Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 207 of 362
Found at i:69953887 original size:47 final size:48
Alignment explanation
Indices: 69953818--69954046 Score: 174
Period size: 47 Copynumber: 4.9 Consensus size: 48
69953808 GGAGTAAGGT
* *
69953818 GTCGATGCCAAGTCCTAGACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
* * *
69953865 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATTTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AA
* ** * * * *
69953913 GCCGATG-CATGTCTTAGACAT-GTCTTACACTGGCTTAT-GTCTTGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAA
* * * * *
69953959 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCACCTCGA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
*
69954004 -TGCTGAT-CACATGTCCCATACATGGTCTTACACTGGCTC-TCAT
1 GT-C-GATGC-CATGTCCCAGACATGGTCTTACACTGGCTCATCAT
69954047 AATGTGGCTG
Statistics
Matches: 143, Mismatches: 29, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 51 0.36
47 66 0.46
48 23 0.16
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA
Found at i:69953963 original size:46 final size:44
Alignment explanation
Indices: 69953820--69954083 Score: 165
Period size: 47 Copynumber: 5.7 Consensus size: 44
69953810 AGTAAGGTGT
* * * *
69953820 CGATGCCAAGTCCTAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTATATCT--AGC
* *
69953867 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATTTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCT-T-ATATC-TAGC
** *
69953915 CGATGCATGTCTTAGACAT-GTCTTACACTGGCTTATGTCTTGAGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTATATC-T-A-GC
* * ** *
69953961 CGATGCATGTCCCAGACAT-GTCTTACACTAGCACTCACCTCGATGC
1 CGATGCATGTCCCAGACATGGTCTTACACT-G-GCTTATATCTA-GC
* * * * *
69954007 TGATCACATGTCCCATACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGAT-GCATGTCCCAGACATGGTCTTACACTGGCT-T-AT-ATCTAGC
* *
69954055 TGATGCATGTCCCAGGCAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
69954084 AGCTCACATT
Statistics
Matches: 173, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
44 5 0.03
45 2 0.01
46 60 0.35
47 71 0.41
48 29 0.17
49 5 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTATATCTAGC
Found at i:69962512 original size:32 final size:32
Alignment explanation
Indices: 69962471--69962549 Score: 131
Period size: 32 Copynumber: 2.5 Consensus size: 32
69962461 TGATATTGAA
* *
69962471 ATGGGCTAGGCCCAACTGATATTGGTTCTGAT
1 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
*
69962503 ATGGGCTAGGCCCAACTGATATTTATTCTGAG
1 ATGGGCTAGGCCCAACTGATATTGATTCTGAG
69962535 ATGGGCTAGGCCCAA
1 ATGGGCTAGGCCCAA
69962550 TTGAGACTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATATTGATTCTGAG
Found at i:69967324 original size:36 final size:36
Alignment explanation
Indices: 69967269--69967361 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 36
69967259 AATCCAATGT
* * * *
69967269 ACTGTCGTAACATGTATCATAAGATAGGTCCAGTGG
1 ACTGTCGTATCCTGAATCATAAGATAGGTCCAGCGG
* * * * *
69967305 ACTGTTGTATCTTGAATCATGAGGTAGGTCCTGCGG
1 ACTGTCGTATCCTGAATCATAAGATAGGTCCAGCGG
*
69967341 ATTGTCGTATCCTGAATCATA
1 ACTGTCGTATCCTGAATCATA
69967362 GGACAGCTTC
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (36 bp):
ACTGTCGTATCCTGAATCATAAGATAGGTCCAGCGG
Found at i:69969645 original size:43 final size:43
Alignment explanation
Indices: 69969597--69969693 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
69969587 TGTAATTATA
69969597 TGTAAGACCATGTCTGGGAAATTGGCATCATTATATGATTACG
1 TGTAAGACCATGTCTGGGAAATTGGCATCATTATATGATTACG
* * * *
69969640 TGTAAGACCATGTCTGGGACATTGGCATCGTTATTTGATTTCG
1 TGTAAGACCATGTCTGGGAAATTGGCATCATTATATGATTACG
*
69969683 AGTAAGACCAT
1 TGTAAGACCAT
69969694 AGCTGGGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGAAATTGGCATCATTATATGATTACG
Found at i:69971668 original size:46 final size:45
Alignment explanation
Indices: 69971618--69971793 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
69971608 TGTTTGGGCA
69971618 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
69971664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
69971711 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
69971757 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69971794 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69971773 original size:93 final size:93
Alignment explanation
Indices: 69971614--69971785 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
69971604 AGGATGTTTG
* *
69971614 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69971679 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
69971707 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
69971772 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69971786 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:69976987 original size:24 final size:24
Alignment explanation
Indices: 69976955--69977003 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69976945 ATATGTAATT
69976955 ATGTGAATTACTTGATGAGTATGA
1 ATGTGAATTACTTGATGAGTATGA
69976979 ATGTGAATTACTTGATGAGTATGA
1 ATGTGAATTACTTGATGAGTATGA
69977003 A
1 A
69977004 CTATCACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (24 bp):
ATGTGAATTACTTGATGAGTATGA
Found at i:69977181 original size:46 final size:46
Alignment explanation
Indices: 69977131--69977306 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
69977121 TGTTTGGGCA
69977131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
69977177 TCCGAACTCGTTCAGTTGAGTCTGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
69977222 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
69977270 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69977307 CCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 2 0.02
46 59 0.56
47 22 0.21
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69977287 original size:93 final size:93
Alignment explanation
Indices: 69977127--69977297 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
69977117 AGGATGTTTG
* *
69977127 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTCAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAG
*
69977192 TTGAGTCTGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTTGTGAGATGTAACTA
* * * *
69977220 GGCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAG
69977285 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
69977298 CACTTATGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAG
TTGAGTCCGAGTTTGTGAGATGTAACTA
Found at i:69984217 original size:24 final size:25
Alignment explanation
Indices: 69984190--69984244 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
69984180 TATAGAGTGT
*
69984190 ATCATGGAGAGATATT-AGGA-GAAA
1 ATCATGGACAGAT-TTAAGGAGGAAA
*
69984214 ATCAGGGACAGATTTAAGGAGGAAA
1 ATCATGGACAGATTTAAGGAGGAAA
69984239 AT-ATGG
1 ATCATGG
69984245 GATTTTATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 2 0.08
24 18 0.69
25 6 0.23
ACGTcount: A:0.44, C:0.05, G:0.31, T:0.20
Consensus pattern (25 bp):
ATCATGGACAGATTTAAGGAGGAAA
Found at i:69988365 original size:68 final size:68
Alignment explanation
Indices: 69988256--69988393 Score: 240
Period size: 68 Copynumber: 2.0 Consensus size: 68
69988246 TTTGATGAAT
*
69988256 AAATGAGTTAATTTTGAATGTATATACATAAAGAACGAAAGAAATTGGATTTAGATCGGGGAAAA
1 AAATGAGTTAATTTTGAATGTATATACATAAAGAACGAAAGAAATCGGATTTAGATCGGGGAAAA
69988321 TCA
66 TCA
* * *
69988324 AAATGAGTTAATTTTGAATGTATATAGATCAAGAACGAAAGAAATCGGATTTTGATCGGGGAAAA
1 AAATGAGTTAATTTTGAATGTATATACATAAAGAACGAAAGAAATCGGATTTAGATCGGGGAAAA
69988389 TCA
66 TCA
69988392 AA
1 AA
69988394 GGTTATCGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.28
Consensus pattern (68 bp):
AAATGAGTTAATTTTGAATGTATATACATAAAGAACGAAAGAAATCGGATTTAGATCGGGGAAAA
TCA
Found at i:69990588 original size:13 final size:13
Alignment explanation
Indices: 69990570--69990604 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
69990560 GTGCAGACTT
*
69990570 CACACGGCCTAGG
1 CACACGCCCTAGG
69990583 CACACGCCCTAGG
1 CACACGCCCTAGG
69990596 CACACGCCC
1 CACACGCCC
69990605 ATGTCCTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.23, C:0.49, G:0.23, T:0.06
Consensus pattern (13 bp):
CACACGCCCTAGG
Found at i:70001023 original size:23 final size:21
Alignment explanation
Indices: 70000966--70001016 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
70000956 CACATAAGTG
*
70000966 CCTGAAACAACACACAAGGTA
1 CCTGAAATAACACACAAGGTA
* *
70000987 CCTGATATAACACACGAGGTA
1 CCTGAAATAACACACAAGGTA
70001008 CCTGAAATA
1 CCTGAAATA
70001017 CGACACATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (21 bp):
CCTGAAATAACACACAAGGTA
Found at i:70001034 original size:23 final size:23
Alignment explanation
Indices: 70001008--70001056 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
70000998 ACACGAGGTA
70001008 CCTGAAATACGACACATAAAGTG
1 CCTGAAATACGACACATAAAGTG
* *
70001031 CCTGATATACGACACTTAAAGTG
1 CCTGAAATACGACACATAAAGTG
70001054 CCT
1 CCT
70001057 AATCGGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.22
Consensus pattern (23 bp):
CCTGAAATACGACACATAAAGTG
Found at i:70002360 original size:50 final size:50
Alignment explanation
Indices: 70002284--70002501 Score: 314
Period size: 50 Copynumber: 4.4 Consensus size: 50
70002274 ACCACTCATT
** * *
70002284 TGGCCGAATATGCAA-GATCAAGTATATCATCACATAAATACTTA-CTCATA
1 TGGCCGAATACACAAGGTTCAA-TATATCATCACATAAATACTTACCT-ACA
* * *
70002334 TGGCCAAATATACAAGGTTCAATATATCATCACATGAATACTTACCTACA
1 TGGCCGAATACACAAGGTTCAATATATCATCACATAAATACTTACCTACA
*
70002384 TGGCCGAATACACAAGGTTCAATACATCATCACATAAATACTTACCTACA
1 TGGCCGAATACACAAGGTTCAATATATCATCACATAAATACTTACCTACA
*
70002434 TGGTCGAATACACAAGGTTCAATATATCATCACATAAATACTTACCTACA
1 TGGCCGAATACACAAGGTTCAATATATCATCACATAAATACTTACCTACA
*
70002484 TGGCTGAATACACAAGGT
1 TGGCCGAATACACAAGGT
70002502 CATTTAGCTC
Statistics
Matches: 153, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
50 146 0.95
51 7 0.05
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (50 bp):
TGGCCGAATACACAAGGTTCAATATATCATCACATAAATACTTACCTACA
Found at i:70005044 original size:27 final size:27
Alignment explanation
Indices: 70005006--70005068 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
70004996 TCGGCGATCA
70005006 CTCTGAGTATTTATGAATTATCTCTTT
1 CTCTGAGTATTTATGAATTATCTCTTT
70005033 CTCTGAGTATTTATGAATTATCTCTTT
1 CTCTGAGTATTTATGAATTATCTCTTT
70005060 CTCT-AGTAT
1 CTCTGAGTAT
70005069 CACTCCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 5 0.14
27 31 0.86
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (27 bp):
CTCTGAGTATTTATGAATTATCTCTTT
Found at i:70008213 original size:48 final size:48
Alignment explanation
Indices: 70008138--70008762 Score: 1070
Period size: 48 Copynumber: 13.0 Consensus size: 48
70008128 CAAGATAAAT
70008138 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008186 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008234 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008282 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008330 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
70008378 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
70008426 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70008474 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008522 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70008570 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008618 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
70008666 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
70008714 ATATGTATATGTGGTAAAGCCGAAGGGGTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70008762 A
1 A
70008763 CGTGTGTATA
Statistics
Matches: 555, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 555 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:70009049 original size:37 final size:37
Alignment explanation
Indices: 70008904--70009048 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
70008894 GGAAATACAT
*
70008904 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
70008941 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
70008978 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
70009015 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
70009049 TCATCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:70011059 original size:4 final size:4
Alignment explanation
Indices: 70011050--70011091 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
70011040 GCTTCTGTTG
* *
70011050 TTCT TTCT TTCT TTCT TT-T TTCT TTAT TTAT TTCAT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC-T TTCT TT
70011092 TATTCTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 27 0.79
5 4 0.12
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:70011121 original size:3 final size:3
Alignment explanation
Indices: 70011113--70011144 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
70011103 TTTATTAACT
70011113 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
70011145 TATCTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:70011281 original size:20 final size:20
Alignment explanation
Indices: 70011258--70011295 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70011248 TAATTTAATA
70011258 TTTTAATATAA-TAAAAATCT
1 TTTTAAT-TAAGTAAAAATCT
*
70011278 TTTTACTTAAGTAAAAAT
1 TTTTAATTAAGTAAAAAT
70011296 TAATTAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTTAATTAAGTAAAAATCT
Found at i:70011425 original size:14 final size:15
Alignment explanation
Indices: 70011390--70011430 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
70011380 TTTATTTTTA
70011390 ATAATATATAATAATC
1 ATAAT-TATAATAATC
70011406 ATAATT-TAATAAT-
1 ATAATTATAATAATC
70011419 ATAAATTATAAT
1 AT-AATTATAAT
70011431 TTGATAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.09
14 11 0.48
15 5 0.22
16 5 0.22
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATTATAATAATC
Found at i:70011431 original size:20 final size:23
Alignment explanation
Indices: 70011386--70011432 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
70011376 TTAATTTATT
70011386 TTTAATAATATATAATAATCATAA
1 TTTAATAATATATAAT-ATCATAA
70011410 TTTAATAATATA-AAT-T-ATAA
1 TTTAATAATATATAATATCATAA
70011430 TTT
1 TTT
70011433 GATAGAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.30
21 1 0.04
23 3 0.13
24 12 0.52
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTAATAATATATAATATCATAA
Found at i:70011457 original size:16 final size:16
Alignment explanation
Indices: 70011412--70011461 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
70011402 AATCATAATT
*
70011412 TAATAAT-ATAAATTA
1 TAATAATGATAAATAA
*
70011427 TAAT-TTGATAGAATAA
1 TAATAATGATA-AATAA
70011443 TAATAATGATAAATAA
1 TAATAATGATAAATAA
70011459 TAA
1 TAA
70011462 ATATCTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 1 0.03
15 7 0.24
16 16 0.55
17 5 0.17
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (16 bp):
TAATAATGATAAATAA
Found at i:70016935 original size:40 final size:40
Alignment explanation
Indices: 70016880--70017097 Score: 352
Period size: 40 Copynumber: 5.5 Consensus size: 40
70016870 CGGATGGTAA
* *
70016880 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
70016920 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70016960 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70017000 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
70017040 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70017080 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70017098 TACTTGGTCT
Statistics
Matches: 171, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 17 0.10
40 153 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70028046 original size:9 final size:9
Alignment explanation
Indices: 70028033--70028066 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
70028023 TTTTTTTTTT
70028033 TGGGGGGGG
1 TGGGGGGGG
*
70028042 GGGGGGGGG
1 TGGGGGGGG
*
70028051 TTGGGGGGG
1 TGGGGGGGG
70028060 TGGGGGG
1 TGGGGGG
70028067 AGAGCAAGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.88, T:0.12
Consensus pattern (9 bp):
TGGGGGGGG
Found at i:70037610 original size:43 final size:43
Alignment explanation
Indices: 70037563--70037713 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
70037553 TAGCCTAGCT
* * * *
70037563 ATGGTCTTACACAAAATCAAATAACGATACCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAAGGATGCCAATGTCCCAGAC
* *
70037606 ATGGTCTTACACGTAATCACATAAGGATGCCAATGTCTCAGAC
1 ATGGTCTTACACATAATCACATAAGGATGCCAATGTCCCAGAC
**
70037649 ATGGTCTTACATGTAATCACATAAGGATGCCAATGTCCCAGAC
1 ATGGTCTTACACATAATCACATAAGGATGCCAATGTCCCAGAC
*
70037692 ATTGTCTTACACATAATCACAT
1 ATGGTCTTACACATAATCACAT
70037714 CCCGTTAATT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACATAATCACATAAGGATGCCAATGTCCCAGAC
Found at i:70037667 original size:86 final size:86
Alignment explanation
Indices: 70037520--70037713 Score: 230
Period size: 86 Copynumber: 2.3 Consensus size: 86
70037510 TATCCTAGAT
* * * *
70037520 ATGGTCTTACATGTTATCACATATCGATGCCGATAGCCTAGCTATGGTCTTACACAAAATCAAAT
1 ATGGTCTTACACGTAATCACATAACGATGCCAATAGCCTAGCTATGGTCTTACACAAAATCAAAT
70037585 AACGATACCAATGTCCCAGAC
66 AACGATACCAATGTCCCAGAC
* * *** *
70037606 ATGGTCTTACACGTAATCACATAAGGATGCCAAT-GTCTCAGAC-ATGGTCTTACATGTAATCAC
1 ATGGTCTTACACGTAATCACATAACGATGCCAATAGCCT-AG-CTATGGTCTTACACAAAATCAA
* *
70037669 ATAAGGATGCCAATGTCCCAGAC
64 ATAACGATACCAATGTCCCAGAC
* *
70037692 ATTGTCTTACACATAATCACAT
1 ATGGTCTTACACGTAATCACAT
70037714 CCCGTTAATT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
85 3 0.03
86 88 0.96
87 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (86 bp):
ATGGTCTTACACGTAATCACATAACGATGCCAATAGCCTAGCTATGGTCTTACACAAAATCAAAT
AACGATACCAATGTCCCAGAC
Found at i:70039727 original size:190 final size:190
Alignment explanation
Indices: 70039398--70039782 Score: 626
Period size: 190 Copynumber: 2.0 Consensus size: 190
70039388 TGTTTTTCGA
* *
70039398 CTAAACAAGGGTCTATATAAGCTTCGACAATCACCTTGTGCATAATTTCATACTCTAAGGCAGTA
1 CTAAACAAGGGTCTATATAAGCTTCGACAATCACCTCGTGCATAATTTCATACTCTAAGGAAGTA
*
70039463 TCTAGTTCATCAACTCAGGTTTTGTGTTTCAAACATTAACCATTCTCTCTTCGTTCGAACATCTG
66 TCTAGTTCATCAACTCAGGTTTTGTGTTTCAAACATTAACCATTCCCTCTTCGTTCGAACATCTG
* * *
70039528 CTAAAACATCATTACTTTTAGTGGTGTATGTTGATGACATAATTGTCACGGGCAATTCTT
131 CTAAAACATCATTACTTTTAGTGGTATATGTTGATGACATAATCGTCACAGGCAATTCTT
* * *
70039588 CTAAACAAGGGTCTATATGAGCTTCGACAATCACCTCGTGCATAATTTTATGCTCTAAGGAAGTA
1 CTAAACAAGGGTCTATATAAGCTTCGACAATCACCTCGTGCATAATTTCATACTCTAAGGAAGTA
** ** *
70039653 TCTAGTTCATCAACTTGGGTTTTGTGTTTCAAACATTGGCCATTCCCTCTTTGTTCGAACATCTG
66 TCTAGTTCATCAACTCAGGTTTTGTGTTTCAAACATTAACCATTCCCTCTTCGTTCGAACATCTG
* *
70039718 CTGAAACATCATTGCTTTTAGTGGTATATGTTGATGACATAATCGTCACAGGCAATTCTT
131 CTAAAACATCATTACTTTTAGTGGTATATGTTGATGACATAATCGTCACAGGCAATTCTT
70039778 CTAAA
1 CTAAA
70039783 AAAGTGGATC
Statistics
Matches: 179, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
190 179 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (190 bp):
CTAAACAAGGGTCTATATAAGCTTCGACAATCACCTCGTGCATAATTTCATACTCTAAGGAAGTA
TCTAGTTCATCAACTCAGGTTTTGTGTTTCAAACATTAACCATTCCCTCTTCGTTCGAACATCTG
CTAAAACATCATTACTTTTAGTGGTATATGTTGATGACATAATCGTCACAGGCAATTCTT
Found at i:70042037 original size:21 final size:23
Alignment explanation
Indices: 70042009--70042054 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
70041999 AGTAAAACAT
70042009 AAAAAATATT-TACT-TAA-TAG
1 AAAAAATATTCTACTGTAAGTAG
70042029 AAAACAATATTCTACTGTAAGTAG
1 AAAA-AATATTCTACTGTAAGTAG
70042053 AA
1 AA
70042055 TAGGGTGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.18
21 6 0.27
22 4 0.18
23 3 0.14
24 5 0.23
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (23 bp):
AAAAAATATTCTACTGTAAGTAG
Found at i:70042260 original size:16 final size:16
Alignment explanation
Indices: 70042241--70042271 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70042231 ATTAATTAAT
*
70042241 TAATTAATTAATTTTC
1 TAATTAAATAATTTTC
70042257 TAATTAAATAATTTT
1 TAATTAAATAATTTT
70042272 TTCAACAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TAATTAAATAATTTTC
Found at i:70054016 original size:46 final size:46
Alignment explanation
Indices: 70053867--70054227 Score: 222
Period size: 46 Copynumber: 7.7 Consensus size: 46
70053857 TTTGTGAGCT
* * * *
70053867 AGTGTAAGA-CACGTCTGGGACATGCATCGACCAC-ATTATG-AGAGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCG-CCTCGA-GATGTA-AGCC
* * *
70053913 AGTGTAAGACCATGTCTGGGACATGTCATCGGCATTGAGATG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATG-CATC-GCCTCGAGATGTA-AGCC
* *
70053961 AATGTAAGA-CATGTTTGGGACATGCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAGATGTAAGCC
* *
70054007 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAGATGTAAGCC
* * * * *
70054051 AGTGTAGGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGCCTC-GAGATGT-A-AGCC
* * ** **
70054101 AATGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATTTCG-ATATTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-GCCTCGAGAT-GTA-AGCC
* * * *
70054150 AGTGTAAGACCATGTTTGGGACATGGAATCGACTTGATAGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGCCTCG--AGATGTAAGCC
*
70054197 AGTGTAAGAACATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACAT-GCATCG
70054228 GTATTATACC
Statistics
Matches: 253, Mismatches: 45, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.04
45 18 0.07
46 73 0.29
47 59 0.23
48 23 0.09
49 32 0.13
50 35 0.14
51 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAGATGTAAGCC
Found at i:70054216 original size:96 final size:95
Alignment explanation
Indices: 70053903--70054228 Score: 266
Period size: 96 Copynumber: 3.5 Consensus size: 95
70053893 TCGACCACAT
* * * * * *
70053903 TATG-AGAGTCAGTGTAAGACCATGTCTGGGACATGTCATCGGC-ATTGAGATGA-GAGCTAATG
1 TATGTAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTA-CGAGAT-ATG-TC-AGTG
* * * *
70053965 TAAGA-CATGTTTGGGACAT-GCATCAGC-CTCGA
62 TAAGACCATGTCTGGGACATGGAATCGGCAC-GGA
* * *
70053997 GATGTA-AGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCTACGAGATGTGTCAGTGTAGG
1 TATGTAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTACGAGATATGTCAGTGTAAG
*
70054059 ACCATGTCTGGGACATGGCATCGGCACGGA
66 ACCATGTCTGGGACATGGAATCGGCACGGA
* * * *
70054089 TATGTGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCTTCGATTTCGATAT-TCAGT
1 TATGT-AGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTACGA----GATATGTCAGT
* *
70054153 GTAAGACCATGTTTGGGACATGGAATC-G-ACTTGA
61 GTAAGACCATGTCTGGGACATGGAATCGGCAC-GGA
70054187 TA-G-ATGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG
1 TATGTA-GAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG
70054229 TATTATACCC
Statistics
Matches: 191, Mismatches: 25, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
90 7 0.04
91 14 0.07
92 26 0.14
93 17 0.09
94 24 0.13
95 16 0.08
96 46 0.24
97 3 0.02
98 5 0.03
99 29 0.15
100 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (95 bp):
TATGTAGAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTACGAGATATGTCAGTGTAAG
ACCATGTCTGGGACATGGAATCGGCACGGA
Found at i:70065858 original size:26 final size:26
Alignment explanation
Indices: 70065829--70065925 Score: 158
Period size: 26 Copynumber: 3.7 Consensus size: 26
70065819 TTACTGTTTC
*
70065829 TGGCAACTTTGCTACGATATTATTAT
1 TGGCAGCTTTGCTACGATATTATTAT
**
70065855 TGGCAGCTTTGCTGTGATATTATTAT
1 TGGCAGCTTTGCTACGATATTATTAT
*
70065881 TGGCAGCTTTGCTGCGATATTATTAT
1 TGGCAGCTTTGCTACGATATTATTAT
70065907 TGGCAGCTTTGCTACGATA
1 TGGCAGCTTTGCTACGATA
70065926 ATGGTGTGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (26 bp):
TGGCAGCTTTGCTACGATATTATTAT
Found at i:70074527 original size:34 final size:34
Alignment explanation
Indices: 70074489--70074554 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
70074479 ACTTTCTTAA
* * *
70074489 AAAACGCCTCTAAAGACCAGGACTTTTCGCGGAT
1 AAAACGCCACTAAAGACCAAGACTTTTAGCGGAT
70074523 AAAACGCCACTAAAGACCAAGACTTTTAGCGG
1 AAAACGCCACTAAAGACCAAGACTTTTAGCGG
70074555 CGCTTTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (34 bp):
AAAACGCCACTAAAGACCAAGACTTTTAGCGGAT
Found at i:70074896 original size:21 final size:21
Alignment explanation
Indices: 70074872--70074919 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
70074862 TTCTGTTCTG
* *
70074872 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCCCTGCTGC
70074893 CTCCGCCTCCCGCCCTGCTGC
1 CTCCGCCTCCCGCCCTGCTGC
70074914 CTCCGC
1 CTCCGC
70074920 TCTAAGTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.00, C:0.60, G:0.19, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCCCTGCTGC
Found at i:70080476 original size:9 final size:9
Alignment explanation
Indices: 70080462--70080580 Score: 58
Period size: 9 Copynumber: 12.6 Consensus size: 9
70080452 ATGTATTAGT
70080462 TAAGTTATG
1 TAAGTTATG
70080471 TAAGTTGTTATG
1 TAA---GTTATG
*
70080483 TACGTTATG
1 TAAGTTATG
*
70080492 TGAGTTATG
1 TAAGTTATG
* *
70080501 TAATTTATT
1 TAAGTTATG
*
70080510 TAAGTAATG
1 TAAGTTATG
* *
70080519 TGAGTTCTG
1 TAAGTTATG
70080528 TAAGTTGTTATG
1 TAA---GTTATG
* *
70080540 TAAATAATG
1 TAAGTTATG
*
70080549 TAAGTTATA
1 TAAGTTATG
* *
70080558 TGAGTTATT
1 TAAGTTATG
* *
70080567 TAATTTATT
1 TAAGTTATG
70080576 TAAGT
1 TAAGT
70080581 AATGATCAAT
Statistics
Matches: 80, Mismatches: 24, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
9 64 0.80
12 16 0.20
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (9 bp):
TAAGTTATG
Found at i:70084094 original size:7 final size:7
Alignment explanation
Indices: 70084079--70084159 Score: 108
Period size: 7 Copynumber: 11.6 Consensus size: 7
70084069 ATTCCAAAAT
70084079 TAAACCC
1 TAAACCC
*
70084086 TAAAGCC
1 TAAACCC
70084093 TAAACCC
1 TAAACCC
*
70084100 TAAACCA
1 TAAACCC
*
70084107 TAAACCA
1 TAAACCC
70084114 TAAACCC
1 TAAACCC
* *
70084121 TAAGCCT
1 TAAACCC
*
70084128 TAGACCC
1 TAAACCC
70084135 TAAACCC
1 TAAACCC
70084142 TAAACCC
1 TAAACCC
70084149 TAAACCC
1 TAAACCC
70084156 TAAA
1 TAAA
70084160 ACACTAAAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 64 1.00
ACGTcount: A:0.44, C:0.36, G:0.04, T:0.16
Consensus pattern (7 bp):
TAAACCC
Found at i:70084278 original size:14 final size:14
Alignment explanation
Indices: 70084261--70084292 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
70084251 CCCTAACCAT
70084261 AAACCATAAACCCC
1 AAACCATAAACCCC
*
70084275 AAACCTTAAACCCC
1 AAACCATAAACCCC
70084289 AAAC
1 AAAC
70084293 ACTAGACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.41, G:0.00, T:0.09
Consensus pattern (14 bp):
AAACCATAAACCCC
Found at i:70084724 original size:14 final size:13
Alignment explanation
Indices: 70084674--70084739 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 13
70084664 ATAAACCTCA
70084674 AACCCTAAATCAT
1 AACCCTAAATCAT
* *
70084687 AAAACATAAATCAT
1 -AACCCTAAATCAT
70084701 CAACCCTAAATCAT
1 -AACCCTAAATCAT
*
70084715 AACCCTTAAACCCAT
1 AACCC-TAAA-TCAT
70084730 AACCCCTAAA
1 AA-CCCTAAA
70084740 CCTATAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
13 5 0.12
14 26 0.60
15 9 0.21
16 3 0.07
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (13 bp):
AACCCTAAATCAT
Found at i:70084732 original size:15 final size:15
Alignment explanation
Indices: 70084712--70084746 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
70084702 AACCCTAAAT
*
70084712 CATAACCCTTAAACC
1 CATAACCCCTAAACC
70084727 CATAACCCCTAAACC
1 CATAACCCCTAAACC
*
70084742 TATAA
1 CATAA
70084747 AAATATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAACCCCTAAACC
Found at i:70084733 original size:28 final size:28
Alignment explanation
Indices: 70084664--70084748 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
70084654 CTTCTAAATT
70084664 ATAAACCTCA-AACCCTAAATCATAAAAC
1 ATAAACC-CATAACCCTAAATCATAAAAC
* **
70084692 ATAAA-TCATCAACCCTAAATCATAACCC
1 ATAAACCCAT-AACCCTAAATCATAAAAC
* *
70084720 TTAAACCCATAACCCCTAAACCTATAAAA
1 ATAAACCCATAA-CCCTAAATC-ATAAAA
70084749 ATATTAAATG
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
26 2 0.05
28 27 0.61
29 11 0.25
30 4 0.09
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (28 bp):
ATAAACCCATAACCCTAAATCATAAAAC
Found at i:70085499 original size:73 final size:73
Alignment explanation
Indices: 70085294--70085610 Score: 474
Period size: 74 Copynumber: 4.3 Consensus size: 73
70085284 ATCTACTGCT
70085294 GCGTTTTTGGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAAC
1 GCGTTTTT-GGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAAC
70085359 ATTTTAGTG
65 ATTTTAGTG
*
70085368 GCGTTTTTAGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTTTTAAC
1 GCGTTTTT-GGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAAC
70085433 ATTTTAGTG
65 ATTTTAGTG
* * * *
70085442 GCGTTTTTGGGAAACGCCGCTACTGCCAATGAAGCTCATATAAAATGACATCGTTTTTCTTAACA
1 GCGTTTTTGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAACA
70085507 TTTTAGTG
66 TTTTAGTG
* * ** **
70085515 GCGTTTTTTGGAAAACGCCGCTACTGCCAATGAAGCTCATGTAAAACGACGTCGTTTTGATTAAC
1 GCG-TTTTTGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAAC
* *
70085580 CTTTTAGCG
65 ATTTTAGTG
70085589 GCG-TTTTGGTAAAACGCCGCTA
1 GCGTTTTTGG-AAAACGCCGCTA
70085611 AAGGCTGACC
Statistics
Matches: 226, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
72 6 0.03
73 75 0.33
74 145 0.64
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (73 bp):
GCGTTTTTGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAACA
TTTTAGTG
Found at i:70085579 original size:147 final size:147
Alignment explanation
Indices: 70085294--70085610 Score: 492
Period size: 147 Copynumber: 2.1 Consensus size: 147
70085284 ATCTACTGCT
*
70085294 GCGTTTTTGGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTTTTTCTTAAC
1 GCGTTTTTGGG-AAACGCCGCTACTGCCAATGAAGCACATATAAAATAACATCGTTTTTCTTAAC
*
70085359 ATTTTAGTGGCGTTTTTAGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACGTCGTT
65 ATTTTAGTGGCGTTTTTAGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAACAACGTCGTT
** *
70085424 TTTTTTAACATTTTAGTG
130 TTGATTAACATTTTAGCG
* *
70085442 GCGTTTTTGGGAAACGCCGCTACTGCCAATGAAGCTCATATAAAATGACATCGTTTTTCTTAACA
1 GCGTTTTTGGGAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACATCGTTTTTCTTAACA
* * * *
70085507 TTTTAGTGGCGTTTTTTGGAAAACGCCGCTACTGCCAATGAAGCTCATGTAAAACGACGTCGTTT
66 TTTTAGTGGCGTTTTTAGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAACAACGTCGTTT
*
70085572 TGATTAACCTTTTAGCG
131 TGATTAACATTTTAGCG
*
70085589 GCG-TTTTGGTAAAACGCCGCTA
1 GCGTTTTTGG-GAAACGCCGCTA
70085611 AAGGCTGACC
Statistics
Matches: 155, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
146 6 0.04
147 138 0.89
148 11 0.07
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (147 bp):
GCGTTTTTGGGAAACGCCGCTACTGCCAATGAAGCACATATAAAATAACATCGTTTTTCTTAACA
TTTTAGTGGCGTTTTTAGGAAAACGCCGCTACTGCCAATGAAGCACATATAAAACAACGTCGTTT
TGATTAACATTTTAGCG
Found at i:70085630 original size:39 final size:40
Alignment explanation
Indices: 70085584--70085693 Score: 118
Period size: 41 Copynumber: 2.8 Consensus size: 40
70085574 ATTAACCTTT
* *
70085584 TAGCGGCG-TTTTGGTAAAACGCCGCTAAAGGCT-GACCTA
1 TAGCGGCGTTTTTAGAAAAACGCCGCTAAA-GCTCGACCTA
*
70085623 TAGCGGCGCTTTTTAAAAAAACGCCG-TGAAAGCTCGACCTA
1 TAGCGGCG-TTTTTAGAAAAACGCCGCT-AAAGCTCGACCTA
* * *
70085664 TTGCGACGTTTTTTGAAAAACGCCGCTAAA
1 TAGCGGCGTTTTTAGAAAAACGCCGCTAAA
70085694 ACTCCATCTA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
39 8 0.14
40 22 0.37
41 29 0.49
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (40 bp):
TAGCGGCGTTTTTAGAAAAACGCCGCTAAAGCTCGACCTA
Found at i:70090806 original size:33 final size:34
Alignment explanation
Indices: 70090744--70090810 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
70090734 AGGTCAAACA
70090744 TTTTCTTTTCTTTTCATAATTTTAGATTAGGTTTC
1 TTTTCTTTTCTTTTCAT-ATTTTAGATTAGGTTTC
*
70090779 TTTTCTTTTCTTCTT-AT-TTTTATATTAGGTTT
1 TTTTCTTTTCTT-TTCATATTTTAGATTAGGTTT
70090811 TTCCTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 14 0.47
35 14 0.47
36 2 0.07
ACGTcount: A:0.15, C:0.10, G:0.07, T:0.67
Consensus pattern (34 bp):
TTTTCTTTTCTTTTCATATTTTAGATTAGGTTTC
Found at i:70090819 original size:35 final size:34
Alignment explanation
Indices: 70090745--70090822 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 34
70090735 GGTCAAACAT
*
70090745 TTTCTTTTCTTTTCATAATTTTAGATTAGGTTTCT
1 TTTCTTTTCTTTTCAT-ATTTTAGATTAGGTTTCC
*
70090780 TTTCTTTTCTTCTT-AT-TTTTATATTAGGTTTTTCC
1 TTTCTTTTCTT-TTCATATTTTAGATTAGG--TTTCC
70090815 TTTCTTTT
1 TTTCTTTT
70090823 TAGAATAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
33 11 0.29
35 25 0.66
36 2 0.05
ACGTcount: A:0.13, C:0.13, G:0.06, T:0.68
Consensus pattern (34 bp):
TTTCTTTTCTTTTCATATTTTAGATTAGGTTTCC
Found at i:70096108 original size:22 final size:22
Alignment explanation
Indices: 70096083--70096148 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
70096073 GAAGTTTCTT
70096083 TTATTTAATGTTTCATATATGA
1 TTATTTAATGTTTCATATATGA
* * *
70096105 TTATTT--T-TTTCATTTCT-T
1 TTATTTAATGTTTCATATATGA
*
70096123 TTAGTTAATGTTTCATATATGA
1 TTATTTAATGTTTCATATATGA
70096145 TTAT
1 TTAT
70096149 CATTTTCATT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
18 5 0.16
19 8 0.25
20 2 0.06
21 8 0.25
22 9 0.28
ACGTcount: A:0.26, C:0.06, G:0.08, T:0.61
Consensus pattern (22 bp):
TTATTTAATGTTTCATATATGA
Found at i:70096123 original size:40 final size:40
Alignment explanation
Indices: 70096077--70096158 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
70096067 TTACAGGAAG
* **
70096077 TTTCTTTTATTTAATGTTTCATATATGATTATTTTTTTCA
1 TTTCTTTTAGTTAATGTTTCATATATGATTATCATTTTCA
70096117 TTTCTTTTAGTTAATGTTTCATATATGATTATCATTTTCA
1 TTTCTTTTAGTTAATGTTTCATATATGATTATCATTTTCA
70096157 TT
1 TT
70096159 CTTCTTTCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.09, G:0.06, T:0.62
Consensus pattern (40 bp):
TTTCTTTTAGTTAATGTTTCATATATGATTATCATTTTCA
Found at i:70101507 original size:6 final size:6
Alignment explanation
Indices: 70101496--70101524 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
70101486 AGCCGGAAAA
70101496 TAACAG TAACAG TAACAG TAACAG TAACA
1 TAACAG TAACAG TAACAG TAACAG TAACA
70101525 ATACAGTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.14, T:0.17
Consensus pattern (6 bp):
TAACAG
Found at i:70102526 original size:18 final size:19
Alignment explanation
Indices: 70102492--70102532 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
70102482 TAATTAATAG
70102492 TTAATATAATATATTATAA
1 TTAATATAATATATTATAA
* *
70102511 TTAATA-AATATCTTATAC
1 TTAATATAATATATTATAA
70102529 TTAA
1 TTAA
70102533 AGTATAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTAATATAATATATTATAA
Found at i:70106127 original size:19 final size:19
Alignment explanation
Indices: 70106105--70106142 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
70106095 CCTCTTTGCG
*
70106105 TTCTTTTCCCTTTTCCTTT
1 TTCTTTTCCCTTTCCCTTT
*
70106124 TTCTTTTCCGTTTCCCTTT
1 TTCTTTTCCCTTTCCCTTT
70106143 CTTTCTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.32, G:0.03, T:0.66
Consensus pattern (19 bp):
TTCTTTTCCCTTTCCCTTT
Found at i:70112700 original size:3 final size:3
Alignment explanation
Indices: 70112688--70112738 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
70112678 AGAAATAAAA
* * **
70112688 AAT AAT -AT AAT AAT AAT -AT AAT AGT AAT AAT AAC AAT GGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70112734 AAT AA
1 AAT AA
70112739 CAAAAAAGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:70112704 original size:11 final size:11
Alignment explanation
Indices: 70112688--70112737 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
70112678 AGAAATAAAA
70112688 AATAATATAAT
1 AATAATATAAT
70112699 AATAATATAAT
1 AATAATATAAT
*
70112710 AGT-A-ATAAT
1 AATAATATAAT
* *
70112719 AACAATGGTAAT
1 AATAAT-ATAAT
70112731 AATAATA
1 AATAATA
70112738 ACAAAAAAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
9 6 0.20
10 2 0.07
11 13 0.43
12 9 0.30
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (11 bp):
AATAATATAAT
Found at i:70112814 original size:3 final size:3
Alignment explanation
Indices: 70112806--70113141 Score: 115
Period size: 3 Copynumber: 111.3 Consensus size: 3
70112796 ACTTTAAAGT
70112806 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
70112853 ATA GGTA GATA AGTTA GATA A-A ATA A-A TATA GGTGA A-A GT- ATA CTA
1 ATA -ATA -ATA A--TA -ATA ATA ATA ATA -ATA -AT-A ATA ATA ATA ATA
* * * * *
70112899 ATA GTA ATA ATA CCATA GTA ATA ATG ATA ATA A-A A-A AT- TTA GTA
1 ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * *
70112943 ATA ATA CTA A-C ATG TTAA ATA GTA A-A ACAA ATA GTA ACA GTA AT-
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA A-TA ATA ATA ATA ATA ATA
* * * * * *
70112987 TTA AAA ATG ATA ATA GTA CTA A-A ATA A-G ATA ATA ATA ATA ATAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* * * *
70113031 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ACA ATG TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** *
70113079 AGA ATG TTA ATA AGG ATA ATA ATA ATAA ATA ATAA ATA ATA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA AT-A ATA ATA ATA ATA
*
70113126 A-A TTA ATTA ATA ATA A
1 ATA ATA A-TA ATA ATA A
70113142 AGTAATAAGT
Statistics
Matches: 240, Mismatches: 66, Indels: 54
0.67 0.18 0.15
Matches are distributed among these distances:
2 20 0.08
3 189 0.79
4 24 0.10
5 6 0.03
6 1 0.00
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:70114947 original size:44 final size:44
Alignment explanation
Indices: 70114900--70115323 Score: 176
Period size: 44 Copynumber: 9.6 Consensus size: 44
70114890 AACTAATGAT
* * *
70114900 TTCAACCTGCT-CCACTACTGCTTAGGGAGACAAGATCTGTAATT
1 TTCAACCTGCTACC-CTACTGCTTAGGGAGATAAGATCTATAATC
* * * * * ** * **
70114944 TTCAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCCTTTTGTC
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATAATC
* * * * * *
70114988 TTCGATCTGCT-CCACTACTGCTTAAGGAGACAAGATCTGTAATT
1 TTCAACCTGCTACC-CTACTGCTTAGGGAGATAAGATCTATAATC
* * * * ** * **
70115032 TTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCGTC
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATAATC
* * *
70115076 TTCGATCTGCT-CAACTACTGCTTAGGGAGATAAGATCTATAATC
1 TTCAACCTGCTAC-CCTACTGCTTAGGGAGATAAGATCTATAATC
* * * * *
70115120 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAG-GCT-TACTGTC
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATA--ATC
* * ** * * *
70115164 TTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGTAATC
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATAATC
* ** * * * ** * ***
70115208 TTCAGCCTATTACCCTACTACTTAGGGGGTTAAGGCCCATCGCC
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATAATC
* * * * * *
70115252 TTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAAT-
1 TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTAT-AATC
* *
70115296 TTCCAACCTGTTACCCTACCGCTTAGGG
1 TT-CAACCTGCTACCCTACTGCTTAGGG
70115324 GGTTAAGGCT
Statistics
Matches: 266, Mismatches: 103, Indels: 21
0.68 0.26 0.05
Matches are distributed among these distances:
42 2 0.01
43 5 0.02
44 229 0.86
45 28 0.11
46 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.33
Consensus pattern (44 bp):
TTCAACCTGCTACCCTACTGCTTAGGGAGATAAGATCTATAATC
Found at i:70115011 original size:88 final size:88
Alignment explanation
Indices: 70114633--70115332 Score: 580
Period size: 88 Copynumber: 7.9 Consensus size: 88
70114623 AGATTCGCTA
* * ** * * *
70114633 TCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAATCTGTGAATTTCCAGCTTGTTACCCTA
1 TCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGT-AATTTTCAGCCTGTTACCCTA
**
70114698 CTGCTTAGGGGGTTAAGGCTTATCG
64 CTGCTTAGGGGGTTAAGGCCCATCG
* * * * *
70114723 TCTTCGATCTGTTCCTCTACTGCTTA-GGATGATAAGATCTGCAATCTTCAGCCTATT-CCACTA
1 TCTTCGATCTGCTCCACTACTGCTTAGGGA-GATAAGATCTGTAATTTTCAGCCTGTTACC-CTA
* * *
70114786 CTGCTTAGGGAGAT-AGG---ATGG
64 CTGCTTAGGGGGTTAAGGCCCATCG
** * * * * *** * *
70114807 TGGCTTAAATCTGCTCCACTAATGGTTAGAGAGACAAGAT-TCGCCGTCTTC-GATCTGTT-CCA
1 T--CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-GTAATTTTCAG-CCTGTTACC-
*** * * * * * **
70114869 CTAAAACTTCAAGGAGATACGAACTAAT-G
61 CTACTGCTT-AGGGGGTTAAG-GCCCATCG
* * *
70114898 AT-TTCAACCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTAC
1 -TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTAC
* ** *
70114962 TGTTTAGGGGGTTAAGGCCTTTTG
65 TGCTTAGGGGGTTAAGGCCCATCG
* *
70114986 TCTTCGATCTGCTCCACTACTGCTTAAGGAGACAAGATCTGTAATTTTCAGCCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACT
70115051 GCTTAGGGGGTTAAGGCCCATCG
66 GCTTAGGGGGTTAAGGCCCATCG
* * * *
70115074 TCTTCGATCTGCTCAACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTGTTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACT
**
70115139 GCTTAGGGGGTTAAGGCTTA-CTG
66 GCTTAGGGGGTTAAGGCCCATC-G
** * * * *
70115162 TCTTCGATCTATTCCCCTACTGCTTAGGGTGATAAGATCTGTAATCTTCAGCCTATTACCCTACT
1 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACT
*
70115227 ACTTAGGGGGTTAAGGCCCATCG
66 GCTTAGGGGGTTAAGGCCCATCG
* * * * *
70115250 CCTTCGATCTGTTTCC-CTACTGCTTAGGGTGATAAGATCTGTAAATTTCCAACCTGTTACCCTA
1 TCTTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTGT-AATTTTCAGCCTGTTACCCTA
*
70115314 CCGCTTAGGGGGTTAAGGC
64 CTGCTTAGGGGGTTAAGGC
70115333 TTGTGAATTC
Statistics
Matches: 498, Mismatches: 89, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
84 4 0.01
85 2 0.00
86 46 0.09
87 18 0.04
88 305 0.61
89 96 0.19
90 23 0.05
91 1 0.00
92 3 0.01
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (88 bp):
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACT
GCTTAGGGGGTTAAGGCCCATCG
Found at i:70126473 original size:3 final size:3
Alignment explanation
Indices: 70126467--70126517 Score: 52
Period size: 3 Copynumber: 17.7 Consensus size: 3
70126457 GAAATAAAAA
* * **
70126467 AAT AAT -AT AAT AAT AAT -AT AAT AGT AAT AAT AAC AAT GGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70126513 AAT AA
1 AAT AA
70126518 CAAAAAAGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 4 0.11
3 34 0.89
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:70126481 original size:11 final size:11
Alignment explanation
Indices: 70126467--70126516 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
70126457 GAAATAAAAA
70126467 AATAATATAAT
1 AATAATATAAT
70126478 AATAATATAAT
1 AATAATATAAT
*
70126489 AGT-A-ATAAT
1 AATAATATAAT
* *
70126498 AACAATGGTAAT
1 AATAAT-ATAAT
70126510 AATAATA
1 AATAATA
70126517 ACAAAAAAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
9 6 0.20
10 2 0.07
11 13 0.43
12 9 0.30
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (11 bp):
AATAATATAAT
Found at i:70126593 original size:3 final size:3
Alignment explanation
Indices: 70126585--70126641 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
70126575 ACTTTAAAAT
70126585 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
70126633 ATA ATA ATA
1 ATA ATA ATA
70126642 TTGGTAGATG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70126804 original size:3 final size:3
Alignment explanation
Indices: 70126785--70126921 Score: 91
Period size: 3 Copynumber: 45.3 Consensus size: 3
70126775 TTTAAAAATG
* *
70126785 ATA ATA GTA GTA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * * **
70126832 A-A AGAA ATA AAA ACA ATG TTA ATA ATA AGA ATG TTA ATA AGG ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
70126877 ATA ATA ATAA ATA ATAA ATA ATA ATA CTA A-A TTA ATTA ATA ATA A
1 ATA ATA AT-A ATA AT-A ATA ATA ATA ATA ATA ATA A-TA ATA ATA A
70126922 AGTAATAAGT
Statistics
Matches: 103, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
2 5 0.05
3 87 0.84
4 11 0.11
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:70126891 original size:7 final size:7
Alignment explanation
Indices: 70126874--70126929 Score: 62
Period size: 7 Copynumber: 8.0 Consensus size: 7
70126864 GTTAATAAGG
70126874 ATAAT-A
1 ATAATAA
70126880 ATAATAA
1 ATAATAA
70126887 ATAATAA
1 ATAATAA
70126894 ATAAT-A
1 ATAATAA
*
70126900 ATACTAA
1 ATAATAA
*
70126907 ATTAATTA
1 A-TAATAA
70126915 ATAATAA
1 ATAATAA
70126922 AGTAATAA
1 A-TAATAA
70126930 GTAAATAAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
6 10 0.24
7 21 0.50
8 11 0.26
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (7 bp):
ATAATAA
Found at i:70142195 original size:28 final size:27
Alignment explanation
Indices: 70142106--70142209 Score: 77
Period size: 28 Copynumber: 3.6 Consensus size: 27
70142096 TTGTAATAGA
* *
70142106 GCTACGGCCCAGATTGATACTGATATGG
1 GCTA-GGCCCAGATTAATATTGATATGG
* *
70142134 GCTAGGCCCAGTATACTCTGATATTG-TAAGGG
1 GCTAGGCCCAG---A-T-TAATATTGAT-ATGG
70142166 GCTATGGCCCAGATTAATATTGATATGG
1 GCTA-GGCCCAGATTAATATTGATATGG
70142194 GCTAAGGCCCAG-TTAA
1 GCT-AGGCCCAGATTAA
70142210 CTCTGATTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
27 11 0.17
28 24 0.38
29 3 0.05
30 2 0.03
31 2 0.03
32 14 0.22
33 7 0.11
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
GCTAGGCCCAGATTAATATTGATATGG
Found at i:70146325 original size:40 final size:40
Alignment explanation
Indices: 70146281--70146360 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
70146271 GAATCTCGAG
70146281 TTAGTTAAATTGAGTTATTCGAGTTTCGAGTTCCAGTCAA
1 TTAGTTAAATTGAGTTATTCGAGTTTCGAGTTCCAGTCAA
70146321 TTAGTTAAATTGAGTTATTCGAGTTTCGAGTTCCAGTCAA
1 TTAGTTAAATTGAGTTATTCGAGTTTCGAGTTCCAGTCAA
70146361 GTTGAATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (40 bp):
TTAGTTAAATTGAGTTATTCGAGTTTCGAGTTCCAGTCAA
Found at i:70146514 original size:19 final size:20
Alignment explanation
Indices: 70146471--70146524 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
70146461 CTCTCTCAAC
70146471 AAAAATTACAAAATAATTTT-
1 AAAAATT-CAAAATAATTTTA
*
70146491 CAAAATTCAAAAT-ATTTATAA
1 AAAAATTCAAAATAATTT-T-A
70146512 AAAAATTCAAAAT
1 AAAAATTCAAAAT
70146525 TTATATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
20 6 0.21
21 12 0.41
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTA
Found at i:70146520 original size:28 final size:27
Alignment explanation
Indices: 70146489--70146550 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
70146479 CAAAATAATT
*
70146489 TTCAAAATTCAAAATATTTATAAAAAAA
1 TTCAAAATT-AAAATATTTAAAAAAAAA
* * *
70146517 TTCAAAATTTATATTTTTAAAAAAAAA
1 TTCAAAATTAAAATATTTAAAAAAAAA
70146544 TTCAAAA
1 TTCAAAA
70146551 AAAATTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 21 0.70
28 9 0.30
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (27 bp):
TTCAAAATTAAAATATTTAAAAAAAAA
Found at i:70146573 original size:12 final size:11
Alignment explanation
Indices: 70146536--70146562 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70146526 TATATTTTTA
70146536 AAAAAAAATTC
1 AAAAAAAATTC
70146547 AAAAAAAATTC
1 AAAAAAAATTC
70146558 AAAAA
1 AAAAA
70146563 GAAAGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:70146751 original size:21 final size:20
Alignment explanation
Indices: 70146713--70146755 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
70146703 TGTTTAATTT
*
70146713 TTTAATTTCACTCGACTCGAA
1 TTTAATTTCACTCAACTC-AA
*
70146734 TTTAATTTCACTTAACTCAA
1 TTTAATTTCACTCAACTCAA
70146754 TT
1 TT
70146756 AAAAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.44
Consensus pattern (20 bp):
TTTAATTTCACTCAACTCAA
Found at i:70147968 original size:16 final size:17
Alignment explanation
Indices: 70147943--70147979 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
70147933 TAAAATTGAA
70147943 ATATTGAATAATTTATT
1 ATATTGAATAATTTATT
70147960 ATATT-AATAATTTATT
1 ATATTGAATAATTTATT
70147976 ATAT
1 ATAT
70147980 GACCAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATTGAATAATTTATT
Found at i:70152936 original size:17 final size:17
Alignment explanation
Indices: 70152914--70152948 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
70152904 GGAGTATCAG
70152914 ATTAATCCAGAATCTAC
1 ATTAATCCAGAATCTAC
**
70152931 ATTAATTTAGAATCTAC
1 ATTAATCCAGAATCTAC
70152948 A
1 A
70152949 ACAGAGTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (17 bp):
ATTAATCCAGAATCTAC
Found at i:70159620 original size:23 final size:22
Alignment explanation
Indices: 70159593--70159667 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 22
70159583 AGTTGTGCTT
70159593 TAAAAATAATGCAATTGGTATTG
1 TAAAAATAATGCAATT-GTATTG
* *
70159616 -CAAAATATTGCAAGTTGTATTG
1 TAAAAATAATGCAA-TTGTATTG
* *
70159638 TGAAAATACTGCAAATTGTATTG
1 TAAAAATAATGC-AATTGTATTG
70159661 TAAAAAT
1 TAAAAAT
70159668 TGTATTGTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 17 0.39
23 25 0.57
24 2 0.05
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.35
Consensus pattern (22 bp):
TAAAAATAATGCAATTGTATTG
Found at i:70159627 original size:22 final size:21
Alignment explanation
Indices: 70159595--70159669 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
70159585 TTGTGCTTTA
*
70159595 AAAATAATGCAATTGGTATTGC
1 AAAATATTGCAATT-GTATTGC
*
70159617 AAAATATTGCAAGTTGTATTGTG
1 AAAATATTGCAA-TTGTATTG-C
* *
70159640 AAAATACTGCAAATTGTATTGT
1 AAAATATTGC-AATTGTATTGC
70159662 AAAA-ATTG
1 AAAATATTG
70159670 TATTGTAAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.07
22 21 0.47
23 19 0.42
24 2 0.04
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (21 bp):
AAAATATTGCAATTGTATTGC
Found at i:70159669 original size:14 final size:14
Alignment explanation
Indices: 70159650--70159678 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
70159640 AAAATACTGC
70159650 AAATTGTATTGTAA
1 AAATTGTATTGTAA
70159664 AAATTGTATTGTAA
1 AAATTGTATTGTAA
70159678 A
1 A
70159679 GATACTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (14 bp):
AAATTGTATTGTAA
Found at i:70159672 original size:37 final size:36
Alignment explanation
Indices: 70159630--70159702 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
70159620 ATATTGCAAG
* *
70159630 TTGTATTGTGAAA-ATACTGCAAATTGTATTGTAAAAA
1 TTGTATTGT-AAAGATACTGCAAACTATATTG-AAAAA
*
70159667 TTGTATTGTAAAGATACTGTAAACTATATTGAAAAA
1 TTGTATTGTAAAGATACTGCAAACTATATTGAAAAA
70159703 CTACGTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.25
37 24 0.75
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.37
Consensus pattern (36 bp):
TTGTATTGTAAAGATACTGCAAACTATATTGAAAAA
Found at i:70159859 original size:54 final size:54
Alignment explanation
Indices: 70159795--70159950 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 54
70159785 AATATTTTGG
* * * * *
70159795 AAATCCTGTAAGTATAGGGCTGCAATCTTAAATCGGCGAGCCGA-AAGATTCGAA
1 AAATCTTGTAAGTATAAGGCTGCAATCGTAAATCGGCAAACC-ATAAGATTCGAA
* **
70159849 AAATCTTGTAAGTATAAGGTTGCAATCGTAAATCGGCAAACCATAAGATTTTAA
1 AAATCTTGTAAGTATAAGGCTGCAATCGTAAATCGGCAAACCATAAGATTCGAA
* * * *** * *
70159903 AAATATTGTAAGTATGAGGTTATGATTGTAAATCGACAAACCATAAGA
1 AAATCTTGTAAGTATAAGGCTGCAATCGTAAATCGGCAAACCATAAGA
70159951 GACATGAAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 85 0.99
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (54 bp):
AAATCTTGTAAGTATAAGGCTGCAATCGTAAATCGGCAAACCATAAGATTCGAA
Found at i:70160228 original size:108 final size:107
Alignment explanation
Indices: 70160039--70160368 Score: 374
Period size: 108 Copynumber: 3.1 Consensus size: 107
70160029 TTGAGAATCT
* * * * * *
70160039 TAAATCAACAAACTGTAAGATTCTAAAAATCTTATACGTAGAATGTCGTGATCATAATTCAATAG
1 TAAATCAACAGATTGTAAGATTCTTAAAATCTTATA-GTAGAAGGTCGTGATCATAAATCAACAG
* *
70160104 ACCGTGAGATTCTTAAAATCTTATAAGCAGAAGGTCGTGATCA
65 ACCGTAAGATTCTTAAAATCTTATAAGCAGAAGGTCGTGATCG
* * * *
70160147 TAAATCAGCAGATTGTAAGATTCTTAAAATCTTTTCAGTAGAAGGTCGTGATCGTAAATCAACAA
1 TAAATCAACAGATTGTAAGATTCTTAAAATCTTAT-AGTAGAAGGTCGTGATCATAAATCAACAG
* * * * *
70160212 ACCATAAGATTCTTAAAATCTTCTAAGCAAAAGGTCATGATTG
65 ACCGTAAGATTCTTAAAATCTTATAAGCAGAAGGTCGTGATCG
* * * * * * *
70160255 TAAATCAACAGGTTGTAAAATTCTTAAAATCTTGTAAGTAGAAGATCCTGATCATAAATCAGCGG
1 TAAATCAACAGATTGTAAGATTCTTAAAATCTTAT-AGTAGAAGGTCGTGATCATAAATCAACAG
* * *
70160320 ACTGTAAGATT-TTAAAAATCTTGTAAGCAGAAGGTTGTGATCG
65 ACCGTAAGATTCTT-AAAATCTTATAAGCAGAAGGTCGTGATCG
70160363 TAAATC
1 TAAATC
70160369 TGTGGACCGT
Statistics
Matches: 185, Mismatches: 35, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
107 2 0.01
108 182 0.98
109 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (107 bp):
TAAATCAACAGATTGTAAGATTCTTAAAATCTTATAGTAGAAGGTCGTGATCATAAATCAACAGA
CCGTAAGATTCTTAAAATCTTATAAGCAGAAGGTCGTGATCG
Found at i:70160398 original size:54 final size:54
Alignment explanation
Indices: 70160053--70160402 Score: 299
Period size: 54 Copynumber: 6.5 Consensus size: 54
70160043 TCAACAAACT
* * * * * * * ***
70160053 GTAAGATTCTAAAAATCTTATACGTAGAATGTCGTGATCATAATTCAATAGACC
1 GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
* * * * **
70160107 GTGAGATTCTTAAAATCTTATAAGCAGAAGGTCGTGATCATAAATCAGCAGATT
1 GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
* * * * **
70160161 GTAAGATTCTTAAAATCTTTTCAGTAGAAGGTCGTGATCGTAAATCAACAAACC
1 GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
* * * * * * **
70160215 ATAAGATTCTTAAAATCTTCTAAGCAAAAGGTCATGATTGTAAATCAACAGG-TT
1 GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGC-GGACC
* * * * * *
70160269 GTAAAATTCTTAAAATCTTGTAAGTAGAAGATCCTGATCATAAATCAGCGGACT
1 GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
* * *
70160323 GTAAGATT-TTAAAAATCTTGTAAGCAGAAGGTTGTGATCGTAAATCTGTGGACC
1 GTAAGATTCTT-AAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
* *
70160377 GTAATATTCTTAAAATTTTGTAAGCA
1 GTAAGATTCTTAAAATCTTGTAAGCA
70160403 AACTTCATGC
Statistics
Matches: 240, Mismatches: 52, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.02
54 234 0.98
55 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (54 bp):
GTAAGATTCTTAAAATCTTGTAAGCAGAAGGTCGTGATCGTAAATCAGCGGACC
Found at i:70163605 original size:46 final size:46
Alignment explanation
Indices: 70163537--70163627 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
70163527 TATATATACA
* * * *
70163537 CATCTCATACATTTCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACAATTCTCACATTAACCATTCGGCTTCACCACATATC
* *
70163583 CATCTCATACACATT-TCGCATTAACCATTCGGCTTCCCCACATAT
1 CATCTCATACA-ATTCTCACATTAACCATTCGGCTTCACCACATAT
70163628 ATACACTTCC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.26, C:0.33, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACAATTCTCACATTAACCATTCGGCTTCACCACATATC
Found at i:70163692 original size:47 final size:47
Alignment explanation
Indices: 70163641--70163901 Score: 414
Period size: 47 Copynumber: 5.6 Consensus size: 47
70163631 CACTTCCACG
** *
70163641 TTCATCACATTGGCCATTAAGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* * *
70163688 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
70163735 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
70163782 CTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
* *
70163829 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
*
70163876 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
70163902 GCTCATATAT
Statistics
Matches: 201, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACAAATGCATGTTCACA
Found at i:70163708 original size:94 final size:94
Alignment explanation
Indices: 70163607--70163932 Score: 412
Period size: 94 Copynumber: 3.5 Consensus size: 94
70163597 TTCGCATTAA
* * * **
70163607 CCATTCGG-CTTCCCCACATATATACACT-TCCACGTTCATCACATTGGCCATTAAGCCTTATCA
1 CCATTCGGCCTT-CACACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
70163670 CACATATGCATGTTCACATTCATCACATTGG
64 CACAAATGCATGTTCACATTCATCACATTGG
*
70163701 CCATTCGGCCTT-ATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCAC
1 CCATTCGGCCTTCA-CACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
70163765 ACAAATGCATGTTCACACTCATCACATTGG
65 ACAAATGCATGTTCACATTCATCACATTGG
* * *
70163795 CCATTCGGCCTTAGCACACA-A-ATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTAGCA
1 CCATTCGGCCTT--CACACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
*
70163858 CACAAATGCATGTTCACATTCATCACATTTG
64 CACAAATGCATGTTCACATTCATCACATTGG
* ** *
70163889 CCATTCGGCCTT-AGCTCATATATACACATTCACATCCATCACAT
1 CCATTCGGCCTTCA-CACATATATACATGTTCACATTCATCACAT
70163933 AAAATCCTAA
Statistics
Matches: 204, Mismatches: 19, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
91 1 0.00
92 3 0.01
93 2 0.01
94 189 0.93
95 4 0.02
96 4 0.02
97 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (94 bp):
CCATTCGGCCTTCACACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CAAATGCATGTTCACATTCATCACATTGG
Found at i:70163837 original size:23 final size:23
Alignment explanation
Indices: 70163811--70163884 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
70163801 GGCCTTAGCA
70163811 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
** * *
70163834 CACATTTGCCA--TTCGGCCTTAGCA-
1 CACAAATG-CATGTTC-ACATT--CAT
70163858 CACAAATGCATGTTCACATTCAT
1 CACAAATGCATGTTCACATTCAT
70163881 CACA
1 CACA
70163885 TTTGCCATTC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 15 0.42
24 11 0.31
25 5 0.14
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (23 bp):
CACAAATGCATGTTCACATTCAT
Found at i:70163921 original size:47 final size:47
Alignment explanation
Indices: 70163641--70163932 Score: 404
Period size: 47 Copynumber: 6.2 Consensus size: 47
70163631 CACTTCCACG
** *
70163641 TTCATCACATTGGCCATTAAGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * *
70163688 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * *
70163735 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
70163782 CTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* *
70163829 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
* * * * **
70163876 TTCATCACATTTGCCATTCGGCCTTAGCTCATATATACACATTCACA
1 TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
*
70163923 TCCATCACAT
1 TTCATCACAT
70163933 AAAATCCTAA
Statistics
Matches: 225, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 225 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.31
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTAGCACACATATGCATGTTCACA
Found at i:70168430 original size:60 final size:59
Alignment explanation
Indices: 70168356--70168492 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
70168346 AACTGTGTCA
* *
70168356 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * * *
70168416 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGTTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
70168476 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
70168493 GTTAACTTTG
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 51 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:70168912 original size:19 final size:19
Alignment explanation
Indices: 70168884--70168925 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
70168874 TTCCGCAACG
*
70168884 TAAATGTTTTCAAA-GGAAA
1 TAAATATTTT-AAATGGAAA
70168903 TAAATATTTTAAATGGAAA
1 TAAATATTTTAAATGGAAA
70168922 TAAA
1 TAAA
70168926 CTTTGTGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (19 bp):
TAAATATTTTAAATGGAAA
Found at i:70171587 original size:47 final size:47
Alignment explanation
Indices: 70171532--70171760 Score: 314
Period size: 47 Copynumber: 5.1 Consensus size: 47
70171522 TTAGGATTTT
* * *
70171532 ATGTGATGAATGTGAATATGTATATATGTGAGAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
70171579 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70171626 ATGTGATGAATGTGAACATGCATATATGTGAT-A-----AA-GGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70171666 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
70171713 ATGTGATGAATGTGAA-GTGTATATATGTGGTAAAG-CGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
70171758 ATG
1 ATG
70171761 CGAAATGTGT
Statistics
Matches: 165, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
40 37 0.22
41 3 0.02
45 12 0.07
46 18 0.11
47 95 0.58
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:70171667 original size:40 final size:39
Alignment explanation
Indices: 70171621--70171708 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 39
70171611 AAGGCCGAAT
70171621 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAAA
1 GGCCAATGTGATGAATGTGAACATGCATATATGTGAT-AA
70171661 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
1 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
70171700 GGCCGAATG
1 GGCC-AATG
70171709 GCCAATGTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
39 6 0.13
40 41 0.87
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
Found at i:70171669 original size:87 final size:86
Alignment explanation
Indices: 70171574--70171747 Score: 303
Period size: 87 Copynumber: 2.0 Consensus size: 86
70171564 AAGGCCGAAT
*
70171574 GGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
70171639 GAACATGCATATATGTGATAAA
66 GAA-ATGCATATATGTGATAAA
70171661 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
1 GGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
* * *
70171726 GAAGTGTATATATGTGGTAAA
66 GAAATGCATATATGTGATAAA
70171747 G
1 G
70171748 CGAATGGCTA
Statistics
Matches: 83, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 16 0.19
87 67 0.81
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (86 bp):
GGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
GAAATGCATATATGTGATAAA
Found at i:70171806 original size:46 final size:46
Alignment explanation
Indices: 70171735--70171962 Score: 377
Period size: 46 Copynumber: 5.0 Consensus size: 46
70171725 TGAAGTGTAT
* *
70171735 ATATGTGGTAAAG-CGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
70171780 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
70171826 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
70171872 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
70171918 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
70171963 TGTATAATAT
Statistics
Matches: 174, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 12 0.07
46 162 0.93
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:70173507 original size:40 final size:40
Alignment explanation
Indices: 70173445--70173576 Score: 219
Period size: 40 Copynumber: 3.3 Consensus size: 40
70173435 GAGTTATATA
*
70173445 TATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
70173485 TATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
70173525 TATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
70173565 TATCCGGGCTAA
1 TATCCGGGCTAA
70173577 ACCTCGAAGG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:70173585 original size:80 final size:79
Alignment explanation
Indices: 70173445--70173596 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 79
70173435 GAGTTATATA
* * *
70173445 TATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCCGAAGAGCA
1 TATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACCCGAAG-GCA
*
70173510 TTCGTGCTAGTGATG
65 TTCATGCTAGTGATG
* * *
70173525 TATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA-ACCTCGAAGGCA
1 TATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACC-CGAAGGCA
70173589 TTCATGCT
65 TTCATGCT
70173597 GGAATTATGA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
79 12 0.19
80 52 0.81
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
TATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGACCCGAAGGCAT
TCATGCTAGTGATG
Found at i:70173671 original size:29 final size:28
Alignment explanation
Indices: 70173636--70173764 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 28
70173626 CTCCAACCGA
* *
70173636 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
70173665 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
70173693 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * * *
70173722 GCACTATGTGTGTGAGTTCTTTAATAGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
70173750 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
70173765 AATCAGTCAG
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 36 0.45
29 44 0.55
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:70173694 original size:57 final size:57
Alignment explanation
Indices: 70173604--70173792 Score: 220
Period size: 57 Copynumber: 3.3 Consensus size: 57
70173594 GCTGGAATTA
* * * * *
70173604 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
70173661 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * * * *
70173718 TGAGGCACTATGTGTGTGAGTTCTTTAATAGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
70173775 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
70173793 AGTGTGTTTC
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
56 13 0.12
57 98 0.88
58 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:70173706 original size:28 final size:27
Alignment explanation
Indices: 70173608--70173764 Score: 116
Period size: 28 Copynumber: 5.6 Consensus size: 27
70173598 GAATTATGAG
* * * *
70173608 GCACTGTGTGTGCAAGTTCTCCAACCGA
1 GCACTATGTGTGCGAGTTCT-TAATCGA
* * * * *
70173636 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
70173664 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
70173693 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
* *
70173721 GGCACTATGTGTGTGAGTTCTTTAATAGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
70173750 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
70173765 AATCAGTCAG
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:70177628 original size:47 final size:47
Alignment explanation
Indices: 70177575--70177805 Score: 284
Period size: 47 Copynumber: 5.1 Consensus size: 47
70177565 TTTAGGATTT
*
70177575 CAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGC
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGC
* *
70177622 CAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGC
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGC
70177669 CAATGTGATGAATGTGAACATGCATATATGTG---A---T-AA--GC
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGC
*
70177707 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGC
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGC
* * * * * *
70177754 CAATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGC
1 CAATGTGATGAATGT-GAACATGCATATATGTGATAAGGCTGAATGGC
*
70177801 TAATG
1 CAATG
70177806 CGAAATGTGT
Statistics
Matches: 163, Mismatches: 11, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
38 34 0.21
40 2 0.01
41 1 0.01
44 1 0.01
45 2 0.01
47 120 0.74
48 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGC
Found at i:70177709 original size:38 final size:38
Alignment explanation
Indices: 70177667--70177743 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
70177657 AGGCCGAATG
70177667 GCCAATGTGATGAATGTGAACATGCATATATGTGATAA
1 GCCAATGTGATGAATGTGAACATGCATATATGTGATAA
70177705 GCCAATGTGATGAATGTGAACATGCATATATGTGATAA
1 GCCAATGTGATGAATGTGAACATGCATATATGTGATAA
70177743 G
1 G
70177744 GCAGAATGGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (38 bp):
GCCAATGTGATGAATGTGAACATGCATATATGTGATAA
Found at i:70177839 original size:132 final size:131
Alignment explanation
Indices: 70177575--70177814 Score: 349
Period size: 132 Copynumber: 1.8 Consensus size: 131
70177565 TTTAGGATTT
* * *
70177575 CAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAA
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAA
* * * *
70177640 CATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAA
66 CATGCATATATGTGATAAAGCCGAATGGCCAATGCGA-GAATGTGAACATGCATATAGGTGATAA
70177705 GC
130 GC
70177707 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGA
1 CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGT-GA
* * * *
70177772 A-GTGTATATATGTGGTAAAGCCGAATGGCTAATGCGA-AATGTG
65 ACATGCATATATGTGATAAAGCCGAATGGCCAATGCGAGAATGTG
70177815 TATGAGATGG
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
130 6 0.06
132 88 0.91
133 3 0.03
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (131 bp):
CAATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAA
CATGCATATATGTGATAAAGCCGAATGGCCAATGCGAGAATGTGAACATGCATATAGGTGATAAG
C
Found at i:70177961 original size:46 final size:46
Alignment explanation
Indices: 70177779--70177943 Score: 285
Period size: 46 Copynumber: 3.6 Consensus size: 46
70177769 GGAAGTGTAT
* *
70177779 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
70177825 ATATGAGGTAAAGCCGAATGGCTAATACGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
70177871 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* *
70177917 ATATGTGGTAAAGCCAAATGGCTAATG
1 ATATGAGGTAAAGCCGAATGGCTAATG
70177944 TGAGATATGT
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 113 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:70182814 original size:40 final size:40
Alignment explanation
Indices: 70182747--70182958 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
70182737 ACCCAAGTAT
*
70182747 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
70182786 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
70182826 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * * * *
70182866 CTTCGGGACATAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
70182906 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
70182946 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
70182959 TCCAGTTATC
Statistics
Matches: 156, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 13 0.08
40 140 0.90
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:70195566 original size:40 final size:40
Alignment explanation
Indices: 70195489--70195614 Score: 173
Period size: 40 Copynumber: 3.2 Consensus size: 40
70195479 AACCCAAGTA
* * * *
70195489 CCTTCGGGATTTAG-CCGGATATAGCAACTTGCCCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
70195528 CCTTCGGGACTTAGCCCAGATATAATAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70195568 CCTTCGGGACTTGGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70195608 CCTTCGG
1 CCTTCGG
70195615 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
39 13 0.17
40 63 0.83
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70196862 original size:13 final size:13
Alignment explanation
Indices: 70196839--70196872 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
70196829 TTATTTTATT
70196839 ATTTCTAACACAAA
1 ATTT-TAACACAAA
70196853 ATTTTAACACAAA
1 ATTTTAACACAAA
70196866 ATGTTTA
1 AT-TTTA
70196873 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:70204622 original size:54 final size:54
Alignment explanation
Indices: 70204558--70204668 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 54
70204548 TGCTACAATA
* ** * *
70204558 TAGTCTTTAAAGCGTTATACCTCGGAGGTATGTAACTCGGAATCGAATTCTTAC
1 TAGTCCTTAAAGCACTATACCTCGGAGGTATGTAACTCGAAATCAAATTCTTAC
* *
70204612 TAGTCCTTAAAGCACTATACCTTGGAGGTATGTAACTTGAAATCAAATTCTTAC
1 TAGTCCTTAAAGCACTATACCTCGGAGGTATGTAACTCGAAATCAAATTCTTAC
70204666 TAG
1 TAG
70204669 CTAAGGTGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (54 bp):
TAGTCCTTAAAGCACTATACCTCGGAGGTATGTAACTCGAAATCAAATTCTTAC
Found at i:70225794 original size:15 final size:15
Alignment explanation
Indices: 70225774--70225820 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
70225764 TTGTCTCGTA
70225774 TTATGTTTTAGTCAC
1 TTATGTTTTAGTCAC
* *
70225789 TTATGTTTGGAAT-A-
1 TTATGTTT-TAGTCAC
70225803 TTATGTTTTAGTCAC
1 TTATGTTTTAGTCAC
70225818 TTA
1 TTA
70225821 CATTATCATG
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.36
15 12 0.48
16 2 0.08
ACGTcount: A:0.23, C:0.09, G:0.15, T:0.53
Consensus pattern (15 bp):
TTATGTTTTAGTCAC
Found at i:70226020 original size:22 final size:22
Alignment explanation
Indices: 70225979--70226021 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
70225969 CAATTTAATT
*
70225979 CTTTCCTTTTATGTTCTTTTAA
1 CTTTCCTTTTATCTTCTTTTAA
* *
70226001 CTTTCCTTTTTTCTTTTTTTA
1 CTTTCCTTTTATCTTCTTTTA
70226022 TTTTCTATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
CTTTCCTTTTATCTTCTTTTAA
Found at i:70227520 original size:29 final size:30
Alignment explanation
Indices: 70227465--70227522 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
70227455 AAGAGGACTT
* * *
70227465 TTAAATAAAAAAAGTGGAGGGATTAAATTC
1 TTAAATAAAAAAAGTAGAAGGACTAAATTC
*
70227495 TTAAA-AATAAAAGTAGAAGGACTAAATT
1 TTAAATAAAAAAAGTAGAAGGACTAAATT
70227523 TCAAATGAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.26
Consensus pattern (30 bp):
TTAAATAAAAAAAGTAGAAGGACTAAATTC
Found at i:70228281 original size:2 final size:2
Alignment explanation
Indices: 70228269--70228298 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
70228259 TAATGTTGTT
70228269 TA TA TA T- TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70228299 TTTTTGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:70230236 original size:19 final size:19
Alignment explanation
Indices: 70230198--70230236 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70230188 AAATAGCGAG
*
70230198 AATTTATTTTCTAAGTATA
1 AATTTATTTTCTAAGAATA
70230217 AATTCTATTTTCT-AGAATA
1 AATT-TATTTTCTAAGAATA
70230236 A
1 A
70230237 CAATTCTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:70232725 original size:26 final size:25
Alignment explanation
Indices: 70232669--70232725 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
70232659 TATTTTTAAT
* *
70232669 TATTATTCATTTTAAATTTTATATA
1 TATTATTCATTTTAAATCTTATACA
** *
70232694 CGTTATTGATTTTAAACTCTTATACA
1 TATTATTCATTTTAAA-TCTTATACA
70232720 TATTAT
1 TATTAT
70232726 ATATTTTGAA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.33, C:0.09, G:0.04, T:0.54
Consensus pattern (25 bp):
TATTATTCATTTTAAATCTTATACA
Found at i:70233031 original size:26 final size:28
Alignment explanation
Indices: 70232983--70233035 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
70232973 TGTTTTTGTA
*
70232983 TATTATTTATTTTAAATTTCTCTTTTACT
1 TATTATTTATTTTAAA-TGCTCTTTTACT
70233012 TATTATTTATTTT-AA-GCTCTTTTA
1 TATTATTTATTTTAAATGCTCTTTTA
70233036 TATGTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
28 2 0.09
29 13 0.57
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (28 bp):
TATTATTTATTTTAAATGCTCTTTTACT
Found at i:70233272 original size:26 final size:23
Alignment explanation
Indices: 70233223--70233272 Score: 55
Period size: 23 Copynumber: 2.0 Consensus size: 23
70233213 TGTTATCTAT
*
70233223 TTTAAATTTTTTATCTTGTTTAC
1 TTTAAATTTTTTATCTTGTATAC
*
70233246 TTTAAATTGCTTTTTTCTTCGTATAC
1 TTTAAATT--TTTTATCTT-GTATAC
70233272 T
1 T
70233273 ATTTTACTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 8 0.36
25 8 0.36
26 6 0.27
ACGTcount: A:0.20, C:0.12, G:0.06, T:0.62
Consensus pattern (23 bp):
TTTAAATTTTTTATCTTGTATAC
Found at i:70238890 original size:28 final size:28
Alignment explanation
Indices: 70238848--70238947 Score: 101
Period size: 28 Copynumber: 3.6 Consensus size: 28
70238838 CGATGTCTAG
* * *
70238848 CACACTATGTACCATACTCGATACCTCA
1 CACACTAAGTGCCATTCTCGATACCTCA
* * * **
70238876 CACGCTAAGTTCCATTCTCGATACTTTT
1 CACACTAAGTGCCATTCTCGATACCTCA
* **
70238904 CACACTAAGTGCCATTCTCGATACTTTG
1 CACACTAAGTGCCATTCTCGATACCTCA
70238932 CACACTAAGTGCCATT
1 CACACTAAGTGCCATT
70238948 TATATATAGA
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCGATACCTCA
Found at i:70239022 original size:40 final size:39
Alignment explanation
Indices: 70238958--70239043 Score: 127
Period size: 40 Copynumber: 2.2 Consensus size: 39
70238948 TATATATAGA
* *
70238958 TAGCCGAAGCTATCTCGAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCCAACTGCACACCAAGTGCCA-TTT
* *
70238998 TAGCCGAAGCTATTTCCAACTGCACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTCCAACTGCACACCAAGTGCCATTT
70239037 TAGCCGA
1 TAGCCGA
70239044 TAAGTCGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 10 0.24
40 32 0.76
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCCAACTGCACACCAAGTGCCATTT
Found at i:70240858 original size:20 final size:20
Alignment explanation
Indices: 70240820--70240867 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
70240810 TAAAATCTAA
* **
70240820 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
70240840 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
70240860 AAA-ATAAA
1 AAAGATAAA
70240868 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:70240892 original size:27 final size:26
Alignment explanation
Indices: 70240862--70240924 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
70240852 AGATAATTAA
70240862 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
70240889 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
70240916 AATATAAAT
1 AATA-AAAT
70240925 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:70240911 original size:15 final size:15
Alignment explanation
Indices: 70240891--70240920 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70240881 ATAATCCTAA
*
70240891 TAATTATCTTAATAT
1 TAATTATCCTAATAT
70240906 TAATTATCCTAATAT
1 TAATTATCCTAATAT
70240921 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:70245638 original size:8 final size:9
Alignment explanation
Indices: 70245616--70245650 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
70245606 TTTGGTGTTA
70245616 GTTTTTGAT
1 GTTTTTGAT
70245625 GTTTTTGAT
1 GTTTTTGAT
70245634 GTTTTTGAT
1 GTTTTTGAT
70245643 GTTTTTGA
1 GTTTTTGA
70245651 GATCCTCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.11, C:0.00, G:0.23, T:0.66
Consensus pattern (9 bp):
GTTTTTGAT
Found at i:70251710 original size:43 final size:43
Alignment explanation
Indices: 70251611--70251732 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 43
70251601 ACCGAGATGT
* * * * *
70251611 GATTACATGTAAGGCCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACGTATAAGACCATGTCTGGGACATTGGCATCGTAATGA
* *
70251654 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTATAAGACCATGTCTGGGACATTGGCATCG-TAATGA
* * *
70251697 GATTTCGTATAAGACCCTGTCTGGGACAGT-GCATCG
1 GATTACGTATAAGACCATGTCTGGGACATTGGCATCG
70251733 ATATGTGATA
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 6 0.09
43 60 0.87
44 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
GATTACGTATAAGACCATGTCTGGGACATTGGCATCGTAATGA
Found at i:70251881 original size:33 final size:33
Alignment explanation
Indices: 70251844--70251910 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
70251834 ATAAGTCGAG
70251844 AAAGAATGTGTTAATGAGTTAAACGACTCAGGT
1 AAAGAATGTGTTAATGAGTTAAACGACTCAGGT
70251877 AAAGAATGTGTTAATGAGTTAAACGACTCAGGT
1 AAAGAATGTGTTAATGAGTTAAACGACTCAGGT
70251910 A
1 A
70251911 CGTACGAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (33 bp):
AAAGAATGTGTTAATGAGTTAAACGACTCAGGT
Found at i:70253686 original size:27 final size:27
Alignment explanation
Indices: 70253600--70253688 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
70253590 CTCAATTTAC
70253600 AAAATTACTGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
*
70253627 AGAAA-TACCGAAATACCCCTT-TAGGGT
1 A-AAATTACTGAAATA-CCCTTGTAGGGT
* *
70253654 AAAATTACTGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCTTGTAGGGT
70253681 AAAATTAC
1 AAAATTAC
70253689 CATTTTGCCC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
26 8 0.15
27 38 0.70
28 8 0.15
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGTAGGGT
Found at i:70254279 original size:19 final size:19
Alignment explanation
Indices: 70254257--70254305 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
70254247 CTGATACTAG
*
70254257 TTCTAATTCTGTCACCTAA
1 TTCTGATTCTGTCACCTAA
*
70254276 TTCTGATTCTGTCACCTGA
1 TTCTGATTCTGTCACCTAA
70254295 TTCTGATTCTG
1 TTCTGATTCTG
70254306 ATTCTCATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.45
Consensus pattern (19 bp):
TTCTGATTCTGTCACCTAA
Done.