TCCCAAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
*
68585480 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
68585504 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
39 23 0.19
40 97 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:68592626 original size:40 final size:40
Alignment explanation
Indices: 68592567--68592750 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
68592557 TATTCGAATG
* * * *
68592567 ATATCTGGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGCGACT
* * * *
68592607 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-CGACT
* * *
68592647 ATATCCGGGCTAAGACCCGAAGGCATTTGTTCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGCGACT
* *
68592687 ATATCCGGGCTAAG-TCCCAAAGGCATTTATGCTAGCGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGCGACT
*
68592727 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
68592751 CTTGTGCGAG
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGCGACT
Found at i:68605773 original size:44 final size:42
Alignment explanation
Indices: 68605699--68605794 Score: 97
Period size: 44 Copynumber: 2.2 Consensus size: 42
68605689 GTACGTGATT
* * *
68605699 GTGTAAAACCACATCTAGGACGTTGCCATCGATTTGA-GATTTAC
1 GTGTAAGACCACATCTAGGACATTGCCATCG-TCT-ATGATTT-C
* *
68605743 GTGTAAGACCATATCTGGGACATTAG-CATCGTCTATGATTTC
1 GTGTAAGACCACATCTAGGACATT-GCCATCGTCTATGATTTC
68605785 GTGTAAGACC
1 GTGTAAGACC
68605795 CTGTCTAGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 12 0.27
43 7 0.16
44 25 0.56
45 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACATCTAGGACATTGCCATCGTCTATGATTTC
Found at i:68608152 original size:31 final size:31
Alignment explanation
Indices: 68608114--68608219 Score: 176
Period size: 31 Copynumber: 3.4 Consensus size: 31
68608104 ACGGTTACTG
*
68608114 GGCCGAAGCCTTATCATAAATCATATCTCTA
1 GGCCGAAGCCTTATCATAAATCATATCACTA
*
68608145 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTATCATAAATCATATCACTA
* *
68608176 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTATCATAAATCATATCACTA
68608207 GGCCGAAGCCTTA
1 GGCCGAAGCCTTA
68608220 CTGTAAACGG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (31 bp):
GGCCGAAGCCTTATCATAAATCATATCACTA
Found at i:68609321 original size:27 final size:27
Alignment explanation
Indices: 68609291--68609355 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
68609281 GGGCATATTC
68609291 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
68609318 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
68609345 GTCTTTTTACC
1 GTCATTTTACC
68609356 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:68609429 original size:27 final size:27
Alignment explanation
Indices: 68609399--68609456 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
68609389 GGGTGTTTTG
68609399 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* * ** *
68609426 GTAATTTTGTAAACCAAGGGTATTTCT
1 GTAAATCTACAAACCAAGGGTATTTCA
68609453 GTAA
1 GTAA
68609457 TTTTGTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:68609457 original size:27 final size:27
Alignment explanation
Indices: 68609409--68609542 Score: 135
Period size: 27 Copynumber: 5.0 Consensus size: 27
68609399 GTAAATCTAC
*
68609409 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
68609436 AAACCAAGGGTATTTCTGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * **
68609463 AAATCAGGGGTATTTTGGTAATTTTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
68609490 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
68609517 AAACC-AGTGGTATTTCAGTAATTTTA
1 AAACCAAG-GGTATTTCAGTAATTTTA
68609543 CAAATTAGGG
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.02
27 88 0.98
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:68609474 original size:54 final size:54
Alignment explanation
Indices: 68609407--68609566 Score: 158
Period size: 54 Copynumber: 3.0 Consensus size: 54
68609397 TGGTAAATCT
* * * *
68609407 ACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTGTAATTTT
1 ACAAACCAGGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTC
** * ** ***
68609461 GTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTC
1 ACAAACCAGGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTC
* * ** * *
68609515 ACAAACCAGTGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTGGTAATT
1 ACAAACCAGGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATT
68609567 CTATCCTATA
Statistics
Matches: 84, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
ACAAACCAGGGGTATTTCAGTAATTTTATAAACCAAGGGTATTTCGGTAATTTC
Found at i:68609511 original size:81 final size:81
Alignment explanation
Indices: 68609415--68609599 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
68609405 CTACAAACCA
*** * **
68609415 AGGGTATTTCAGTAATTTTGTAAACCAAG-GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTT
1 AGGGTATTTCAGTAATTTCACAAACC-AGTGGTATTTCAGTAATTTTACAAATCAGGGGTATTTT
68609479 GGTAATTTTATAAATTG
65 GGTAATTTTATAAATTG
* *
68609496 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCAGTAATTTTACAAATTAGGGGTATTTTG
1 AGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTG
* ** *
68609561 GTAATTCTATCCTATAG
66 GTAATTTTAT-AAATTG
*
68609578 -GGGTATTTTAGTAATTTCACAA
1 AGGGTATTTCAGTAATTTCACAA
68609600 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 2 0.02
81 83 0.94
82 3 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTG
GTAATTTTATAAATTG
Found at i:68609555 original size:27 final size:27
Alignment explanation
Indices: 68609406--68609599 Score: 131
Period size: 27 Copynumber: 7.2 Consensus size: 27
68609396 TTGGTAAATC
* *
68609406 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
** * * *
68609433 TGTAAACCAAGGGTATTTCTGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
** **
68609460 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
* * *
68609487 TATAAAT-TGAGGGTATTTCGGTAATTT
1 TACAAATCAG-GGGTATTTCAGTAATTT
* * *
68609514 CACAAACCAGTGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTCAGTAATTT
* ** *
68609541 TACAAATTAGGGGTATTTTGGTAATTC
1 TACAAATCAGGGGTATTTCAGTAATTT
** *
68609568 TATCCTAT-AGGGGTATTTTAGTAATTT
1 TA-CAAATCAGGGGTATTTCAGTAATTT
*
68609595 CACAA
1 TACAA
68609600 TCGAGGGTAA
Statistics
Matches: 134, Mismatches: 30, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 128 0.96
28 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAATCAGGGGTATTTCAGTAATTT
Found at i:68609673 original size:54 final size:53
Alignment explanation
Indices: 68609598--68609768 Score: 236
Period size: 54 Copynumber: 3.2 Consensus size: 53
68609588 GTAATTTCAC
68609598 AATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACG-TAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
* *
68609652 AATCAAGGGTAAAACAGTAATTTTGTAAA-TCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAAC-GTAATTTTGTAAACT-GAGGGTAAAATGGTAATTTTATA
* * * *
68609706 AATTGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAA-CGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
*
68609760 AATTGAGGG
1 AATCGAGGG
68609769 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.01
54 102 0.97
55 2 0.02
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (53 bp):
AATCGAGGGTAAAACGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATA
Found at i:68609766 original size:27 final size:27
Alignment explanation
Indices: 68609602--68609768 Score: 199
Period size: 27 Copynumber: 6.2 Consensus size: 27
68609592 TTTCACAATC
* * * *
68609602 GAGGGTAAAACGATAATTTTGTAAACT
1 GAGGGTAAAATGGTAATTTTATAAATT
*
68609629 GAGGGTAAAATGGTAATTTTATAAATC
1 GAGGGTAAAATGGTAATTTTATAAATT
* ** * *
68609656 AAGGGTAAAACAGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTTTATAAATT
*
68609683 AAGGGTAAAATGGTAATTTTATAAATT
1 GAGGGTAAAATGGTAATTTTATAAATT
* *
68609710 GAGGGTAAAATGGTAATTTTGTAAACT
1 GAGGGTAAAATGGTAATTTTATAAATT
* *
68609737 GAGGGTAAAATGGTAATTCTACAAATT
1 GAGGGTAAAATGGTAATTTTATAAATT
68609764 GAGGG
1 GAGGG
68609769 CATTTCAGTA
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTTTATAAATT
Found at i:68609780 original size:54 final size:54
Alignment explanation
Indices: 68609615--68609787 Score: 208
Period size: 54 Copynumber: 3.2 Consensus size: 54
68609605 GGTAAAACGA
**
68609615 TAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCAAGGGTAAAA-CAG
1 TAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATTGAGGG-AAAATCAG
* *
68609669 TAATTTTGTAAA-TCAAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAAT-GG
1 TAATTTTGTAAACT-GAGGGTAAAATGGTAATTTTATAAATTGAGGG-AAAATCAG
* * * **
68609723 TAATTTTGTAAACTGAGGGTAAAATGGTAATTCTACAAATTGAGGGCATTTCAG
1 TAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATTGAGGGAAAATCAG
*
68609777 TAATTTGGTAA
1 TAATTTTGTAA
68609788 GCTAAAGTAT
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
53 3 0.03
54 99 0.96
55 1 0.01
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (54 bp):
TAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATTGAGGGAAAATCAG
Found at i:68639853 original size:20 final size:20
Alignment explanation
Indices: 68639825--68639864 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68639815 ACCCATGATC
*
68639825 TTTGAATTGACAATCTAGCG
1 TTTGAATTGAAAATCTAGCG
*
68639845 TTTGCATTGAAAATCTAGCG
1 TTTGAATTGAAAATCTAGCG
68639865 GCATTACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
TTTGAATTGAAAATCTAGCG
Found at i:68641998 original size:28 final size:27
Alignment explanation
Indices: 68641918--68642005 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
68641908 CAGCATGGTT
* * * *
68641918 ACCAG-AACAGATATAGTGACAGAGTC
1 ACCAGAAACAGATATTGTGGCAAAGCC
*
68641944 ACCAGATACAGATATTGTGGCAAAGCC
1 ACCAGAAACAGATATTGTGGCAAAGCC
* * *
68641971 ACTAGAAACAGATATTTGTGGTAGAGCC
1 ACCAGAAACAGATA-TTGTGGCAAAGCC
68641999 ACCAGAA
1 ACCAGAA
68642006 CGCTTCCTCC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.10
27 28 0.56
28 17 0.34
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (27 bp):
ACCAGAAACAGATATTGTGGCAAAGCC
Found at i:68642139 original size:26 final size:27
Alignment explanation
Indices: 68642110--68642171 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
68642100 AAATTAACCC
*
68642110 TAGGGGTATAATTGTAATTTT-ACACT
1 TAGGGGTATAATGGTAATTTTCACACT
*
68642136 TAGGGGTATAATGGTAATTTTCATACT
1 TAGGGGTATAATGGTAATTTTCACACT
68642163 TAGGGGTAT
1 TAGGGGTAT
68642172 TTTAGTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.40
Consensus pattern (27 bp):
TAGGGGTATAATGGTAATTTTCACACT
Found at i:68643897 original size:15 final size:15
Alignment explanation
Indices: 68643877--68643905 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
68643867 CTAAACATAC
68643877 AAAATAATAATAATA
1 AAAATAATAATAATA
68643892 AAAATAATAATAAT
1 AAAATAATAATAAT
68643906 GATAACATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATAATAATA
Found at i:68645912 original size:27 final size:28
Alignment explanation
Indices: 68645877--68645944 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
68645867 TATTGTGAAT
*
68645877 AGAGTCACCA-AATACAAATA-TTGTGGC
1 AGAGCCACCAGAA-ACAAATATTTGTGGC
* *
68645904 AGAGCCACCAGAAATAGATATTTGTGGC
1 AGAGCCACCAGAAACAAATATTTGTGGC
68645932 AGAGCCACCAGAA
1 AGAGCCACCAGAA
68645945 CGCTTCCTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 14 0.39
28 22 0.61
ACGTcount: A:0.40, C:0.21, G:0.22, T:0.18
Consensus pattern (28 bp):
AGAGCCACCAGAAACAAATATTTGTGGC
Found at i:68650049 original size:8 final size:8
Alignment explanation
Indices: 68650036--68650060 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68650026 TGCATCTATC
68650036 AGGATTCA
1 AGGATTCA
68650044 AGGATTCA
1 AGGATTCA
68650052 AGGATTCA
1 AGGATTCA
68650060 A
1 A
68650061 CGGACATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (8 bp):
AGGATTCA
Found at i:68650107 original size:19 final size:20
Alignment explanation
Indices: 68650063--68650107 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
68650053 GGATTCAACG
68650063 GACAT-AAAACTCTTGATAT
1 GACATGAAAACTCTTGATAT
*
68650082 GGCATGAAAA-TCTTGATAT
1 GACATGAAAACTCTTGATAT
*
68650101 GATATGA
1 GACATGA
68650108 TAATGACTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (20 bp):
GACATGAAAACTCTTGATAT
Found at i:68661996 original size:27 final size:26
Alignment explanation
Indices: 68661965--68662035 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 26
68661955 AATCTCATAT
*
68661965 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGG-TAGAATTACTGAAATACCC
* *
68661992 TTGTAGAGTAGAATTACTGAAATGCCC
1 CTGTAG-GTAGAATTACTGAAATACCC
68662019 CTGTAGGGTAGAATTAC
1 CTGTA-GGTAGAATTAC
68662036 CAAAACACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (26 bp):
CTGTAGGTAGAATTACTGAAATACCC
Found at i:68662063 original size:27 final size:27
Alignment explanation
Indices: 68662030--68662207 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
68662020 TGTAGGGTAG
* * * *
68662030 AATTACCAAAACACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
68662057 AAATACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
68662084 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
68662111 AATTACCAAAATACCTCTAATTTTTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * **
68662138 AATTACTGAAATA-CCCTCGACCTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* * *
68662165 AATTACTAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
68662192 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
68662208 TTCATTTACA
Statistics
Matches: 126, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.02
27 121 0.96
28 2 0.02
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:68662074 original size:54 final size:54
Alignment explanation
Indices: 68662011--68662125 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
68662001 AGAATTACTG
* * * *
68662011 AAATGCCCCT-GTAGGGTAGAATTACCAAAACACCCTTGGTTTATAAAAATACCA
1 AAATACCCCTAGT-GGGTAAAATTACCAAAACACCCCTAGTTTATAAAAATACCA
** * * *
68662065 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTGGGTAAAATTACCAAAACACCCCTAGTTTATAAAAATACCA
68662119 AAATACC
1 AAATACC
68662126 TCTAATTTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.26
Consensus pattern (54 bp):
AAATACCCCTAGTGGGTAAAATTACCAAAACACCCCTAGTTTATAAAAATACCA
Found at i:68662222 original size:27 final size:27
Alignment explanation
Indices: 68662165--68662278 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 27
68662155 CGACCTGTAA
* *
68662165 AATTACTAAAATACCCTCGACTTGTA-A-
1 AATTACCAAAGTACCCTCGA-TT-TACAG
68662192 AATTACCAAAGTACCCTTC-ATTTACAG
1 AATTACCAAAGTACCC-TCGATTTACAG
***
68662219 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
***** *
68662246 AATTACTGTTTTACCCTCGATTTACAA
1 AATTACCAAAGTACCCTCGATTTACAG
68662273 AATTAC
1 AATTAC
68662279 TGTTTTACCC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
25 2 0.03
26 5 0.07
27 66 0.88
28 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:68662261 original size:81 final size:81
Alignment explanation
Indices: 68662176--68662359 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 81
68662166 ATTACTAAAA
* * *
68662176 TACCCTCGACTTGTAAAATTACCAAAGTACCCTTCATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAGTACCCTTCATTTACAAAATTACCATTTTACCCTCGATT
*
68662241 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* ***** * * **
68662257 TACCCTCGATTTACAAAATTACTGTTTTACCCTTGATTTGCAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCAAAGTACCCTTCATTTACAAAATTACCATTTTACCCTCGATT
*
68662322 TATAGAATTACCGTTT
66 TACAGAATTACCGTTT
68662338 TACCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAAAATTAC
68662360 TGTGACACCC
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCAAAGTACCCTTCATTTACAAAATTACCATTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:68662360 original size:81 final size:81
Alignment explanation
Indices: 68662203--68662362 Score: 248
Period size: 81 Copynumber: 2.0 Consensus size: 81
68662193 ATTACCAAAG
* *
68662203 TACCCTTCATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTTCATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
68662268 TACAAAATTACTGTTT
66 TACAAAATTACTGTTT
* * ** *
68662284 TACCCTTGATTTGCAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTTCATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
*
68662349 TATAAAATTACTGT
66 TACAAAATTACTGT
68662363 GACACCCCTA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTTCATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTACTGTTT
Found at i:68662369 original size:27 final size:27
Alignment explanation
Indices: 68662203--68662362 Score: 214
Period size: 27 Copynumber: 5.9 Consensus size: 27
68662193 ATTACCAAAG
* **
68662203 TACCCTTC-ATTTACAGAATTACCATTT
1 TACCC-TCGATTTACAAAATTACTGTTT
*
68662230 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
68662257 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
68662284 TACCCTTGATTTGCAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
68662311 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
68662338 TACCCTCGATTTATAAAATTACTGT
1 TACCCTCGATTTACAAAATTACTGT
68662363 GACACCCCTA
Statistics
Matches: 120, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 2 0.02
27 118 0.98
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:68665260 original size:47 final size:47
Alignment explanation
Indices: 68665206--68665443 Score: 309
Period size: 47 Copynumber: 5.1 Consensus size: 47
68665196 TTAGGATTTT
** *
68665206 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAAATGGCCA
* * *
68665253 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAAATGGCCA
* * *
68665300 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAAATGGCCA
*
68665347 ATGTGATGAATGTGAACATGCATATATGTGATAAGG-CAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCA-AATGGCCA
* * * * *
68665394 ATGTGATGAATGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAGGCCAAATGGCCA
68665441 ATG
1 ATG
68665444 CGAAATGTGT
Statistics
Matches: 170, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 165 0.97
48 4 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCAAATGGCCA
Found at i:68665400 original size:22 final size:22
Alignment explanation
Indices: 68665325--68665400 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68665315 ACATGCATAT
*
68665325 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
68665347 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
68665371 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
68665394 ATGTGAT
1 ATGTGAT
68665401 GAATGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:68665422 original size:94 final size:94
Alignment explanation
Indices: 68665206--68665443 Score: 343
Period size: 94 Copynumber: 2.5 Consensus size: 94
68665196 TTAGGATTTT
* * *
68665206 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
68665271 TGTATATGTGTGATAAGGCCGAATGACCA
66 TGCATATATGTGATAAGGCAGAATGACCA
* * *
68665300 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
68665365 TGCATATATGTGATAAGGCAGAATGGCCA
66 TGCATATATGTGATAAGGCAGAATGACCA
* * *
68665394 ATGTGATGAATGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTAATG
1 ATGTGATGAATGT-GAACGTGTATATATGTGATAAGGCCGAATGGCCAATG
68665444 CGAAATGTGT
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 124 0.98
95 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCATATATGTGATAAGGCAGAATGACCA
Found at i:68665473 original size:46 final size:46
Alignment explanation
Indices: 68665417--68665553 Score: 195
Period size: 46 Copynumber: 3.0 Consensus size: 46
68665407 GGAAGTGTAT
*
68665417 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
68665463 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
68665509 ATAT-ATGGTAAAGCCAAATGGCTAATGTGAGATATGGATGAGATG
1 ATATGA-GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
68665554 TGTATATGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.01
46 81 0.99
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:68667332 original size:40 final size:40
Alignment explanation
Indices: 68667057--68667321 Score: 413
Period size: 40 Copynumber: 6.6 Consensus size: 40
68667047 GTTATATATG
*
68667057 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
68667097 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTTGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
68667137 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
68667177 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * *
68667217 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * * * *
68667257 ATCAGGGTTAAGTCCCAAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
68667297 ATCCGGGCTAAGTCCCAAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCAT
68667322 TCACGCTGGT
Statistics
Matches: 209, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
Found at i:68667546 original size:25 final size:25
Alignment explanation
Indices: 68667496--68667548 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
68667486 TGTGTAACAA
* *
68667496 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
68667521 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
68667546 CAA
1 CAA
68667549 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:68671320 original size:47 final size:47
Alignment explanation
Indices: 68671266--68671597 Score: 477
Period size: 47 Copynumber: 7.1 Consensus size: 47
68671256 TTAGGATTTT
** * *
68671266 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68671313 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68671360 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68671407 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68671454 ATGTGATGAACGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68671501 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
68671548 ATGTGATGAACGTGGAA-GTGTATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
68671595 ATG
1 ATG
68671598 CGAAATGTGT
Statistics
Matches: 259, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
47 256 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68671366 original size:22 final size:21
Alignment explanation
Indices: 68671339--68671507 Score: 58
Period size: 22 Copynumber: 7.3 Consensus size: 21
68671329 CATGTATATG
68671339 TGTGATAAGGCCGAATGACCAA
1 TGTGATAAGGCCGAATG-CCAA
* * *
68671361 TGTGATGAACG-TGAACATGCATATA
1 TGTGAT-AAGGCCG-A-ATGC-CA-A
68671386 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAAT-GCCAA
* *
68671408 TGTGATGAATG-TGAACATG-CATA
1 TGTGAT-AAGGCCG-A-ATGCCA-A
68671431 TGTGTGATAAGGCCGAATGACCAA
1 --TGTGATAAGGCCGAATG-CCAA
* * *
68671455 TGTGATGAACG-TGAACATGCATATA
1 TGTGAT-AAGGCCG-A-ATGC-CA-A
68671480 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAAT-GCCAA
68671502 TGTGAT
1 TGTGAT
68671508 GAATGTGAAC
Statistics
Matches: 108, Mismatches: 16, Indels: 46
0.64 0.09 0.27
Matches are distributed among these distances:
22 31 0.29
23 25 0.23
24 27 0.25
25 25 0.23
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (21 bp):
TGTGATAAGGCCGAATGCCAA
Found at i:68671554 original size:22 final size:22
Alignment explanation
Indices: 68671479--68671554 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68671469 ACATGCATAT
*
68671479 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
68671501 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
68671525 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
68671548 ATGTGAT
1 ATGTGAT
68671555 GAACGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:68671629 original size:46 final size:46
Alignment explanation
Indices: 68671577--68671707 Score: 199
Period size: 46 Copynumber: 2.8 Consensus size: 46
68671567 GTATATATAT
68671577 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* * *
68671623 GGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGGATATGT
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
* * * *
68671669 GGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
68671708 TGTATATGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.24
Consensus pattern (46 bp):
GGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGA
Found at i:68673298 original size:6 final size:6
Alignment explanation
Indices: 68673267--68673354 Score: 83
Period size: 6 Copynumber: 14.3 Consensus size: 6
68673257 TTGCATTCAC
* *
68673267 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
68673316 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
68673355 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:68673302 original size:31 final size:31
Alignment explanation
Indices: 68673267--68673345 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
68673257 TTGCATTCAC
* *
68673267 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
68673298 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
68673329 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
68673346 AGTTCTGATA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:68682785 original size:46 final size:46
Alignment explanation
Indices: 68682732--68682906 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
68682722 ATTTGGGCAC
68682732 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * *
68682778 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--T
* * ***
68682825 CCGAGCTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAACAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
* * *
68682871 CCGAGCTCATTGAGTTGAGTCCGAGTTCTCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68682907 GTGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.58
47 27 0.25
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
Found at i:68682896 original size:93 final size:93
Alignment explanation
Indices: 68682727--68682898 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
68682717 GGGATATTTG
* *** *
68682727 GGCACCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAACACCCGAACTCATTGAG
68682792 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
68682820 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAACACCCGAACTCATTGAG
68682885 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
68682899 TCTTATGGGT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCACCCGAACTCGTTGAGTTGAGTCCGAGTCCACTTATGGATGCGAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:68685428 original size:23 final size:23
Alignment explanation
Indices: 68685384--68685428 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
68685374 ACTCAAATGG
* *
68685384 CCAAAATGATCATCAACTTATAA
1 CCAAAATGACCATCAACCTATAA
68685407 CCAAAATGACCAT-AATCCTATA
1 CCAAAATGACCATCAA-CCTATA
68685429 CATACCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.24
Consensus pattern (23 bp):
CCAAAATGACCATCAACCTATAA
Found at i:68690870 original size:9 final size:9
Alignment explanation
Indices: 68690856--68690883 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
68690846 TGCTCCAACT
68690856 GAGTTGAAA
1 GAGTTGAAA
68690865 GAGTTGAAA
1 GAGTTGAAA
68690874 GAGTTGAAA
1 GAGTTGAAA
68690883 G
1 G
68690884 CCTAGTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (9 bp):
GAGTTGAAA
Found at i:68695206 original size:46 final size:46
Alignment explanation
Indices: 68695154--68695281 Score: 202
Period size: 46 Copynumber: 2.8 Consensus size: 46
68695144 GGTTGAGCAT
* *
68695154 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
68695200 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* *
68695246 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68695282 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:68698136 original size:22 final size:23
Alignment explanation
Indices: 68698111--68698160 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
68698101 GTGCCTTTTG
*
68698111 AGGGCTTAT-GTACATG-TGCAAA
1 AGGGATTATAGTACATGTTG-AAA
68698133 AGGGATTATAGGTACATGTTGAAA
1 AGGGATTATA-GTACATGTTGAAA
68698157 AGGG
1 AGGG
68698161 TGAGAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.33
24 14 0.58
25 2 0.08
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (23 bp):
AGGGATTATAGTACATGTTGAAA
Found at i:68703155 original size:6 final size:6
Alignment explanation
Indices: 68703101--68703231 Score: 72
Period size: 6 Copynumber: 21.3 Consensus size: 6
68703091 AAGAAACATC
* * * * *
68703101 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATCAGG ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
68703150 ATCAGA ATCAGA ATCACA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* *
68703199 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
68703232 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 21, Indels: 22
0.68 0.15 0.16
Matches are distributed among these distances:
5 5 0.05
6 76 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:68703157 original size:31 final size:31
Alignment explanation
Indices: 68703122--68703231 Score: 118
Period size: 31 Copynumber: 3.5 Consensus size: 31
68703112 AATCAAAATG
*
68703122 AGAATCAAAATCAGGATCAGGTGACAGAATC
1 AGAATCAAAATCAGAATCAGGTGACAGAATC
* * * *
68703153 AGAATCAGAATCACAATTAGGTGACAGAATT
1 AGAATCAAAATCAGAATCAGGTGACAGAATC
*
68703184 AGAATCAGAATCAGAATCA-GT-ATCAGGTAA-C
1 AGAATCAAAATCAGAATCAGGTGA-CA-G-AATC
68703215 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
68703232 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.01
30 4 0.06
31 60 0.90
32 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGGTGACAGAATC
Found at i:68703163 original size:37 final size:35
Alignment explanation
Indices: 68703110--68703231 Score: 126
Period size: 37 Copynumber: 3.5 Consensus size: 35
68703100 CATCAGAACT
*
68703110 AGAATCAAAATGAGAATCAAAATCAGGATCAGGTGAC
1 AGAATCAAAATCAGAATC-AAATCA-GATCAGGTGAC
* *
68703147 AGAATCAGAATCAGAATC--A-CA-ATTAGGTGAC
1 AGAATCAAAATCAGAATCAAATCAGATCAGGTGAC
* * *
68703178 AGAATTAGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCA-AATCAG-ATCAGGTGAC
68703215 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
68703232 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
31 26 0.37
33 2 0.03
34 2 0.03
35 2 0.03
37 39 0.55
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (35 bp):
AGAATCAAAATCAGAATCAAATCAGATCAGGTGAC
Found at i:68703771 original size:27 final size:27
Alignment explanation
Indices: 68703741--68704203 Score: 577
Period size: 27 Copynumber: 17.2 Consensus size: 27
68703731 AACACCCTAG
* * * *
68703741 GGGTAAAATGGTAATTTTATAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
** *
68703768 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
68703795 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
68703822 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
68703849 TGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
68703876 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
68703903 GGGTAAAACAGTAATTCTATAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * **
68703930 GGGT-AAATAGTAATTTTGCAAATTAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
68703956 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
68703983 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
68704010 GGGTAAAACAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
68704037 GGGTAAAATAGTAATTCTGTAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
68704064 GGGTAAAATAGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
** *
68704091 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
** *
68704118 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
68704145 GGGTAAAACAATAATTCTGTATATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
68704172 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
68704199 GGGTA
1 GGGTA
68704204 CTTTGATAAT
Statistics
Matches: 389, Mismatches: 46, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
26 21 0.05
27 368 0.95
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTGTAAATCGA
Found at i:68704238 original size:54 final size:53
Alignment explanation
Indices: 68704180--68704349 Score: 173
Period size: 54 Copynumber: 3.2 Consensus size: 53
68704170 AAGGGTAAAA
* * * *
68704180 TAGTAATTTTGTAATTCGAGGGTACTTTGATAATTTTACAAGTCAAGGGTATTT
1 TAGTAATTTTATAA-TCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTT
* * *
68704234 TAGTAATTTTACAAACTGAGGGTA-TTTCGGTAATTTTACAAATCGAGGATATTT
1 TAGTAATTTTATAATC-GAGGGTACTTT-GGTAATTTTACAAATCGAGGGTATTT
** * * *
68704288 GGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTT
1 TAGTAATTTTAT-AATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTT
*
68704341 CAGTAATTT
1 TAGTAATTT
68704350 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
53 19 0.20
54 70 0.74
55 6 0.06
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
TAGTAATTTTATAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTT
Found at i:68704267 original size:81 final size:80
Alignment explanation
Indices: 68704181--68704355 Score: 199
Period size: 81 Copynumber: 2.2 Consensus size: 80
68704171 AGGGTAAAAT
* * * *
68704181 AGTAATTTTGTAATTCGAGGGTACTTT-GATAATTTTACAAGTCAAGGGTATTTTAGTAATTTTA
1 AGTAATTTTGTAAATCGAGGATA-TTTGGATAATTTTACAAATCAAGGGTACTTTAGTAATTTTA
68704245 CAAACTGAGGGTATTTC
65 C-AACTGAGGGTATTTC
* ** * * ** *
68704262 GGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTAC
1 AGTAATTTTGTAAATCGAGGATATTTGGATAATTTTACAAATCAAGGGTACTTTAGTAATTTTAC
*
68704327 AACTGGGGGTATTTC
66 AACTGAGGGTATTTC
*
68704342 AGTAATTTGGTAAA
1 AGTAATTTTGTAAA
68704356 CTAAAGTATT
Statistics
Matches: 76, Mismatches: 17, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
80 27 0.36
81 49 0.64
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (80 bp):
AGTAATTTTGTAAATCGAGGATATTTGGATAATTTTACAAATCAAGGGTACTTTAGTAATTTTAC
AACTGAGGGTATTTC
Found at i:68704346 original size:26 final size:27
Alignment explanation
Indices: 68704195--68704349 Score: 147
Period size: 27 Copynumber: 5.8 Consensus size: 27
68704185 ATTTTGTAAT
* *
68704195 TCGAGGGTACTTT-GATAATTTTACAAG
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* **
68704222 TCAAGGGTATTTTAGTAATTTTACAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
68704249 -CTGAGGGTATTTCGGTAATTTTACAAA
1 TC-GAGGGTATTTCGGTAATTTTACAAA
* * *
68704276 TCGAGGATATTTGGGTAATTTTATAAA
1 TCGAGGGTATTTCGGTAATTTTACAAA
* *
68704303 TCGGGGGTACTTT-GGTAATTTTACAAC
1 TCGAGGGTA-TTTCGGTAATTTTACAAA
* *
68704330 T-GGGGGTATTTCAGTAATTT
1 TCGAGGGTATTTCGGTAATTT
68704350 GGTAAACTAA
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.03
26 18 0.17
27 83 0.77
28 4 0.04
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (27 bp):
TCGAGGGTATTTCGGTAATTTTACAAA
Found at i:68712105 original size:19 final size:18
Alignment explanation
Indices: 68712078--68712117 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
68712068 TAAATAGTTA
68712078 ATTAAATTATTTAATTTAT
1 ATTAAATTATTTAA-TTAT
*
68712097 ATTATATTATTTAATTAT
1 ATTAAATTATTTAATTAT
68712115 ATT
1 ATT
68712118 GTATATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTAAATTATTTAATTAT
Found at i:68712135 original size:18 final size:18
Alignment explanation
Indices: 68712083--68712136 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
68712073 AGTTAATTAA
*
68712083 ATTATTTAATTTATATTAT
1 ATTATTGAATTTAT-TTAT
*
68712102 ATTATTTAATTATATTGTAT
1 ATTATTGAATT-TATT-TAT
68712122 ATT-TTGAATTTATTT
1 ATTATTGAATTTATTT
68712137 TGAAATTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.03
18 4 0.12
19 18 0.56
20 9 0.28
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (18 bp):
ATTATTGAATTTATTTAT
Found at i:68714306 original size:34 final size:34
Alignment explanation
Indices: 68714235--68714307 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
68714225 GCATTTCTGT
* **
68714235 TACTATTACTGAAATGGGCTAAGGCCCACACTGA
1 TACTGTTACTGAAATGGGCTAAGGCCCACACCAA
*
68714269 TACTGTTACTGTAATGGGCTAAGGCCCTA-ACCAA
1 TACTGTTACTGAAATGGGCTAAGGCCC-ACACCAA
68714303 TACTG
1 TACTG
68714308 GACTGTTACT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAGGCCCACACCAA
Found at i:68714928 original size:6 final size:6
Alignment explanation
Indices: 68714917--68714943 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
68714907 CAGTTAATAT
68714917 ACAGAA ACAGAA ACAGAA ACAGAA ACA
1 ACAGAA ACAGAA ACAGAA ACAGAA ACA
68714944 ATCTGGGCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.19, G:0.15, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:68724850 original size:23 final size:24
Alignment explanation
Indices: 68724815--68724882 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 24
68724805 GCTCCTCTTG
* **
68724815 AGCTGATGGATAGTAAGCTCTATTA
1 AGCTGA-GAATAGTAAGCTCTAACA
*
68724840 AGCTGA-AATAGTAAGCTCTAACG
1 AGCTGAGAATAGTAAGCTCTAACA
*
68724863 AGCTGAGAACAGTAAGCTCT
1 AGCTGAGAATAGTAAGCTCT
68724883 TACGAGTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
23 19 0.51
24 12 0.32
25 6 0.16
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (24 bp):
AGCTGAGAATAGTAAGCTCTAACA
Found at i:68724881 original size:24 final size:24
Alignment explanation
Indices: 68724826--68724919 Score: 84
Period size: 24 Copynumber: 3.9 Consensus size: 24
68724816 GCTGATGGAT
*** *
68724826 AGTAAGCTCTATTAAGCTGA-AAT
1 AGTAAGCTCTAACGAGCTGAGAAC
68724849 AGTAAGCTCTAACGAGCTGAGAAC
1 AGTAAGCTCTAACGAGCTGAGAAC
* * *
68724873 AGTAAGCTCTTACGAGTTGATATATC
1 AGTAAGCTCTAACGAGCTGAGA-A-C
68724899 AGTAAGCT-TATACGAGCTGAG
1 AGTAAGCTCTA-ACGAGCTGAG
68724920 GTGAGTTCGC
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
23 17 0.30
24 21 0.37
25 2 0.04
26 17 0.30
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (24 bp):
AGTAAGCTCTAACGAGCTGAGAAC
Found at i:68728018 original size:47 final size:47
Alignment explanation
Indices: 68727966--68728096 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
68727956 TACAATCGAT
* *
68727966 AAGTACATATACCAT-GCACCGTAGCCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGC-CCGTAGCCAAATCAAGGTAACTCATCCCG
* * * * *
68728013 GAGTACCTATACTATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* *
68728060 AAATACCTATACCATGGCCTGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
68728097 TTATTCGCAC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
47 70 0.97
48 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
Found at i:68730951 original size:29 final size:29
Alignment explanation
Indices: 68730917--68730990 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
68730907 TAATCAACCG
*
68730917 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
68730946 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
68730975 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
68730991 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:68739096 original size:29 final size:29
Alignment explanation
Indices: 68739062--68739135 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
68739052 TAATCAACCG
*
68739062 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
68739091 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
68739120 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
68739136 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:68742396 original size:44 final size:43
Alignment explanation
Indices: 68742321--68742425 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 43
68742311 CTTAAGGAAC
* *
68742321 TCGCACACTTAGTGCCAAAATGATTAGCCAAAGCTA-TAAAGATA
1 TCGCACACTTAGTGCCAAAACGATTAACCAAAGCTACT-AA-ATA
** * *
68742365 TCGCACACTTAGTGCCATCACG-TTAAACCAAAGTTACCTCAATA
1 TCGCACACTTAGTGCCAAAACGATT-AACCAAAGCTA-CTAAATA
68742409 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
68742426 CATAGAGCCG
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
43 2 0.04
44 48 0.92
45 1 0.02
46 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAAAACGATTAACCAAAGCTACTAAATA
Found at i:68745797 original size:43 final size:43
Alignment explanation
Indices: 68745708--68745819 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
68745698 TCCGAACTTG
* * * *
68745708 TTGAGTGGTCCGAGTTCATG-GGGTATG-GAGCATCCGAGCTCG
1 TTGAGAGGTCCAAGTTCATGATGG-ATGTGAGCATCCGAGCTCA
* *
68745750 TTGAGAGGTCCAAGTTCATTATGGATGTGAGCATCTGAGCTCA
1 TTGAGAGGTCCAAGTTCATGATGGATGTGAGCATCCGAGCTCA
*
68745793 TTGAGAGGTCCGAGTTCATGATGGATG
1 TTGAGAGGTCCAAGTTCATGATGGATG
68745820 CGATTCATGT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 20 0.33
43 40 0.67
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (43 bp):
TTGAGAGGTCCAAGTTCATGATGGATGTGAGCATCCGAGCTCA
Found at i:68761355 original size:40 final size:40
Alignment explanation
Indices: 68761272--68761534 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68761262 TTGAATGCTG
* * * * * *
68761272 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68761312 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68761352 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68761392 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
68761432 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68761472 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68761511 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68761535 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68761554 original size:79 final size:80
Alignment explanation
Indices: 68761311--68761569 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
68761301 AAGTGAATAT
* * * * * * *
68761311 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
68761375 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
68761391 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
68761456 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
68761471 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
68761535 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
68761550 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
68761570 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:68769290 original size:40 final size:40
Alignment explanation
Indices: 68769207--68769469 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
68769197 TTGAATGCTG
* * * * * *
68769207 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
68769247 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
68769287 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
68769327 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
68769367 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68769407 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
68769446 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
68769470 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:68769489 original size:79 final size:80
Alignment explanation
Indices: 68769246--68769504 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
68769236 AAGTGAATAT
* * * * * * *
68769246 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
68769310 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
68769326 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
68769391 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
68769406 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
68769470 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
68769485 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
68769505 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:68776718 original size:50 final size:50
Alignment explanation
Indices: 68776603--68776883 Score: 210
Period size: 50 Copynumber: 5.6 Consensus size: 50
68776593 CTGGTACGCA
* * * * *
68776603 TAGTAGCCTACACTTAGTATTACACATGCGACC-AACAAT-TCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GATACATG
* *
68776652 TAGTAGTCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACATG
* * *** * * * *
68776702 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGATACATG
* * *
68776753 TAGTAGCCTGCACTTAGTACTAAACATGCGACCTAACTATCT-AGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGA-TACATG
* * * * * * * * **
68776803 TAATAACTTGCACTTAGTACTACACACGTAACCTAAAATCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGATACATG
*
68776855 TAGTAGCCTGCACATAGTACTACACATGT
1 TAGTAGCCTGCACTTAGTACTACACATGT
68776884 TTTCTCACAA
Statistics
Matches: 178, Mismatches: 45, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
49 30 0.17
50 76 0.43
51 37 0.21
52 34 0.19
53 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACATG
Found at i:68779756 original size:20 final size:20
Alignment explanation
Indices: 68779727--68779770 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
68779717 CAATTCATTC
*
68779727 TCATTCATATAATCAACAAT
1 TCATTCATATAACCAACAAT
* *
68779747 TCATTTATATAACCAAGAAT
1 TCATTCATATAACCAACAAT
68779767 TCAT
1 TCAT
68779771 CCGTATAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.36
Consensus pattern (20 bp):
TCATTCATATAACCAACAAT
Found at i:68779971 original size:24 final size:26
Alignment explanation
Indices: 68779941--68780000 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
68779931 ATAAACTCGA
*
68779941 ACGAGCTGAGA-ATA-GTAAGCTCTT
1 ACGAGCTGAGATATAGGTAAGCTCAT
*
68779965 ACGAGCTGATATATAGGTAAGCTCAT
1 ACGAGCTGAGATATAGGTAAGCTCAT
68779991 ACGAGCTGAG
1 ACGAGCTGAG
68780001 GAGAGTCTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 10 0.32
25 3 0.10
26 18 0.58
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (26 bp):
ACGAGCTGAGATATAGGTAAGCTCAT
Found at i:68796435 original size:40 final size:40
Alignment explanation
Indices: 68796380--68796542 Score: 256
Period size: 40 Copynumber: 4.1 Consensus size: 40
68796370 GGATGATAAT
68796380 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
68796420 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
68796460 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
68796500 CGGGCTATGTCCCGAAGGTATTTGAGCAAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
68796540 CGG
1 CGG
68796543 TTAAATCCCA
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 112 0.98
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:68804618 original size:80 final size:80
Alignment explanation
Indices: 68804463--68804623 Score: 243
Period size: 80 Copynumber: 2.0 Consensus size: 80
68804453 ATGATAATCG
* * * *
68804463 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
1 GGCTAACTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGC
*
68804528 GAGTTACTATATCCA
66 AAGTTACTATATCCA
* *
68804543 GGCTAACTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCTAAGGCATTCGAGC
1 GGCTAACTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGC
68804608 AAG-TAGCTATATCCA
66 AAGTTA-CTATATCCA
68804623 G
1 G
68804624 TTAAATCCCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 2 0.03
80 71 0.97
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (80 bp):
GGCTAACTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTCGAGC
AAGTTACTATATCCA
Found at i:68804621 original size:40 final size:40
Alignment explanation
Indices: 68804461--68804602 Score: 230
Period size: 40 Copynumber: 3.5 Consensus size: 40
68804451 GGATGATAAT
68804461 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
68804501 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
68804541 CAGGCTAACTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
68804581 CGGGCTATGTCCCTAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
68804603 CGAGCAAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:68815611 original size:13 final size:13
Alignment explanation
Indices: 68815593--68815617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68815583 AACGAAGCAG
68815593 GACACGGCCGTGC
1 GACACGGCCGTGC
68815606 GACACGGCCGTG
1 GACACGGCCGTG
68815618 TGCACCAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:68839221 original size:17 final size:19
Alignment explanation
Indices: 68839179--68839222 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
68839169 ATGAAAAGTT
*
68839179 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
68839198 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
68839216 AA-TATTA
1 AATTATTA
68839223 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:68840340 original size:52 final size:56
Alignment explanation
Indices: 68840244--68840351 Score: 134
Period size: 57 Copynumber: 2.0 Consensus size: 56
68840234 TCTTCTTCTA
* *
68840244 TTTTCTTTTCTTTTCTCCTCTCTTCATCAACTTCCTTTCTTCTTCTTC-TTTCCCTTC
1 TTTTCTTTTCTTTTCTCCTCTCTTCAT--ACTTACTTTCTTCTTCGTCTTTTCCCTTC
**
68840301 TTTTCTTTTCTTTTCTTTTCTCTTCAT-C-TACTTTC-TCTTCGTCTTTTCCCT
1 TTTTCTTTTCTTTTCTCCTCTCTTCATACTTACTTTCTTCTTCGTCTTTTCCCT
68840352 CATAGCCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
52 7 0.15
53 13 0.28
54 1 0.02
57 25 0.54
ACGTcount: A:0.05, C:0.32, G:0.01, T:0.62
Consensus pattern (56 bp):
TTTTCTTTTCTTTTCTCCTCTCTTCATACTTACTTTCTTCTTCGTCTTTTCCCTTC
Found at i:68844549 original size:22 final size:22
Alignment explanation
Indices: 68844521--68844563 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
68844511 AAAATATAGT
*
68844521 AAAATAAATAGTATAAAAAAAC
1 AAAATAAATAATATAAAAAAAC
*
68844543 AAAATAAATAATATATAAAAA
1 AAAATAAATAATATAAAAAAA
68844564 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATAAATAATATAAAAAAAC
Found at i:68844911 original size:14 final size:14
Alignment explanation
Indices: 68844881--68844945 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
68844871 CAATTTTATA
68844881 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
68844893 GAAATATATAAAAT
1 AAAATATATAAAAT
*
68844907 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
68844921 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
68844937 AAAATATAT
1 AAAATATAT
68844946 GATAAAATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
12 8 0.20
13 3 0.07
14 16 0.39
15 7 0.17
16 7 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:68846984 original size:206 final size:206
Alignment explanation
Indices: 68846627--68847177 Score: 809
Period size: 206 Copynumber: 2.7 Consensus size: 206
68846617 CTACTTCTTC
* * * **
68846627 GATTTGTTGTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCACACGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
* * * *
68846692 AAACCAAATCAGCTAAGTCTTT-GATTT-TCTCCTTGTAAGCACAAGGATACCAAACCATCTTGG
66 AAGCCAAATCAGCTATGT-TTTCGATTTGT-TCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * * ** *
68846755 ATCTGCTTCAGTCTAATCATCTGAACATTAGATCTGCTATGTGTCTGCCCTCCATCGAATATGGA
129 ATCTGCTTCAATATAAACATCTGAACACCAGATCTGCTATGTGTCTGCCCTCCATCAAATATGGA
*
68846820 GATGCCAAACTTT
194 GACGCCAAACTTT
*
68846833 GATTTGTTCTCTGACAATACAGAGATGCCACATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
*
68846898 AAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGAT
66 AAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
** * * *
68846963 CTGCTTCAATATAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCAAATATTGAGA
131 CTGCTTCAATATAAACATCTGAACACCAGATCTGCTATGTGTCTGCCCTCCATCAAATATGGAGA
68847028 CGCCAAACTTT
196 CGCCAAACTTT
* * * *
68847039 GATTTGTTCTCTGACAATACAAAGATGCCAAATTATCTTAGATTTGCTTCATGGTAAACACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
*
68847104 AAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
68847169 CTCGCTTCA
131 CT-GCTTCA
68847178 GCCAGATCTG
Statistics
Matches: 312, Mismatches: 30, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
205 3 0.01
206 302 0.97
207 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (206 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCACGTGA
AAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGGAT
CTGCTTCAATATAAACATCTGAACACCAGATCTGCTATGTGTCTGCCCTCCATCAAATATGGAGA
CGCCAAACTTT
Found at i:68858961 original size:21 final size:19
Alignment explanation
Indices: 68858927--68858988 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
68858917 TAAATTATAT
68858927 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
68858949 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
68858971 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
68858989 GTAATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:68859038 original size:21 final size:21
Alignment explanation
Indices: 68859012--68859052 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68859002 AAAATATAGT
*
68859012 AAAATAAATAGTATAAAAAAC
1 AAAATAAATAATATAAAAAAC
*
68859033 AAAATAAATAATATATAAAA
1 AAAATAAATAATATAAAAAA
68859053 TATAAGAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAATAAATAATATAAAAAAC
Found at i:68859398 original size:14 final size:14
Alignment explanation
Indices: 68859368--68859432 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
68859358 CAATTTTATA
68859368 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
68859380 GAAATATATAAAAT
1 AAAATATATAAAAT
*
68859394 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
68859408 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
68859424 AAAATATAT
1 AAAATATAT
68859433 GATAAAATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
12 8 0.20
13 3 0.07
14 16 0.39
15 7 0.17
16 7 0.17
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:68872563 original size:3 final size:3
Alignment explanation
Indices: 68872555--68872684 Score: 79
Period size: 3 Copynumber: 43.7 Consensus size: 3
68872545 TATAAAAGAC
* * * * * *
68872555 AAT AAT AAT AAT AAC AAT GAT AAT AAT AAT -AT AAT ACT TAT GAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
68872602 AAT AAT AGT AAT AAT AAG AA- AATT AAT ATT AAT ATT AAT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * *
68872647 GGAA- AAT AAT AAT AAC AAT GAT AAT -AT AGT AAT AAT AA
1 --AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
68872685 AAGTGAAATT
Statistics
Matches: 94, Mismatches: 26, Indels: 14
0.70 0.19 0.10
Matches are distributed among these distances:
2 8 0.09
3 83 0.88
4 2 0.02
5 1 0.01
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:68872564 original size:18 final size:20
Alignment explanation
Indices: 68872541--68872588 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
68872531 TGTTAAAAGG
68872541 ATAATATAA-AA-GACAATA
1 ATAATATAACAATGACAATA
*
68872559 ATAATAATAACAATGATAATA
1 ATAAT-ATAACAATGACAATA
68872580 ATAATATAA
1 ATAATATAA
68872589 TACTTATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
20 6 0.23
21 11 0.42
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (20 bp):
ATAATATAACAATGACAATA
Found at i:68872782 original size:24 final size:23
Alignment explanation
Indices: 68872725--68872785 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
68872715 AATGTATGTT
*
68872725 AATAACAATAATAATATATAAAG
1 AATAACAATAATAATATATAAAA
* *
68872748 GATAGGA-AATAATAATATGGTAAAA
1 AATA--ACAATAATAATAT-ATAAAA
68872773 AATAACAATAATA
1 AATAACAATAATA
68872786 TGATAATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
23 4 0.13
24 18 0.60
25 8 0.27
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (23 bp):
AATAACAATAATAATATATAAAA
Found at i:68873093 original size:3 final size:3
Alignment explanation
Indices: 68873085--68873134 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
68873075 AAATCAAAAT
*
68873085 ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA GATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
*
68873130 GTA AT
1 ATA AT
68873135 GGTAATAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:68873161 original size:20 final size:20
Alignment explanation
Indices: 68873102--68873161 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
68873092 TAATATAATA
* *
68873102 ATAATAATAATAGATAATAGTA
1 ATAATAGTAATAGA-AATAG-C
* *
68873124 ATAATAGTAATGGTAATAGC
1 ATAATAGTAATAGAAATAGC
*
68873144 ATAATAGTATTAGAAATA
1 ATAATAGTAATAGAAATA
68873162 TACAATATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 15 0.48
21 5 0.16
22 11 0.35
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.32
Consensus pattern (20 bp):
ATAATAGTAATAGAAATAGC
Found at i:68873421 original size:3 final size:3
Alignment explanation
Indices: 68873361--68873498 Score: 52
Period size: 3 Copynumber: 45.7 Consensus size: 3
68873351 AAGCTAAAAC
* * * *
68873361 TAA TAC TAA CAA TAG TAA -AA T-A TAA TATA TAA -AA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
* * * * * * *
68873404 -AGA -AA TAA TAG TAA TAA TAC GAA GAT TAA TAA TAG TAA TAT TAA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
68873448 CAA TAA TGA TAA TATA TATG TACA TGAA TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TA-A TA-A T-AA TAA TAA TAA TAA TAA TAA TAA
68873497 TA
1 TA
68873499 CTAGAATAAT
Statistics
Matches: 98, Mismatches: 29, Indels: 16
0.69 0.20 0.11
Matches are distributed among these distances:
2 8 0.08
3 77 0.79
4 12 0.12
5 1 0.01
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:68873742 original size:20 final size:21
Alignment explanation
Indices: 68873719--68873757 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
68873709 TTCTGGGCAT
68873719 AAAT-TAAAAGCCAAAAAACG
1 AAATATAAAAGCCAAAAAACG
68873739 AAATATAAAAGCCAAAAAA
1 AAATATAAAAGCCAAAAAA
68873758 TGCGGAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.69, C:0.13, G:0.08, T:0.10
Consensus pattern (21 bp):
AAATATAAAAGCCAAAAAACG
Found at i:68875208 original size:44 final size:44
Alignment explanation
Indices: 68875160--68875649 Score: 253
Period size: 44 Copynumber: 11.3 Consensus size: 44
68875150 CAGCCTGCTA
*
68875160 CCCTACTGCTTAGGGGGTTAAGGCTCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
* * * *
68875204 CCCTACTGCTTAAGGGGTTAA-GATC-T-GCAAATT---TCCTGCTA
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGC--CTTCGAT-CTGTTT
* ** **
68875245 CCCTACTGCTTAGGGGGTTAGGGCCCATCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
* ** * *
68875289 CCCTACTGCTTAGGGGGTTAA-GATCTGTACATCTTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGGATC-AT-CGCCTTCGA-TCTGTTT
* ** *
68875334 CCCTACTGCTTAGGGGGTTAGGGCCCATCGCCTTCGATATGTTT
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
* ** * *
68875378 CCCTACTGCTTAGCGGGTTAA-GATC-T-GTAAATTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGGATCATCG--CCTTCGA-TCTGTTT
* ** * * **
68875421 CCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTTGATCTAATT
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
* * * **** * * * *
68875465 CCCTACTACTCAGGGGGTTAA-GATCTGTAAATTTAG-CCTATTA
1 CCCTACTGCTTAGGGGGTTAAGGATC-ATCGCCTTCGATCTGTTT
* * *
68875508 CCCTACTACTTAGGGGTTTAAGGCTCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
** * * *
68875552 CCCTACTGCTTAGGGGGTTAA-GATC-T-GTAAATTCAACCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGGATCATCG--CCTTCGATCTGTTT
* *
68875595 ACCTACTGCTTA-GGGGTTAAGG-TCCATCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGGTTAAGGAT-CATCGCCTTCGATCTGTTT
*
68875638 CCCTACTACTTA
1 CCCTACTGCTTA
68875650 TGGTGATAAG
Statistics
Matches: 325, Mismatches: 91, Indels: 61
0.68 0.19 0.13
Matches are distributed among these distances:
40 1 0.00
41 27 0.08
42 17 0.05
43 109 0.34
44 131 0.40
45 38 0.12
46 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGGATCATCGCCTTCGATCTGTTT
Found at i:68875442 original size:43 final size:43
Alignment explanation
Indices: 68875198--68875853 Score: 250
Period size: 43 Copynumber: 15.1 Consensus size: 43
68875188 CGCCTTCGAT
* * * *
68875198 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTGCAAATT--TC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * ** ** ** *
68875239 CTGCTACCCTACTGCTTAGGGGGTTAGGGCCCATCATCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* *
68875283 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTACATCTTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTA-A-ATTCAGC
* ** ** *** *
68875328 CTGTTACCCTACTGCTTAGGGGGTTAGGGCCCATCGCCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* * *
68875372 ATGTTTCCCTACTGCTTAGCGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* ** ** ** * *
68875415 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTT-TGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* * * *
68875459 CTAATT-CCCTACTACTCAGGGGGTTAAGATCTGTAAATTTAGC
1 CT-GTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * * ** *
68875502 CTATTACCCTACTACTTAGGGGTTTAAGGCTCATCG--CCTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GATC-T-GTAAATTCAG-C
* *
68875546 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * *
68875589 CTGTTAACCTACTGCTTA-GGGGTTAAGGTCCATCGT--CTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGAT-C-T-GTAAATTCAG-C
* * * * *
68875632 CTGTTTCCCTACTACTTATGGTGATAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * ** * *
68875675 CTGTTACCCTACTGCTTA-GGGGTCAAGGCTCACCGT-CTTTGA-T
1 CTGTTACCCTACTGCTTAGGGGGTTAA-GAT--CTGTAAATTCAGC
* * * *
68875718 CTGCT-CCACTACTGCTTAGGGAGATAAGATCTGAAAATTCAGC
1 CTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
* * * ** ** ** *
68875761 CTGTTACCCTATTGCTTAGGTGTTTAAGGCCCATCACTTTC-GAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG-C
* *
68875805 CTGTTTCCCTACTGTTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
68875848 CTGTTA
1 CTGTTA
68875854 TGTAACACCC
Statistics
Matches: 429, Mismatches: 146, Indels: 78
0.66 0.22 0.12
Matches are distributed among these distances:
41 30 0.07
42 28 0.07
43 166 0.39
44 163 0.38
45 40 0.09
46 2 0.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
Found at i:68875468 original size:87 final size:87
Alignment explanation
Indices: 68874976--68875853 Score: 1052
Period size: 87 Copynumber: 10.1 Consensus size: 87
68874966 TACTTTCCAA
* * * *
68874976 CCTGTTACCCTACTGTTTAGGGGTTTAAGGCCCATCTCCTTCAATCTGTTTCCCTACTGTTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
*
68875041 GGGTTAAGATCTGCAAATTTCTAG
66 GGGTTAAGATCTGTAAA-TTC-AG
* * * *
68875065 CCTGCTACCCTACTGTTTA-GGGTTTAAGGCCCAT-GCATTGTCGATCTG-CTCCACTACTGCTT
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGC-CT-TCGATCTGTTTCC-CTACTGCTT
* ** * * *
68875127 AGGGAGACAAGACCTATAATCTTCAG
63 AGGGGGTTAAGATCTGTAA-ATTCAG
* * * *
68875153 CCTGCTACCCTACTGCTTAGGGGGTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGCTTAAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
* *
68875218 GGGTTAAGATCTGCAAATT--T
66 GGGTTAAGATCTGTAAATTCAG
* * * **
68875238 CCTGCTACCCTACTGCTTAGGGGGTTAGGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
*
68875303 GGGTTAAGATCTGTACATCTTCAG
66 GGGTTAAGATCTGTA-A-ATTCAG
* * * *
68875327 CCTGTTACCCTACTGCTTAGGGGGTTAGGGCCCATCGCCTTCGATATGTTTCCCTACTGCTTAGC
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
68875392 GGGTTAAGATCTGTAAATTCAG
66 GGGTTAAGATCTGTAAATTCAG
* * ** * *
68875414 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTTGATCTAATTCCCTACTACTCAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
*
68875479 GGGTTAAGATCTGTAAATTTAG
66 GGGTTAAGATCTGTAAATTCAG
* * *
68875501 CCTATTACCCTACTACTTAGGGGTTTAAGGCTCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
*
68875566 GGGTTAAGATCTGTAAATTCAA
66 GGGTTAAGATCTGTAAATTCAG
* * * * *
68875588 CCTGTTAACCTACTGCTTAGGGG-TTAAGGTCCATCGTCTTCGATCTGTTTCCCTACTACTTATG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
* *
68875652 GTGATAAGATCTGTAAATTCAG
66 GGGTTAAGATCTGTAAATTCAG
* * * * * *
68875674 CCTGTTACCCTACTGCTTAGGGG-TCAAGGCTCACCGTCTTTGATCTG-CTCCACTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCC-CTACTGCTTAG
* * *
68875737 GGAGATAAGATCTGAAAATTCAG
65 GGGGTTAAGATCTGTAAATTCAG
* * * * *
68875760 CCTGTTACCCTATTGCTTAGGTGTTTAAGGCCCATCACTTTCGATCTGTTTCCCTACTGTTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
68875825 GGGTTAAGATCTGTAAATTCAG
66 GGGTTAAGATCTGTAAATTCAG
68875847 CCTGTTA
1 CCTGTTA
68875854 TGTAACACCC
Statistics
Matches: 676, Mismatches: 99, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
85 77 0.11
86 148 0.22
87 236 0.35
88 72 0.11
89 141 0.21
90 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (87 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTCAG
Found at i:68878874 original size:44 final size:44
Alignment explanation
Indices: 68878809--68878961 Score: 147
Period size: 44 Copynumber: 3.5 Consensus size: 44
68878799 TTACATGTTA
*
68878809 CCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTTGATCTGATT
1 CCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTTGATCTGATT
*** * *
68878853 CCCTACTGCTTAGGGGGTTAAGAG--C-T-GTAAATTCAGCCTG-TT
1 CCCTACTGCTTAGGGGGTTAAG-GCCCATCG-CCTTTGA-TCTGATT
* *
68878895 ACCCTATTGCTTAGGGGGTTAA-GCCTTATCGCCTTTGATCTGATT
1 -CCCTACTGCTTAGGGGGTTAAGGCC-CATCGCCTTTGATCTGATT
68878940 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGGGTTAAG
68878962 ATCTGTAAAT
Statistics
Matches: 84, Mismatches: 14, Indels: 21
0.71 0.12 0.18
Matches are distributed among these distances:
41 2 0.02
42 6 0.07
43 24 0.29
44 44 0.52
45 7 0.08
46 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.25, T:0.33
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGGTTAAGGCCCATCGCCTTTGATCTGATT
Found at i:68878911 original size:87 final size:88
Alignment explanation
Indices: 68878804--68879008 Score: 333
Period size: 87 Copynumber: 2.4 Consensus size: 88
68878794 GGGTGTTACA
68878804 TGTTACCCTACTGCTTAGGGGTTTAAGGCC-CATCGCCTTTGATCTGATTCCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCCTCATCGCCTTTGATCTGATTCCCTACTGCTTAGGG
68878868 GGTTAAGAGCTGTAAATTCAGCC
66 GGTTAAGAGCTGTAAATTCAGCC
* * *
68878891 TGTTACCCTATTGCTTAGGGGGTTAA-GCCTTATCGCCTTTGATCTGATTCCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCCTCATCGCCTTTGATCTGATTCCCTACTGCTTAGGG
*
68878955 GGTTAAGATCTGTAAATTCAGCC
66 GGTTAAGAGCTGTAAATTCAGCC
** *
68878978 TGTTACTTTGCTGCTTAGGGGTTTAAGGCCT
1 TGTTACCCTACTGCTTAGGGGTTTAAGGCCT
68879009 GTGGCTTCAC
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
86 3 0.03
87 100 0.93
88 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (88 bp):
TGTTACCCTACTGCTTAGGGGTTTAAGGCCTCATCGCCTTTGATCTGATTCCCTACTGCTTAGGG
GGTTAAGAGCTGTAAATTCAGCC
Found at i:68878912 original size:43 final size:43
Alignment explanation
Indices: 68878853--68879010 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 43
68878843 TGATCTGATT
*
68878853 CCCTACTGCTTAGGGGGTTAAGAGCTGTAAATTCAGCCTGTTA
1 CCCTACTGCTTAGGGGGTTAAGACCTGTAAATTCAGCCTGTTA
*
68878896 CCCTATTGCTTAGGGGGTTAAG-CCT-T--A-TC-GCCTTTGATCTGA
1 CCCTACTGCTTAGGGGGTTAAGACCTGTAAATTCAGCC--TG-T-T-A
*
68878938 TTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTA
1 --CCCTACTGCTTAGGGGGTTAAGACCTGTAAATTCAGCCTGTTA
** * * *
68878983 CTTTGCTGCTTAGGGGTTTAAGGCCTGT
1 CCCTACTGCTTAGGGGGTTAAGACCTGT
68879011 GGCTTCACTG
Statistics
Matches: 92, Mismatches: 10, Indels: 26
0.72 0.08 0.20
Matches are distributed among these distances:
37 3 0.03
38 2 0.02
39 3 0.03
40 1 0.01
41 2 0.02
42 3 0.03
43 43 0.47
44 21 0.23
45 3 0.03
46 2 0.02
47 1 0.01
48 3 0.03
49 2 0.02
50 3 0.03
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGGTTAAGACCTGTAAATTCAGCCTGTTA
Found at i:68879182 original size:64 final size:64
Alignment explanation
Indices: 68879081--68879204 Score: 221
Period size: 64 Copynumber: 1.9 Consensus size: 64
68879071 GTATCTATGT
68879081 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
* * *
68879145 TTATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAATTAGATGTG
1 TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTG
68879205 TTATGAATGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (64 bp):
TTATGCCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAAATGTGATGC
Found at i:68883804 original size:5 final size:5
Alignment explanation
Indices: 68883794--68883834 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
68883784 TAATGCAAAT
*
68883794 AATGC AATGC AATGC AATGC AAATGC -ATGA AATG- AATGC AA
1 AATGC AATGC AATGC AATGC -AATGC AATGC AATGC AATGC AA
68883835 AAGAAAGGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 7 0.22
5 20 0.62
6 5 0.16
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (5 bp):
AATGC
Found at i:68883817 original size:24 final size:24
Alignment explanation
Indices: 68883785--68883834 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
68883775 GGGAAAGTCT
*
68883785 AATGCAAAT-AATGCAATGCAATGC
1 AATGCAAATGAATGAAATG-AATGC
*
68883809 AATGCAAATGCATGAAATGAATGC
1 AATGCAAATGAATGAAATGAATGC
68883833 AA
1 AA
68883835 AAGAAAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (24 bp):
AATGCAAATGAATGAAATGAATGC
Found at i:68886003 original size:15 final size:14
Alignment explanation
Indices: 68885983--68886072 Score: 53
Period size: 15 Copynumber: 6.4 Consensus size: 14
68885973 TGGTAAAAGG
68885983 ATAATATAAAAGACA
1 ATAATATAAAA-ACA
*
68885998 AT-A-ATAATAACA
1 ATAATATAAAAACA
* * *
68886010 AT--GATAATAATA
1 ATAATATAAAAACA
68886022 ATAATATAAAAGACA
1 ATAATATAAAA-ACA
*
68886037 ATAATAATAATAACA
1 ATAAT-ATAAAAACA
* *
68886052 ATGATAATAATAACA
1 ATAAT-ATAAAAACA
68886067 ATAATA
1 ATAATA
68886073 ATAATAACGG
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
12 15 0.24
13 5 0.08
14 7 0.11
15 30 0.48
16 5 0.08
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (14 bp):
ATAATATAAAAACA
Found at i:68886005 original size:3 final size:3
Alignment explanation
Indices: 68885997--68886079 Score: 87
Period size: 3 Copynumber: 27.7 Consensus size: 3
68885987 TATAAAAGAC
* * * *
68885997 AAT AAT AAT AAC AAT GAT AAT AAT AAT AAT -AT AAA AGAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * *
68886042 AAT AAT AAC AAT GAT AAT AAT AAC AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
68886080 CGGCTAGGGT
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
2 2 0.03
3 61 0.94
4 2 0.03
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:68886021 original size:21 final size:21
Alignment explanation
Indices: 68885997--68886079 Score: 105
Period size: 21 Copynumber: 4.0 Consensus size: 21
68885987 TATAAAAGAC
68885997 AATAATAATAACAATGATAAT
1 AATAATAATAACAATGATAAT
* *
68886018 AATAATAATATA-AAAGACAAT
1 AATAATAATA-ACAATGATAAT
68886039 AATAATAATAACAATGATAAT
1 AATAATAATAACAATGATAAT
* * *
68886060 AATAACAATAATAATAATAA
1 AATAATAATAACAATGATAA
68886080 CGGCTAGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
20 1 0.02
21 51 0.96
22 1 0.02
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.27
Consensus pattern (21 bp):
AATAATAATAACAATGATAAT
Found at i:68886029 original size:39 final size:40
Alignment explanation
Indices: 68885983--68886069 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 40
68885973 TGGTAAAAGG
68885983 ATAATATAAAAGAC-AATAATAATAACAATGATAATAATA
1 ATAATATAAAAGACAAATAATAATAACAATGATAATAATA
68886022 ATAATATAAAAGACAATAATAATAATAACAATGATAATAATA
1 ATAATATAAAAGAC-A-AATAATAATAACAATGATAATAATA
*
68886064 ACAATA
1 ATAATA
68886070 ATAATAATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
39 14 0.32
42 30 0.68
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.25
Consensus pattern (40 bp):
ATAATATAAAAGACAAATAATAATAACAATGATAATAATA
Found at i:68886073 original size:15 final size:15
Alignment explanation
Indices: 68885997--68886080 Score: 111
Period size: 15 Copynumber: 5.8 Consensus size: 15
68885987 TATAAAAGAC
68885997 AATAATAATAACAAT
1 AATAATAATAACAAT
* *
68886012 GATAATAATAATAAT
1 AATAATAATAACAAT
*
68886027 -ATAA-AA-GACAAT
1 AATAATAATAACAAT
68886039 AATAATAATAACAAT
1 AATAATAATAACAAT
*
68886054 GATAATAATAACAAT
1 AATAATAATAACAAT
68886069 AATAATAATAAC
1 AATAATAATAAC
68886081 GGCTAGGGTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
12 4 0.07
13 6 0.10
14 6 0.10
15 43 0.73
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26
Consensus pattern (15 bp):
AATAATAATAACAAT
Found at i:68887014 original size:21 final size:21
Alignment explanation
Indices: 68886990--68887031 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68886980 TCATCAGATC
*
68886990 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
68887011 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
68887032 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:68887502 original size:14 final size:14
Alignment explanation
Indices: 68887483--68887510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68887473 ACAAGCTGGC
68887483 TAACTGCGTCTAGA
1 TAACTGCGTCTAGA
68887497 TAACTGCGTCTAGA
1 TAACTGCGTCTAGA
68887511 CAAGCTCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (14 bp):
TAACTGCGTCTAGA
Found at i:68892919 original size:28 final size:28
Alignment explanation
Indices: 68892875--68893003 Score: 127
Period size: 28 Copynumber: 4.5 Consensus size: 28
68892865 ACTTGTAATA
68892875 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTACGGCCCAGATTGATACTGATAT
*
68892903 GGGTTACGGCCCAGATTGATACTGATAT
1 GGGCTACGGCCCAGATTGATACTGATAT
* *
68892931 GGGCTA-GGCCCAGTATACTCTGATACTTA-AG
1 GGGCTACGGCCCAG---A-T-TGATACTGATAT
* * * *
68892962 GGGCTATGGCCCGGATTAATATTGATAT
1 GGGCTACGGCCCAGATTGATACTGATAT
*
68892990 GGGCTAAGGCCCAG
1 GGGCTACGGCCCAG
68893004 TAAACTCTGA
Statistics
Matches: 83, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
27 13 0.16
28 46 0.55
29 1 0.01
30 1 0.01
31 8 0.10
32 14 0.17
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (28 bp):
GGGCTACGGCCCAGATTGATACTGATAT
Found at i:68892955 original size:60 final size:60
Alignment explanation
Indices: 68892891--68893014 Score: 160
Period size: 59 Copynumber: 2.1 Consensus size: 60
68892881 CGGCCCAGAT
* * * *
68892891 TGATACTGATATGGGTTACGGCCCAGATTGATACTGATATGGGCT-AGGCCCAGTATACTC
1 TGATACTGA-AGGGGCTACGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGTAAACTC
* * * *
68892951 TGATACTTAAGGGGCTATGGCCCGGATTAATATTGATATGGGCTAAGGCCCAGTAAACTC
1 TGATACTGAAGGGGCTACGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGTAAACTC
68893011 TGAT
1 TGAT
68893015 TTCTGAATAG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
59 29 0.53
60 26 0.47
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (60 bp):
TGATACTGAAGGGGCTACGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGTAAACTC
Done.