Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 204 of 362
Found at i:68896272 original size:24 final size:24
Alignment explanation
Indices: 68896240--68896292 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
68896230 CTGGTGGCGG
68896240 CTGCTAGACTACGATACTCAGCCT
1 CTGCTAGACTACGATACTCAGCCT
*
68896264 CTGCTAGACTATGATACTCAGCCT
1 CTGCTAGACTACGATACTCAGCCT
*
68896288 TTGCT
1 CTGCT
68896293 GTAGATCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (24 bp):
CTGCTAGACTACGATACTCAGCCT
Found at i:68901726 original size:8 final size:8
Alignment explanation
Indices: 68901710--68901747 Score: 67
Period size: 8 Copynumber: 4.8 Consensus size: 8
68901700 TAGTATTTAA
*
68901710 TTAATATT
1 TTAAAATT
68901718 TTAAAATT
1 TTAAAATT
68901726 TTAAAATT
1 TTAAAATT
68901734 TTAAAATT
1 TTAAAATT
68901742 TTAAAA
1 TTAAAA
68901748 ACATTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTAAAATT
Found at i:68901772 original size:19 final size:19
Alignment explanation
Indices: 68901750--68901800 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
68901740 TTTTAAAAAC
68901750 ATTTTTTATAATTAT-AAT
1 ATTTTTTATAATTATAAAT
* **
68901768 AATTTTTAATTTTTATAAAT
1 -ATTTTTTATAATTATAAAT
68901788 ATTTTTTATAATT
1 ATTTTTTATAATT
68901801 TTTTTGAATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTTATAATTATAAAT
Found at i:68901772 original size:38 final size:37
Alignment explanation
Indices: 68901716--68901800 Score: 107
Period size: 38 Copynumber: 2.3 Consensus size: 37
68901706 TTAATTAATA
* *
68901716 TTTTAAAATTTTAAAATTTTAAAATTTTAAAAACATT
1 TTTTATAATTATAAAATTTTAAAATTTTAAAAACATT
* * * *
68901753 TTTTATAATTATAATAATTTTTAATTTTTATAAATATT
1 TTTTATAATTATAA-AATTTTAAAATTTTAAAAACATT
68901791 TTTTATAATT
1 TTTTATAATT
68901801 TTTTTGAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
37 12 0.29
38 29 0.71
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (37 bp):
TTTTATAATTATAAAATTTTAAAATTTTAAAAACATT
Found at i:68901820 original size:38 final size:38
Alignment explanation
Indices: 68901716--68901824 Score: 98
Period size: 38 Copynumber: 2.9 Consensus size: 38
68901706 TTAATTAATA
* *
68901716 TTTTAAAATTTTAA-AATTT-TAAAATTTTAAAAACATT
1 TTTTATAATTATAATAATTTAT-AAATTTTAAAAACATT
* * * *
68901753 TTTTATAATTATAATAATTTTTAATTTTTATAAATATT
1 TTTTATAATTATAATAATTTATAAATTTTAAAAACATT
* **
68901791 TTTTATAATTTTTTTGAA-TTATAAATTTTAAAAA
1 TTTTATAATTATAAT-AATTTATAAATTTTAAAAA
68901825 ATAAACTAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
37 12 0.21
38 43 0.74
39 3 0.05
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (38 bp):
TTTTATAATTATAATAATTTATAAATTTTAAAAACATT
Found at i:68911189 original size:46 final size:44
Alignment explanation
Indices: 68911103--68911225 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 44
68911093 AGGGTATAAT
* *
68911103 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTA-
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGACACATCTCG-AG
* * *
68911149 GCCGATGCATGTCTTAGACATGTCTTACATTGGCTTACATCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGAC--ACATCTCGAG
68911195 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCTAGACATGTCTTACACT
68911226 AGCTCTCGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
44 11 0.16
45 13 0.19
46 43 0.64
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (44 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGACACATCTCGAG
Found at i:68911245 original size:46 final size:46
Alignment explanation
Indices: 68911149--68911282 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 46
68911139 ACATCTTGTA
* * *
68911149 GCCGATGCATGTCTTAGACATGTCTTACATTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATCTCAAG
* * *
68911195 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATCTCAAG
* **
68911241 GCCGATGCCATGTCCCAGATGTGGTCTTACACTGGCTCTCAT
1 GCCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTCTCAT
68911283 AATGTCGCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
46 45 0.61
47 12 0.16
48 17 0.23
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (46 bp):
GCCGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATCTCAAG
Found at i:68912045 original size:13 final size:13
Alignment explanation
Indices: 68912027--68912051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68912017 CTAAAAGTGC
68912027 AAAAATCATCAAG
1 AAAAATCATCAAG
68912040 AAAAATCATCAA
1 AAAAATCATCAA
68912052 AATCATTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:68913951 original size:15 final size:14
Alignment explanation
Indices: 68913928--68913963 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
68913918 AAATAATCCA
*
68913928 AATAAAAATGAATT
1 AATAAAAATGAATG
68913942 AATAAGAAATGAATG
1 AATAA-AAATGAATG
68913957 AATAAAA
1 AATAAAA
68913964 GAAGAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:68915236 original size:24 final size:24
Alignment explanation
Indices: 68915209--68915291 Score: 103
Period size: 24 Copynumber: 3.5 Consensus size: 24
68915199 GAAATGACTT
68915209 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
68915233 TGGCACTATGTGTGCAAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
68915257 CGGCACTATGTGTGTGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* *
68915281 TGTCAATATGT
1 TGGCACTATGT
68915292 ATCTGAATTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.24, C:0.12, G:0.28, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:68921909 original size:15 final size:14
Alignment explanation
Indices: 68921886--68921921 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
68921876 AAATAATCCA
*
68921886 AATAAAAATGAATT
1 AATAAAAATGAATG
68921900 AATAAGAAATGAATG
1 AATAA-AAATGAATG
68921915 AATAAAA
1 AATAAAA
68921922 GAAGAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (14 bp):
AATAAAAATGAATG
Found at i:68929710 original size:38 final size:38
Alignment explanation
Indices: 68929642--68929921 Score: 238
Period size: 38 Copynumber: 6.9 Consensus size: 38
68929632 TTTCAAATTA
* * * * *
68929642 ACATGTATAACCATGGCATATTCACATAGCACCACATT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
*
68929680 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCAC----AT-T
* * * *
68929723 ATCAATATATGTAACCGTAGCATATCCACATAGCACCA-AGTT
1 A-C-ATGT-T-TAACCGTGGTATATCCACTTAGCACCACA-TT
*
68929765 ACATGTTTAACCGTGGTATATTCACTTAGCACCACATTAAT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACA-T--T
* * **
68929806 GAATCAATATATGTAACCGTAGTATATCCACTTAGCACCATGTT
1 --A-C-ATGT-T-TAACCGTGGTATATCCACTTAGCACCACATT
*
68929850 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
68929888 ACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 ACATGTTTAACCGTGGTATATCCACTTAGCACCA
68929922 TGTTAATGAA
Statistics
Matches: 198, Mismatches: 25, Indels: 38
0.76 0.10 0.15
Matches are distributed among these distances:
38 116 0.59
39 4 0.02
40 6 0.03
41 3 0.02
42 5 0.03
43 3 0.02
44 3 0.02
45 6 0.03
46 3 0.02
47 49 0.25
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGTATATCCACTTAGCACCACATT
Found at i:68929753 original size:85 final size:84
Alignment explanation
Indices: 68929657--68929888 Score: 383
Period size: 85 Copynumber: 2.7 Consensus size: 84
68929647 TATAACCATG
*
68929657 GCATATTCACATAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
1 GCATATCCACATAGCACCA-ATTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
68929722 AATCAATATATGTAACCGTA
65 AATCAATATATGTAACCGTA
* *
68929742 GCATATCCACATAGCACCAAGTTACATGTTTAACCGTGGTATATTCACTTAGCACCACATTAATG
1 GCATATCCACATAGCACCAA-TTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATG
68929807 AATCAATATATGTAACCGTA
65 AATCAATATATGTAACCGTA
* * *
68929827 GTATATCCACTTAGCACCATGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA
1 GCATATCCACATAGCACCA-ATTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTA
68929889 CATGTTTAAC
Statistics
Matches: 137, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
84 1 0.01
85 136 0.99
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (84 bp):
GCATATCCACATAGCACCAATTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATGA
ATCAATATATGTAACCGTA
Found at i:68929863 original size:123 final size:123
Alignment explanation
Indices: 68929734--68929975 Score: 394
Period size: 123 Copynumber: 2.0 Consensus size: 123
68929724 TCAATATATG
*
68929734 TAACCGTAGCATATCCACATAGCACCAAGTTACATGTTTAACCGTGGTATATTCACTTAGCACCA
1 TAACCGTAGCATATCCACATAGCACCAAGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
68929799 CATTAATGAATCAATATATGTAACCGTAGTATATCCACTTAGCACCATGTTACATGTT
66 CATTAATGAATCAATATATGTAACCGTAGCATATCCACTTAGCACCACGTTACATGTT
* * * *
68929857 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTAGCATATCCACATAGCACCAAGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
** *
68929922 TGTTAATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTTACA
66 CATTAATGAATCAATATATGTAACCGTAGCATATCCACTTAGCACCACGTTACA
68929976 CGTATCAATA
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
123 109 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (123 bp):
TAACCGTAGCATATCCACATAGCACCAAGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATGTAACCGTAGCATATCCACTTAGCACCACGTTACATGTT
Found at i:68930004 original size:48 final size:47
Alignment explanation
Indices: 68929890--68930011 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
68929880 ACCACGTTAC
* * *
68929890 ATGTTTAACCGTGGTATATCCACTTAGCACCATGTTAATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTAACGAATCAAT
* * *
68929937 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACACGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTA-ACGAATCAAT
*
68929985 ATGTGTAATCGTGGTATATCCACTTAG
1 ATGTGTAACCGTGGTATATCCACTTAG
68930012 AAGCACATTT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 33 0.51
48 32 0.49
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (47 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTAACGAATCAAT
Found at i:68942151 original size:1 final size:1
Alignment explanation
Indices: 68942140--68942210 Score: 52
Period size: 1 Copynumber: 71.0 Consensus size: 1
68942130 TAATGTCTTC
* * * ** * * * * *
68942140 TTTTTTCTTTTTTTCTTTTCTTTTCATTTTTTTCTTTTCTTTTTTCTTATTTTTTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68942205 TTTTTT
1 TTTTTT
68942211 ACTTTTAGAT
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (1 bp):
T
Found at i:68942160 original size:13 final size:12
Alignment explanation
Indices: 68942140--68942209 Score: 95
Period size: 12 Copynumber: 5.5 Consensus size: 12
68942130 TAATGTCTTC
68942140 TTTTTTCTTTTT
1 TTTTTTCTTTTT
68942152 TTCTTTTCTTTTCAT
1 TT-TTTTCTTTT--T
*
68942167 TTTTTTCTTTTC
1 TTTTTTCTTTTT
68942179 TTTTTTCTTATTT
1 TTTTTTCTT-TTT
68942192 TTTTTTCTTTTT
1 TTTTTTCTTTTT
68942204 TTTTTT
1 TTTTTT
68942210 TACTTTTAGA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
12 20 0.38
13 20 0.38
14 9 0.17
15 3 0.06
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:68942169 original size:19 final size:18
Alignment explanation
Indices: 68942142--68942216 Score: 89
Period size: 19 Copynumber: 3.9 Consensus size: 18
68942132 ATGTCTTCTT
68942142 TTTTCTTTTTTTCTTTTC
1 TTTTCTTTTTTTCTTTTC
68942160 TTTTCATTTTTTTCTTTTC
1 TTTTC-TTTTTTTCTTTTC
68942179 TTTTTTCTTATTTTT-TTTTC
1 --TTTTCTT-TTTTTCTTTTC
*
68942199 TTTTTTTTTTTTACTTTT
1 TTTTCTTTTTTT-CTTTT
68942217 AGATCTCATA
Statistics
Matches: 50, Mismatches: 1, Indels: 11
0.81 0.02 0.18
Matches are distributed among these distances:
17 5 0.10
18 11 0.22
19 17 0.34
20 7 0.14
21 10 0.20
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTCTTTTTTTCTTTTC
Found at i:68942180 original size:39 final size:39
Alignment explanation
Indices: 68942137--68942216 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
68942127 AGTTAATGTC
68942137 TTCTTTTTTCTT-TTTTTCTTTTCTTTTCATTTTTTT-CTT
1 TTCTTTTTTCTTATTTTT-TTTTCTTTT-ATTTTTTTACTT
*
68942176 TTCTTTTTTCTTATTTTTTTTTCTTTTTTTTTTTTACTT
1 TTCTTTTTTCTTATTTTTTTTTCTTTTATTTTTTTACTT
68942215 TT
1 TT
68942217 AGATCTCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
38 7 0.18
39 26 0.68
40 5 0.13
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (39 bp):
TTCTTTTTTCTTATTTTTTTTTCTTTTATTTTTTTACTT
Found at i:68942210 original size:13 final size:13
Alignment explanation
Indices: 68942140--68942216 Score: 93
Period size: 13 Copynumber: 5.8 Consensus size: 13
68942130 TAATGTCTTC
68942140 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
* *
68942153 TCTTTTCTTTTCAT
1 TTTTTTCTTTT-TT
*
68942167 TTTTTTC-TTTTC
1 TTTTTTCTTTTTT
*
68942179 TTTTTTCTTATTT
1 TTTTTTCTTTTTT
68942192 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
68942205 TTTTTTACTTTT
1 TTTTTT-CTTTT
68942217 AGATCTCATA
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
12 7 0.13
13 34 0.64
14 12 0.23
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:68998400 original size:30 final size:30
Alignment explanation
Indices: 68998360--68998419 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
68998350 ATCCCGAGCC
*
68998360 TAGGGACAAAAGTGTAATTATGCAAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
* * *
68998390 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGACAAAAATGTAATTATGCAAAAGTT
68998420 CATCTTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAATGTAATTATGCAAAAGTT
Found at i:69005641 original size:43 final size:42
Alignment explanation
Indices: 69005591--69005736 Score: 158
Period size: 43 Copynumber: 3.5 Consensus size: 42
69005581 TATCCCAGAT
* *
69005591 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACATGTAATCACATA-CGATGCCAATGTCCTAGAC
* * * * *
69005634 AGGGTCTTACACGTAATCGA-TTAACGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATC-ACAT-ACGATGCCAATGTCCTAGAC
*
69005677 ATGGTCTTACATGTAATCACA-A--A-ACCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCACATACGATGCCAATGTCCTAGAC
69005715 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACATGTAATCACAT
69005737 CTCGGTAACC
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
38 33 0.38
39 1 0.01
41 1 0.01
42 1 0.01
43 48 0.56
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCACATACGATGCCAATGTCCTAGAC
Found at i:69005717 original size:38 final size:38
Alignment explanation
Indices: 69005663--69005735 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
69005653 ATTAACGATG
69005663 CCAATGTCCCAAACATGGTCTTACATGTAATCACAAAA
1 CCAATGTCCCAAACATGGTCTTACATGTAATCACAAAA
* *
69005701 CCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 CCAATGTCCCAAACATGGTCTTACATGTAATCACA
69005736 TCTCGGTAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (38 bp):
CCAATGTCCCAAACATGGTCTTACATGTAATCACAAAA
Found at i:69010657 original size:28 final size:28
Alignment explanation
Indices: 69010601--69010688 Score: 126
Period size: 28 Copynumber: 3.2 Consensus size: 28
69010591 AGCATAGCTG
* * **
69010601 CCAG-AACAGATA-TTGTGACAAAGTTA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
69010627 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
69010655 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
69010683 CCAGAA
1 CCAGAA
69010689 CACTTCCTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
26 4 0.07
27 8 0.14
28 44 0.79
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:69011963 original size:18 final size:17
Alignment explanation
Indices: 69011915--69011966 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 17
69011905 ATTCGGCTAT
69011915 AGAGGAAAAA-AAGAAG
1 AGAGGAAAAAGAAGAAG
* *
69011931 AGA--AAATAGATGAAG
1 AGAGGAAAAAGAAGAAG
69011946 AGAGGAGAAAAGAAGAAG
1 AGAGGA-AAAAGAAGAAG
69011964 AGA
1 AGA
69011967 AAAGAATTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 4 0.14
15 8 0.29
16 3 0.11
17 1 0.04
18 12 0.43
ACGTcount: A:0.63, C:0.00, G:0.33, T:0.04
Consensus pattern (17 bp):
AGAGGAAAAAGAAGAAG
Found at i:69015077 original size:28 final size:28
Alignment explanation
Indices: 69015032--69015128 Score: 149
Period size: 28 Copynumber: 3.5 Consensus size: 28
69015022 ATATTGTGAT
* * * *
69015032 AGAGTCACCAGATACAGATAATTATGGC
1 AGAGCCACCAGAAACAGATATTTGTGGC
*
69015060 AGGGCCACCAGAAACAGATATTTGTGGC
1 AGAGCCACCAGAAACAGATATTTGTGGC
69015088 AGAGCCACCAGAAACAGATATTTGTGGC
1 AGAGCCACCAGAAACAGATATTTGTGGC
69015116 AGAGCCACCAGAA
1 AGAGCCACCAGAA
69015129 TGCTTCCTCT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (28 bp):
AGAGCCACCAGAAACAGATATTTGTGGC
Found at i:69016858 original size:48 final size:48
Alignment explanation
Indices: 69016806--69017106 Score: 317
Period size: 48 Copynumber: 6.4 Consensus size: 48
69016796 CCATGTTAAC
*
69016806 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
* * * * * *
69016854 CCGCACACATAGTGCCATA-TAAATC-C--GCACAGTGCCATACAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
* *
69016898 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
* ** * *
69016946 CCGCACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATCCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATAT--TGACATTCAAAT
* *
69016994 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
** ** * * *
69017042 CCGCACACATAGTGCCATACAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
**
69017090 TAGCACACATAGTGCCA
1 CCGCACACATAGTGCCA
69017107 AAGTCATTTC
Statistics
Matches: 205, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
44 30 0.15
45 5 0.02
46 9 0.04
47 10 0.05
48 139 0.68
49 5 0.02
50 7 0.03
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (48 bp):
CCGCACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAAT
Found at i:69016863 original size:24 final size:24
Alignment explanation
Indices: 69016778--69017106 Score: 243
Period size: 24 Copynumber: 13.9 Consensus size: 24
69016768 TCAAGCAAGG
*
69016778 AAATTCGCACCCATAGTGCCATGT-
1 AAATTCGCACACATAGTGCCAT-TC
* **
69016802 TAACCCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
69016824 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
69016850 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* *
69016874 AAA-TC-CGCAC--AGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
69016894 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
69016916 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
*
69016942 AAATCCGCACACATAGTGCCATAT-
1 AAATTCGCACACATAGTGCCAT-TC
* * *
69016966 AAATCCGCACATATAGTGCCATCC
1 AAATTCGCACACATAGTGCCATTC
69016990 AAATTCGCACACATAGTGCC-TT-
1 AAATTCGCACACATAGTGCCATTC
* * * *
69017012 AGTAATTCACATACATATTGACATTC
1 A--AATTCGCACACATAGTGCCATTC
* *
69017038 AAATCCGCACACATAGTGCCATAC
1 AAATTCGCACACATAGTGCCATTC
*
69017062 AAATTCGTACACATAGTGCCATTC
1 AAATTCGCACACATAGTGCCATTC
*
69017086 AAATTAGCACACATAGTGCCA
1 AAATTCGCACACATAGTGCCA
69017107 AAGTCATTTC
Statistics
Matches: 235, Mismatches: 50, Indels: 40
0.72 0.15 0.12
Matches are distributed among these distances:
20 11 0.05
21 2 0.01
22 11 0.05
23 4 0.02
24 196 0.83
25 8 0.03
26 3 0.01
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (24 bp):
AAATTCGCACACATAGTGCCATTC
Found at i:69016889 original size:20 final size:20
Alignment explanation
Indices: 69016864--69016904 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
69016854 CCGCACACAT
*
69016864 AGTGCCATATAAATCCGCAC
1 AGTGCCATACAAATCCGCAC
*
69016884 AGTGCCATACAAATTCGCAC
1 AGTGCCATACAAATCCGCAC
69016904 A
1 A
69016905 CATAGTGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.29, G:0.15, T:0.20
Consensus pattern (20 bp):
AGTGCCATACAAATCCGCAC
Found at i:69017012 original size:96 final size:95
Alignment explanation
Indices: 69016807--69017105 Score: 505
Period size: 96 Copynumber: 3.2 Consensus size: 95
69016797 CATGTTAACC
69016807 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
69016872 ATAAATCCGCAC---AGTGCCATACAAATT
66 ATAAATCCGCACAATAGTGCCATACAAATT
69016899 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
*
69016964 ATAAATCCGCACATATAGTGCCATCCAAATT
66 ATAAATCCGCACA-ATAGTGCCATACAAATT
69016995 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
* * * *
69017060 ACAAATTCGTACACATAGTGCCATTCAAATT
66 ATAAATCCGCACA-ATAGTGCCATACAAATT
*
69017091 AGCACACATAGTGCC
1 CGCACACATAGTGCC
69017106 AAAGTCATTT
Statistics
Matches: 196, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
92 77 0.39
96 119 0.61
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (95 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCAT
ATAAATCCGCACAATAGTGCCATACAAATT
Found at i:69017554 original size:16 final size:16
Alignment explanation
Indices: 69017533--69017564 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69017523 ATTATTTCAA
69017533 ATAAACACACATATAT
1 ATAAACACACATATAT
*
69017549 ATAAACACATATATAT
1 ATAAACACACATATAT
69017565 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:69020150 original size:28 final size:27
Alignment explanation
Indices: 69020087--69020238 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
69020077 ATATTAAGTC
* * *
69020087 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
69020114 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
69020142 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
69020169 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
69020197 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
69020224 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69020239 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:69020155 original size:55 final size:55
Alignment explanation
Indices: 69020087--69020238 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
69020077 ATATTAAGTC
* * *
69020087 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
69020142 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
69020197 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
69020239 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:69028132 original size:28 final size:27
Alignment explanation
Indices: 69028069--69028220 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
69028059 ATATTAAGTC
* * *
69028069 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
69028096 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
69028124 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
69028151 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
69028179 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
69028206 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69028221 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:69028153 original size:55 final size:55
Alignment explanation
Indices: 69028069--69028220 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
69028059 ATATTAAGTC
* * *
69028069 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
69028124 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
69028179 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
69028221 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:69037839 original size:47 final size:47
Alignment explanation
Indices: 69037785--69037975 Score: 283
Period size: 47 Copynumber: 4.1 Consensus size: 47
69037775 GATTTTATGA
** * * *
69037785 GATGAATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
69037832 GATGAATGTGAACATGCAAATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
69037879 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* ** *
69037926 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCTAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
69037973 GAT
1 GAT
69037976 AAACATGGAA
Statistics
Matches: 131, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:69037859 original size:25 final size:24
Alignment explanation
Indices: 69037829--69037953 Score: 59
Period size: 25 Copynumber: 5.2 Consensus size: 24
69037819 TAATGGCCAA
69037829 TGTGATGAATGTGAACATGCAAAT
1 TGTGATGAATGTGAACATGCAAAT
* * *
69037853 GTGTGAT-AAGGCCG-A-ATGGCCAA-
1 -TGTGATGAATG-TGAACAT-GCAAAT
*
69037876 TGTGATGAATGTGAACATGCATAT
1 TGTGATGAATGTGAACATGCAAAT
* * *
69037900 ATGTGAT-AAGGCCG-A-ATGGCCAA-
1 -TGTGATGAATG-TGAACAT-GCAAAT
*
69037923 TGTGATGAATGTGAACATGCATAT
1 TGTGATGAATGTGAACATGCAAAT
69037947 GTGTGAT
1 -TGTGAT
69037954 AAGGTAGAAT
Statistics
Matches: 71, Mismatches: 15, Indels: 28
0.62 0.13 0.25
Matches are distributed among these distances:
22 14 0.20
23 18 0.25
24 19 0.27
25 20 0.28
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (24 bp):
TGTGATGAATGTGAACATGCAAAT
Found at i:69037881 original size:22 final size:22
Alignment explanation
Indices: 69037854--69037928 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
69037844 CATGCAAATG
69037854 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
69037876 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
69037901 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
69037923 TGTGAT
1 TGTGAT
69037929 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.32, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:69037997 original size:94 final size:94
Alignment explanation
Indices: 69037789--69038021 Score: 301
Period size: 94 Copynumber: 2.5 Consensus size: 94
69037779 TTATGAGATG
* * *
69037789 AATGTGAATGTGTATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAACATGCAAATG
1 AATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAAATG
* *
69037854 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGTGATAAGGCAGAATGGCCAATGTGATA
* * *
69037883 AATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATG
1 AATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAAATG
* *
69037948 TGTGATAAGGTAGAATGGCTAATGTGATAA
66 TGTGATAAGGCAGAATGGCCAATGTGAT-A
** *
69037978 ACATG-GAA-GTGTATATATGTGGCGAA-GCCGAATGGCTAATGTGA
1 A-ATGTGAACGTGTATATATGT-GATAAGGCCGAATGGCCAATGTGA
69038022 GATATGTATG
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
94 111 0.92
95 7 0.06
96 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (94 bp):
AATGTGAACGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCAAATG
TGTGATAAGGCAGAATGGCCAATGTGATA
Found at i:69040050 original size:48 final size:48
Alignment explanation
Indices: 69039995--69040338 Score: 366
Period size: 48 Copynumber: 7.3 Consensus size: 48
69039985 CCATGTTAAC
69039995 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
69040043 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * * *
69040091 CCGCACACATAGTGCCATA-TAAATC-C--GC--A--GCCATACAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
*
69040131 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * ** * *
69040179 CCACACACATAGTGCCATA-TAAATC-CGCACATATAGTGCCATACAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATAT--TGACATTCAAAT
*
69040227 TCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
* * * ** ** * * *
69040275 CCACACAGATAGTGCCATACAAATTCGTACACATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
**
69040323 TAGCACACATAGTGCC
1 CCGCACACATAGTGCC
69040339 AAAGTCATTT
Statistics
Matches: 242, Mismatches: 42, Indels: 24
0.79 0.14 0.08
Matches are distributed among these distances:
40 26 0.11
41 5 0.02
42 2 0.01
44 2 0.01
46 9 0.04
47 10 0.04
48 176 0.73
49 5 0.02
50 7 0.03
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (48 bp):
CCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAAT
Found at i:69040100 original size:24 final size:23
Alignment explanation
Indices: 69039967--69040336 Score: 107
Period size: 24 Copynumber: 15.8 Consensus size: 23
69039957 TCAAGCAAGG
* * *
69039967 AAATTCGCACCCATAGTGCCATGT
1 AAATCCGCACACATAGTGACAT-T
* * *
69039991 TAACCCGCACACATAGTG-CCTT
1 AAATCCGCACACATAGTGACATT
* * * *
69040013 AGTAATTCACATACATATTGACATT
1 A--AATCCGCACACATAGTGACATT
*
69040038 CAAATCCGCACACATAGTG-CCTT
1 -AAATCCGCACACATAGTGACATT
* * * *
69040061 AGTAATTCACATACATATTGACATT
1 A--AATCCGCACACATAGTGACATT
*
69040086 CAAATCCGCACACATAGTGCCATAT
1 -AAATCCGCACACATAGTGACAT-T
69040111 AAATCCGCAGC-C--A-T-AC---
1 AAATCCGCA-CACATAGTGACATT
* *
69040127 AAATTCGCACACATAGTG-CCTT
1 AAATCCGCACACATAGTGACATT
* * * *
69040149 AGTAATTCACATACATATTGACATT
1 A--AATCCGCACACATAGTGACATT
* *
69040174 CAAATCCACACACATAGTGCCATAT
1 -AAATCCGCACACATAGTGACAT-T
* * *
69040199 AAATCCGCACATATAGTGCCATAC
1 AAATCCGCACACATAGTGACAT-T
* *
69040223 AAATTCGCACACATAGTG-CCTT
1 AAATCCGCACACATAGTGACATT
* * * *
69040245 AGTAATTCACATACATATTGACATT
1 A--AATCCGCACACATAGTGACATT
* * * *
69040270 CAAATCCACACAGATAGTGCCATAC
1 -AAATCCGCACACATAGTGACAT-T
* * *
69040295 AAATTCGTACACATAGTGCCATT
1 AAATCCGCACACATAGTGACATT
**
69040318 CAAATTAGCACACATAGTG
1 -AAATCCGCACACATAGTG
69040337 CCAAAGTCAT
Statistics
Matches: 256, Mismatches: 61, Indels: 58
0.68 0.16 0.15
Matches are distributed among these distances:
15 1 0.00
16 9 0.04
18 1 0.00
19 2 0.01
20 1 0.00
21 1 0.00
22 5 0.02
23 7 0.03
24 210 0.82
25 15 0.06
26 4 0.02
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (23 bp):
AAATCCGCACACATAGTGACATT
Found at i:69040187 original size:88 final size:91
Alignment explanation
Indices: 69040038--69040338 Score: 428
Period size: 96 Copynumber: 3.2 Consensus size: 91
69040028 TATTGACATT
* *
69040038 CAAATCCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAG
1 CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAG
69040103 TGCCATATAAATCCG-C-A-GCCATA
66 TGCCATATAAATCCGACAAGGCCATA
69040126 CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAG
1 CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAG
69040191 TGCCATATAAATCCGCACATATAGTGCCATA
66 TGCCATATAAATCCG-AC--A-AG-GCCATA
*
69040222 CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACAGATAG
1 CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAG
* * *
69040287 TGCCATACAAATTCGTACACATAGTGCCATT
66 TGCCATATAAATCCG---ACA-AG-GCCATA
*
69040318 CAAATTAGCACACATAGTGCC
1 CAAATTCGCACACATAGTGCC
69040339 AAAGTCATTT
Statistics
Matches: 196, Mismatches: 7, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
88 78 0.40
90 1 0.01
94 1 0.01
96 113 0.58
98 3 0.02
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (91 bp):
CAAATTCGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAG
TGCCATATAAATCCGACAAGGCCATA
Found at i:69040232 original size:136 final size:136
Alignment explanation
Indices: 69039996--69040242 Score: 390
Period size: 136 Copynumber: 1.8 Consensus size: 136
69039986 CATGTTAACC
* *
69039996 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCTT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAGTGCCAT
* * *
69040061 AGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATATAAATCCGCAGCCATA
66 AGTAAATCACACACATATTGACATACAAATCCGCACACATAGTGCCATATAAATCCGCAGCCATA
69040126 CAAATT
131 CAAATT
69040132 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAGTGCCAT
1 CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAGTGCCAT
* * *
69040197 A-TAAATC-CGCACATATAGTGCCATACAAATTCGCACACATAGTGCC
66 AGTAAATCACACACATAT--TGACATACAAATCCGCACACATAGTGCC
69040243 TTAGTAATTC
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
134 7 0.07
135 5 0.05
136 89 0.88
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (136 bp):
CGCACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCACACACATAGTGCCAT
AGTAAATCACACACATATTGACATACAAATCCGCACACATAGTGCCATATAAATCCGCAGCCATA
CAAATT
Found at i:69040337 original size:24 final size:24
Alignment explanation
Indices: 69040120--69040339 Score: 125
Period size: 24 Copynumber: 9.2 Consensus size: 24
69040110 TAAATCCGCA
* *
69040120 GCCATACAAATTCGCACACATAGT
1 GCCATTCAAATTAGCACACATAGT
* *
69040144 GCC-TT-AGTAATTCA-CATACATATT
1 GCCATTCA--AATT-AGCACACATAGT
* *
69040168 GACATTCAAATCCA-CACACATAGT
1 GCCATTCAAAT-TAGCACACATAGT
** *
69040192 GCCATAT-AAATCCGCACATATAGT
1 GCCAT-TCAAATTAGCACACATAGT
* *
69040216 GCCATACAAATTCGCACACATAGT
1 GCCATTCAAATTAGCACACATAGT
* *
69040240 GCC-TT-AGTAATTCA-CATACATATT
1 GCCATTCA--AATT-AGCACACATAGT
* * *
69040264 GACATTCAAATCCA-CACAGATAGT
1 GCCATTCAAAT-TAGCACACATAGT
* * *
69040288 GCCATACAAATTCGTACACATAGT
1 GCCATTCAAATTAGCACACATAGT
69040312 GCCATTCAAATTAGCACACATAGT
1 GCCATTCAAATTAGCACACATAGT
69040336 GCCA
1 GCCA
69040340 AAGTCATTTC
Statistics
Matches: 148, Mismatches: 32, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
22 2 0.01
23 3 0.02
24 136 0.92
25 5 0.03
26 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.25
Consensus pattern (24 bp):
GCCATTCAAATTAGCACACATAGT
Found at i:69040787 original size:16 final size:16
Alignment explanation
Indices: 69040766--69040797 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69040756 ATCACTTCAA
69040766 ATAAACACACATATAT
1 ATAAACACACATATAT
*
69040782 ATAAACACATATATAT
1 ATAAACACACATATAT
69040798 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:69042792 original size:18 final size:18
Alignment explanation
Indices: 69042736--69042792 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
69042726 AACTATAGAG
69042736 GAAAAGAAGAAGAAGAGAA
1 GAAAAGAAGAAG-AGAGAA
* * *
69042755 -AATAGATGAAGAGAGGA
1 GAAAAGAAGAAGAGAGAA
*
69042772 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
69042790 GAA
1 GAA
69042793 TTTTCAGAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 5 0.17
18 25 0.83
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.04
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:69043807 original size:3 final size:3
Alignment explanation
Indices: 69043799--69043830 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
69043789 AAACCAACGA
*
69043799 AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
69043831 CATCCAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:69044727 original size:43 final size:43
Alignment explanation
Indices: 69044671--69044800 Score: 158
Period size: 43 Copynumber: 3.0 Consensus size: 43
69044661 ATATCGTACA
* * * *
69044671 ATGCCAACATCCTAGATGTGGTCTTACATGTA-ATCACATATCG
1 ATGCCAACGTCCTAGAAGTGGTCTTACACG-AGAACACATATCG
69044714 ATGCC-ACTGTCCTAGACAG-GGTCTTACACGAGAACACATATCG
1 ATGCCAAC-GTCCTAGA-AGTGGTCTTACACGAGAACACATATCG
* *
69044757 ATGCCAACGTCCCAGACGTGGTCTTACACGAGAACACATATCG
1 ATGCCAACGTCCTAGAAGTGGTCTTACACGAGAACACATATCG
69044800 A
1 A
69044801 AAATTCTATG
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
42 4 0.05
43 69 0.91
44 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCTAGAAGTGGTCTTACACGAGAACACATATCG
Found at i:69046223 original size:28 final size:28
Alignment explanation
Indices: 69046192--69046250 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
69046182 TTTATCTATT
69046192 TCATACTTTAAAACATACCATATCATCA
1 TCATACTTTAAAACATACCATATCATCA
69046220 TCATACTTTAAAACATACCATATCATCA
1 TCATACTTTAAAACATACCATATCATCA
69046248 TCA
1 TCA
69046251 ACAAGCCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.32
Consensus pattern (28 bp):
TCATACTTTAAAACATACCATATCATCA
Found at i:69048712 original size:17 final size:17
Alignment explanation
Indices: 69048677--69048709 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69048667 TTGGGCCAAA
69048677 ATGGGTCTTATGGGCCC
1 ATGGGTCTTATGGGCCC
*
69048694 ATGGG-CTTGTGGGCCC
1 ATGGGTCTTATGGGCCC
69048710 CATACGAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.09, C:0.24, G:0.39, T:0.27
Consensus pattern (17 bp):
ATGGGTCTTATGGGCCC
Found at i:69049347 original size:19 final size:19
Alignment explanation
Indices: 69049296--69049339 Score: 70
Period size: 21 Copynumber: 2.2 Consensus size: 19
69049286 ACATAGAAGC
69049296 ACACACCCGTGTGGAAGGGCA
1 ACACACCCGTGT-G-AGGGCA
69049317 ACACACCCGTGTGAGGGCA
1 ACACACCCGTGTGAGGGCA
69049336 ACAC
1 ACAC
69049340 GCTCGTGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.43
20 1 0.04
21 12 0.52
ACGTcount: A:0.30, C:0.32, G:0.30, T:0.09
Consensus pattern (19 bp):
ACACACCCGTGTGAGGGCA
Found at i:69050490 original size:47 final size:47
Alignment explanation
Indices: 69050411--69050685 Score: 242
Period size: 46 Copynumber: 5.9 Consensus size: 47
69050401 GTGGGTAAGG
*
69050411 TGCCGATGCCATGTCCCAGACACAGTCTTACACTAGCTCACATCTC-A
1 TGCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTCACATCTCGA
* * * *
69050458 TGTCGATGCCATGTCCCAAACATGGTCATACACTGGCT-ATCATCTCG-
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCA-CATCTCGA
* *
69050505 TAGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGA
* * * * * *
69050552 GGTCGATG-AATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGA
* * * * *
69050598 TGCCAATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAAT-G-
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCACAT-CTCGA
* * *
69050645 TGGCTGAT-ACATGTCCCAGACATGTCTTACACTAGCCCACA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACA
69050686 ATAACCCATA
Statistics
Matches: 186, Mismatches: 32, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
46 79 0.42
47 79 0.42
48 27 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCGA
Found at i:69050559 original size:46 final size:47
Alignment explanation
Indices: 69050412--69050680 Score: 223
Period size: 47 Copynumber: 5.7 Consensus size: 47
69050402 TGGGTAAGGT
* * *
69050412 GCCGATGCCATGTCCCAGACACAGTCTTACACTAGCTCACATCTC-AT
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTTACATCTCGAG
* * * *
69050459 GTCGATGCCATGTCCCAAACATGGTCATACACTGGC-TATCATCTCGTA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTA-CATCTCG-AG
*
69050507 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* * * * *
69050553 GTCGATG-AATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCGAG
* * * * *
69050599 GCCAATGCCATGTCCCAGATATGGTCTTACACTGGCTCT-CATAAT-GTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAG
* *
69050647 GCTGAT-ACATGTCCCAGACATGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
69050681 CCACAATAAC
Statistics
Matches: 181, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 75 0.41
47 77 0.43
48 26 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:69050623 original size:140 final size:140
Alignment explanation
Indices: 69050421--69050680 Score: 362
Period size: 140 Copynumber: 1.9 Consensus size: 140
69050411 TGCCGATGCC
* * *
69050421 ATGTCCCAGACACAGTCTTACACTAGCTCACATCTCATGTCGATGCCATGTCCCAAACATGGTCA
1 ATGTCCCAGACACAGTCTTACACTAGCACACATCTCATGCCAATGCCATGTCCCAAACATGGTCA
* *
69050486 TACACTGGCTATCAT-CTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTC
66 TACACTGGCTATCATAAT-GTAGCCGATACATGTCCCAGACATGTCTTACACTAGCTTACGTCTC
69050550 GAGGTCGATGA
130 GAGGTCGATGA
* * * * *
69050561 ATGTCCCAGACA-TGTCTTACACTAGCACTCGTCTCGATGCCAATGCCATGTCCCAGATATGGTC
1 ATGTCCCAGACACAGTCTTACACTAGCACACATCTC-ATGCCAATGCCATGTCCCAAACATGGTC
* * * *
69050625 TTACACTGGCTCTCATAATGTGGCTGATACATGTCCCAGACATGTCTTACACTAGC
65 ATACACTGGCTATCATAATGTAGCCGATACATGTCCCAGACATGTCTTACACTAGC
69050681 CCACAATAAC
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
139 19 0.18
140 84 0.81
141 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (140 bp):
ATGTCCCAGACACAGTCTTACACTAGCACACATCTCATGCCAATGCCATGTCCCAAACATGGTCA
TACACTGGCTATCATAATGTAGCCGATACATGTCCCAGACATGTCTTACACTAGCTTACGTCTCG
AGGTCGATGA
Found at i:69053912 original size:40 final size:40
Alignment explanation
Indices: 69053860--69054051 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
69053850 TATTACCACA
* * * * *
69053860 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
69053900 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
69053940 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
69053980 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
69054020 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
69054052 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:69062323 original size:79 final size:80
Alignment explanation
Indices: 69062216--69062404 Score: 231
Period size: 79 Copynumber: 2.4 Consensus size: 80
69062206 TATTACCACA
* * * * * *
69062216 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTCGCACGAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGC-ACTAGCACAAATGCCTTCGGGACTTAG
*
69062280 -CCGGAT-ATATCAACT
65 CCCGGATCAAATC-ACT
* * * *
69062295 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTTGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGCACTAGCACAAATGCCTTCGGGACTTAGC
69062360 CCGGATCAAATCACT
66 CCGGATCAAATCACT
*
69062375 AGCACAAATGCCTTCGGGACTTAGCCCGGA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA
69062405 TCTCATTCAA
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 49 0.52
80 41 0.44
81 4 0.04
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGCACTAGCACAAATGCCTTCGGGACTTAGC
CCGGATCAAATCACT
Found at i:69062405 original size:40 final size:41
Alignment explanation
Indices: 69062216--69062406 Score: 239
Period size: 40 Copynumber: 4.8 Consensus size: 41
69062206 TATTACCACA
* * * * *
69062216 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCAACT
* * *
69062256 CGCACGAATGCCTTCGGGTCTTAG-CCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCAACT
*
69062295 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCAACT
* *
69062335 AGCACAAATGCCTTTGGGACTTAGCCCGGATCAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCAACT
*
69062375 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
69062407 TCATTCAAAT
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 35 0.26
40 97 0.71
41 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCAACT
Found at i:69080879 original size:46 final size:46
Alignment explanation
Indices: 69080819--69081138 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
69080809 TTTGACATGA
* * * * *
69080819 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
69080865 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
69080911 TGCCATGGTATCTTTCGTCCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
69080957 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
69081003 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
69081049 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
69081095 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
69081139 AGAGCACACT
Statistics
Matches: 254, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 250 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:69086322 original size:49 final size:49
Alignment explanation
Indices: 69086244--69086427 Score: 242
Period size: 49 Copynumber: 3.7 Consensus size: 49
69086234 GTCACGTGTA
* * *
69086244 TAGTACTAAGTGCAGGCCACTACGTGTACCGGATAATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCATGTG
* * * * * *
69086293 TAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-TGGTCGCATGTG
* *
69086344 TAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCATGTG
*
69086393 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
69086428 GCTTCGGCTA
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 72 0.63
50 2 0.02
51 40 0.35
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCGCATGTG
Found at i:69086408 original size:100 final size:100
Alignment explanation
Indices: 69086235--69086422 Score: 340
Period size: 100 Copynumber: 1.9 Consensus size: 100
69086225 TATTGTGAGG
*
69086235 TCACGTGTATAGTACTAAGTGCAGGCCACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTATAGTACTAAGTGCAGGCCACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
69086300 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* * *
69086335 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTATAGTACTAAGTGCAGGCCACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
69086400 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
69086423 AGATAGCTTC
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTATAGTACTAAGTGCAGGCCACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:69087804 original size:42 final size:43
Alignment explanation
Indices: 69087758--69087854 Score: 101
Period size: 43 Copynumber: 2.3 Consensus size: 43
69087748 TGTTACATCT
* * **
69087758 GGACATTGGCATCG-TATCTG-ATTTCGTGTAAGACC-CTGTCTG
1 GGACATTGGCATCGATA-CTGAATTACATGTAAGACCAC-GTCCA
**
69087800 GGACAGAGGCATCGATACTGAATTACATGTAAGACCACGTCCA
1 GGACATTGGCATCGATACTGAATTACATGTAAGACCACGTCCA
69087843 GGACATTGGCAT
1 GGACATTGGCAT
69087855 TGTACCCGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
42 15 0.34
43 28 0.64
44 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
GGACATTGGCATCGATACTGAATTACATGTAAGACCACGTCCA
Found at i:69092676 original size:49 final size:49
Alignment explanation
Indices: 69092623--69092804 Score: 220
Period size: 49 Copynumber: 3.7 Consensus size: 49
69092613 CTGGTACGCA
*
69092623 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * *
69092672 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
* *
69092723 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * *
69092772 TAGTAGTCGGCATTTAGTACTACGCATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC
69092805 TCACAGTAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 65 0.59
50 6 0.05
51 40 0.36
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:69092750 original size:100 final size:100
Alignment explanation
Indices: 69092610--69092794 Score: 307
Period size: 100 Copynumber: 1.9 Consensus size: 100
69092600 TAGCCAAAGC
* * * *
69092610 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCAGTACACGTAG
*
69092675 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCGGCACTTAGTACTACACACGTGATCGAAGT
69092710 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCAGTACACGTAG
* *
69092775 TAGTCGGCATTTAGTACTAC
66 TAGCCGGCACTTAGTACTAC
69092795 GCATGTGACC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCAGTACACGTAG
TAGCCGGCACTTAGTACTACACACGTGATCGAAGT
Found at i:69094576 original size:14 final size:14
Alignment explanation
Indices: 69094569--69094596 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69094559 AAAAGTTTAG
69094569 GGGCAAAATTATAA
1 GGGCAAAATTATAA
69094583 GGGCAAAATTATAA
1 GGGCAAAATTATAA
69094597 TTTTGCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
GGGCAAAATTATAA
Found at i:69095393 original size:68 final size:65
Alignment explanation
Indices: 69095321--69095487 Score: 167
Period size: 67 Copynumber: 2.5 Consensus size: 65
69095311 CATCATGTGT
* * *
69095321 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTACGT-GTACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCACGTAGGACACCAT
69095385 GTAG
62 GTAG
** * * *
69095389 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCACGT--AGGACACCATGT
69095454 AG
64 AG
* * *
69095456 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTC
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTC
69095488 AGATGGGTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
64 26 0.31
65 3 0.04
66 11 0.13
67 32 0.38
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCACGTAGGACACCATGTAG
Found at i:69095426 original size:64 final size:63
Alignment explanation
Indices: 69095277--69095528 Score: 197
Period size: 68 Copynumber: 3.8 Consensus size: 63
69095267 TACAGATAGT
* ** * * * *
69095277 ATGTAGCTAGGTCACATGTATGGTGCTTAGTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTAC-TAGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
*
69095341 TATG
61 TA-A
* * *
69095345 ATGTAGCTAGGTCGCATGGGTGATACTACGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
69095409 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GT---GTACACCATGTAGACAAGAGAGCTACGAGAT
69095474 AA
62 AA
* *
69095476 AT-TGGCTAGGTCAG-ATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTC-GCATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGC
69095529 CGAACTATAT
Statistics
Matches: 152, Mismatches: 24, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 26 0.17
65 2 0.01
66 22 0.14
67 36 0.24
68 45 0.30
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69099675 original size:22 final size:22
Alignment explanation
Indices: 69099650--69099695 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
69099640 ATTCATATTG
69099650 ATTTTACACTCATTTTCTGGTT
1 ATTTTACACTCATTTTCTGGTT
69099672 ATTTTACACTCATTTTCTGGTT
1 ATTTTACACTCATTTTCTGGTT
69099694 AT
1 AT
69099696 CTAATTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (22 bp):
ATTTTACACTCATTTTCTGGTT
Found at i:69099748 original size:24 final size:25
Alignment explanation
Indices: 69099721--69099769 Score: 91
Period size: 24 Copynumber: 2.0 Consensus size: 25
69099711 GTACTTATAC
69099721 ATGTATTTCAATGTTTCCTA-ATAA
1 ATGTATTTCAATGTTTCCTAGATAA
69099745 ATGTATTTCAATGTTTCCTAGATAA
1 ATGTATTTCAATGTTTCCTAGATAA
69099770 TATTACTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (25 bp):
ATGTATTTCAATGTTTCCTAGATAA
Found at i:69101690 original size:49 final size:49
Alignment explanation
Indices: 69101628--69101860 Score: 218
Period size: 49 Copynumber: 4.7 Consensus size: 49
69101618 GCTATCTGGT
*
69101628 ATAGTAGCTTGCACTTAGTACTACACATGCG-CCCAATTATCTGGTACAC
1 ATAGTAGC-TGCACTTAGTACTACACACGCGACCCAATTATCTGGTACAC
* * ** *
69101677 ATAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACAC
1 ATAGTAG-CTGCACTTAGTACTACACACGCGACCCAATTATCTGGTACAC
* * * * * *
69101727 GTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGC
1 ATAGTAG-CTGCACTTAGTACTACACACGCGACCCAA-TTATCTGGTACAC
* * **
69101778 ATAGTAGCATGCTCTTAGTACTACACATGCGA-CCAATTATCCAGTACAC
1 ATAGTAGC-TGCACTTAGTACTACACACGCGACCCAATTATCTGGTACAC
* * * *
69101827 GTAGTAGCCGACACTTAGTACTAGACACGAGACC
1 ATAGTAGCTG-CACTTAGTACTACACACGCGACC
69101861 TCACAATAGA
Statistics
Matches: 149, Mismatches: 29, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 61 0.41
50 53 0.36
51 34 0.23
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
ATAGTAGCTGCACTTAGTACTACACACGCGACCCAATTATCTGGTACAC
Found at i:69104122 original size:42 final size:43
Alignment explanation
Indices: 69104008--69104122 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 43
69103998 TTGAGATATT
*
69104008 GTGTAAGACCATGTCTGGGACACAGGCCTCGACTTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACACAGGCATCGACTT-AGATTTAC
*
69104052 GTTTAAGACCATGTCTGGGACATC-GGCATCGTA-TCT-GATTT-C
1 GTGTAAGACCATGTCTGGGACA-CAGGCATCG-ACT-TAGATTTAC
* *
69104094 GTGTAAGACCCTGTCTGGGACAGAGGCAT
1 GTGTAAGACCATGTCTGGGACACAGGCAT
69104123 TGATATTGAA
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
42 26 0.42
43 5 0.08
44 28 0.45
45 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACACAGGCATCGACTTAGATTTAC
Found at i:69110614 original size:6 final size:6
Alignment explanation
Indices: 69110596--69110686 Score: 80
Period size: 6 Copynumber: 14.8 Consensus size: 6
69110586 AAGAAACATT
* *
69110596 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
69110645 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAG
69110687 TATTAGGTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:69110641 original size:31 final size:31
Alignment explanation
Indices: 69110605--69110702 Score: 160
Period size: 31 Copynumber: 3.2 Consensus size: 31
69110595 TATCAGAACT
* *
69110605 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGTATTAGGTAAC
*
69110636 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGTATTAGGTAAC
*
69110667 AGAATCAAAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGTATTAGGTAAC
69110698 AGAAT
1 AGAAT
69110703 AAAAAATCAG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGTATTAGGTAAC
Found at i:69110894 original size:27 final size:26
Alignment explanation
Indices: 69110852--69110953 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
69110842 GCTTAGTTAT
* *
69110852 CAGATATTATGACAGAGTCACCAGATA
1 CAGATATTATGGCAGAGCCACCAGA-A
*
69110879 CAGATATTCTGGCAGAGCCACCAGAA
1 CAGATATTATGGCAGAGCCACCAGAA
* *
69110905 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTATGGCAGAGCCACCAG-AA
* * *
69110933 CAGATAATGTGGCAAAGCCAC
1 CAGATATTATGGCAGAGCCAC
69110954 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGATATTATGGCAGAGCCACCAGAA
Found at i:69111140 original size:22 final size:23
Alignment explanation
Indices: 69111112--69111173 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
69111102 GCAAATACGT
*
69111112 TTGGCACATAGCCATAAT-CAGG
1 TTGGCACAAAGCCATAATGCAGG
* *
69111134 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGCAGG
*
69111156 TTGACACAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
69111174 TAGAAGGCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGCAGG
Found at i:69111659 original size:27 final size:27
Alignment explanation
Indices: 69111603--69111770 Score: 173
Period size: 27 Copynumber: 6.3 Consensus size: 27
69111593 GAGGCAAAAT
* * * *
69111603 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
69111629 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69111656 GGTAATTCTACCCTAAAAGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69111682 TGGTAATTCTATCTTACAGGGGTATTT-
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
69111709 GAGTAATTCTACCCTATAGGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
* *
69111737 GAG-ATTTCTACCCTACAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
69111764 GGTAATT
1 GGTAATT
69111771 TTGTAAATCG
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 19 0.16
27 93 0.79
28 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69111784 original size:27 final size:26
Alignment explanation
Indices: 69111752--69112047 Score: 89
Period size: 27 Copynumber: 11.0 Consensus size: 26
69111742 TTCTACCCTA
69111752 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTT-GGTAATTTTGTAAAT
* ** *
69111779 CGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGT-ATTTGGTAATTTTGTAAAT
* ** *
69111806 CAATGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTA-TTTGGTAATTTTGTAAAT
** ** ** **
69111833 TGAGGGTATTTTAATAATTTTACAGGT
1 CAAGGGTA-TTTGGTAATTTTGTAAAT
* * ***
69111860 CTAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTT-GGTAATTTTGTAAAT
* **
69111887 -TAGGGATATTTTGGTAATTTTACAAA-
1 CAAGGG-TA-TTTGGTAATTTTGTAAAT
*
69111913 CAACGGGTATTTTGGTAATTTTATAAA-
1 CAA-GGGTA-TTTGGTAATTTTGTAAAT
* * ** *
69111940 CAAAAGGTATTTTAGTAATTTTACAAAC
1 C-AAGGGTA-TTTGGTAATTTTGTAAAT
* **
69111968 CAGGGGTATTTTGGTAATTTTACAAAAT
1 CAAGGGTA-TTTGGTAATTTT-GTAAAT
* *
69111996 -AGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTA-TTTGGTAATTTTGTAAAT
*
69112021 CAAAGGGTATTTTGGTAATTTGGTAAA
1 C-AAGGGTA-TTTGGTAATTTTGTAAA
69112048 CTAAAGTATT
Statistics
Matches: 214, Mismatches: 43, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 12 0.06
27 188 0.88
28 14 0.07
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.39
Consensus pattern (26 bp):
CAAGGGTATTTGGTAATTTTGTAAAT
Found at i:69111921 original size:54 final size:53
Alignment explanation
Indices: 69111810--69112041 Score: 232
Period size: 54 Copynumber: 4.3 Consensus size: 53
69111800 GTAAATCAAT
* ** ** ** *
69111810 GGTACTTTGGTAATTTTACAAGTTGAGGGTATTTTAATAATTTTACAGGTC-TAG
1 GGTATTTTGGTAATTTTACAAAAT-AGGGTATTTTGGTAATTTTACA-AACAAAG
** * * *
69111864 GGTATTTCAGTAATTTCACAAATTAGGGATATTTTGGTAATTTTACAAACAACG
1 GGTATTTTGGTAATTTTACAAAATAGGG-TATTTTGGTAATTTTACAAACAAAG
* * * * * *
69111918 GGTATTTTGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAA-ATAGGGTATTTTGGTAATTTTACAAACAAAG
*
69111972 GGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAAATA-GGGTATTTTGGTAATTTTACAAACAAAG
69112026 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
69112042 GGTAAACTAA
Statistics
Matches: 146, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
53 7 0.05
54 136 0.93
55 3 0.02
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (53 bp):
GGTATTTTGGTAATTTTACAAAATAGGGTATTTTGGTAATTTTACAAACAAAG
Found at i:69111921 original size:81 final size:81
Alignment explanation
Indices: 69111864--69112041 Score: 241
Period size: 81 Copynumber: 2.2 Consensus size: 81
69111854 ACAGGTCTAG
**
69111864 GGTATTTCAGTAATTTCACAAATTAGGGATATTTTGGTAATTTTACAAACA-ACGGGTATTTTGG
1 GGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAA-ATACGGGTATTTTGG
*
69111928 TAATTTTATAAACAAAA
65 TAATTTTACAAACAAAA
* * * *
69111945 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGT
1 GGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAAATACGGGTATTTTGGT
* *
69112010 AATTTTATAAACAAAG
66 AATTTTACAAACAAAA
**
69112026 GGTATTTTGGTAATTT
1 GGTATTTCAGTAATTT
69112042 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 87 0.99
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAACCAGGGATATTTTGGTAATTTTACAAAATACGGGTATTTTGGT
AATTTTACAAACAAAA
Found at i:69112048 original size:27 final size:27
Alignment explanation
Indices: 69111888--69112041 Score: 202
Period size: 27 Copynumber: 5.7 Consensus size: 27
69111878 TTCACAAATT
*
69111888 AGGGATATTTTGGTAATTTTACAAACAA
1 AGGG-TATTTTGGTAATTTTATAAACAA
*
69111916 CGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTATAAACAA
* * * *
69111943 AAGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACAA
* *
69111970 GGGGTATTTTGGTAATTTTACAAA-ATA
1 AGGGTATTTTGGTAATTTTATAAACA-A
*
69111997 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTATAAACAA
69112024 AGGGTATTTTGGTAATTT
1 AGGGTATTTTGGTAATTT
69112042 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.96
28 4 0.04
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACAA
Found at i:69113999 original size:6 final size:6
Alignment explanation
Indices: 69113981--69114046 Score: 55
Period size: 6 Copynumber: 10.8 Consensus size: 6
69113971 AAGAAACATT
* * *
69113981 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
69114030 ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAG
69114047 GTAACAGAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 2 0.04
6 42 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:69114012 original size:12 final size:12
Alignment explanation
Indices: 69113981--69114037 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
69113971 AAGAAACATT
*
69113981 ATCAGAACTAGA
1 ATCAGAATTAGA
69113993 ATCAGAATTAGA
1 ATCAGAATTAGA
69114005 ATCAGAATTAG-
1 ATCAGAATTAGA
* *
69114016 GTGACAGAATCAGA
1 AT--CAGAATTAGA
69114030 ATCAGAAT
1 ATCAGAAT
69114038 CAGTATCAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 1 0.03
12 28 0.74
13 8 0.21
14 1 0.03
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.21
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:69114028 original size:31 final size:31
Alignment explanation
Indices: 69113990--69114069 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
69113980 TATCAGAACT
* *
69113990 AGAATCAGAATTAGAATCAGAATTAGGTGAC
1 AGAATCAGAATTAGAATCAGAATCAGGTAAC
* *
69114021 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATTAGAATCAGAATCAGGTAAC
*
69114052 AGAATCAAAAATTAGAAT
1 AGAATC-AGAATTAGAAT
69114070 GTAAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 33 0.79
32 9 0.21
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATTAGAATCAGAATCAGGTAAC
Found at i:69114236 original size:27 final size:26
Alignment explanation
Indices: 69114206--69114307 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
69114196 GCTTAGTTAT
* *
69114206 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
69114233 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
69114259 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
69114287 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
69114308 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:69115016 original size:27 final size:27
Alignment explanation
Indices: 69114957--69115124 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
69114947 GGGGCAAAAT
* * * *
69114957 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69114983 AGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69115010 GGCAATTCTACCCTAAAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
69115036 TGGAAATTCTACCTTACAGGGGTATTT-
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
69115063 GAGTAATTCTACCCTACAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
* * *
69115091 GAG-ATTTCTACCCTATAAGGGTATTTC
1 G-GTAATTCTACCCTACAGGGGTATTTC
69115118 GGTAATT
1 GGTAATT
69115125 TTGTAAATCG
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
26 18 0.15
27 94 0.80
28 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:69115044 original size:54 final size:54
Alignment explanation
Indices: 69114957--69115124 Score: 175
Period size: 54 Copynumber: 3.1 Consensus size: 54
69114947 GGGGCAAAAT
* * * *
69114957 GGTAATTTTACCCCACAA-GGTATCTC-AGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGAG-AATTCTACCCTACAGGGGTATTTC
* * *
69115010 GGCAATTCTACCCTA-AAGGGGTATTCTGGA-AATTCTACCTTACAGGGGTATTT-
1 GGTAATTCTACCCTACAA-GGGTATT-TCGAGAATTCTACCCTACAGGGGTATTTC
* * *
69115063 GAGTAATTCTACCCTACAAGGGTATTTCGAGATTTCTACCCTATAAGGGTATTTC
1 G-GTAATTCTACCCTACAAGGGTATTTCGAGAATTCTACCCTACAGGGGTATTTC
69115118 GGTAATT
1 GGTAATT
69115125 TTGTAAATCG
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
52 2 0.02
53 16 0.17
54 71 0.76
55 4 0.04
56 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGAGAATTCTACCCTACAGGGGTATTTC
Found at i:69115138 original size:27 final size:27
Alignment explanation
Indices: 69115107--69115503 Score: 331
Period size: 27 Copynumber: 14.7 Consensus size: 27
69115097 TCTACCCTAT
* **
69115107 AAGGGTATTTCGGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *** * *
69115134 GAGGGTAAAATGGTAATTCTATAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
69115161 AAGGGTACTTTGGTAATTTTACAAGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *** **
69115188 CAGGGTATTTCAATAATTTTACAGGTC
1 AAGGGTATTTTGGTAATTTTACAAATC
* ** *
69115215 GAGGGTATTTCAGTAATTTCACAAAT-
1 AAGGGTATTTTGGTAATTTTACAAATC
*
69115241 TAGGGATATTTTGGTAATTTTACAAA-C
1 AAGGG-TATTTTGGTAATTTTACAAATC
* * *
69115268 TAGGGGTATTTTGATAATTTTA-AAAAC
1 -AAGGGTATTTTGGTAATTTTACAAATC
69115295 TAAGGGTATTTTGGTAATTTTAC-AATCC
1 -AAGGGTATTTTGGTAATTTTACAAAT-C
* * *
69115323 AGGGGTATTTTGGTAATTTTATAAATA
1 AAGGGTATTTTGGTAATTTTACAAATC
* * *
69115350 AAAGGTATTTTAGTAATTTTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
69115377 AGGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
69115403 TAGGGGTATTTTGGTAATTTTATAAA-C
1 -AAGGGTATTTTGGTAATTTTACAAATC
*
69115430 AAAGGGTATTTTAGTAATTTTACAAA-C
1 -AAGGGTATTTTGGTAATTTTACAAATC
* ** *
69115457 TAGGGGTATTTTGGTAATTTTGTAAACC
1 -AAGGGTATTTTGGTAATTTTACAAATC
69115485 AAGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
69115504 GGTAAACTAA
Statistics
Matches: 303, Mismatches: 58, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
26 8 0.03
27 287 0.95
28 8 0.03
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:69115510 original size:81 final size:81
Alignment explanation
Indices: 69115144--69115503 Score: 377
Period size: 81 Copynumber: 4.4 Consensus size: 81
69115134 GAGGGTAAAA
* * * * * * * * *
69115144 TGGTAATTCTATAAATCAAGGGTACTTTGGTAATTTTACAAGTC-CAGGGTATTTCAATAATTTT
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAA-ACAAAGGGTATTTTAGTAATTTT
** *
69115208 AC-AGGTCGAGGGTATTT
65 ACAAACTAG-GGGTATTT
** * ** * * *
69115225 CAGTAATTTCACAAA-TTAGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTT
1 TGGTAATTTTACAAACCAAGGG-TATTTTGGTAATTTTATAAACAAAGGGTATTTTAG-TAATTT
* *
69115288 TAAAAACTAAGGGTATTT
64 TACAAACTAGGGGTATTT
* * * *
69115306 TGGTAATTTTACAATCCAGGGGTATTTTGGTAATTTTATAAATAAAAGGTATTTTAGTAATTTTA
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTA
*
69115371 CAAACCAGGGGTATTT
66 CAAACTAGGGGTATTT
* *
69115387 TGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTA
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTA
69115452 CAAACTAGGGGTATTT
66 CAAACTAGGGGTATTT
**
69115468 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTT
1 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTT
69115504 GGTAAACTAA
Statistics
Matches: 231, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
80 5 0.02
81 220 0.95
82 6 0.03
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (81 bp):
TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTA
CAAACTAGGGGTATTT
Found at i:69115512 original size:54 final size:54
Alignment explanation
Indices: 69115217--69115503 Score: 369
Period size: 54 Copynumber: 5.3 Consensus size: 54
69115207 TACAGGTCGA
** * * * *
69115217 GGGTATTTCAGTAATTTCACAAATTAGGGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* * * *
69115271 GGGTATTTTGATAATTTTAAAAACTAAGGGTATTTTGGTAATTTTACAATCCAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* ** *
69115325 GGGTATTTTGGTAATTTTATAAA-TAAAAGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAG
* * *
69115379 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* ** *
69115433 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
69115487 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
69115504 GGTAAACTAA
Statistics
Matches: 205, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
53 1 0.00
54 203 0.99
55 1 0.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
Found at i:69122281 original size:26 final size:27
Alignment explanation
Indices: 69122243--69122293 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
69122233 TAACGCCCCA
*
69122243 ATTTTCAAGTTTTCTGTGT-TTCTGTG
1 ATTTTCAAATTTTCTGTGTGTTCTGTG
* *
69122269 ATTTTTAAATTTTTTGTGTGTTCTG
1 ATTTTCAAATTTTCTGTGTGTTCTG
69122294 GTTGGTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.14, C:0.08, G:0.18, T:0.61
Consensus pattern (27 bp):
ATTTTCAAATTTTCTGTGTGTTCTGTG
Found at i:69133486 original size:46 final size:44
Alignment explanation
Indices: 69133433--69133747 Score: 147
Period size: 48 Copynumber: 6.7 Consensus size: 44
69133423 GACTAGAGCT
*
69133433 AGTGTAAGACATGTCTGGGACATGCTTCAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAGATGT--GCC
* * * * *
69133479 AGTGTAAGACATGTTTAGGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGCC
* * *
69133523 AGGGTAAGACCATGTCTGGGACATGGCATCG-GTACGTATAGA-GCTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTACG---AGATG-TGCC
* * * *
69133571 AGTGTAAGACCATGTCTGGGACATGGCATCG-GTATGGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTA-CGAGATGT----GCC
** *
69133621 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCTACGAGAT-G-T-GCC
* ** * *
69133670 AGTGTAAGACCATGTCTCGGACATGGCATCAACT-TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTACGA--GATGTGCC
69133717 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
69133748 GCATTATACC
Statistics
Matches: 219, Mismatches: 31, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
44 10 0.05
45 18 0.08
46 41 0.19
47 33 0.15
48 44 0.20
49 33 0.15
50 36 0.16
51 2 0.01
52 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGCC
Found at i:69133579 original size:48 final size:47
Alignment explanation
Indices: 69133478--69133748 Score: 229
Period size: 48 Copynumber: 5.7 Consensus size: 47
69133468 AGATGTAAGC
* *
69133478 CAGTGTAAGA-CATGTTTAGGACAT-GCATCGG--C-TATGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGTAT-AGA-GTGT
*
69133522 CAGGGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAGCTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAG-TGT
* * *
69133570 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTATGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CG-TAT-AGAGTGT
* *
69133619 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATTTCGA-TAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGG--TACG-TATAGAGT-GT
* * * * * *
69133669 CAGTGTAAGACCATGTCTCGGACATGGCATC--AACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGT-ATAGA-GTGT
69133716 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
69133749 CATTATACCC
Statistics
Matches: 188, Mismatches: 19, Indels: 35
0.78 0.08 0.14
Matches are distributed among these distances:
44 9 0.05
45 13 0.07
46 11 0.06
47 32 0.17
48 41 0.22
49 37 0.20
50 41 0.22
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAGTGT
Found at i:69133638 original size:98 final size:95
Alignment explanation
Indices: 69133428--69133749 Score: 283
Period size: 96 Copynumber: 3.4 Consensus size: 95
69133418 ATTGAGACTA
* * * * *
69133428 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCTTCAGCCTCGAGAT-G-TAAGCCAGTGTAAGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTCGATATAGAT-AGTCAGTGTAAGAC
* * **
69133488 CATGTTTAGGACAT-GCATCGGCT--ATGAGAT
64 CATGTCTCGGACATGGCATCAACTGGATG-GAT
* * *
69133518 GTGTCAGGGTAAGACCATGTCTGGGACATGGCATCGG-TACG-TATAGAGCT-GTCAGTGTAAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGATATAGA--TAGTCAGTGTAAGA
* *
69133580 CCATGTCTGGGACATGGCATCGGTA-TGGATATGTGA-
63 CCATGTCTCGGACATGGCATC--AACTGG--ATG-GAT
* * *
69133616 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGATAGTCAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGATATAGATAGTCAGTGTAAGACC
*
69133681 ATGTCTCGGACATGGCATCAACTTGATGGAT
65 ATGTCTCGGACATGGCATCAACTGGATGGAT
69133712 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
69133750 ATTATACCCT
Statistics
Matches: 188, Mismatches: 23, Indels: 37
0.76 0.09 0.15
Matches are distributed among these distances:
90 13 0.07
91 18 0.10
92 15 0.08
93 12 0.06
94 6 0.03
95 4 0.02
96 39 0.21
97 1 0.01
98 36 0.19
99 39 0.21
100 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (95 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATATAGATAGTCAGTGTAAGACCA
TGTCTCGGACATGGCATCAACTGGATGGAT
Found at i:69133741 original size:194 final size:187
Alignment explanation
Indices: 69133386--69133748 Score: 453
Period size: 194 Copynumber: 1.9 Consensus size: 187
69133376 TGAAATCCAA
* *
69133386 TGTAAGACCATGTCTGAGACAATGGCATTGGCATTGAGACTAGAGCTAGTGTAAGACATGTCTGG
1 TGTAAGACCATGTCTGAGACAATGGCATCGGCATGGAGACTAGAGCTAGTGTAAGACATGTCTGG
* * **
69133451 GACATGCTTCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTTTAGGACATGCATCGGCTATGAG
66 GACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTAGGACATGCATCAACTATGAG
* *
69133516 ATGTGTCAGGGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAGCTGTCAG
131 ATGAGCCAGGGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAGCTGTCAG
* * * *
69133573 TGTAAGACCATGTCTGGGAC-ATGGCATCGGTATGGATATGTGAGAGCTAGTGTAAGACCATGTC
1 TGTAAGACCATGTCTGAGACAATGGCATCGGCATGGAGA-CT-AGAGCTAGTGTAAGA-CATGTC
* ** * *
69133637 TGGGACATGGCATCGGCCTCGATTTCG-ATAGTCAGTGTAAGACCATGTCTCGGACATGGCATCA
63 TGGGACAT-GCATCAGCCTCGAGAT-GTA-AGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCA
*
69133701 ACT-TGATGGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
123 ACTATGA--GATGAGCCAGGGTAAGACCATGTCTGGGACATGGCATCGG
69133749 CATTATACCC
Statistics
Matches: 148, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
186 14 0.09
187 20 0.14
188 15 0.10
189 14 0.09
190 13 0.09
191 13 0.09
192 15 0.10
193 7 0.05
194 37 0.25
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.25
Consensus pattern (187 bp):
TGTAAGACCATGTCTGAGACAATGGCATCGGCATGGAGACTAGAGCTAGTGTAAGACATGTCTGG
GACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATGTCTAGGACATGCATCAACTATGAG
ATGAGCCAGGGTAAGACCATGTCTGGGACATGGCATCGGTACGTATAGAGCTGTCAG
Found at i:69133748 original size:96 final size:96
Alignment explanation
Indices: 69133342--69133749 Score: 300
Period size: 95 Copynumber: 4.3 Consensus size: 96
69133332 TGTGCTAGTA
* * *
69133342 TAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGA-AATCCAATGTAAGACCATGTCT-G
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TATGATAGT-CAGTGTAAGACCATGTCTAG
*** * *
69133402 AGACAATGGCATTGGCATTGA-GA-CTAGAGCTAGTG
64 -GAC-ATGGCATCAAC-TTGATGAGAT-GAGCCAGTG
* * * * *
69133437 TAAGA-CATGTCTGGGACAT-GCTTCAGCCTCGAGATG-TAAGCCAGTGTAAGA-CATGTTTAGG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAT-AGTCAGTGTAAGACCATGTCTAGG
** * * *
69133498 ACAT-GCATCGGC-T-ATGAGATGTGTCAGGG
65 ACATGGCATCAACTTGATGAGATGAGCCAGTG
69133527 TAAGACCATGTCTGGGACATGGCATCGG--TACG-TATAGAGCT-GTCAGTGTAAGACCATGTCT
1 TAAGACCATGTCTGGGACATGGCATCGGCCT-CGATAT-GA--TAGTCAGTGTAAGACCATGTCT
* * * * *
69133588 GGGACATGGCATCGGTA-TGGATATGTGA-GAGCTAGTG
62 AGGACATGGCATC--AACTTG--ATGAGATGAGCCAGTG
* *
69133625 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCGATAGTCAGTGTAAGACCATGTCTCGG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATAT-GATAGTCAGTGTAAGACCATGTCTAGG
69133690 ACATGGCATCAACTTGATG-GATGAGCCAGTG
65 ACATGGCATCAACTTGATGAGATGAGCCAGTG
69133721 TAAGACCATGTCTGGGACATGGCATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
69133750 ATTATACCCT
Statistics
Matches: 252, Mismatches: 34, Indels: 53
0.74 0.10 0.16
Matches are distributed among these distances:
89 1 0.00
90 16 0.06
91 18 0.07
92 23 0.09
93 14 0.06
94 15 0.06
95 42 0.17
96 42 0.17
97 1 0.00
98 36 0.14
99 39 0.15
100 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGATAGTCAGTGTAAGACCATGTCTAGGA
CATGGCATCAACTTGATGAGATGAGCCAGTG
Found at i:69137398 original size:46 final size:46
Alignment explanation
Indices: 69137331--69137505 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69137321 TGTAACCCGC
*
69137331 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
69137377 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * ** *
69137427 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
69137470 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
69137506 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:69137454 original size:93 final size:93
Alignment explanation
Indices: 69137339--69137509 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69137329 GCCCATAAGT
** *
69137339 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
69137404 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
69137432 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
*
69137497 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69137510 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:69138098 original size:20 final size:18
Alignment explanation
Indices: 69138064--69138100 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
69138054 GAAACTCATA
69138064 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
69138082 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
69138101 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:69140943 original size:46 final size:44
Alignment explanation
Indices: 69140909--69141075 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 44
69140899 TAACCGTGCT
69140909 GACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCC
1 GACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCC
* * *
69140953 GACGCATGTCCCAGACATGTCTGACATTGGCTAACATCTCG-AGGCC
1 GACGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCC
* * * * **
69140999 GATGCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGTT
1 GACGCATGTCCCAGACATGTCTTACACTAGCACATC-T-C-GTAGCC
*
69141045 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GACGCATGTCCCAGACATGTCTTACACTAGC
69141076 CCTCGTCTCA
Statistics
Matches: 105, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
43 2 0.02
44 30 0.29
45 2 0.02
46 71 0.68
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (44 bp):
GACGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCC
Found at i:69141093 original size:92 final size:90
Alignment explanation
Indices: 69140912--69141126 Score: 207
Period size: 92 Copynumber: 2.3 Consensus size: 90
69140902 CCGTGCTGAC
*
69140912 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTGA
1 GCATGTCCCAGACATGTCTTACACTGGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTGA
* * * *
69140977 CATTGGCTAACATCTCGAGGCCGAT
66 CACTAGCCAACATCTCAAGGCCGAT
* * ** *
69141002 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGTTGATGCATGTCCCAGACATGTC
1 GCATGTCCCAGACATGTCTTACACTGGCACATC-T-C-GTAGCCGACGCATGTCCCAGACATGTC
* ** * *
69141066 TTACACTAGCCCTCGTCTCAATGCCGAT
63 TGACACTAGCCAACATCTCAAGGCCGAT
* * * *
69141094 GCCATGTCTCATACATGGTATTACACTGACACA
1 G-CATGTCCCAGACAT-GTCTTACACTGGCACA
69141127 CAAATCTCAT
Statistics
Matches: 99, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
89 2 0.02
90 29 0.29
91 1 0.01
92 43 0.43
93 12 0.12
94 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (90 bp):
GCATGTCCCAGACATGTCTTACACTGGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCTGA
CACTAGCCAACATCTCAAGGCCGAT
Found at i:69141095 original size:46 final size:44
Alignment explanation
Indices: 69140912--69141120 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 44
69140902 CCGTGCTGAC
*
69140912 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * * * *
69140956 GCATGTCCCAGACATGTCTGACATTGGCTAACATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * **
69141002 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGTTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
69141048 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
69141094 GCCATGTCTCATACATGGTATTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
69141121 GACACACAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 20
0.76 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 27 0.21
45 4 0.03
46 73 0.56
47 15 0.11
48 9 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:69143920 original size:46 final size:46
Alignment explanation
Indices: 69143853--69144027 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
69143843 TGTAACCCGC
* * *
69143853 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
69143899 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * ** * *
69143949 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
69143992 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
69144028 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.58
47 27 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:69143966 original size:93 final size:93
Alignment explanation
Indices: 69143861--69144031 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
69143851 GCCCATAAGT
** * *
69143861 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGCGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
69143926 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
69143954 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
*
69144019 CGAGTTCGGATGC
66 CGAGCTCGGATGC
69144032 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:69144047 original size:46 final size:45
Alignment explanation
Indices: 69143858--69144047 Score: 113
Period size: 46 Copynumber: 4.1 Consensus size: 45
69143848 CCCGCCCATA
* * ** * * *
69143858 AGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CT-CAACCATCT
* *
69143904 AGCGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
69143951 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGT-ATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-TCAACCATCT
69143997 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
69144043 AGTGA
1 AGTGA
69144048 CATGTCACTT
Statistics
Matches: 112, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
43 2 0.02
44 9 0.08
45 1 0.01
46 65 0.58
47 30 0.27
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:69144620 original size:20 final size:18
Alignment explanation
Indices: 69144586--69144622 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
69144576 GCAACTCATA
69144586 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
69144604 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
69144623 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:69150362 original size:46 final size:46
Alignment explanation
Indices: 69150146--69150395 Score: 153
Period size: 46 Copynumber: 5.4 Consensus size: 46
69150136 ATTTGTGTGC
* * * *
69150146 CAGTGTAAGA-CATGTATGAGACATGCATCGGCCACATCATGA-GA-GT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGG-C-TATGA-GACGATGT
* *
69150192 CAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ATTGAGACGA-GAG
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-TGAGACGATG-T
* * * * * *
69150239 CTAGTGTAAGA-CATGTTTGGGACATGCATCAGCCT-CGAGATGTAAGC
1 C-AGTGTAAGACCATGTCTGGGACATGCATC-GGCTATGAGACG-ATGT
* * * * *
69150286 CAATGTAACA-CATGTCTTGTACATGCATCGGCTATGAGA-TATGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGACGATGT
69150330 CAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGTAT-AGA-GATGT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGG--C-TATGAGACGATGT
69150378 CAGTGTAAGACCATGTCT
1 CAGTGTAAGACCATGTCT
69150396 AGGTGATAAA
Statistics
Matches: 162, Mismatches: 26, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
44 10 0.06
45 18 0.11
46 59 0.36
47 30 0.19
48 42 0.26
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCTATGAGACGATGT
Found at i:69163823 original size:46 final size:46
Alignment explanation
Indices: 69163773--69163948 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
69163763 TGGTTGAGCA
69163773 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
** * *
69163819 TCCGAACTCGTTGAGTTGAGTTTGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69163864 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69163912 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69163949 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69163939 original size:93 final size:93
Alignment explanation
Indices: 69163770--69163940 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69163760 GGATGGTTGA
*
69163770 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
**
69163835 TGAGTTTGAGTTCATGAGATGTAACTAG
66 TGAGTCCGAGTTCATGAGATGTAACTAG
*
69163863 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
69163927 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
69163941 GCTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAGATGTAACTAG
Found at i:69170531 original size:27 final size:27
Alignment explanation
Indices: 69170500--69170678 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69170490 TAAATTGTAC
*
69170500 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
69170527 TGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGAATTGACTATG-T
* * *
69170555 TGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
69170582 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
69170609 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
69170637 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
69170664 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69170679 GACTTAATAT
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
27 83 0.63
28 49 0.37
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:69170562 original size:55 final size:55
Alignment explanation
Indices: 69170500--69170678 Score: 227
Period size: 55 Copynumber: 3.3 Consensus size: 55
69170490 TAAATTGTAC
* **
69170500 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * * ** *
69170555 TGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
69170609 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
69170664 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69170679 GACTTAATAT
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
54 16 0.15
55 90 0.85
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:69170642 original size:82 final size:82
Alignment explanation
Indices: 69170501--69170657 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 82
69170491 AAATTGTACA
* * *
69170501 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATTGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATAGCACTAAGTG
69170566 TGCGAATTGACCATGCG
66 TGCGAATTGACCATGCG
** *
69170583 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TAGCACTAAGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATAGCACTAAGT
*
69170647 GTGCGAGTTGA
65 GTGCGAATTGA
69170658 TTATATAGCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
82 60 0.90
83 7 0.10
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (82 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATAGCACTAAGTG
TGCGAATTGACCATGCG
Found at i:69170669 original size:82 final size:82
Alignment explanation
Indices: 69170497--69170678 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 82
69170487 GATTAAATTG
* * *
69170497 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATTGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATAGCACTA
69170562 AGTGTGCGAATTGACCA
66 AGTGTGCGAATTGACCA
* * ** *
69170579 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATAGCACT
* **
69170643 AAGTGTGCGAGTTGATTA
65 AAGTGTGCGAATTGACCA
* *
69170661 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69170679 GACTTAATAT
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
82 77 0.92
83 7 0.08
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (82 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATAGCACTA
AGTGTGCGAATTGACCA
Found at i:69174361 original size:26 final size:27
Alignment explanation
Indices: 69174308--69174364 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
69174298 ATTGATGATC
69174308 TGTTCGATCAATTAAAGGGAGCATCGG
1 TGTTCGATCAATTAAAGGGAGCATCGG
69174335 TGTTCGATCAATTAAA-GGAGCATCGG
1 TGTTCGATCAATTAAAGGGAGCATCGG
69174361 TGTT
1 TGTT
69174365 TTCAAAGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
TGTTCGATCAATTAAAGGGAGCATCGG
Found at i:69178514 original size:27 final size:27
Alignment explanation
Indices: 69178483--69178660 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69178473 TAAATTGTAC
*
69178483 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
69178510 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
69178536 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
69178564 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
69178591 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
69178619 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
69178646 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69178661 GACTTAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 25 0.19
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:69178544 original size:54 final size:55
Alignment explanation
Indices: 69178483--69178660 Score: 227
Period size: 54 Copynumber: 3.3 Consensus size: 55
69178473 TAAATTGTAC
* **
69178483 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
69178538 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* *
69178591 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
69178646 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69178661 GACTTAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 45 0.42
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:69185262 original size:15 final size:15
Alignment explanation
Indices: 69185242--69185271 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69185232 TCTGTTGTAC
69185242 GCAAGTAAAGATTAA
1 GCAAGTAAAGATTAA
*
69185257 GCAAGTAAAGGTTAA
1 GCAAGTAAAGATTAA
69185272 CTCTTTTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.23, T:0.20
Consensus pattern (15 bp):
GCAAGTAAAGATTAA
Found at i:69194001 original size:23 final size:22
Alignment explanation
Indices: 69193971--69194015 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
69193961 GGGCCTGATA
*
69193971 GGCCATATAAATGTGATTTGGGC
1 GGCCATATAAATGT-AATTGGGC
69193994 GGCCATATAAATGTAATTGGGC
1 GGCCATATAAATGTAATTGGGC
69194016 CTAGTGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (22 bp):
GGCCATATAAATGTAATTGGGC
Found at i:69197041 original size:37 final size:37
Alignment explanation
Indices: 69196991--69197062 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
69196981 AATTTGGTGC
69196991 GAATTACCTCGACTGTACCATATGGGAAAATACTAGT
1 GAATTACCTCGACTGTACCATATGGGAAAATACTAGT
69197028 GAATTACCTCGACTGTACCATATGGGAAAATACTA
1 GAATTACCTCGACTGTACCATATGGGAAAATACTA
69197063 AGTACCGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (37 bp):
GAATTACCTCGACTGTACCATATGGGAAAATACTAGT
Found at i:69199141 original size:13 final size:13
Alignment explanation
Indices: 69199123--69199156 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
69199113 TCTCAATGAA
69199123 AAAGGAAATAACC
1 AAAGGAAATAACC
69199136 AAAGGAAATAACC
1 AAAGGAAATAACC
69199149 AAAGGAAA
1 AAAGGAAA
69199157 ATGGCGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.65, C:0.12, G:0.18, T:0.06
Consensus pattern (13 bp):
AAAGGAAATAACC
Found at i:69200780 original size:13 final size:13
Alignment explanation
Indices: 69200762--69200811 Score: 91
Period size: 13 Copynumber: 3.8 Consensus size: 13
69200752 GCTCGGCAGG
69200762 GACACGCCCGTAT
1 GACACGCCCGTAT
69200775 GACACGCCCGTAT
1 GACACGCCCGTAT
*
69200788 GACGCGCCCGTAT
1 GACACGCCCGTAT
69200801 GACACGCCCGT
1 GACACGCCCGT
69200812 GTGCGATTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.20, C:0.40, G:0.26, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTAT
Found at i:69211369 original size:39 final size:39
Alignment explanation
Indices: 69211315--69211415 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 39
69211305 AACCCAAGTA
* *
69211315 CCTTCGGGAATTAG-CCGGATATAGCAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCAC-AATG
* * ** *
69211354 CCTTCGGGTCTTAGCCCGGATACAGTTACTGGCACAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAATG
69211393 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
69211416 CATCCGAATA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 37 0.71
40 15 0.29
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAATG
Done.