Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 208 of 362
Found at i:70254303 original size:25 final size:24
Alignment explanation
Indices: 70254225--70254310 Score: 83
Period size: 25 Copynumber: 3.7 Consensus size: 24
70254215 TTGCATTCAC
*
70254225 ATTCTGATTCTGATTCTGTTACCTG
1 ATTCT-ATTCTGATTCTGTCACCTG
* *
70254250 ATACTAGTTCTAATTCTGTCACCT-
1 ATTCTA-TTCTGATTCTGTCACCTG
70254274 A----ATTCTGATTCTGTCACCTG
1 ATTCTATTCTGATTCTGTCACCTG
70254294 ATTCTGATTCTGATTCT
1 ATTCT-ATTCTGATTCT
70254311 CATTTTGGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
19 16 0.32
20 2 0.04
24 2 0.04
25 30 0.60
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (24 bp):
ATTCTATTCTGATTCTGTCACCTG
Found at i:70260336 original size:17 final size:18
Alignment explanation
Indices: 70260288--70260337 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
70260278 GGTGATCAAA
*
70260288 TTTCATCTAATTTTGACT
1 TTTCAACTAATTTTGACT
70260306 TTTCAACTAATTTTGACT
1 TTTCAACTAATTTTGACT
70260324 TTTCAAC-AATTTTG
1 TTTCAACTAATTTTG
70260338 TCTCTCATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 7 0.23
18 24 0.77
ACGTcount: A:0.26, C:0.16, G:0.06, T:0.52
Consensus pattern (18 bp):
TTTCAACTAATTTTGACT
Found at i:70262808 original size:138 final size:139
Alignment explanation
Indices: 70262576--70262920 Score: 382
Period size: 138 Copynumber: 2.5 Consensus size: 139
70262566 GTCGATGCCG
*
70262576 TGTCCCAGACA-GGTCTTACACTGACACATATCAAGCCGATGCCATGTCCCAGACATGGTCTTAC
1 TGTCCCAGACATGGTCTTACACTGACACATATCAAGCCGATGACATGTCCCAGACATGGTCTTAC
* * **
70262640 ACTAGCTTTCACGATGTGGTTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCTGTG
66 ACTAGCTTTCACGATGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCAATG
70262705 CCAACGCCA
131 CCAACGCCA
* * * * *
70262714 TGTCCCAAACATGGTCTTACACTGACACATCTCGTAGCTGAT-ACATGTCCTAGACAT-GTCTTA
1 TGTCCCAGACATGGTCTTACACTGACACATATC-AAGCCGATGACATGTCCCAGACATGGTCTTA
* * *
70262777 CACTAGC-TT-ACG-TCCCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTC
65 CACTAGCTTTCACGAT---GAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
* *
70262839 AATGCCGATGCCA
127 AATGCCAACGCCA
* * * ***
70262852 TGTTCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG-CATGTCCCAGACAT-GTCT
1 TGTCCCAGACATGGTCTTACACT-G-ACACAT-ATCAAGCCGATGACATGTCCCAGACATGGTCT
70262915 TACACT
63 TACACT
70262921 GGCGCACATA
Statistics
Matches: 174, Mismatches: 24, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
135 1 0.01
136 3 0.02
137 2 0.01
138 94 0.54
139 34 0.20
140 39 0.22
141 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (139 bp):
TGTCCCAGACATGGTCTTACACTGACACATATCAAGCCGATGACATGTCCCAGACATGGTCTTAC
ACTAGCTTTCACGATGAGGCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATCAATG
CCAACGCCA
Found at i:70262849 original size:46 final size:45
Alignment explanation
Indices: 70262576--70262920 Score: 206
Period size: 46 Copynumber: 7.5 Consensus size: 45
70262566 GTCGATGCCG
* * *
70262576 TGTCCCAGACAGGTCTTACACT-GACACATATCAA-GCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGACTCATCTCAATGCCGATG-CA
* * * **
70262620 TGTCCCAGACATGGTCTTACACTAG-CT-TTCACGATGTGGTTGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGACTCATCTC-A-AT-GCCGATGCA
* * ** * *
70262667 TGTCCCAGACATGTCTTACACTAGCACACATATCTGTGCCAACGCCA
1 TGTCCCAGACATGTCTTACACTAG-ACTCATCTCAATGCCGATG-CA
* * * * *
70262714 TGTCCCAAACATGGTCTTACACT-GACACATCTC-GTAGCTGATACA
1 TGTCCCAGACAT-GTCTTACACTAGACTCATCTCAAT-GCCGATGCA
* * * * * *
70262759 TGTCCTAGACATGTCTTACACTAG-CTTACGTCCCGAGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGAC-T-CATCTCAATGCCGATGCA
*
70262805 TGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAG-ACTCATCTCAATGCCGATG-CA
* *
70262852 TGTTCCAGACATGGTCTTACACT-GGCTC-TCAT-AATGTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGACTCATC-TCAA--T-GCCGATGCA
70262899 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
70262921 GGCGCACATA
Statistics
Matches: 238, Mismatches: 39, Indels: 46
0.74 0.12 0.14
Matches are distributed among these distances:
44 24 0.10
45 31 0.13
46 88 0.37
47 59 0.25
48 34 0.14
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTAGACTCATCTCAATGCCGATGCA
Found at i:70272474 original size:58 final size:58
Alignment explanation
Indices: 70272334--70272480 Score: 165
Period size: 56 Copynumber: 2.6 Consensus size: 58
70272324 CCTCATAACA
* * ** * *
70272334 TATAACAGGATTACTAGTCCAGGCTAAATCCTTTTTGTAATATATGCTCAGAAGAGCT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATACTCAGAAGAGAT
* * * * *
70272392 TA-ATTAGGACTA-CAGTCCAAGCTAAATCCTAATTGTTATATATACTC-GAGAGGGAT
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATACTCAGA-AGAGAT
70272448 TATATCAGGATTACCAGTCCAGGCTAAATCCTA
1 TATATCAGGATTACCAGTCCAGGCTAAATCCTA
70272481 TCGGCAACAA
Statistics
Matches: 72, Mismatches: 14, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
55 2 0.03
56 35 0.49
57 15 0.21
58 20 0.28
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (58 bp):
TATATCAGGATTACCAGTCCAGGCTAAATCCTAATTGTAATATATACTCAGAAGAGAT
Found at i:70275468 original size:26 final size:26
Alignment explanation
Indices: 70275433--70275483 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
70275423 AATGTGAAAG
*
70275433 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
70275459 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
70275484 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:70275534 original size:103 final size:103
Alignment explanation
Indices: 70275355--70275576 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
70275345 TTGTATATAA
** * *
70275355 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
70275420 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
70275458 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
70275522 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
70275561 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
70275577 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:70275628 original size:70 final size:71
Alignment explanation
Indices: 70275496--70275645 Score: 248
Period size: 70 Copynumber: 2.1 Consensus size: 71
70275486 TCATTGGTGG
* *
70275496 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
70275561 AGGGGT
66 AGGGGT
***
70275567 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
70275631 AGGGGT
66 AGGGGT
70275637 TGCTAAGTG
1 TGCTAAGTG
70275646 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 44 0.59
71 30 0.41
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:70275641 original size:26 final size:26
Alignment explanation
Indices: 70275606--70275657 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
70275596 AAATGAAAAG
* *
70275606 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
70275632 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
70275658 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:70282858 original size:104 final size:104
Alignment explanation
Indices: 70282678--70282901 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
70282668 TGTATATAAA
** * *
70282678 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
70282743 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
70282782 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
70282846 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
70282886 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
70282902 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:70282960 original size:69 final size:71
Alignment explanation
Indices: 70282820--70282969 Score: 232
Period size: 69 Copynumber: 2.1 Consensus size: 71
70282810 TCATTGGTGG
* *
70282820 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAA-GTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
70282885 GAGGGGT
65 GAGGGGT
***
70282892 TGCTAAGTGCGATATCCATTGTATATTTGAAA-TGAAAAGGGG-TGCTATGTGCTGATTCCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
70282955 AGGGGT
66 AGGGGT
70282961 TGCTAAGTG
1 TGCTAAGTG
70282970 ATGATTCCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
69 36 0.49
70 9 0.12
72 28 0.38
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAAGTGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
AGGGGT
Found at i:70282981 original size:26 final size:26
Alignment explanation
Indices: 70282929--70282979 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
70282919 TGAAATGAAA
* *
70282929 AGGGGTGCTATGTGCTGATTCCCCCG
1 AGGGGTGCTAAGTGATGATTCCCCCG
70282955 AGGGGTTGCTAAGTGATGATTCCCC
1 AGGGG-TGCTAAGTGATGATTCCCC
70282980 GATTCAGTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.16, C:0.24, G:0.33, T:0.27
Consensus pattern (26 bp):
AGGGGTGCTAAGTGATGATTCCCCCG
Found at i:70288761 original size:31 final size:31
Alignment explanation
Indices: 70288723--70288871 Score: 235
Period size: 31 Copynumber: 4.8 Consensus size: 31
70288713 ATAAATGACA
*
70288723 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70288754 AGTGAAAAGTGGTAGCTTCGGCTACCTGATG
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
70288785 AATGAAAAGTGGTAGCTTCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
70288816 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70288847 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
70288872 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:70289044 original size:49 final size:47
Alignment explanation
Indices: 70288941--70289111 Score: 194
Period size: 49 Copynumber: 3.7 Consensus size: 47
70288931 GCTACTATAG
* * *
70288941 AAGACCATAACTGGGATATGGCATCA-GTGAGATATGTGATTCGTGT
1 AAGACCATAACTGGGCTATGGCATCATATGTGATATGTGATTCGTGT
*
70288987 AAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTGT
1 AAGACCATAACTGGGCTATGGCATC-ATATGTGATATGTGATT-CGTGT
* *
70289036 AAGACCATAACTGGGCTATGGGATCGATATATGA-A--T-A-T-GTGT
1 AAGACCATAACTGGGCTATGGCATC-ATATGTGATATGTGATTCGTGT
*
70289078 AAGACCATAGCTGGGCTATGGCATCATTATGTGA
1 AAGACCATAACTGGGCTATGGCATCA-TATGTGA
70289112 AGATGTGTAA
Statistics
Matches: 111, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 33 0.30
44 1 0.01
45 1 0.01
46 24 0.22
47 1 0.01
48 14 0.13
49 36 0.32
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (47 bp):
AAGACCATAACTGGGCTATGGCATCATATGTGATATGTGATTCGTGT
Found at i:70289129 original size:42 final size:42
Alignment explanation
Indices: 70289032--70289129 Score: 144
Period size: 42 Copynumber: 2.3 Consensus size: 42
70289022 ATGTGATTAC
* * *
70289032 GTGTAAGACCATAACTGGGCTATGGGATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
*
70289074 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
70289116 GTGTAAGACCATAG
1 GTGTAAGACCATAG
70289130 TTAAACTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 50 0.98
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:70290283 original size:10 final size:10
Alignment explanation
Indices: 70290268--70290292 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70290258 GGGCACTTTT
70290268 CAGATCTTAC
1 CAGATCTTAC
70290278 CAGATCTTAC
1 CAGATCTTAC
70290288 CAGAT
1 CAGAT
70290293 GATATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (10 bp):
CAGATCTTAC
Found at i:70291368 original size:19 final size:18
Alignment explanation
Indices: 70291344--70291417 Score: 54
Period size: 19 Copynumber: 4.4 Consensus size: 18
70291334 CCCTATTTAA
70291344 GAGTAGACTTAGTGTAATT
1 GAGTAGACTTAGTGTAA-T
*
70291363 GAGTAGAGTTAG-G-AAT
1 GAGTAGACTTAGTGTAAT
* *
70291379 -AG-A-CCCT-GTGTAAT
1 GAGTAGACTTAGTGTAAT
70291393 -AGTAGACTTAGTGTAATT
1 GAGTAGACTTAGTGTAA-T
70291411 GAGTAGA
1 GAGTAGA
70291418 GTTACATGCA
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
12 1 0.02
13 2 0.05
14 6 0.14
15 3 0.07
16 3 0.07
17 8 0.19
18 2 0.05
19 17 0.40
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (18 bp):
GAGTAGACTTAGTGTAAT
Found at i:70291381 original size:48 final size:48
Alignment explanation
Indices: 70291325--70291421 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
70291315 AAATCAAAGG
*
70291325 AGGAATAGACCCTATTTAAGAGTAGACTTAGTGTAATTGAGTAGAGTT
1 AGGAATAGACCCTATGTAAGAGTAGACTTAGTGTAATTGAGTAGAGTT
* *
70291373 AGGAATAGACCCTGTGTAATAGTAGACTTAGTGTAATTGAGTAGAGTT
1 AGGAATAGACCCTATGTAAGAGTAGACTTAGTGTAATTGAGTAGAGTT
70291421 A
1 A
70291422 CATGCAATCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
AGGAATAGACCCTATGTAAGAGTAGACTTAGTGTAATTGAGTAGAGTT
Found at i:70297103 original size:28 final size:28
Alignment explanation
Indices: 70297057--70297170 Score: 147
Period size: 28 Copynumber: 4.1 Consensus size: 28
70297047 AATACCGTTG
* *
70297057 CATACTCAATGTCTTGCACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
*
70297085 CATAATCAATATCTCGCACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
* * * * *
70297113 CATTCTCAATGTTTTGCACACTAACTGC
1 CATACTCAATATCTCGCACACTAAGTGC
*
70297141 CATACTCGATATCTCGCACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
70297169 CA
1 CA
70297171 AATTTAGCTA
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (28 bp):
CATACTCAATATCTCGCACACTAAGTGC
Found at i:70297153 original size:56 final size:56
Alignment explanation
Indices: 70297061--70297170 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
70297051 CCGTTGCATA
*
70297061 CTCAATGTCTTGCACACTAAGTGCCATAATCAATATCTCGCACACTAAGTGCCATT
1 CTCAATGTCTTGCACACTAACTGCCATAATCAATATCTCGCACACTAAGTGCCATT
* * *
70297117 CTCAATGTTTTGCACACTAACTGCCATACTCGATATCTCGCACACTAAGTGCCA
1 CTCAATGTCTTGCACACTAACTGCCATAATCAATATCTCGCACACTAAGTGCCA
70297171 AATTTAGCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.28
Consensus pattern (56 bp):
CTCAATGTCTTGCACACTAACTGCCATAATCAATATCTCGCACACTAAGTGCCATT
Found at i:70298529 original size:31 final size:31
Alignment explanation
Indices: 70298489--70298562 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
70298479 CGGGTTAGGG
* *
70298489 ACACAGGCGTGTATGACCACACGGCCTACCC
1 ACACGGGCGTGTATGACCACACGACCTACCC
* *
70298520 ACACGGGCGTGTATGTCCACACGACCTGCCC
1 ACACGGGCGTGTATGACCACACGACCTACCC
70298551 ACACGGGCGTGT
1 ACACGGGCGTGT
70298563 GACCCCTGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.22, C:0.36, G:0.27, T:0.15
Consensus pattern (31 bp):
ACACGGGCGTGTATGACCACACGACCTACCC
Found at i:70298836 original size:5 final size:5
Alignment explanation
Indices: 70298822--70298858 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
70298812 TATCTTTTGA
*
70298822 ATTTT A-TTT ATTTT ATTTT ATGTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATT
70298859 ACTCTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:70298849 original size:15 final size:14
Alignment explanation
Indices: 70298822--70298858 Score: 65
Period size: 15 Copynumber: 2.6 Consensus size: 14
70298812 TATCTTTTGA
70298822 ATTTTATTTATTTT
1 ATTTTATTTATTTT
70298836 ATTTTATGTTATTTT
1 ATTTTAT-TTATTTT
70298851 ATTTTATT
1 ATTTTATT
70298859 ACTCTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.76
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:70299877 original size:14 final size:14
Alignment explanation
Indices: 70299858--70299887 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70299848 TTCACAATTA
*
70299858 TGTCTTTTTTATTT
1 TGTCTTTTATATTT
70299872 TGTCTTTTATATTT
1 TGTCTTTTATATTT
70299886 TG
1 TG
70299888 CATGCATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (14 bp):
TGTCTTTTATATTT
Found at i:70301332 original size:48 final size:48
Alignment explanation
Indices: 70301277--70301402 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
70301267 GTGCGAATGA
* *
70301277 TACCTTGATTTGGCTACAGGCCGTGGTTTAGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTCAGAGAGGAGT
* * *
70301325 TACCTTGATTTGACTACGGGCCATGGTATAGGTATTTCAGAGAGGATT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTCAGAGAGGAGT
* * *
70301373 TAACTTGATTTGGCTACGGGCGATGGTATA
1 TACCTTGATTTGGCTACAGGCCATGGTATA
70301403 TGTACTTATT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.33
Consensus pattern (48 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTATTTCAGAGAGGAGT
Found at i:70305800 original size:46 final size:46
Alignment explanation
Indices: 70305750--70305922 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
70305740 TTGAGCATCC
70305750 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
70305796 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCT
* * *
70305843 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
70305889 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70305923 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.55
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:70305903 original size:93 final size:93
Alignment explanation
Indices: 70305744--70305915 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70305734 GGATGATTGA
* * *
70305744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
70305809 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
70305837 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACGCCTGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
70305902 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70305916 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70311104 original size:14 final size:15
Alignment explanation
Indices: 70311076--70311104 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70311066 CTCTTTCAAG
70311076 GACAAGAATAATCCA
1 GACAAGAATAATCCA
70311091 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
70311105 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:70321436 original size:15 final size:15
Alignment explanation
Indices: 70321416--70321459 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
70321406 GAAGCCCAGA
70321416 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
**
70321431 ATAAAGAAATCCATT
1 ATAAAGAAATCCAAG
*
70321446 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
70321460 TTTACAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.14, G:0.11, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70335151 original size:47 final size:48
Alignment explanation
Indices: 70335041--70335164 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 48
70335031 TGATACCTTG
* * ** * **
70335041 ATTTGGCTACGGGCCACGGTATAGGTATTTTAGAGAAGAGTTACCTTG
1 ATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGAAGAGGTACCTCA
*
70335089 ATTTGGCTACAGGCCATGGTATAGGTACTCCAG-GATA-AGGTACCTCA
1 ATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGA-AGAGGTACCTCA
*
70335136 ATTTGGCTACGGGCCATGATATAGGTACT
1 ATTTGGCTACGGGCCATGGTATAGGTACT
70335165 TATCAATTGT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
47 36 0.55
48 29 0.45
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
ATTTGGCTACGGGCCATGGTATAGGTACTCCAGAGAAGAGGTACCTCA
Found at i:70336381 original size:22 final size:22
Alignment explanation
Indices: 70336356--70336397 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
70336346 GAATGGTATT
70336356 TGAA-TATGAATGCATAAATGTA
1 TGAAGTATGAATG-ATAAATGTA
*
70336378 TGAAGTATGTATGATAAATG
1 TGAAGTATGAATGATAAATG
70336398 ACGTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.43, C:0.02, G:0.21, T:0.33
Consensus pattern (22 bp):
TGAAGTATGAATGATAAATGTA
Found at i:70337930 original size:25 final size:25
Alignment explanation
Indices: 70337881--70337936 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
70337871 TAAATTAAAT
*
70337881 ATTT-ATCTTAATAGTATTTTATTA
1 ATTTAATCTTAATAGTATTATATTA
*
70337905 ATTTAATCTTAA-AGTGATTATCTTA
1 ATTTAATCTTAATAGT-ATTATATTA
70337930 ATATTAA
1 AT-TTAA
70337937 ATTTCATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 7 0.26
25 16 0.59
26 4 0.15
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (25 bp):
ATTTAATCTTAATAGTATTATATTA
Found at i:70342664 original size:18 final size:17
Alignment explanation
Indices: 70342636--70342669 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
70342626 GGCTTTAACC
70342636 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
70342653 CATTATCAGAATCAGAA
1 CATTA-CAGAATAAGAA
70342670 TCAGAATCAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.21
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:70342666 original size:6 final size:6
Alignment explanation
Indices: 70342657--70342704 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
70342647 AAGAAACATT
*
70342657 ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA ATCAGA ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAG
70342705 TATCTGGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 1 0.03
6 32 0.86
7 3 0.08
8 1 0.03
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:70342693 original size:31 final size:31
Alignment explanation
Indices: 70342657--70342732 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
70342647 AAGAAACATT
*
70342657 ATCAGAATCAGAATCAGAATCAGGTGACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
* *
70342688 ATCAGAATCAGAATCAGTATCTGGTAACAGA
1 ATCAGAATCAGAATCAGAATCAGGTAACAGA
* *
70342719 ATCAAAATTAGAAT
1 ATCAGAATCAGAAT
70342733 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGAATCAGGTAACAGA
Found at i:70342902 original size:28 final size:26
Alignment explanation
Indices: 70342846--70342928 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 26
70342836 CAGCATTGCT
* * * *
70342846 ACCAGAAAAGATATTGTGACAGAGTC
1 ACCAGAATAGATATTGTGGCAAAGCC
*
70342872 ACCAGATATAGATATTTGTGGCATAGCC
1 ACCAGA-ATAGATA-TTGTGGCAAAGCC
*
70342900 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAAT-AGATATTGTGGCAAAGCC
70342927 AC
1 AC
70342929 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
26 6 0.12
27 21 0.44
28 21 0.44
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (26 bp):
ACCAGAATAGATATTGTGGCAAAGCC
Found at i:70343134 original size:22 final size:22
Alignment explanation
Indices: 70343086--70343144 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70343076 GTAAATACGT
*
70343086 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
70343108 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
70343130 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
70343145 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:70343553 original size:27 final size:27
Alignment explanation
Indices: 70343523--70343683 Score: 225
Period size: 27 Copynumber: 6.0 Consensus size: 27
70343513 ATCTCGGTAA
*
70343523 TTCTACCCTATAGGGGTATTTC-AGTAT
1 TTCTACCCTACAGGGGTATTTCGA-TAT
* * *
70343550 TTCTACCTTACAAGGGTATTTCGATAA
1 TTCTACCCTACAGGGGTATTTCGATAT
*
70343577 TTCTACCCTACAGGGGTATTTCGATAA
1 TTCTACCCTACAGGGGTATTTCGATAT
* * *
70343604 TTCTACCTTATAGGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGATAT
70343631 TTCTACCCTACAGGGGTATTTCGATAT
1 TTCTACCCTACAGGGGTATTTCGATAT
*
70343658 TTCTACCCTACAAGGGTATTTCGATA
1 TTCTACCCTACAGGGGTATTTCGATA
70343684 ATTTTTTAAA
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
27 118 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (27 bp):
TTCTACCCTACAGGGGTATTTCGATAT
Found at i:70343578 original size:54 final size:54
Alignment explanation
Indices: 70343510--70343686 Score: 257
Period size: 54 Copynumber: 3.3 Consensus size: 54
70343500 TACCCCACGA
* * *
70343510 GGTATCTCGGTAATTCTACCCTATAGGGGTATTTC-AGTATTTCTACCTTACAAG
1 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA-TATTTCTACCTTACAAG
* * *
70343564 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTACCTTATAGG
1 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTTACAAG
* * *
70343618 GGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTTACAAG
70343672 GGTATTTCGATAATT
1 GGTATTTCGATAATT
70343687 TTTTAAATCG
Statistics
Matches: 108, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 107 0.99
55 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATATTTCTACCTTACAAG
Found at i:70343616 original size:81 final size:81
Alignment explanation
Indices: 70343510--70343686 Score: 282
Period size: 81 Copynumber: 2.2 Consensus size: 81
70343500 TACCCCACGA
* * *
70343510 GGTATCTCGGTAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCTTACAAGGGTATTTCGAT
1 GGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAT
*
70343575 AATTCTACCCTACAGG
66 AATTCTACCCTACAAG
* * *
70343591 GGTATTTCGATAATTCTACCTTATAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTCGAT
1 GGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAT
*
70343656 ATTTCTACCCTACAAG
66 AATTCTACCCTACAAG
70343672 GGTATTTCGATAATT
1 GGTATTTCGATAATT
70343687 TTTTAAATCG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
GGTATTTCGATAATTCTACCCTATAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGAT
AATTCTACCCTACAAG
Found at i:70343755 original size:27 final size:27
Alignment explanation
Indices: 70343723--70343984 Score: 251
Period size: 27 Copynumber: 9.7 Consensus size: 27
70343713 TCTGTAAATC
* *
70343723 AGGGGTACTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAATTTTACAAACT
* *** ** *
70343749 CGAGGGTATTTCAATAATTTTACAGGTCG
1 AG-GGGTATTTTGGTAATTTTACA-AACT
** * *
70343778 AG-GGTATTTCAGTAATTTCACAAATT
1 AGGGGTATTTTGGTAATTTTACAAACT
70343804 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
70343831 AGGGGTATTTTGATAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
*
70343858 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* * *
70343885 AGGGGTATTTTGGTAATTTCATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
70343912 AAGGGTATTTTGGTAATTTTACAAA-A
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
70343938 AAGGGTATTTTGGTGATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
70343965 AAGGGTATTTTAGTAATTTT
1 AGGGGTATTTTGGTAATTTT
70343985 GTAAATCGAG
Statistics
Matches: 197, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
26 27 0.14
27 169 0.86
29 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:70343996 original size:27 final size:27
Alignment explanation
Indices: 70343682--70344335 Score: 243
Period size: 27 Copynumber: 24.3 Consensus size: 27
70343672 GGTATTTCGA
* **
70343682 TAATTTTTTAAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * *
70343709 TAATTCTGTAAATC-AGGGGTACTTTGG
1 TAATTTTATAAATCGA-GGGTAATTTGG
* * **
70343736 TAATTTTACAAGTCGAGGGT-ATTTCAA
1 TAATTTTATAAATCGAGGGTAATTT-GG
* ** *
70343763 TAATTTTACAGGTCGAGGGT-ATTTCAG
1 TAATTTTATAAATCGAGGGTAATTT-GG
* * * *
70343790 TAATTTCACAAAT-TAGGGGTATTTTGG
1 TAATTTTATAAATCGA-GGGTAATTTGG
* * * *
70343817 TAATTTTACAAA-CTAGGGGTATTTTGA
1 TAATTTTATAAATCGA-GGGTAATTTGG
* * *
70343844 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTATAAATCGA-GGGTAATTTGG
* * *
70343871 TAATTTTACAAA-CCAGGGGTATTTTGG
1 TAATTTTATAAATCGA-GGGTAATTTGG
* * *
70343898 TAATTTCATAAA-CAAAGGGTATTTTGG
1 TAATTTTATAAATC-GAGGGTAATTTGG
* ** *
70343925 TAATTTTACAAA-AAAGGGTATTTTGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * * * *
70343951 TGATTTTATAAACCAAGGGTATTTTAG
1 TAATTTTATAAATCGAGGGTAATTTGG
* ****
70343978 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * **
70344005 TAATTCTGTAAATCGAGGGTAAAACT-G
1 TAATTTTATAAATCGAGGGT-AATTTGG
* * ***
70344032 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* ****
70344059 TAATTCTATAAATCGAGGGTAAAACAG
1 TAATTTTATAAATCGAGGGTAATTTGG
** * **
70344086 TAATTTTATAAATTAAAGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * *****
70344113 TAATTCTGTAAATCGAGGGTAAAACAA
1 TAATTTTATAAATCGAGGGTAATTTGG
* * * **
70344140 TAATTCTGTCAATCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * ***
70344167 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* ** *
70344194 TAATTTTGTAAATCGAGGGTAAAATAG
1 TAATTTTATAAATCGAGGGTAATTTGG
* ***
70344221 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * **
70344248 TAATTTTGTAACTCGAGGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAATTTGG
* * *
70344275 TAATTTTGTAAATTGAGGAT-ATTTGGG
1 TAATTTTATAAATCGAGGGTAATTT-GG
* *
70344302 TAATTTTATAAACCG-GTGGTACTTTGG
1 TAATTTTATAAATCGAG-GGTAATTTGG
70344329 TAATTTT
1 TAATTTT
70344336 GCAACTGGGG
Statistics
Matches: 524, Mismatches: 90, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
26 34 0.06
27 479 0.91
28 11 0.02
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAATTTGG
Found at i:70344008 original size:80 final size:81
Alignment explanation
Indices: 70343844--70344009 Score: 183
Period size: 80 Copynumber: 2.1 Consensus size: 81
70343834 GGTATTTTGA
* * * *
70343844 TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTCATAA
1 TAATTTTACAAACAAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCATAA
*****
70343909 ACAAAGGGTATTTTGG
66 ACAAAGGGTAAAACAG
* * **
70343925 TAATTTTACAAA-AAAGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTGTAA
1 TAATTTTACAAACAAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCATAA
*
70343989 ATC-GAGGGTAAAACAG
66 A-CAAAGGGTAAAACAG
70344005 TAATT
1 TAATT
70344010 CTGTAAATCG
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
80 57 0.81
81 13 0.19
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (81 bp):
TAATTTTACAAACAAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTCATAA
ACAAAGGGTAAAACAG
Found at i:70344035 original size:54 final size:54
Alignment explanation
Indices: 70343976--70344292 Score: 454
Period size: 54 Copynumber: 5.9 Consensus size: 54
70343966 AGGGTATTTT
**
70343976 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
70344030 TGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* ** *
70344084 AGTAATTTTATAAATTAAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
70344138 AATAATTCTGTCAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * *
70344192 GGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
70344246 GGTAATTTTGTAACTCGAGGGTAAAATGGTAATTTTGTAAATTGAGG
1 AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGG
70344293 ATATTTGGGT
Statistics
Matches: 233, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 233 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:70344313 original size:81 final size:81
Alignment explanation
Indices: 70343976--70344292 Score: 429
Period size: 81 Copynumber: 3.9 Consensus size: 81
70343966 AGGGTATTTT
* *
70343976 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACT-GTAATTCTG
1 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA-TGGTAATTCTG
70344040 TAAATCGAGGGTAAAAC
65 TAAATCGAGGGTAAAAC
* * * ** *
70344057 GGTAATTCTATAAATCGAGGGTAAAACAGTAATTTTATAAATTAAAGGTAAAATGGTAATTCTGT
1 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGT
70344122 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * ** * *
70344138 AATAATTCTGTCAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGT
*
70344203 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAAC
* * * *
70344219 AGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAACTCGAGGGTAAAATGGTAATTTTGT
1 AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGT
*
70344284 AAATTGAGG
66 AAATCGAGG
70344293 ATATTTGGGT
Statistics
Matches: 205, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
80 1 0.00
81 204 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (81 bp):
AGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:70348169 original size:19 final size:20
Alignment explanation
Indices: 70348131--70348169 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
70348121 AATTTTTGTA
*
70348131 AAAATTAATTTTGATCAAAT
1 AAAATTAATATTGATCAAAT
*
70348151 AAAATTAA-ATTGATGAAAT
1 AAAATTAATATTGATCAAAT
70348170 TAATTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
AAAATTAATATTGATCAAAT
Found at i:70356421 original size:16 final size:16
Alignment explanation
Indices: 70356400--70356432 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
70356390 ACCATAGAGA
*
70356400 AAGAAGTCTTCGGGTT
1 AAGAAGACTTCGGGTT
70356416 AAGAAGACTTCGGGTT
1 AAGAAGACTTCGGGTT
70356432 A
1 A
70356433 TGTCGCTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.27
Consensus pattern (16 bp):
AAGAAGACTTCGGGTT
Found at i:70361500 original size:27 final size:27
Alignment explanation
Indices: 70361470--70361771 Score: 342
Period size: 27 Copynumber: 11.2 Consensus size: 27
70361460 ATTACTAAAA
* *
70361470 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
70361497 TACCCTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* *
70361524 TAACCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
70361551 TACCCTTGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* * *
70361578 TACCTTTGATTTA-AAGAATTACTATTT
1 TACCCTCGATTTACAA-AATTACTGTTT
*
70361605 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
70361632 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70361659 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
70361686 TACCCTTGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
70361713 TACCCTCAATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* **
70361740 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
70361767 TACCC
1 TACCC
70361772 CTAGGGTGTT
Statistics
Matches: 237, Mismatches: 30, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
26 5 0.02
27 228 0.96
28 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:70361536 original size:54 final size:54
Alignment explanation
Indices: 70361470--70361771 Score: 383
Period size: 54 Copynumber: 5.6 Consensus size: 54
70361460 ATTACTAAAA
*
70361470 TACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
* * * * *
70361524 TAACCTCGATTTACAGAATTACTGTTTTACCCTTGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
* * * *
70361578 TACCTTTGATTTA-AAGAATTACTATTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAA-AATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
** * *
70361632 TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTA-CTGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATC-GTTT
* * * * *
70361686 TACCCTTGATTTACAGAATTATTGTTTTACCCTCAATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
* *
70361740 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACTATTTTACCC
70361772 CTAGGGTGTT
Statistics
Matches: 215, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.01
54 210 0.98
55 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTATCGTTT
Found at i:70361589 original size:81 final size:81
Alignment explanation
Indices: 70361470--70361771 Score: 387
Period size: 81 Copynumber: 3.7 Consensus size: 81
70361460 ATTACTAAAA
* * * *
70361470 TACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTA-TCGTTTTAACCTCGAT
1 TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACT-GTTTTACCCTCGAT
70361534 TTACAGAATTACTGTTT
65 TTACAGAATTACTGTTT
* * * *
70361551 TACCCTTGATTTACAAAATTA-TCGTTTTACCTTTGATTTAAAGAATTACTATTTTACCCTCGAT
1 TACCCTTAATTTACAAAATTACT-GTTTTACCCTCGATTTAAAGAATTACTGTTTTACCCTCGAT
* *
70361615 TTACAAAATTACCGTTT
65 TTACAGAATTACTGTTT
* *
70361632 TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACTGTTTTACCCTCGATT
*
70361697 TACAGAATTATTGTTT
66 TACAGAATTACTGTTT
* * **
70361713 TACCCTCAATTTACAGAATTA-TCGTTTTACCCTCGATTTATAA-AATTACCATTTTACCC
1 TACCCTTAATTTACAAAATTACT-GTTTTACCCTCGATTTA-AAGAATTACTGTTTTACCC
70361772 CTAGGGTGTT
Statistics
Matches: 192, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.01
81 187 0.97
82 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (81 bp):
TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTAAAGAATTACTGTTTTACCCTCGATT
TACAGAATTACTGTTT
Found at i:70362341 original size:6 final size:6
Alignment explanation
Indices: 70362276--70362400 Score: 60
Period size: 6 Copynumber: 20.3 Consensus size: 6
70362266 TTGCATTCGC
* * * *
70362276 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
70362325 -TCACCTA ATTCTG ATTCTG ATTTTG ATTCTG -TCACTTG TTTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
* *
70362375 ATTCTT ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
70362401 AATGTTTCTT
Statistics
Matches: 87, Mismatches: 21, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
5 5 0.06
6 70 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:70362368 original size:31 final size:31
Alignment explanation
Indices: 70362276--70362377 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 31
70362266 TTGCATTCGC
* * *
70362276 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
* * *
70362307 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
* *
70362338 ATTCTGATTTTGATTCTGTCACTTGTTTCTG
1 ATTCTGATTTTGATTCTGTCACCTGATTCTG
70362369 ATTCTGATT
1 ATTCTGATT
70362378 CTTATTTTGA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATTCTG
Found at i:70376445 original size:18 final size:17
Alignment explanation
Indices: 70376419--70376452 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
70376409 TAGGATTCAG
*
70376419 TTTTTTTTTCTTCTTCTA
1 TTTTCTTTTCTT-TTCTA
70376437 TTTTCTTTTCTTTTCT
1 TTTTCTTTTCTTTTCT
70376453 CCTCTCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCTTTTCTTTTCTA
Found at i:70376495 original size:15 final size:14
Alignment explanation
Indices: 70376475--70376514 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
70376465 TACTTCCTTT
70376475 CTTCTTCTTCTTTCC
1 CTTCTT-TTCTTTCC
*
70376490 CTTCTTTTCATTTCT
1 CTTCTTTTC-TTTCC
70376505 CTTCTTTTCT
1 CTTCTTTTCT
70376515 CTTCATCTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65
Consensus pattern (14 bp):
CTTCTTTTCTTTCC
Found at i:70383289 original size:43 final size:43
Alignment explanation
Indices: 70383241--70383365 Score: 187
Period size: 43 Copynumber: 2.9 Consensus size: 43
70383231 ACATATCATT
* * *
70383241 TCACCGGCATTATGCCTGCTAGGCACGAATGCCCGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
70383284 TCACCGGCATGAAGCCTGCTAGGCACAAAGGCCTGAATACACA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
70383327 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCTCGAATA
1 TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATA
70383366 TAATAGCAGC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.30, C:0.31, G:0.24, T:0.15
Consensus pattern (43 bp):
TCACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:70383414 original size:38 final size:38
Alignment explanation
Indices: 70383363--70383465 Score: 116
Period size: 38 Copynumber: 2.7 Consensus size: 38
70383353 GAAGGCTCGA
* * * * *
70383363 ATATAATAGCAGCACTAGGCCTGCGGGATTTATCCCGG
1 ATATAATACCAGCACGACGCCTGCGGGATTTAACCCAG
*
70383401 ATATAGTACCAGCACGACGCCTGCGGGATTTAACCCAG
1 ATATAATACCAGCACGACGCCTGCGGGATTTAACCCAG
** * *
70383439 ATATTTTACCAGCACGAAGCCTACGGG
1 ATATAATACCAGCACGACGCCTGCGGG
70383466 TCTTTAAGCC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACGACGCCTGCGGGATTTAACCCAG
Found at i:70395384 original size:27 final size:27
Alignment explanation
Indices: 70395354--70395414 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
70395344 CGACATGTAA
*
70395354 AACTACCAAAGTACTCTCGATTTACAG
1 AACTACCAAAGTACCCTCGATTTACAG
****
70395381 AACTACCGTTTTACCCTCGATTTACAG
1 AACTACCAAAGTACCCTCGATTTACAG
*
70395408 AATTACC
1 AACTACC
70395415 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.10, T:0.30
Consensus pattern (27 bp):
AACTACCAAAGTACCCTCGATTTACAG
Found at i:70395415 original size:27 final size:27
Alignment explanation
Indices: 70395369--70395845 Score: 501
Period size: 27 Copynumber: 17.7 Consensus size: 27
70395359 CCAAAGTACT
*
70395369 CTCGATTTACAGAACTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
70395396 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
70395423 CTCGATTTTTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
70395450 CTCGACTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
70395477 CTC-AGTTTACAGAATTACAATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
70395504 TTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
70395531 CTC-AGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* * *
70395558 CTCGATTTATAGAATTATCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** *
70395585 TTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
70395612 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** **
70395639 CTTAATTTACAGAATTACTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
70395666 CTCGATTTATAGAATTACTGTTTTATC
1 CTCGATTTACAGAATTACCGTTTTACC
** ***
70395693 CTTAATTTACAGAATTATTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
70395720 CTCAATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* ** * *
70395747 CTCAATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
70395774 CTTGATTTACAGAATTACTGGTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
70395801 CTC-AGTTTACAAAATTATCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
70395828 TTCGATTTATAGAATTAC
1 CTCGATTTACAGAATTAC
70395846 TGAAATACCC
Statistics
Matches: 372, Mismatches: 72, Indels: 12
0.82 0.16 0.03
Matches are distributed among these distances:
26 3 0.01
27 366 0.98
28 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:70395462 original size:81 final size:80
Alignment explanation
Indices: 70395369--70395845 Score: 569
Period size: 81 Copynumber: 5.9 Consensus size: 80
70395359 CCAAAGTACT
* * *
70395369 CTCGATTTACAGAACTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTTTA
1 CTCGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCATTTTACCCTCGATTTATA
70395434 AAATTACCGTTTTACC
65 AAATTACCGTTTTACC
* * * *
70395450 CTCGACTTACAGAATTACCGTTTTACCCTCAGTTTACAGAATTACAATTTTACCTTCGATTTACA
1 CTCGATTTACAGAATTACCGTTTTACCCTCA-TTTACAGAATTACCATTTTACCCTCGATTTATA
70395515 AAATTACCGTTTTACC
65 AAATTACCGTTTTACC
** * * * *
70395531 CTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTATCATTTTACCTTCGATTTGT
1 CTCGA-TTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCATTTTACCCTCGATTTAT
70395595 AAAATTACCGTTTTACC
64 AAAATTACCGTTTTACC
* * *
70395612 CTCGATTTATAGAATTACCGTTTTACCCTTAATTTACAGAATTACTATTTTACCCTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCC-TCATTTACAGAATTACCATTTTACCCTCGATTTATA
* * *
70395677 GAATTACTGTTTTATC
65 AAATTACCGTTTTACC
** *** * * *
70395693 CTTAATTTACAGAATTATTATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTGTA
1 CTCGATTTACAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCATTTTACCCTCGATTTATA
*
70395758 AAATTACCATTTTACC
65 AAATTACCGTTTTACC
* * * * * *
70395774 CTTGATTTACAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCATTTTACCTTCGATTTATA
1 CTCGATTTACAGAATTACCGTTTTACCCTCA-TTTACAGAATTACCATTTTACCCTCGATTTATA
*
70395839 GAATTAC
65 AAATTAC
70395846 TGAAATACCC
Statistics
Matches: 336, Mismatches: 53, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
80 4 0.01
81 329 0.98
82 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (80 bp):
CTCGATTTACAGAATTACCGTTTTACCCTCATTTACAGAATTACCATTTTACCCTCGATTTATAA
AATTACCGTTTTACC
Found at i:70395867 original size:27 final size:27
Alignment explanation
Indices: 70395837--70396034 Score: 193
Period size: 27 Copynumber: 7.3 Consensus size: 27
70395827 CTTCGATTTA
70395837 TAGAATTACTGAAATACCCCTGTAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
* *
70395864 TAGAATT-TTCGAAATACCCCTATAGGG
1 TAGAATTACT-GAAATACCCCTGTAGGG
* * * *
70395891 TAGAATTACTAAAATACCCTTATAGGA
1 TAGAATTACTGAAATACCCCTGTAGGG
**
70395918 TAGAATTACCAAAATACCCCTGTAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
* *
70395945 TAGAATTA-TCGAAACACCCTTGTAGGG
1 TAGAATTACT-GAAATACCCCTGTAGGG
* ** *
70395972 TAGAAATACCAAAATACCCCTATAGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
* * * *
70395999 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACTGAAATACCCCTGTAGGG
*
70396026 TAAAATTAC
1 TAGAATTAC
70396035 CATTTTGGCC
Statistics
Matches: 140, Mismatches: 27, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 138 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TAGAATTACTGAAATACCCCTGTAGGG
Found at i:70395895 original size:54 final size:54
Alignment explanation
Indices: 70395837--70396036 Score: 258
Period size: 54 Copynumber: 3.7 Consensus size: 54
70395827 CTTCGATTTA
* ** *
70395837 TAGAATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGG
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGG
* * * *
70395891 TAGAATTACTAAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGG
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGG
* *
70395945 TAGAATTA-TCGAAACACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGG
1 TAGAATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGG
* * * *
70395999 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCA
70396037 TTTTGGCCCT
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
TAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGG
Found at i:70395898 original size:81 final size:81
Alignment explanation
Indices: 70395836--70396033 Score: 261
Period size: 81 Copynumber: 2.4 Consensus size: 81
70395826 CCTTCGATTT
** * *
70395836 ATAGAATTACTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCCTATAGGGTAGAATTACT
1 ATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCCTATAGGGTAGAATTACT
70395901 AAAATACCCTTATAGG
66 AAAATACCCTTATAGG
* * * *
70395917 ATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCTTGTAGGGTAGAAATACC
1 ATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCCTATAGGGTAGAATTACT
*
70395982 AAAATACCCCTATAGG
66 AAAATACCCTTATAGG
* * * * * *
70395998 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTA
1 ATAGAATTACCAAAATACCCCTGTAGGGTAGAATTA
70396034 CCATTTTGGC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (81 bp):
ATAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCCTATAGGGTAGAATTACT
AAAATACCCTTATAGG
Found at i:70396291 original size:27 final size:26
Alignment explanation
Indices: 70396236--70396314 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
70396226 GGAAGCGTTC
* *
70396236 TGGTGGCTATGCCACAAATATATGTTT
1 TGGTGGCTCTGCCA-AAATATCTGTTT
*
70396263 TGGTGGCTCTACCAAAATATCTGTATT
1 TGGTGGCTCTGCCAAAATATCTGT-TT
* * *
70396290 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCAAAATATCTGTT
70396315 GACCGATCAC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 10 0.23
27 34 0.77
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCAAAATATCTGTTT
Found at i:70396418 original size:22 final size:22
Alignment explanation
Indices: 70396384--70396442 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
70396374 CCCGTTATTA
* *
70396384 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
70396406 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
70396428 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
70396443 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:70396629 original size:27 final size:27
Alignment explanation
Indices: 70396607--70396680 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
70396597 TAGGTGGGTT
*
70396607 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
70396634 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
70396661 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
70396681 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:70396805 original size:6 final size:6
Alignment explanation
Indices: 70396796--70397005 Score: 227
Period size: 6 Copynumber: 34.8 Consensus size: 6
70396786 TTGCATTCAC
* *
70396796 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
70396845 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCAG ATTCTA
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
70396894 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-CCTA
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
70396941 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATT-CTG
70396989 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
70397006 CATTTTGGTT
Statistics
Matches: 173, Mismatches: 16, Indels: 30
0.79 0.07 0.14
Matches are distributed among these distances:
5 13 0.08
6 146 0.84
7 12 0.07
8 2 0.01
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70399048 original size:27 final size:27
Alignment explanation
Indices: 70399018--70399508 Score: 562
Period size: 27 Copynumber: 18.2 Consensus size: 27
70399008 AAAGTACTCC
*
70399018 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70399045 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70399072 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70399099 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70399126 C-AGTTTATAAAATTACCGTTTTACCTT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70399153 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
70399180 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
70399207 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
70399234 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70399261 TGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
70399288 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** *
70399315 CGATTTACAGAATAACTATTTTCCCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70399342 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
70399369 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
70399396 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
70399423 TGATTTACAAAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
70399450 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
70399477 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
70399504 TGATT
1 CGATT
70399509 ATGAAATTAC
Statistics
Matches: 398, Mismatches: 54, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.02
27 386 0.97
28 6 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:70399109 original size:81 final size:81
Alignment explanation
Indices: 70399018--70399508 Score: 632
Period size: 81 Copynumber: 6.1 Consensus size: 81
70399008 AAAGTACTCC
**
70399018 CGATTTACAGAATTACTGTTTTACCCTC-GATTTATAGAATTACCGTTTTACCCTCGATTTTTAA
1 CGATTTACAGAATTACTGTTTTACCCTCAG-TTTATAGAATTACCGTTTTACCCTCGATTTACAA
70399082 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * *
70399099 CGATTTACAGAATTACTGTTTTACCCTCAGTTTATAAAATTACCGTTTTACCTTCGATTTACAGA
1 CGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATTTACAAA
70399164 ATTACCGTTTTACCCT
66 ATTACCGTTTTACCCT
* * **
70399180 C-AGTTTACAGAATTACTATTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTGTAA
1 CGA-TTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATTTACAA
70399244 AATTACCGTTTTACCCT
65 AATTACCGTTTTACCCT
* * ** *
70399261 TGATTTACAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTATTTTACCCTCGATTTACAGA
1 CGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATTTACAAA
* ** *
70399326 ATAACTATTTTCCCCT
66 ATTACCGTTTTACCCT
* * **
70399342 C-AGTTTACAGAATTACTGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCAATTTGTA
1 CGA-TTTACAGAATTACTGTTTTACCCTCAG-TTTATAGAATTACCGTTTTACCCTCGATTTACA
70399405 AAATTACCGTTTTACCCT
64 AAATTACCGTTTTACCCT
* * * * * *
70399423 TGATTTACAAAATTACTAG-TTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACAG
1 CGATTTACAGAATTACT-GTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATTTACAA
*
70399487 AATTACCATTTTACCCT
65 AATTACCGTTTTACCCT
*
70399504 TGATT
1 CGATT
70399509 ATGAAATTAC
Statistics
Matches: 355, Mismatches: 47, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.01
81 347 0.98
82 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
CGATTTACAGAATTACTGTTTTACCCTCAGTTTATAGAATTACCGTTTTACCCTCGATTTACAAA
ATTACCGTTTTACCCT
Found at i:70399543 original size:27 final size:27
Alignment explanation
Indices: 70399521--70399708 Score: 214
Period size: 27 Copynumber: 7.0 Consensus size: 27
70399511 GAAATTACTA
*
70399521 AAATACCCCTGTAGGGTAGAATTTCCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
70399548 AAATACCCCTATAGAGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
70399575 AAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
70399602 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
70399629 AAACACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
*
70399656 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
70399683 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
70399709 ATTTTGCCCC
Statistics
Matches: 132, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:70399581 original size:54 final size:54
Alignment explanation
Indices: 70399513--70399709 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
70399503 TTGATTATGA
* * * * *
70399513 AATTACTAAAATACCCCTGTAGGGTAGAATTTCCGAAATACCCCTATAGAGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
70399567 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* *
70399621 AATTA-TCGAAACACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * * *
70399675 AATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
70399710 TTTTGCCCCT
Statistics
Matches: 122, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 121 0.99
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:70399614 original size:81 final size:81
Alignment explanation
Indices: 70399513--70399706 Score: 237
Period size: 81 Copynumber: 2.4 Consensus size: 81
70399503 TTGATTATGA
* * * **
70399513 AATTACTAAAATACCCCTGTAGGGTAGAATT-TCCGAAATACCCCTATAGAGTAGAATTACTGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTAT-CGAAACACCCCTATAGAGTAGAAATACCAAA
*
70399577 ATACCCTTATAGGATAG
65 ATACCCCTATAGGATAG
* * *
70399594 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCTTGTAGGGTAGAAATACCAAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCCTATAGAGTAGAAATACCAAAA
*
70399659 TACCCCTATAGGGTAG
66 TACCCCTATAGGATAG
* * * * *
70399675 AATTACCGAGATACCCTTGTGGGGTAAAATTA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTA
70399707 CCATTTTGCC
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 96 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAACACCCCTATAGAGTAGAAATACCAAAA
TACCCCTATAGGATAG
Found at i:70399945 original size:27 final size:27
Alignment explanation
Indices: 70399907--70399989 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
70399897 CGGAGGAAGC
*
70399907 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
70399934 GTTCTGGTGGCTCTGCCA-AAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
70399960 GTATTTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
70399987 GTT
1 GTT
70399990 GACCGATCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:70400091 original size:22 final size:22
Alignment explanation
Indices: 70400059--70400117 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70400049 CCCGTTATTA
*
70400059 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
70400081 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
70400103 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
70400118 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:70400304 original size:27 final size:27
Alignment explanation
Indices: 70400282--70400350 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
70400272 TAGGTGGGTT
*
70400282 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
70400309 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
70400336 TGTCACGATATCTGT
1 TGCCACAATATCTGT
70400351 TCTAAAAGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:70400482 original size:6 final size:6
Alignment explanation
Indices: 70400473--70400730 Score: 187
Period size: 6 Copynumber: 42.5 Consensus size: 6
70400463 TTGCATTCAC
* * * *
70400473 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG -TTACTA ATACTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATT-CTG ATTCTG
* *
70400522 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
70400571 ATTCTG ATTCAG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
* * * *
70400619 ATTCTG -TTACTT ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTTTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
70400668 ATTCTG ATTCT- ATCACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG AT-TCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
70400716 ATTCTG ATTCTG ATT
1 ATTCTG ATTCTG ATT
70400731 TTCATTTTGG
Statistics
Matches: 200, Mismatches: 28, Indels: 48
0.72 0.10 0.17
Matches are distributed among these distances:
5 17 0.09
6 163 0.81
7 16 0.08
8 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70400609 original size:73 final size:73
Alignment explanation
Indices: 70400473--70400624 Score: 195
Period size: 73 Copynumber: 2.1 Consensus size: 73
70400463 TTGCATTCAC
* * *
70400473 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCAGTTACTAATACTGATTCTAATTCTGATTC
70400538 TG-TTACTG
66 TGATT-CTG
* *
70400546 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCAGATT-CTGATTCTG-TTACTAATAT-TGA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCAG-TTACTAATACTGATT-CTAAT-TCTGA
70400608 TTCTGATTCTG
63 TTCTGATTCTG
70400619 ATTCTG
1 ATTCTG
70400625 TTACTTATTC
Statistics
Matches: 70, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
72 2 0.03
73 63 0.90
74 5 0.07
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (73 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCAGTTACTAATACTGATTCTAATTCTGATTC
TGATTCTG
Found at i:70400610 original size:85 final size:85
Alignment explanation
Indices: 70400498--70400730 Score: 412
Period size: 85 Copynumber: 2.7 Consensus size: 85
70400488 CTGTCACGTA
*
70400498 ATTCTGATTCTGTTACTAATACTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
70400563 GTCACCTAATTCTGATTCAG
66 GTCACCTAATTCTGATTCAG
*
70400583 ATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTTATTCTGATTCTGATTCT
1 ATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
**
70400648 GTCACCTAATTCTGATTTTG
66 GTCACCTAATTCTGATTCAG
* *
70400668 ATTCTGATTCTATCACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATT
1 ATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATT
70400731 TTCATTTTGG
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 141 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGTTACTAATATTGATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCT
GTCACCTAATTCTGATTCAG
Found at i:70406229 original size:32 final size:32
Alignment explanation
Indices: 70406163--70406230 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
70406153 TTTTTGCTAA
* *
70406163 TGTTGGATTCTAAAATTTTAGTTTATTATATT
1 TGTTGGATTCTAAAATTTTAGTCTATGATATT
*
70406195 TGTTGGATTCTGAAATTATTATGTCT-TGAT-TT
1 TGTTGGATTCTAAAATT-TTA-GTCTATGATATT
70406227 TGTT
1 TGTT
70406231 AGATATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
32 22 0.71
33 6 0.19
34 3 0.10
ACGTcount: A:0.24, C:0.04, G:0.16, T:0.56
Consensus pattern (32 bp):
TGTTGGATTCTAAAATTTTAGTCTATGATATT
Found at i:70406256 original size:27 final size:27
Alignment explanation
Indices: 70406226--70406298 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
70406216 TGTCTTGATT
70406226 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
70406253 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
70406285 TTGTTGGATATTGA
1 TTGTTAGATATTGA
70406299 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:70406278 original size:32 final size:32
Alignment explanation
Indices: 70406239--70406299 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
70406229 TTAGATATTG
70406239 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
70406271 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
70406300 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:70407316 original size:22 final size:22
Alignment explanation
Indices: 70407248--70407336 Score: 83
Period size: 22 Copynumber: 4.0 Consensus size: 22
70407238 GATACTTTTA
70407248 ATGTGGTGTAATATTAGTTATGC
1 ATGTGGTGTAATATTAGTTAT-C
** *
70407271 ACT-TGG-ACAATATTGTTGTTATC
1 A-TGTGGTGTAATA-T-TAGTTATC
70407294 ATGTGGTGTAATATTAGTTATC
1 ATGTGGTGTAATATTAGTTATC
* *
70407316 ATATGGTTTAATATTAGTTAT
1 ATGTGGTGTAATATTAGTTAT
70407337 GCACTTGGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
22 31 0.58
23 11 0.21
24 11 0.21
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (22 bp):
ATGTGGTGTAATATTAGTTATC
Found at i:70407396 original size:68 final size:68
Alignment explanation
Indices: 70407251--70407399 Score: 210
Period size: 68 Copynumber: 2.2 Consensus size: 68
70407241 ACTTTTAATG
* * *
70407251 TGGTGTAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATATTAGTTATC
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
70407316 ATA
66 ATA
* * *
70407319 TGGTTTAATATTAGTTATGCACTTGGATAATGTTGTTGTTATCATGTGGTGTAATACTAATTATG
1 TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTAT-
* *
70407384 TATT
65 CATA
70407388 TGG-ATAATATTA
1 TGGTATAATATTA
70407400 TTAATTTCTA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
68 67 0.93
69 5 0.07
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (68 bp):
TGGTATAATATTAGTTATGCACTTGGACAATATTGTTGTTATCATGTGGTGTAATACTAATTATC
ATA
Found at i:70407811 original size:14 final size:14
Alignment explanation
Indices: 70407792--70407858 Score: 98
Period size: 14 Copynumber: 4.7 Consensus size: 14
70407782 CCAGAAAAGT
70407792 AAATCATTTTCCAG
1 AAATCATTTTCCAG
70407806 AAATCATTTTCCAAG
1 AAATCATTTTCC-AG
*
70407821 AAATTATTTTCCAG
1 AAATCATTTTCCAG
*
70407835 AAATCATTTTCTAG
1 AAATCATTTTCCAG
*
70407849 AAAACATTTT
1 AAATCATTTT
70407859 ACCTGCAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 35 0.73
15 13 0.27
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:70410080 original size:43 final size:43
Alignment explanation
Indices: 70410032--70410186 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 43
70410022 TGTGTTTTCA
* *
70410032 TGTAAGACCACGTCTGGGACTTTGGCATCAATATGTGGTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCAGTATGTGGTTACG
* * * * * *
70410075 TGTAAGACCATGTTTGGGACATCGGTATC-GTATTTGATT-CG
1 TGTAAGACCACGTCTGGGACATTGGCATCAGTATGTGGTTACG
* * * *
70410116 TGTAAGACC-CTGTCTGGGACAGTGGCATCAGTATG-AGATAGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCAGTATGTGGTTA-CG
* **
70410159 TGTAAGACCACGTTTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
70410187 TGTTGTGATA
Statistics
Matches: 85, Mismatches: 22, Indels: 10
0.73 0.19 0.09
Matches are distributed among these distances:
41 26 0.31
42 11 0.13
43 47 0.55
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCAGTATGTGGTTACG
Found at i:70411279 original size:22 final size:21
Alignment explanation
Indices: 70411233--70411280 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
70411223 ATTTGATGTA
* *
70411233 TATATATTGGTTTATTAAATG
1 TATATATTGGCTTATTAAAAG
*
70411254 -ATATTTTGGCTTATTATAAAG
1 TATATATTGGCTTATTA-AAAG
70411275 TATATA
1 TATATA
70411281 AAATTTGTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
20 14 0.67
21 3 0.14
22 4 0.19
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (21 bp):
TATATATTGGCTTATTAAAAG
Found at i:70413315 original size:45 final size:45
Alignment explanation
Indices: 70413215--70413531 Score: 455
Period size: 45 Copynumber: 7.1 Consensus size: 45
70413205 TTTTCTCAAA
* * *
70413215 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* *
70413257 TCACCGGCATTATAGCCTGTTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAATATC
70413302 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
70413347 TCCCCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
70413392 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* * * *
70413437 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCTCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
70413482 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
70413527 TCACC
1 TCACC
70413532 AGTTCTTTCC
Statistics
Matches: 254, Mismatches: 15, Indels: 9
0.91 0.05 0.03
Matches are distributed among these distances:
42 11 0.04
43 13 0.05
44 8 0.03
45 221 0.87
46 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:70416834 original size:18 final size:18
Alignment explanation
Indices: 70416811--70416845 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
70416801 TGCGACGACG
70416811 GCATCCC-AGTGGCTGACA
1 GCATCCCGA-TGGCTGACA
70416829 GCATCCCGATGGCTGAC
1 GCATCCCGATGGCTGAC
70416846 GACGGTTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (18 bp):
GCATCCCGATGGCTGACA
Found at i:70417471 original size:14 final size:13
Alignment explanation
Indices: 70417436--70417467 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70417426 TTTTTCATTC
*
70417436 TGTTTTCAAAACT
1 TGTTTTCCAAACT
70417449 TGTTTTCCAAACT
1 TGTTTTCCAAACT
70417462 TGTTTT
1 TGTTTT
70417468 TCCAGCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.16, G:0.09, T:0.53
Consensus pattern (13 bp):
TGTTTTCCAAACT
Found at i:70417734 original size:36 final size:36
Alignment explanation
Indices: 70417687--70417755 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
70417677 AAATAAACCG
70417687 TGGACTATCATATCCACGTAGGGCTATTTTTTATCA
1 TGGACTATCATATCCACGTAGGGCTATTTTTTATCA
*
70417723 TGGACTATCATATCCATGTAGGGCTATTTTTTA
1 TGGACTATCATATCCACGTAGGGCTATTTTTTA
70417756 AAAGAATTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (36 bp):
TGGACTATCATATCCACGTAGGGCTATTTTTTATCA
Found at i:70419710 original size:18 final size:18
Alignment explanation
Indices: 70419687--70419721 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70419677 CCCTTCTCCT
* *
70419687 CTAAGGGGAAATAGAAAG
1 CTAAGGGAAAAAAGAAAG
70419705 CTAAGGGAAAAAAGAAA
1 CTAAGGGAAAAAAGAAA
70419722 CCGGGTAGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.29, T:0.09
Consensus pattern (18 bp):
CTAAGGGAAAAAAGAAAG
Found at i:70423068 original size:26 final size:26
Alignment explanation
Indices: 70423032--70423082 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
70423022 AAACATGTAA
*
70423032 TTGTTTTCTATTTAATTGAACGATAT
1 TTGTTTTCTATTTAATTGAAAGATAT
*
70423058 TTGTTTTCTATTTATTTGAAAGATA
1 TTGTTTTCTATTTAATTGAAAGATA
70423083 AATAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (26 bp):
TTGTTTTCTATTTAATTGAAAGATAT
Found at i:70423118 original size:19 final size:19
Alignment explanation
Indices: 70423094--70423138 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
70423084 ATAAATAAAG
70423094 TTAATTTCACATTTCACTA
1 TTAATTTCACATTTCACTA
70423113 TTAATTTCACATTTCACTA
1 TTAATTTCACATTTCACTA
70423132 TT-ATTTC
1 TTAATTTC
70423139 TTTTTTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAATTTCACATTTCACTA
Found at i:70435123 original size:20 final size:21
Alignment explanation
Indices: 70435080--70435125 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
70435070 ACTGTTTTGT
70435080 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
70435100 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
70435119 TATGGGC
1 TATGGGC
70435126 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:70435218 original size:60 final size:61
Alignment explanation
Indices: 70435153--70435266 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 61
70435143 GACTTGTAAT
*
70435153 AGGGCTACGACCCAGATTGACACTGATATGGGCTAA-GCCCAG-TATACTCTGATACTATAA
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATACTATAA
* * * * *
70435213 AGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCTCAGTTAACTCTGAT
1 AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
70435267 TTCTGAATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 31 0.67
61 13 0.28
62 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (61 bp):
AGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATACTATAA
Found at i:70435588 original size:34 final size:34
Alignment explanation
Indices: 70435543--70435615 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
70435533 GTTTTTAGTA
70435543 TGTTTTGTTAGCTTAGATATGATATTGTTTTAAC
1 TGTTTTGTTAGCTTAGATATGATATTGTTTTAAC
*
70435577 TGTTTTTTTAGCTTAGATATGATATTGTTTTAAC
1 TGTTTTGTTAGCTTAGATATGATATTGTTTTAAC
70435611 TGTTT
1 TGTTT
70435616 GAAATTGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.22, C:0.05, G:0.16, T:0.56
Consensus pattern (34 bp):
TGTTTTGTTAGCTTAGATATGATATTGTTTTAAC
Found at i:70439252 original size:20 final size:21
Alignment explanation
Indices: 70439209--70439254 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
70439199 ACTATTTTGT
70439209 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
70439229 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
70439248 TATGGGC
1 TATGGGC
70439255 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:70439346 original size:60 final size:62
Alignment explanation
Indices: 70439276--70439395 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 62
70439266 TATCTCGACT
*
70439276 TGTAATAGGGCTACGACCCAGATTGACACTGATATGGGCTAA-GCCCAG-TATACTCTGATAC
1 TGTAATAGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTA-ACTCTGATAC
* * * *
70439337 TGTAA-AGGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGTTAACTCTGAT
1 TGTAATAGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGAT
70439396 TTCTGAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
60 31 0.60
61 19 0.37
62 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (62 bp):
TGTAATAGGGCTACGACCCAGATTAACACTGATATGGGCTAAGGCCCAGTTAACTCTGATAC
Found at i:70453643 original size:9 final size:9
Alignment explanation
Indices: 70453618--70453678 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
70453608 TTCATATCCT
*
70453618 TCTCTCAAC
1 TCTCTCAAA
* *
70453627 TCTATCAAT
1 TCTCTCAAA
70453636 TCTCTCAAAA
1 TCTCTC-AAA
70453646 TCTCTCAAA
1 TCTCTCAAA
* *
70453655 CCTTCTCAAG
1 TC-TCTCAAA
*
70453665 TCTCTCAAC
1 TCTCTCAAA
70453674 TCTCT
1 TCTCT
70453679 TGTTTTTAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 27 0.64
10 15 0.36
ACGTcount: A:0.26, C:0.36, G:0.02, T:0.36
Consensus pattern (9 bp):
TCTCTCAAA
Found at i:70454912 original size:98 final size:98
Alignment explanation
Indices: 70454793--70454986 Score: 379
Period size: 98 Copynumber: 2.0 Consensus size: 98
70454783 ATCAACGATC
70454793 AGAATTAGTTACACATTCTTTCGGACCTATATTAATTACATAATGATTTGTAAAAAAATTCATAA
1 AGAATTAGTTACACATTCTTTCGGACCTATATTAATTACATAATGATTTGTAAAAAAATTCATAA
70454858 ATAATTATATTTAAAATTTTGCTTATCAGTTCT
66 ATAATTATATTTAAAATTTTGCTTATCAGTTCT
*
70454891 AGAATTAGTTACATATTCTTTCGGACCTATATTAATTACATAATGATTTGTAAAAAAATTCATAA
1 AGAATTAGTTACACATTCTTTCGGACCTATATTAATTACATAATGATTTGTAAAAAAATTCATAA
70454956 ATAATTATATTTAAAATTTTGCTTATCAGTT
66 ATAATTATATTTAAAATTTTGCTTATCAGTT
70454987 TGAATGGATG
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.42
Consensus pattern (98 bp):
AGAATTAGTTACACATTCTTTCGGACCTATATTAATTACATAATGATTTGTAAAAAAATTCATAA
ATAATTATATTTAAAATTTTGCTTATCAGTTCT
Found at i:70458499 original size:21 final size:21
Alignment explanation
Indices: 70458473--70458513 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70458463 ATTTAAACAC
70458473 TTCAACACA-TTTAGAATATGT
1 TTCAACACACTTT-GAATATGT
*
70458494 TTCAACGCACTTTGAATATG
1 TTCAACACACTTTGAATATG
70458514 ATCATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (21 bp):
TTCAACACACTTTGAATATGT
Found at i:70461724 original size:46 final size:46
Alignment explanation
Indices: 70461657--70461826 Score: 295
Period size: 46 Copynumber: 3.7 Consensus size: 46
70461647 ATGGAATGTG
70461657 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
*
70461703 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
* **
70461749 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
70461796 TAAGACCATGGTTGAAAGATACCATGGCAAC
1 TAAGACCATGGTTGAAAGATACCATGGCAAC
70461827 ATGATAGAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 81 0.69
47 37 0.31
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
Found at i:70461811 original size:47 final size:46
Alignment explanation
Indices: 70461657--70461864 Score: 290
Period size: 46 Copynumber: 4.5 Consensus size: 46
70461647 ATGGAATGTG
* *
70461657 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
* * *
70461703 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
*
70461749 TAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGG-AAATGAA
* * * *
70461796 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAAACGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAG-GAAATGAA
* *
70461843 TAAAACCATAGTTGAAAGATAC
1 TAAGACCATGGTTGAAAGATAC
70461865 TATGACATCA
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 81 0.55
47 67 0.45
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAA
Found at i:70464591 original size:169 final size:169
Alignment explanation
Indices: 70464308--70464652 Score: 665
Period size: 169 Copynumber: 2.0 Consensus size: 169
70464298 TGGAGTAAGA
*
70464308 CAAA-CTTTGGAAGACCAACGTGCTAGAAGTATGAAGAGCAGAACACGAGGGGTTGATCTCCGTA
1 CAAAGCTTTGGAAGACCAAAGTGCTAGAAGTATGAAGAGCAGAACACGAGGGGTTGATCTCCGTA
*
70464372 GCTTCAGAGCGCAAATGCCAAAAGAGCATAGTCATCAGAGAGAAAGTACAGTTGACAGGGTGCGC
66 GCTTCAGAGCGCAAATGCCAAAAGAGCATAGTCATCAGAGAGAAAGTACAGTCGACAGGGTGCGC
70464437 AATTGATGTTAGTGTTGCTACAGTGAACTCTACTACAGC
131 AATTGATGTTAGTGTTGCTACAGTGAACTCTACTACAGC
70464476 CAAAGCTTTGGAAGACCAAAGTGCTAGAAGTATGAAGAGCAGAACACGAGGGGTTGATCTCCGTA
1 CAAAGCTTTGGAAGACCAAAGTGCTAGAAGTATGAAGAGCAGAACACGAGGGGTTGATCTCCGTA
70464541 GCTTCAGAGCGCAAATGCCAAAAGAGCATAGTCATCAGAGAGAAAGTACAGTCGACAGGGTGCGC
66 GCTTCAGAGCGCAAATGCCAAAAGAGCATAGTCATCAGAGAGAAAGTACAGTCGACAGGGTGCGC
70464606 AATTGATGTTAGTGTTGCTACAGTGAACTCTACTACAGC
131 AATTGATGTTAGTGTTGCTACAGTGAACTCTACTACAGC
70464645 CAAAGCTT
1 CAAAGCTT
70464653 GATTCAAGTC
Statistics
Matches: 174, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
168 4 0.02
169 170 0.98
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.21
Consensus pattern (169 bp):
CAAAGCTTTGGAAGACCAAAGTGCTAGAAGTATGAAGAGCAGAACACGAGGGGTTGATCTCCGTA
GCTTCAGAGCGCAAATGCCAAAAGAGCATAGTCATCAGAGAGAAAGTACAGTCGACAGGGTGCGC
AATTGATGTTAGTGTTGCTACAGTGAACTCTACTACAGC
Found at i:70472297 original size:26 final size:27
Alignment explanation
Indices: 70472245--70472297 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
70472235 TTTTATATAA
* *
70472245 AAATATAAAAAGTATTTGTTATTTTTT
1 AAATATAAAAAGTATTTGTAATATTTT
70472272 AAATATAAAAA-TATTT-TAATCATTTT
1 AAATATAAAAAGTATTTGTAAT-ATTTT
70472298 GATTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 3 0.13
26 9 0.39
27 11 0.48
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (27 bp):
AAATATAAAAAGTATTTGTAATATTTT
Found at i:70474206 original size:16 final size:16
Alignment explanation
Indices: 70474173--70474209 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
70474163 TATTTGTTAG
70474173 TTTAATAATTAAATTT
1 TTTAATAATTAAATTT
*
70474189 TTTAA-AATTAAATAT
1 TTTAATAATTAAATTT
70474204 TTTAAT
1 TTTAAT
70474210 CACTCTCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTAATAATTAAATTT
Found at i:70477464 original size:142 final size:142
Alignment explanation
Indices: 70477208--70477488 Score: 526
Period size: 142 Copynumber: 2.0 Consensus size: 142
70477198 TGAGTTCATT
70477208 CTTGCTTCCATGTGGTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
1 CTTGCTTCCATGTGGTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
* *
70477273 AAAGGATGACTAGTATTTGTATGTGTGAATAATGGTTGTCTGTCTAGAGTTATTAGTTTGAGTTC
66 AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
70477338 TGTATGTCTGAG
131 TGTATGTCTGAG
*
70477350 CTTGCTTCCATGTGTTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
1 CTTGCTTCCATGTGGTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
*
70477415 AAAGGATGACCAGTGTTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
66 AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
70477480 TGTATGTCT
131 TGTATGTCT
70477489 AAGAAAAAAA
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
142 135 1.00
ACGTcount: A:0.23, C:0.11, G:0.22, T:0.44
Consensus pattern (142 bp):
CTTGCTTCCATGTGGTGTGATTATCTTTACTTTATAATATTGTAAGGTAAGTATTCTTACTCTGT
AAAGGATGACCAGTATTTGTATGTGTGAATAATGGTTGTCTGTCCAGAGTTATTAGTTTGAGTTC
TGTATGTCTGAG
Found at i:70487464 original size:39 final size:39
Alignment explanation
Indices: 70487410--70487486 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
70487400 ATGAGGAGAT
70487410 GTGTAGGGCTTGAGGTCAAATTGAATGAATGTACCTTAA
1 GTGTAGGGCTTGAGGTCAAATTGAATGAATGTACCTTAA
*
70487449 GTGTAGGGCTTGAGGTCAAATTGAATGAATGTGCCTTA
1 GTGTAGGGCTTGAGGTCAAATTGAATGAATGTACCTTA
70487487 CATAGTTACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.29, C:0.10, G:0.30, T:0.31
Consensus pattern (39 bp):
GTGTAGGGCTTGAGGTCAAATTGAATGAATGTACCTTAA
Found at i:70489003 original size:29 final size:31
Alignment explanation
Indices: 70488954--70489015 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 31
70488944 AATGTGTATC
* *
70488954 TATTTATTTGATGGATGAAAT-T-GAGATAT
1 TATTTATTTAATAGATGAAATGTGGAGATAT
70488983 TATTTATTGTAATAGAT-AAATGTGGAGATAT
1 TATTTATT-TAATAGATGAAATGTGGAGATAT
70489014 TA
1 TA
70489016 AATTTAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 12 0.43
30 7 0.25
31 9 0.32
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAT
Found at i:70489388 original size:33 final size:33
Alignment explanation
Indices: 70489349--70489414 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
70489339 TTATGTTAGC
70489349 TCATTGATTGATGCTTTAAATGTTAATTATGTT
1 TCATTGATTGATGCTTTAAATGTTAATTATGTT
70489382 TCATTGATTGATGCTTTAAATGTTAATTATGTT
1 TCATTGATTGATGCTTTAAATGTTAATTATGTT
70489415 ATCCATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.06, G:0.15, T:0.52
Consensus pattern (33 bp):
TCATTGATTGATGCTTTAAATGTTAATTATGTT
Found at i:70491163 original size:28 final size:28
Alignment explanation
Indices: 70491097--70491224 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
70491087 CATGAGATTG
* * **
70491097 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
70491126 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70491154 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
70491183 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70491211 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70491225 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70491186 original size:57 final size:57
Alignment explanation
Indices: 70491097--70491224 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
70491087 CATGAGATTG
*
70491097 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
70491154 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
70491211 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70491225 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:70499198 original size:29 final size:28
Alignment explanation
Indices: 70499151--70499276 Score: 90
Period size: 29 Copynumber: 4.4 Consensus size: 28
70499141 CATGAGATTG
*** *
70499151 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGAAAGTTT-AATTACATA
* *
70499180 GCACTAAGTGTGAAAGTTTGATTATATA
1 GCACTAAGTGTGAAAGTTTAATTACATA
** * **
70499208 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGAAAGTTTAATTACAT-A
** * *
70499237 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGAAAGTTTAATTACATA
*
70499265 ACACTAAGTGTG
1 GCACTAAGTGTG
70499277 CGGACTTACT
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 42 0.49
29 43 0.51
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGAAAGTTTAATTACATA
Found at i:70499217 original size:28 final size:28
Alignment explanation
Indices: 70499151--70499278 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
70499141 CATGAGATTG
* * **
70499151 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
**
70499180 GCACTAAGTGTGAAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70499208 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
70499237 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70499265 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70499279 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70499240 original size:57 final size:57
Alignment explanation
Indices: 70499151--70499278 Score: 177
Period size: 57 Copynumber: 2.2 Consensus size: 57
70499141 CATGAGATTG
*
70499151 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGAAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGAAAGTTTGATTATATA
* * * **
70499208 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGAAAGTTTGATTATATA
*
70499265 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
70499279 GACTTACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGAAAGTTTGATTATATA
Found at i:70499571 original size:13 final size:13
Alignment explanation
Indices: 70499553--70499579 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70499543 TACCATGTTG
70499553 AGTAGCATATGAA
1 AGTAGCATATGAA
70499566 AGTAGCATATGAA
1 AGTAGCATATGAA
70499579 A
1 A
70499580 AATTGATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.22, T:0.22
Consensus pattern (13 bp):
AGTAGCATATGAA
Found at i:70503795 original size:50 final size:50
Alignment explanation
Indices: 70503627--70503949 Score: 342
Period size: 50 Copynumber: 6.4 Consensus size: 50
70503617 TGAGAACACA
* * * * *
70503627 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG--TTAGGTCACG
* *** * * * * * *
70503679 TGTGTAGTACTAAGTGCAGGCTGCTATACGTACCCGAAAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-ATAGTTAGGTCACG
** * *
70503730 TGTGTAGTACTAAGTGTTGGCTACTACTTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * *
70503780 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
*
70503830 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
* * * * * *
70503880 TGTGTAGTACTAAATACAGGCTACTACATGTATCGGATAGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
70503929 TGTGTAGTACTAAGTGCAGGC
1 TGTGTAGTACTAAGTGCAGGC
70503950 AACCGTGTAT
Statistics
Matches: 222, Mismatches: 48, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
49 24 0.11
50 133 0.60
51 36 0.16
52 28 0.13
53 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
Found at i:70503869 original size:100 final size:99
Alignment explanation
Indices: 70503625--70503949 Score: 409
Period size: 100 Copynumber: 3.2 Consensus size: 99
70503615 TGTGAGAACA
* * * *
70503625 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACT
* * * * * *
70503690 AAGTGCAGGCTGCTATACGTACCCGAAA-ACTTCGATCA
64 AAGTGCAGGCTACTACATGTA-CC-AAATAGTT-GGTCG
* ** *
70503728 CGTGTGTAGTACTAAGTGTTGGCTACTACTTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
*
70503793 GTGCAGGCTACTACGTGTACCAAATAGTTAGGTCG
66 GTGCAGGCTACTACATGTACCAAATAGTT-GGTCG
70503828 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
* * * **
70503893 ATACAGGCTACTACATGTATCGGATAGTTGGTCG
66 GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
70503927 CATGTGTAGTACTAAGTGCAGGC
1 CATGTGTAGTACTAAGTGCAGGC
70503950 AACCGTGTAT
Statistics
Matches: 195, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
99 31 0.16
100 92 0.47
101 38 0.19
103 34 0.17
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (99 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
GTGCAGGCTACTACATGTACCAAATAGTTGGTCG
Found at i:70504136 original size:16 final size:15
Alignment explanation
Indices: 70504115--70504144 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
70504105 GAATGGAGCA
70504115 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
70504131 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
70504145 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:70515528 original size:12 final size:12
Alignment explanation
Indices: 70515513--70515537 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70515503 TGGGCGATAC
70515513 CATGGACTTAGG
1 CATGGACTTAGG
70515525 CATGGACTTAGG
1 CATGGACTTAGG
70515537 C
1 C
70515538 CGTTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (12 bp):
CATGGACTTAGG
Found at i:70515874 original size:27 final size:27
Alignment explanation
Indices: 70515811--70515881 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
70515801 AATGTACCTG
*
70515811 ACCCTTATGTGATAGAATGACAATTTT
1 ACCCTTATGTGATAAAATGACAATTTT
**
70515838 ATTCTTATGTGATAAAATGACAATTTT
1 ACCCTTATGTGATAAAATGACAATTTT
* *
70515865 GCCCTAATGTGATAAAA
1 ACCCTTATGTGATAAAA
70515882 AACTGAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (27 bp):
ACCCTTATGTGATAAAATGACAATTTT
Done.