Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 209 of 362
Found at i:70515917 original size:27 final size:25
Alignment explanation
Indices: 70515886--70515976 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 25
70515876 ATAAAAAACT
70515886 GAAATACCCTCATAGGGTCAAATGACC
1 GAAATACCCT-ATAGGGT-AAATGACC
*
70515913 TAAATATCCCTATAGGGTAGAATGACC
1 GAAATA-CCCTATAGGGTA-AATGACC
* * *
70515940 GAAATTCCCTTGTAGGGTAAAATGACT
1 GAAATACCC-TATAGGGT-AAATGACC
*
70515967 GTAATACCCT
1 GAAATACCCT
70515977 GGTAAGGTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
26 5 0.09
27 43 0.81
28 5 0.09
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (25 bp):
GAAATACCCTATAGGGTAAATGACC
Found at i:70515985 original size:27 final size:27
Alignment explanation
Indices: 70515886--70515992 Score: 81
Period size: 27 Copynumber: 4.0 Consensus size: 27
70515876 ATAAAAAACT
** * *
70515886 GAAATACCCTCATAGGGTCAAATGACC
1 GAAATACCCTGGTAAGGTAAAATGACC
* * * *
70515913 TAAATATCCCT-ATAGGGTAGAATGACC
1 GAAATA-CCCTGGTAAGGTAAAATGACC
* * * *
70515940 GAAATTCCCTTGTAGGGTAAAATGACT
1 GAAATACCCTGGTAAGGTAAAATGACC
*
70515967 GTAATACCCTGGTAAGGTAAAATGAC
1 GAAATACCCTGGTAAGGTAAAATGAC
70515993 AGATTTATTC
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.06
27 58 0.88
28 4 0.06
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCTGGTAAGGTAAAATGACC
Found at i:70516358 original size:18 final size:18
Alignment explanation
Indices: 70516335--70516392 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
70516325 TCTGCTTGTA
70516335 TACTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
* * *
70516353 TACTGCATTAATCA-TGGT
1 TACTGCACTGATTACT-GT
* *
70516371 TACTACACTGATTACTAT
1 TACTGCACTGATTACTGT
70516389 TACT
1 TACT
70516393 AAAGTGGGCT
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
17 1 0.03
18 28 0.93
19 1 0.03
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:70516422 original size:34 final size:34
Alignment explanation
Indices: 70516383--70516509 Score: 148
Period size: 34 Copynumber: 3.7 Consensus size: 34
70516373 CTACACTGAT
*
70516383 TACTATTACT-AAAGTGGGCTAAAGCCCAAACTGC
1 TACTATTACTGAAA-TGGGCTAAAGCCCAAACTAC
* *
70516417 TACTATTACTGAAATGGGCTAAAACCCAGACTAC
1 TACTATTACTGAAATGGGCTAAAGCCCAAACTAC
* * * *
70516451 TACTGTTACTGAAATGGGCTAAGGCCCATACTTC
1 TACTATTACTGAAATGGGCTAAAGCCCAAACTAC
* * *
70516485 TACTGTTACTGATATGGGCTTAAGC
1 TACTATTACTGAAATGGGCTAAAGC
70516510 TCAGAATATA
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
34 78 0.96
35 3 0.04
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAGCCCAAACTAC
Found at i:70526812 original size:27 final size:27
Alignment explanation
Indices: 70526755--70526827 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
70526745 GAAGCTTCCT
* * *
70526755 TTTCATGGATAGCTACAAAAGCCTCAT
1 TTTCATAGATAGCCACAAAAGCCTCAA
*
70526782 TTTCATAGATAGCCAC-AAAGACTTCAA
1 TTTCATAGATAGCCACAAAAG-CCTCAA
* * *
70526809 TTTCTTAAATCGCCACAAA
1 TTTCATAGATAGCCACAAA
70526828 CTCTTCCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.11
27 31 0.84
28 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
TTTCATAGATAGCCACAAAAGCCTCAA
Found at i:70529930 original size:27 final size:27
Alignment explanation
Indices: 70529900--70530060 Score: 89
Period size: 27 Copynumber: 6.0 Consensus size: 27
70529890 CTTCCTTGTT
70529900 ATAGATAGCCACAAAGATTTTCTTTTC
1 ATAGATAGCCACAAAGATTTTCTTTTC
* ** *
70529927 ATAGATATG-CAAAAAGGCTTCCTTTTC
1 ATAGATA-GCCACAAAGATTTTCTTTTC
* * * * *
70529954 ATTGATGGCCATAAAGACTTAT-GTTTC
1 ATAGATAGCCACAAAGA-TTTTCTTTTC
*
70529981 TTAGATCA-CCACAAA-ATATTTCTTTTC
1 ATAGAT-AGCCACAAAGAT-TTTCTTTTC
* *
70530008 ATAGATAGACACAAAGCA-TTTCTTTCC
1 ATAGATAGCCACAAAG-ATTTTCTTTTC
* * * **
70530035 TTAGATCGCTACAAAGGCTTTCTTTT
1 ATAGATAGCCACAAAGATTTTCTTTT
70530061 TCTGGCGTGT
Statistics
Matches: 97, Mismatches: 27, Indels: 20
0.67 0.19 0.14
Matches are distributed among these distances:
25 1 0.01
26 5 0.05
27 88 0.91
28 2 0.02
29 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (27 bp):
ATAGATAGCCACAAAGATTTTCTTTTC
Found at i:70531686 original size:104 final size:105
Alignment explanation
Indices: 70531550--70531759 Score: 352
Period size: 104 Copynumber: 2.0 Consensus size: 105
70531540 AAGATAGAAG
*
70531550 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTGATACTAAATGTTGG-AAAAA
1 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
* *
70531614 ATCTACTTTG-AAAATGATTTTCTTGCACAATAAAACATAA
66 ATCTA-ATTGAAAAATGATTTTCTTGCACAATAAAAAATAA
**
70531654 ATTTTGGTCTCGGTTTATGCTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
1 ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
70531719 ATCTAATTGAAAAATGATTTTCTTGCACAATAAAAAATAA
66 ATCTAATTGAAAAATGATTTTCTTGCACAATAAAAAATAA
70531759 A
1 A
70531760 AATTTTGAAA
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
104 59 0.60
105 40 0.40
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (105 bp):
ATTTTGGTCTCGGTTTACACTATAAGCATAGCACAACTGGCTCTAATACTAAATGTTGGAAAAAA
ATCTAATTGAAAAATGATTTTCTTGCACAATAAAAAATAA
Found at i:70536756 original size:51 final size:51
Alignment explanation
Indices: 70536693--70536823 Score: 183
Period size: 51 Copynumber: 2.6 Consensus size: 51
70536683 AGTACCATGT
* *
70536693 TGCCA-AGACATCTTTCTTCCATGGTCTTACGTTATGTACCATATACCAGAC
1 TGCCATAG-CATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGAC
* * *
70536744 TGCCATAGCATCTTTCATCCATGATTTTACGCTATGTACCATATACTAGAC
1 TGCCATAGCATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGAC
* *
70536795 TGCCATAGCCTCTTTCATCTATGGTCTTA
1 TGCCATAGCATCTTTCATCCATGGTCTTA
70536824 TGCCATATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
51 68 0.97
52 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (51 bp):
TGCCATAGCATCTTTCATCCATGGTCTTACGCTATGTACCATATACCAGAC
Found at i:70540512 original size:46 final size:46
Alignment explanation
Indices: 70540193--70540513 Score: 394
Period size: 46 Copynumber: 7.0 Consensus size: 46
70540183 TTCGACATGA
* * * * * *
70540193 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* ** *** **
70540239 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCAGGT
* * *
70540286 TGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
70540332 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
70540378 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
70540424 TGCCATGGTATCTTTCAACCACAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
70540470 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
70540514 AGAGCACACT
Statistics
Matches: 244, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
45 3 0.01
46 199 0.82
47 42 0.17
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:70542613 original size:11 final size:11
Alignment explanation
Indices: 70542597--70542648 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
70542587 TATACTAAAT
70542597 AAATAATAATA
1 AAATAATAATA
*
70542608 AAATAAT-ATT
1 AAATAATAATA
* *
70542618 AAATATCTCATA
1 AAATA-ATAATA
*
70542630 AAATATTAATA
1 AAATAATAATA
70542641 AAATAATA
1 AAATAATA
70542649 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:70546645 original size:18 final size:18
Alignment explanation
Indices: 70546618--70546678 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
70546608 TTTTTCAAGT
70546618 TTTA-TTTTAGAACTTCA
1 TTTAGTTTTAGAACTTCA
70546635 TTTAGTTTTAG---TT--
1 TTTAGTTTTAGAACTTCA
*
70546648 TTTAGTTTTTTACAACTTCA
1 TTTAG--TTTTAGAACTTCA
70546668 TTTAGTTTTAG
1 TTTAGTTTTAG
70546679 TTTTTAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 15
0.67 0.04 0.29
Matches are distributed among these distances:
13 5 0.15
15 7 0.21
17 4 0.12
18 13 0.38
20 5 0.15
ACGTcount: A:0.23, C:0.08, G:0.10, T:0.59
Consensus pattern (18 bp):
TTTAGTTTTAGAACTTCA
Found at i:70546665 original size:33 final size:33
Alignment explanation
Indices: 70546622--70546689 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
70546612 TCAAGTTTTA
*
70546622 TTTTAGAACTTCATTTAGTTTTAGTTTTTAGTT
1 TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
70546655 TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
1 TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
70546688 TT
1 TT
70546690 CTTTAGTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.21, C:0.07, G:0.10, T:0.62
Consensus pattern (33 bp):
TTTTACAACTTCATTTAGTTTTAGTTTTTAGTT
Found at i:70549760 original size:49 final size:48
Alignment explanation
Indices: 70549586--70549760 Score: 157
Period size: 49 Copynumber: 3.7 Consensus size: 48
70549576 TATTATGAGC
* *
70549586 CAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGACGAG-AG-
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGAGACG-GTAGT
** * *
70549633 CTAGTGTAAGA-CATGTCTAAAACAT-GCATCGG-CTACGAGA-TGT-GT
1 C-AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-TGAGACGGTAGT
* * * * *
70549678 CAGTGTAAGACCGTGTCTGGGACATGACGTCGGCCTTGATAACGGTAGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGA-GACGGTAGT
*
70549727 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGC
70549761 ATTCTACGCC
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
44 11 0.11
45 12 0.12
46 17 0.17
47 16 0.16
48 11 0.11
49 33 0.33
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTTGAGACGGTAGT
Found at i:70552571 original size:23 final size:23
Alignment explanation
Indices: 70552539--70552633 Score: 78
Period size: 23 Copynumber: 4.3 Consensus size: 23
70552529 AAAAACCTTT
70552539 AATG-ATAATAATATATAGATAA
1 AATGTATAATAATATATAGATAA
*
70552561 AATGTATAAT-A-ATAT-GAAAA
1 AATGTATAATAATATATAGATAA
*
70552581 AATGACATAATAATATATA-ATAA
1 AATG-TATAATAATATATAGATAA
* * *
70552604 AAT-AATTATAATATATAATATAA
1 AATGTATAATAATATAT-AGATAA
70552627 AAT-TATA
1 AATGTATA
70552634 TATGTAAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
20 8 0.14
21 20 0.34
22 7 0.12
23 24 0.41
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (23 bp):
AATGTATAATAATATATAGATAA
Found at i:70552602 original size:7 final size:7
Alignment explanation
Indices: 70552590--70552791 Score: 90
Period size: 7 Copynumber: 29.1 Consensus size: 7
70552580 AAATGACATA
70552590 ATAATAT
1 ATAATAT
*
70552597 ATAATAAA
1 ATAAT-AT
70552605 ATAAT-T
1 ATAATAT
70552611 ATAATAT
1 ATAATAT
70552618 ATAATAT
1 ATAATAT
*
70552625 AAAAT-T
1 ATAATAT
70552631 AT-ATAT
1 ATAATAT
*
70552637 GTAA-A-
1 ATAATAT
*
70552642 AAAATAT
1 ATAATAT
70552649 ATAATAT
1 ATAATAT
*
70552656 AT-ATAA
1 ATAATAT
70552662 ATAAT-T
1 ATAATAT
70552668 AATAAATAT
1 -AT-AATAT
*
70552677 ATAATACA
1 ATAATA-T
*
70552685 AGTAAAAAT
1 A-T-AATAT
70552694 ATAATA-
1 ATAATAT
70552700 ATAATAT
1 ATAATAT
70552707 ATAA-AT
1 ATAATAT
*
70552713 AATAATGGAAA
1 -ATAAT---AT
70552724 ATAATA-
1 ATAATAT
*
70552730 ATAATTT
1 ATAATAT
* *
70552737 GTGAA-AA
1 AT-AATAT
70552744 ATAATAT
1 ATAATAT
*
70552751 ATAATAA
1 ATAATAT
70552758 ATAATAAT
1 ATAAT-AT
70552766 ATAA-AT
1 ATAATAT
70552772 AT--TAT
1 ATAATAT
70552777 ATAATAT
1 ATAATAT
70552784 ATAATAT
1 ATAATAT
70552791 A
1 A
70552792 AAAATAAGGT
Statistics
Matches: 146, Mismatches: 23, Indels: 52
0.66 0.10 0.24
Matches are distributed among these distances:
5 8 0.05
6 35 0.24
7 71 0.49
8 20 0.14
9 3 0.02
10 8 0.05
11 1 0.01
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (7 bp):
ATAATAT
Found at i:70552614 original size:21 final size:21
Alignment explanation
Indices: 70552546--70552789 Score: 108
Period size: 21 Copynumber: 11.6 Consensus size: 21
70552536 TTTAATGATA
*
70552546 ATAATATATAGATAAAAT--GT
1 ATAATATATA-ATAAAATAATT
*
70552566 ATAATAATATGAA-AAAATGACATA
1 ATAAT-ATAT-AATAAAAT-A-ATT
70552590 ATAATATATAATAAAATAATT
1 ATAATATATAATAAAATAATT
*
70552611 ATAATATATAATATAA-AATT
1 ATAATATATAATAAAATAATT
* *
70552631 AT-ATATGTAAAAAAAT-A-T
1 ATAATATATAATAAAATAATT
70552649 ATAATATAT-AT-AAATAATT
1 ATAATATATAATAAAATAATT
*
70552668 AATAAATATATAATACAAGTAA--
1 -AT-AATATATAATA-AAATAATT
*
70552690 A-AATATAATAATAATAT-A-T
1 ATAATAT-ATAATAAAATAATT
*
70552709 A-AATA-ATAATGGAAAATAATA
1 ATAATATATAAT--AAAATAATT
* * *
70552730 ATAATTTGTGA-AAAATAATAT
1 ATAATATATAATAAAATAAT-T
*
70552751 ATAATAAATAATAATATAAATATTAT
1 ATAAT--AT-ATAATA-AAATAAT-T
70552777 ATAATATATAATA
1 ATAATATATAATA
70552790 TAAAAATAAG
Statistics
Matches: 172, Mismatches: 22, Indels: 57
0.69 0.09 0.23
Matches are distributed among these distances:
17 9 0.05
18 6 0.03
19 33 0.19
20 33 0.19
21 36 0.21
22 9 0.05
23 18 0.10
24 14 0.08
25 1 0.01
26 13 0.08
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (21 bp):
ATAATATATAATAAAATAATT
Found at i:70552636 original size:17 final size:16
Alignment explanation
Indices: 70552613--70552784 Score: 51
Period size: 16 Copynumber: 10.8 Consensus size: 16
70552603 AAATAATTAT
70552613 AATATATAATAT-AAA
1 AATATATAATATAAAA
* *
70552628 ATTATAT-ATGTAAAAA
1 AATATATAATAT-AAAA
70552644 AATATATAATAT---A
1 AATATATAATATAAAA
* * *
70552657 TATAAATAAT-TAATA
1 AATATATAATATAAAA
*
70552672 AATATATAATACAAGTAAA
1 AATATATAATA-TA--AAA
*
70552691 AATATAATAATAATATATA
1 AATAT-ATAAT-ATA-AAA
**
70552710 AATA-ATAATGGAAAA
1 AATATATAATATAAAA
* *
70552725 TAATA-ATAATTTGTGAAA
1 -AATATATAA--TATAAAA
*
70552743 AATA-AT-ATATAATA
1 AATATATAATATAAAA
*
70552757 AATA-ATAATATAAAT
1 AATATATAATATAAAA
*
70552772 ATTATATAATATA
1 AATATATAATATA
70552785 TAATATAAAA
Statistics
Matches: 117, Mismatches: 23, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
12 1 0.01
13 9 0.08
14 13 0.11
15 26 0.22
16 27 0.23
17 15 0.13
18 5 0.04
19 14 0.12
20 6 0.05
21 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (16 bp):
AATATATAATATAAAA
Found at i:70552672 original size:11 final size:12
Alignment explanation
Indices: 70552568--70552798 Score: 75
Period size: 11 Copynumber: 19.4 Consensus size: 12
70552558 TAAAATGTAT
*
70552568 AATAATATGAAAA
1 AATAATAT-AATA
* *
70552581 AATGACATAAT-
1 AATAATATAATA
70552592 AAT-ATATAATAA
1 AATAATATAAT-A
70552604 AATAATTATAATA
1 AATAA-TATAATA
*
70552617 TATAATATAA-A
1 AATAATATAATA
*
70552628 ATTATATATGTAA-A
1 A--ATA-ATATAATA
70552642 AA-AATAT-AT-
1 AATAATATAATA
70552651 AATATATATAAATA
1 AATA-ATAT-AATA
*
70552665 ATTAATA-AATA
1 AATAATATAATA
* *
70552676 TATAATACAAGTA
1 AATAATATAA-TA
70552689 AA-AATATAAT-
1 AATAATATAATA
70552699 AATAATAT-ATA
1 AATAATATAATA
*
70552710 AATAATAATGGA-A
1 AATAAT-AT-AATA
*
70552723 AATAATAATAATT
1 AATAAT-ATAATA
**
70552736 TGTGAA-A-AAT-
1 AAT-AATATAATA
70552746 AAT-ATATAATA
1 AATAATATAATA
70552757 AATAATA-ATATA
1 AATAATATA-ATA
70552769 AATATTATATAATA
1 AATA--ATATAATA
*
70552783 TATAATATAA-A
1 AATAATATAATA
70552794 AATAA
1 AATAA
70552799 GGTTAAAAAT
Statistics
Matches: 167, Mismatches: 21, Indels: 62
0.67 0.08 0.25
Matches are distributed among these distances:
8 1 0.01
9 4 0.02
10 18 0.11
11 42 0.25
12 39 0.23
13 34 0.20
14 28 0.17
15 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (12 bp):
AATAATATAATA
Found at i:70552732 original size:19 final size:21
Alignment explanation
Indices: 70552710--70552757 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
70552700 ATAATATATA
70552710 AATAATAATG-G-AAAATAAT
1 AATAATAATGTGAAAAATAAT
*
70552729 AATAAT-TTGTGAAAAATAAT
1 AATAATAATGTGAAAAATAAT
70552749 ATATAATAA
1 A-ATAATAA
70552758 ATAATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 2 0.09
19 7 0.30
20 9 0.39
21 5 0.22
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (21 bp):
AATAATAATGTGAAAAATAAT
Found at i:70552782 original size:26 final size:25
Alignment explanation
Indices: 70552568--70552734 Score: 60
Period size: 24 Copynumber: 7.0 Consensus size: 25
70552558 TAAAATGTAT
* *
70552568 AATAATATGAAAA-AATGACATAAT-
1 AATAATATAAAAATAAT-ATATAATA
70552592 AAT-ATATAATAAAATAAT-TATAATA
1 AATAATAT-A-AAAATAATATATAATA
* * *
70552617 TATAATATAAAATTATATATGTAA-A
1 AATAATATAAAAATA-ATATATAATA
70552642 AA-AATAT----ATAATATAT-ATA
1 AATAATATAAAAATAATATATAATA
*
70552661 AATAAT-TAATAAATATATAATACAAGTA
1 AATAATATAA-AAATA-AT-ATATAA-TA
*
70552689 AA-AATATAATAATAATATATAA-A
1 AATAATATAAAAATAATATATAATA
**
70552712 TAATAAT-GGAAAATAATA-ATAAT
1 -AATAATATAAAAATAATATATAAT
70552735 TTGTGAAAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 44
0.65 0.08 0.27
Matches are distributed among these distances:
18 1 0.01
19 9 0.08
20 5 0.05
23 9 0.08
24 31 0.29
25 21 0.20
26 16 0.15
27 8 0.07
28 7 0.07
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (25 bp):
AATAATATAAAAATAATATATAATA
Found at i:70552792 original size:28 final size:28
Alignment explanation
Indices: 70552587--70552716 Score: 76
Period size: 30 Copynumber: 4.6 Consensus size: 28
70552577 AAAAAATGAC
*
70552587 ATAATA-AT-ATATAATA-AAATAAT-T
1 ATAATATATAATATAATATAAATATTAT
* * *
70552611 ATAATATATAATATAAAATTATATATGTAAA
1 ATAATATATAATATAATA-TAAATAT-T-AT
*
70552642 AAAATATATAATAT-ATATAAATAATTA-
1 ATAATATATAATATAATATAAAT-ATTAT
* * *
70552669 ATAAATATATAATACAAGTAAAAATATAAT
1 AT-AATATATAATATAA-TATAAATATTAT
70552699 AATAATATATAA-ATAATA
1 -ATAATATATAATATAATA
70552717 ATGGAAAATA
Statistics
Matches: 81, Mismatches: 12, Indels: 22
0.70 0.10 0.19
Matches are distributed among these distances:
24 6 0.07
25 2 0.02
26 7 0.09
27 1 0.01
28 18 0.22
29 13 0.16
30 19 0.23
31 15 0.19
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (28 bp):
ATAATATATAATATAATATAAATATTAT
Found at i:70555758 original size:9 final size:9
Alignment explanation
Indices: 70555744--70555768 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
70555734 ATCATAGTTG
70555744 AACTCTCTA
1 AACTCTCTA
70555753 AACTCTCTA
1 AACTCTCTA
70555762 AACTCTC
1 AACTCTC
70555769 CTTAGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTCTCTA
Found at i:70556454 original size:48 final size:48
Alignment explanation
Indices: 70556383--70556479 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
70556373 TATAAGTCAG
70556383 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
1 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
70556431 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
1 TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
70556479 T
1 T
70556480 CAAACCATAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (48 bp):
TTAATTGACTTATTGACCCTATTCTCATACCGTTAATTTATATTTTGT
Found at i:70568992 original size:18 final size:18
Alignment explanation
Indices: 70568952--70568993 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
70568942 TCTCCTACAC
70568952 TTTTTTATTTTTCAATTT
1 TTTTTTATTTTTCAATTT
*
70568970 ATTTTTATTTTTC-ATTCT
1 TTTTTTATTTTTCAATT-T
70568988 TTTTTT
1 TTTTTT
70568994 CACTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTATTTTTCAATTT
Found at i:70568993 original size:30 final size:32
Alignment explanation
Indices: 70568959--70569031 Score: 105
Period size: 30 Copynumber: 2.3 Consensus size: 32
70568949 CACTTTTTTA
70568959 TTTTTCAATTTATTTTTATTTTTC-AT-TCTT
1 TTTTTCAATTTATTTTTATTTTTCAATCTCTT
* * *
70568989 TTTTTCACTTTCTTTTTCTTTTTCAATCTCTT
1 TTTTTCAATTTATTTTTATTTTTCAATCTCTT
70569021 TTTTTCAATTT
1 TTTTTCAATTT
70569032 CGTAATCTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 21 0.57
31 2 0.05
32 14 0.38
ACGTcount: A:0.14, C:0.15, G:0.00, T:0.71
Consensus pattern (32 bp):
TTTTTCAATTTATTTTTATTTTTCAATCTCTT
Found at i:70569020 original size:18 final size:18
Alignment explanation
Indices: 70568989--70569023 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70568979 TTTCATTCTT
* *
70568989 TTTTTCACTTTCTTTTTC
1 TTTTTCAATCTCTTTTTC
70569007 TTTTTCAATCTCTTTTT
1 TTTTTCAATCTCTTTTT
70569024 TTCAATTTCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTCAATCTCTTTTTC
Found at i:70571724 original size:24 final size:22
Alignment explanation
Indices: 70571684--70571738 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
70571674 TGGACACAAA
* *
70571684 AAAAAGCATGATAACAATATCACT
1 AAAAA-CATGAAAACAAAAT-ACT
*
70571708 AAAAACATGAAATACAAAATATT
1 AAAAACATGAAA-ACAAAATACT
70571731 AAAAACAT
1 AAAAACAT
70571739 ACATTAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.59
24 11 0.41
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAAACATGAAAACAAAATACT
Found at i:70579554 original size:25 final size:26
Alignment explanation
Indices: 70579526--70579605 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 26
70579516 ATGCTCTCGC
70579526 GAGCTGTA-AATCGGTAAGCTCATAT
1 GAGCTGTACAATCGGTAAGCTCATAT
*
70579551 GAGCTG-AGAATCGGTAAGCTC-TCAT
1 GAGCTGTACAATCGGTAAGCTCAT-AT
* * *
70579576 GA--TCTACAATCGATAAGCTCATAC
1 GAGCTGTACAATCGGTAAGCTCATAT
70579600 GAGCTG
1 GAGCTG
70579606 ATAATAGGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
23 1 0.02
24 18 0.41
25 24 0.55
26 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
GAGCTGTACAATCGGTAAGCTCATAT
Found at i:70597871 original size:20 final size:19
Alignment explanation
Indices: 70597846--70597891 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70597836 TGATTTTGAC
70597846 TAATTTTAGAAATTTTCATT
1 TAATTTTA-AAATTTTCATT
** *
70597866 TAATTTTAAGTTTTTCTTT
1 TAATTTTAAAATTTTCATT
70597885 TAATTTT
1 TAATTTT
70597892 GACTTAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.63
Consensus pattern (19 bp):
TAATTTTAAAATTTTCATT
Found at i:70612462 original size:40 final size:40
Alignment explanation
Indices: 70612425--70612518 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
70612415 GCTACTCGTT
*
70612425 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
70612465 CAAATGCCTTCGGGACTTAACCCGGATTTCGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
70612505 CCAATGCCTTCGGG
1 CAAATGCCTTCGGG
70612519 TTAGTATCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:70612581 original size:67 final size:67
Alignment explanation
Indices: 70612453--70612585 Score: 162
Period size: 67 Copynumber: 2.0 Consensus size: 67
70612443 AGCCCGGTTA
* * *
70612453 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTCGTAACTCGCACCAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATCGTAACTAGCACCAAAGCCTTCGG
70612518 GT
66 GT
* ** * *
70612520 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATCGTAAC-TAGCACCAAAGCCTTC
70612583 GGG
64 GGG
70612586 ACTTAGCCCG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
66 3 0.05
67 49 0.88
68 4 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (67 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATCGTAACTAGCACCAAAGCCTTCGG
GT
Found at i:70616993 original size:40 final size:37
Alignment explanation
Indices: 70616927--70617061 Score: 152
Period size: 35 Copynumber: 3.7 Consensus size: 37
70616917 CATGGCGAAG
70616927 TGTGAAATGTAGGTATGGTA--TCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
70616962 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACTGAGT
** ** * *
70617002 TAAGAAATGTAGGTATGCCATTTC--CTATACCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
*
70617037 TGTAAAATGTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
70617062 ATCATGAAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
35 48 0.58
38 2 0.02
39 2 0.02
40 31 0.37
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
Found at i:70625550 original size:40 final size:40
Alignment explanation
Indices: 70625495--70625716 Score: 342
Period size: 40 Copynumber: 5.5 Consensus size: 40
70625485 GATGATAACG
70625495 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
70625535 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
70625575 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
70625615 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
70625655 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
70625695 GGGCTAAGTCCCGAAGGCATTT
1 GGGCTAAGTCCCGAAGGCATTT
70625717 AAGCGAGTAG
Statistics
Matches: 172, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
39 2 0.01
40 168 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:70627237 original size:40 final size:37
Alignment explanation
Indices: 70627171--70627305 Score: 163
Period size: 35 Copynumber: 3.7 Consensus size: 37
70627161 CATGGCAAAG
70627171 TGTGAAATGTAGGTATGGTA--TCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
70627206 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACTGAGT
** *
70627246 TAAGAAATGTAGGTATGGGATTTC--CCATA-TCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACT-GAGT
*
70627281 TGTAAAATGTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
70627306 ATGAGGAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
34 1 0.01
35 49 0.57
38 2 0.02
39 2 0.02
40 32 0.37
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
Found at i:70633750 original size:19 final size:19
Alignment explanation
Indices: 70633705--70633759 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
70633695 TTTTTTATTT
* *
70633705 TTTATTTTTTGAACTTATA
1 TTTATTTTTTGAATTTTTA
* * *
70633724 TGTGTTTTTTAAATTTTTA
1 TTTATTTTTTGAATTTTTA
70633743 TTTATTTTTTGAATTTT
1 TTTATTTTTTGAATTTT
70633760 CAGAAATTCT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.69
Consensus pattern (19 bp):
TTTATTTTTTGAATTTTTA
Found at i:70634492 original size:33 final size:34
Alignment explanation
Indices: 70634428--70634492 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
70634418 CTGCACGAAG
**
70634428 AAAAGGAAAGAAAGAAAGTGTTTTTTTAAAAACA
1 AAAAGGAAAGAAAGAAAGTGTTTTTAAAAAAACA
* *
70634462 AAAAGG-AAGAATGAAATTGTTTTTAAAAAAA
1 AAAAGGAAAGAAAGAAAGTGTTTTTAAAAAAA
70634493 TTAGTTTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.57, C:0.02, G:0.17, T:0.25
Consensus pattern (34 bp):
AAAAGGAAAGAAAGAAAGTGTTTTTAAAAAAACA
Found at i:70639805 original size:23 final size:23
Alignment explanation
Indices: 70639779--70639846 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
70639769 TAATTTAACT
70639779 AAAGCTAATCTCACTGCTCATTC
1 AAAGCTAATCTCACTGCTCATTC
* ** * *
70639802 AAAGGTAA---C-CTTTTAACT-
1 AAAGCTAATCTCACTGCTCATTC
70639820 AAAGCTAATCTCACTGCTCATTC
1 AAAGCTAATCTCACTGCTCATTC
70639843 AAAG
1 AAAG
70639847 GTAACCTTAA
Statistics
Matches: 30, Mismatches: 10, Indels: 10
0.60 0.20 0.20
Matches are distributed among these distances:
18 7 0.23
19 5 0.17
20 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.29
Consensus pattern (23 bp):
AAAGCTAATCTCACTGCTCATTC
Found at i:70639829 original size:41 final size:41
Alignment explanation
Indices: 70639772--70639854 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
70639762 CTATTTTTAA
70639772 TTTAACTAAAGCTAATCTCACTGCTCATTCAAAGGTAACCT
1 TTTAACTAAAGCTAATCTCACTGCTCATTCAAAGGTAACCT
70639813 TTTAACTAAAGCTAATCTCACTGCTCATTCAAAGGTAACCT
1 TTTAACTAAAGCTAATCTCACTGCTCATTCAAAGGTAACCT
70639854 T
1 T
70639855 AATTATACAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.33
Consensus pattern (41 bp):
TTTAACTAAAGCTAATCTCACTGCTCATTCAAAGGTAACCT
Found at i:70640298 original size:31 final size:32
Alignment explanation
Indices: 70640258--70640329 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 32
70640248 TTAAACTAAC
*
70640258 ATTTA-ATATATAAAATTACACA-AAATCAAA
1 ATTTATATATATAAAATTACACATAAATAAAA
*
70640288 A-TT-TATATATAATATTACACATTAAATAAAA
1 ATTTATATATATAAAATTACACA-TAAATAAAA
*
70640319 ATTTATTTATA
1 ATTTATATATA
70640330 GTTTTAAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
29 18 0.53
30 1 0.03
31 8 0.24
32 2 0.06
33 5 0.15
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (32 bp):
ATTTATATATATAAAATTACACATAAATAAAA
Found at i:70640304 original size:29 final size:30
Alignment explanation
Indices: 70640258--70640329 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
70640248 TTAAACTAAC
*
70640258 ATTTAATATATAAAATTACACA-AAATCAAA
1 ATTT-ATATATAAAATTACACATAAATAAAA
*
70640288 ATTTATATATAATATTACACATTAAATAAAA
1 ATTTATATATAAAATTACACA-TAAATAAAA
*
70640319 ATTTATTTATA
1 ATTTATATATA
70640330 GTTTTAAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.43
30 4 0.11
31 17 0.46
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (30 bp):
ATTTATATATAAAATTACACATAAATAAAA
Found at i:70640660 original size:4 final size:4
Alignment explanation
Indices: 70640651--70640679 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
70640641 GCCACCTCCT
70640651 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
70640680 AAAAGTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:70643651 original size:30 final size:30
Alignment explanation
Indices: 70643615--70643675 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
70643605 ACGATGGATG
70643615 ATAGCTTCCTTTTGCCACTACATGCCTTGA
1 ATAGCTTCCTTTTGCCACTACATGCCTTGA
*
70643645 ATAGCTTCCTTTTGCCACTGCATGCCTTGA
1 ATAGCTTCCTTTTGCCACTACATGCCTTGA
70643675 A
1 A
70643676 GGTTGGGTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.36
Consensus pattern (30 bp):
ATAGCTTCCTTTTGCCACTACATGCCTTGA
Found at i:70645888 original size:58 final size:58
Alignment explanation
Indices: 70645789--70645966 Score: 216
Period size: 58 Copynumber: 3.1 Consensus size: 58
70645779 AGCCGTCTAA
* * *
70645789 TACTTAGAGATTTTTCTCGAAATTATAAGCTAGGAACATGAATTCGCGATCTGTTTTC
1 TACTTAGTGATTTTTCTCAAAATTATAAGCTAGGAATATGAATTCGCGATCTGTTTTC
* * * *
70645847 TATTTAGTGATTTTTCTCAAAATTATAAGCT-GAGAATATGAATTCGCGTTCTATTTTT
1 TACTTAGTGATTTTTCTCAAAATTATAAGCTAG-GAATATGAATTCGCGATCTGTTTTC
* * * * *
70645905 TACATAGAT-ATTTTTCTCAAAATTATAAGCTAGGAATATCAATTCTCGGTCTGTTTTA
1 TACTTAG-TGATTTTTCTCAAAATTATAAGCTAGGAATATGAATTCGCGATCTGTTTTC
70645963 TACT
1 TACT
70645967 GATATTACAG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
57 1 0.01
58 99 0.97
59 2 0.02
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.42
Consensus pattern (58 bp):
TACTTAGTGATTTTTCTCAAAATTATAAGCTAGGAATATGAATTCGCGATCTGTTTTC
Found at i:70655801 original size:42 final size:42
Alignment explanation
Indices: 70655599--70655803 Score: 223
Period size: 42 Copynumber: 4.9 Consensus size: 42
70655589 TACCGTACCA
* * * *
70655599 ATGCCATAT-CCAGATATGATCTTACATGAAATCCCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
70655640 ATGCCAGTAGCCCAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGCCA-TATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * ** *
70655683 ATACTATATCCCAGATATGGTCTTACAATAAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * *
70655725 ATGACATATCCCAGATATAGTTTTACACAAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
70655767 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
70655804 GTAACCCTAA
Statistics
Matches: 133, Mismatches: 29, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
41 6 0.05
42 98 0.74
43 29 0.22
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:70659867 original size:20 final size:20
Alignment explanation
Indices: 70659842--70659879 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70659832 GTAACATATA
70659842 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
70659862 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
70659880 TAGTTCCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:70663560 original size:20 final size:20
Alignment explanation
Indices: 70663535--70663578 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
70663525 AACACAACAA
70663535 CAAACTTGTCCAAATATGGC
1 CAAACTTGTCCAAATATGGC
70663555 CAAACTTGTCCAAATATGGC
1 CAAACTTGTCCAAATATGGC
70663575 CAAA
1 CAAA
70663579 TTATTCGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.23
Consensus pattern (20 bp):
CAAACTTGTCCAAATATGGC
Found at i:70672147 original size:241 final size:241
Alignment explanation
Indices: 70671699--70672180 Score: 569
Period size: 241 Copynumber: 2.0 Consensus size: 241
70671689 TTAGGACCTT
* * ** ***
70671699 CTAATTCATAATCTAATGCAATTTCATGCTTAAAGCTTCTAGAATGCAAGTTTTGTGCTTTATTC
1 CTAATTAATAATCCAATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTTCAACTTTATTC
* ** * * * * *
70671764 AATTTGGTCCCTAAAATGTAATTATATATTTTATGCATAGAATTTCTTCATGAAACTTTCACACA
66 AATTTAGTCCCTAAAATCAAATTAGACACTTTAGGCATAGAATTTCTTCATGAAAATTTCACACA
* * * * *
70671829 AGCACGCATTCATAACATAAACCTCATAATAATCATAAAATAATTATTTCTATCTTTAATTTTTG
131 AACACGCATTCATAACATAAACCTCATAATAATCATAAAATAACTATTTCTATCTTCAATTTGTA
** *** * * *
70671894 GTCTTGAAACCACTGTTTTGACTAGGCCCTAATTCGGGATGTTACA
196 GTCTCAAAACCACTGTTCCAACTAGACCATAATTCGGAATGTTACA
* *
70671940 CTAATTAATTATCCAATGCAATTTCATGCTTGAAGCTTCTAGAACACAAGTTTTACAAC-TTATT
1 CTAATTAATAATCCAATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTT-CAACTTTATT
* *
70672004 CAATTTAGTCCCTAAAGTCAAATTGGACACTTTAGGCATAGAATTT-TTGCATGAAAATTTCACA
65 CAATTTAGTCCCTAAAATCAAATTAGACACTTTAGGCATAGAATTTCTT-CATGAAAATTTCACA
* * *
70672068 CAAACATGCAATT-ATATCATAGACCATCA-AATAATCATAAAATAACTATTTCTAT-TTCAGAT
129 CAAACACGC-ATTCATAACATAAACC-TCATAATAATCATAAAATAACTATTTCTATCTTCA-AT
70672130 TTGTAGTCTCAAAACCACTGTTCCAACTAGACCATAATTCGGAATGTTACA
191 TTGTAGTCTCAAAACCACTGTTCCAACTAGACCATAATTCGGAATGTTACA
70672181 ACTTTCCCCC
Statistics
Matches: 201, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
240 5 0.02
241 189 0.94
242 7 0.03
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (241 bp):
CTAATTAATAATCCAATGCAATTTCATGCTTAAAGCTTCTAGAACACAAGTTTTCAACTTTATTC
AATTTAGTCCCTAAAATCAAATTAGACACTTTAGGCATAGAATTTCTTCATGAAAATTTCACACA
AACACGCATTCATAACATAAACCTCATAATAATCATAAAATAACTATTTCTATCTTCAATTTGTA
GTCTCAAAACCACTGTTCCAACTAGACCATAATTCGGAATGTTACA
Found at i:70682127 original size:19 final size:19
Alignment explanation
Indices: 70682103--70682139 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70682093 GAAAATGTGT
70682103 AAGTTATGCCTATAAATTG
1 AAGTTATGCCTATAAATTG
* *
70682122 AAGTTATTCCTATGAATT
1 AAGTTATGCCTATAAATT
70682140 TATGATGACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AAGTTATGCCTATAAATTG
Found at i:70684049 original size:23 final size:23
Alignment explanation
Indices: 70684023--70684067 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
70684013 ATTATATACT
**
70684023 ATATATATTTTTTATTTTTAATC
1 ATATATACATTTTATTTTTAATC
*
70684046 ATATTTACATTTTATTTTTAAT
1 ATATATACATTTTATTTTTAAT
70684068 TTTAATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATATACATTTTATTTTTAATC
Found at i:70685062 original size:24 final size:25
Alignment explanation
Indices: 70684984--70685088 Score: 99
Period size: 24 Copynumber: 4.2 Consensus size: 25
70684974 AGCTCCTCTT
*
70684984 GAGCTGATAGACAGTAAGCT-TTGAC
1 GAGCTGATAGATAGTAAGCTCTT-AC
* * *
70685009 GAGCT-AAAAATAGTAATCTCTTAC
1 GAGCTGATAGATAGTAAGCTCTTAC
70685033 GAGCTGATA-ATAGTAAGCTCTTAC
1 GAGCTGATAGATAGTAAGCTCTTAC
* * *
70685057 GAGCTGATATATCGATAAGCTCATAC
1 GAGCTGATAGATAG-TAAGCTCTTAC
*
70685083 AAGCTG
1 GAGCTG
70685089 TGGTGATTCC
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
24 40 0.60
25 12 0.18
26 15 0.22
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (25 bp):
GAGCTGATAGATAGTAAGCTCTTAC
Found at i:70686913 original size:13 final size:13
Alignment explanation
Indices: 70686895--70686922 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70686885 CGCCCATGTA
70686895 CTTAGGCCGTGTG
1 CTTAGGCCGTGTG
70686908 CTTAGGCCGTGTG
1 CTTAGGCCGTGTG
70686921 CT
1 CT
70686923 CGATATTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.25, G:0.36, T:0.32
Consensus pattern (13 bp):
CTTAGGCCGTGTG
Found at i:70689201 original size:28 final size:29
Alignment explanation
Indices: 70689147--70689213 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
70689137 GAAAGCATGT
*
70689147 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCATAATGGGCC
*
70689176 ATATGAATGA-GA-TTGGGCATAGTGGGCC
1 ATATGAAT-ATGATTTGGGCATAATGGGCC
*
70689204 ATATGCATAT
1 ATATGAATAT
70689214 ATGTAGACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
27 1 0.03
28 21 0.64
29 10 0.30
30 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCATAATGGGCC
Found at i:70693387 original size:29 final size:29
Alignment explanation
Indices: 70693354--70693444 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
70693344 TAGGACGAAA
70693354 TTTCAAGGGTTCTCCATAGCTAGGGTTTG
1 TTTCAAGGGTTCTCCATAGCTAGGGTTTG
* * * ***
70693383 TTTCAA-GCTTTTTCAT---TAGGACG-CAA
1 TTTCAAGGGTTCTCCATAGCTAGG--GTTTG
70693409 TTTCAAGGGTTCTCCATAGCTAGGGTTTG
1 TTTCAAGGGTTCTCCATAGCTAGGGTTTG
70693438 TTTCAAG
1 TTTCAAG
70693445 CTTTCAAACT
Statistics
Matches: 43, Mismatches: 12, Indels: 14
0.62 0.17 0.20
Matches are distributed among these distances:
25 4 0.09
26 6 0.14
27 8 0.19
28 8 0.19
29 13 0.30
30 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (29 bp):
TTTCAAGGGTTCTCCATAGCTAGGGTTTG
Found at i:70693411 original size:55 final size:55
Alignment explanation
Indices: 70693339--70693448 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
70693329 GTCCATCTTC
70693339 TTCATTAGGACGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
1 TTCATTAGGACGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
*
70693394 TTCATTAGGACGCAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
1 TTCATTAGGACGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
70693449 CAAACTCCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (55 bp):
TTCATTAGGACGAAATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTT
Found at i:70694274 original size:55 final size:54
Alignment explanation
Indices: 70694207--70694461 Score: 278
Period size: 55 Copynumber: 4.8 Consensus size: 54
70694197 ATTATGGTTT
*
70694207 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
70694262 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
70694317 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
70694370 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
70694419 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
70694462 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:70694413 original size:108 final size:110
Alignment explanation
Indices: 70694214--70694463 Score: 322
Period size: 108 Copynumber: 2.4 Consensus size: 110
70694204 TTTAAGGATA
*
70694214 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
70694279 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* **
70694324 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* * * *
70694386 ACCATGTCAAGACATGGCAATGGTAAGTTTC-AAAAGG---A--TA
65 ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
70694426 CCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
70694464 ACCCGTGTAT
Statistics
Matches: 124, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
102 31 0.25
103 2 0.02
104 1 0.01
107 8 0.06
108 48 0.39
109 7 0.06
110 27 0.22
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:70694674 original size:16 final size:16
Alignment explanation
Indices: 70694653--70694683 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70694643 ATAAATTTGA
70694653 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
70694669 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
70694684 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:70696531 original size:30 final size:29
Alignment explanation
Indices: 70696470--70696565 Score: 124
Period size: 28 Copynumber: 3.3 Consensus size: 29
70696460 GAAAGTATGT
*
70696470 ATATGAATGTGATTTGGGCCTAAT-AGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
70696498 ATATGAATGTGATTTGGGGCCTAATGGGCC
1 ATATGAATGTGATTT-GGGCCTAATGGGCC
* * *
70696528 ATATAAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
70696556 ATATGCATGT
1 ATATGAATGT
70696566 ATGTAGACTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
28 35 0.59
29 11 0.19
30 13 0.22
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:70698694 original size:40 final size:40
Alignment explanation
Indices: 70698648--70698831 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
70698638 CTCGCACAAG
* *
70698648 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
70698688 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
70698728 GCCTTCGAGTCTTAGCCCGGATATAG-CAACTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
** * *
70698768 GCCTTCGAATCTTAGTCCGGATATAGTCACTAGCATAAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-CAAAT
*
70698809 -CCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
70698832 CATTCGAATA
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 119 0.95
41 5 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:70707749 original size:40 final size:40
Alignment explanation
Indices: 70707683--70707858 Score: 182
Period size: 40 Copynumber: 4.5 Consensus size: 40
70707673 TGACTAATTT
* *
70707683 CAGGCTAA-GCCCGAAGGCAATT-GTGCGAGTTATTATACC
1 CAGGCTAATTCCCGAAGGC-ATTCGTGCGAGTTATTATATC
*
70707722 CAGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGTC
1 CAGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATATC
* * * *
70707762 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CAGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATATC
* * *
70707802 CGGGCT-ATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CAGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATATC
* *
70707842 C-GGTTAAATCCCGAAGG
1 CAGGCTAATTCCCGAAGG
70707859 TACTTGGCTT
Statistics
Matches: 119, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 26 0.22
40 93 0.78
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CAGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATATC
Found at i:70707808 original size:80 final size:79
Alignment explanation
Indices: 70707685--70707832 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 79
70707675 ACTAATTTCA
* *
70707685 GGCTAAGCCCGAAGGCAATTGTGCGAGTTATTATACCCAGGCTAAT-TCCCGAAGGCATTCGTGC
1 GGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATACCCAGGCT-ATGTCCCGAAGGCATTCGAGC
70707749 GAGTTATTATGTCCG
65 GAGTTATTATGTCCG
* *
70707764 GGCTAAGTCCCGAAGGC-ATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAG
1 GGCTAAG-CCCGAAGGCAATT-GTGCGAGTTACTATACCCAGGCTATGTCCCGAAGGCATTCGAG
70707828 CGAGT
64 CGAGT
70707833 AGCTATATCC
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
79 12 0.19
80 50 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (79 bp):
GGCTAAGCCCGAAGGCAATTGTGCGAGTTACTATACCCAGGCTATGTCCCGAAGGCATTCGAGCG
AGTTATTATGTCCG
Found at i:70707844 original size:80 final size:79
Alignment explanation
Indices: 70707685--70707858 Score: 212
Period size: 80 Copynumber: 2.2 Consensus size: 79
70707675 ACTAATTTCA
* *
70707685 GGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATACCCAGGCTAATTCCCGAAGGCATTCGTGC
1 GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATACCCAGGCTAATTCCCGAAGGCATTCGAGC
* *
70707749 GAGTTATTATGTCC
66 GAGTTACTATATCC
* *
70707763 GGGCTAAGTCCCGAAGGC-ATTGGTGCGAGTTACTATATCCGGGCT-ATGTCCCGAAGGCATTCG
1 -GGCTAAGTCCCGAAGGCAATT-GTGCGAGTTACTATACCCAGGCTAAT-TCCCGAAGGCATTCG
70707826 AGCGAG-TAGCTATATCC
63 AGCGAGTTA-CTATATCC
* *
70707843 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
70707859 TACTTGGCTT
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
79 28 0.34
80 55 0.66
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATACCCAGGCTAATTCCCGAAGGCATTCGAGC
GAGTTACTATATCC
Found at i:70730172 original size:46 final size:47
Alignment explanation
Indices: 70730041--70730205 Score: 171
Period size: 46 Copynumber: 3.5 Consensus size: 47
70730031 GTGTCGATGC
* * *
70730041 CATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGT-GCCGATAC
1 CATGTCCCAGACATGGTCTTACACTGGC-TT-ACAT-CTCGTAGCCGA-AG
* *
70730091 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGCCGAGG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCGAAG
*
70730136 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCCGAAG
* *
70730182 CATGTCCCAAACAT-GTCTTGCACT
1 CATGTCCCAGACATGGTCTTACACT
70730206 AGCTCTCATT
Statistics
Matches: 102, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
44 12 0.12
45 19 0.19
46 45 0.44
50 26 0.25
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCCGAAG
Found at i:70738720 original size:43 final size:43
Alignment explanation
Indices: 70738619--70738742 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
70738609 GGTTACCGAG
* * *
70738619 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGAACAGTGGCATCGAT
* * * * * *
70738662 ATATGATTTCGTGTAAGACCCTGTCTGGAACAGTGGCTTTGAT
1 ATGTGATTACATGTAAGACCATGTCTGGAACAGTGGCATCGAT
* * *
70738705 ATGTGATAACATGTAAGACCATATCTGGAATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGAACAGTGGCAT
70738743 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 17, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 5 0.08
43 59 0.92
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGAACAGTGGCATCGAT
Found at i:70740963 original size:43 final size:44
Alignment explanation
Indices: 70740878--70740963 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
70740868 TGTGTCATAC
* *
70740878 ATATCACGAACTCAAACACAACTCTATGAGTTCGGATGTCACAT
1 ATATCACGAACTCAAACACAACTCAATGAGTTCAGATGTCACAT
* * *
70740922 ATATCATGAACTCAGAC-CAACTCAATGAGTTCAGATTTCACA
1 ATATCACGAACTCAAACACAACTCAATGAGTTCAGATGTCACA
70740964 ACTCCTAGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 22 0.59
44 15 0.41
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (44 bp):
ATATCACGAACTCAAACACAACTCAATGAGTTCAGATGTCACAT
Found at i:70741853 original size:33 final size:33
Alignment explanation
Indices: 70741798--70741871 Score: 123
Period size: 33 Copynumber: 2.2 Consensus size: 33
70741788 TACAATCAAG
*
70741798 CTTGAAAAGTTGAAAAACCCTAGCTATGGAACC
1 CTTGTAAAGTTGAAAAACCCTAGCTATGGAACC
70741831 CTTTGTAAAGTTG-AAAACCCTAGCTATGGAACC
1 C-TTGTAAAGTTGAAAAACCCTAGCTATGGAACC
70741864 CTTGTAAA
1 CTTGTAAA
70741872 ATTCGGCTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
32 7 0.18
33 22 0.56
34 10 0.26
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (33 bp):
CTTGTAAAGTTGAAAAACCCTAGCTATGGAACC
Found at i:70747277 original size:18 final size:18
Alignment explanation
Indices: 70747236--70747286 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
70747226 CTTGTTTATA
*
70747236 AATT-ATTTTTATCATAGT
1 AATTAATTTTT-TTATAGT
70747254 AA-TAATTTTTTTATAGT
1 AATTAATTTTTTTATAGT
*
70747271 AATTAATATTTTTATA
1 AATTAATTTTTTTATA
70747287 AAATATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (18 bp):
AATTAATTTTTTTATAGT
Found at i:70748284 original size:31 final size:31
Alignment explanation
Indices: 70748249--70748310 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
70748239 ATAAGTTAAA
70748249 GTCATTATATTGAGAGAAAATTCACTCCATT
1 GTCATTATATTGAGAGAAAATTCACTCCATT
70748280 GTCATTATATTGAGAGAAAATTCACTCCATT
1 GTCATTATATTGAGAGAAAATTCACTCCATT
70748311 ATATGTTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (31 bp):
GTCATTATATTGAGAGAAAATTCACTCCATT
Found at i:70750521 original size:6 final size:6
Alignment explanation
Indices: 70750510--70750537 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
70750500 AGCGTCTTGA
70750510 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
70750538 TTAACAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:70755387 original size:42 final size:42
Alignment explanation
Indices: 70755295--70755456 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 42
70755285 AATGCTAACA
* *
70755295 TCCCACACGTGGTCTTACATGTAATCACATATCGATGCCATAG
1 TCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAT-G
*
70755338 TCCCAGACGTGGTCTTACACG-AATTTACATAT-GATGCCGATG
1 TCCCAGACGTGGTCTTACACGTAA-TCACATATCGATGCC-ATG
* * * *
70755380 TCCCAGACATGGTCTTACACGTAAATCACAAATCGATACTAATG
1 TCCCAGACGTGGTCTTACACGT-AATCACATATCGATGC-CATG
* * **
70755424 TCCCAAACGTGGTCTTACTCAAAATCACATATC
1 TCCCAGACGTGGTCTTACACGTAATCACATATC
70755457 AGAATCCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
42 29 0.29
43 44 0.44
44 26 0.26
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCATG
Found at i:70755454 original size:86 final size:85
Alignment explanation
Indices: 70755295--70755455 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 85
70755285 AATGCTAACA
* * * * * * *
70755295 TCCCACACGTGGTCTTACATGTAATCACATATCGATGCCATAGTCCCAGACGTGGTCTTACACGA
1 TCCCACACATGGTCTTACACGTAATCACAAATCGATACAATAGTCCCAAACGTGGTCTTACACAA
* *
70755360 ATTTACATATGATGCCGATG
66 AATCACATATGATGCCGATG
* *
70755380 TCCCAGACATGGTCTTACACGTAAATCACAAATCGATACTAAT-GTCCCAAACGTGGTCTTACTC
1 TCCCACACATGGTCTTACACGT-AATCACAAATCGATAC-AATAGTCCCAAACGTGGTCTTACAC
70755444 AAAATCACATAT
64 AAAATCACATAT
70755456 CAGAATCCTA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 19 0.30
86 42 0.67
87 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (85 bp):
TCCCACACATGGTCTTACACGTAATCACAAATCGATACAATAGTCCCAAACGTGGTCTTACACAA
AATCACATATGATGCCGATG
Found at i:70760692 original size:23 final size:23
Alignment explanation
Indices: 70760662--70760708 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
70760652 GTATAGCTTC
70760662 AGTCGAAACTCATTCCTAGGCAT
1 AGTCGAAACTCATTCCTAGGCAT
70760685 AGTCGAAACTCATTCCTAGGCAT
1 AGTCGAAACTCATTCCTAGGCAT
70760708 A
1 A
70760709 TCTGCTGAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (23 bp):
AGTCGAAACTCATTCCTAGGCAT
Found at i:70766305 original size:42 final size:42
Alignment explanation
Indices: 70766259--70766383 Score: 137
Period size: 42 Copynumber: 2.9 Consensus size: 42
70766249 TCATAGATGT
70766259 GGTCTTACATGAATCACATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACATGAATCACATATCGATGCCAAC-GTCCCAGACAG
* * * *
70766301 GGTCTTACATGAA-CTCATATACGATGCCGACGTCCTAGACAT
1 GGTCTTACATGAATCACATAT-CGATGCCAACGTCCCAGACAG
* * *
70766343 CGTCTTACACGTAAATCACAAATCGATGCCAACGTCCCAGA
1 GGTCTTACA--TGAATCACATATCGATGCCAACGTCCCAGA
70766384 TGTGGCCTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
41 6 0.09
42 37 0.54
43 2 0.03
44 19 0.28
45 5 0.07
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
GGTCTTACATGAATCACATATCGATGCCAACGTCCCAGACAG
Found at i:70769498 original size:139 final size:140
Alignment explanation
Indices: 70769170--70769851 Score: 904
Period size: 140 Copynumber: 4.9 Consensus size: 140
70769160 ACACTATGCT
* ** * *
70769170 GACACTTTCCTAATTGTTGGGATAGACTTGTTGACATACGCGTTGGCTAACTCTTTGTATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGG
* * *
70769235 TTGGGATATGCATG-CTGAAGGCAACACTTAAATAAGGGTCAACTTTGTCCAACACTATACCAAC
66 TTGGGATATGCATGCCT-AAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCAAC
70769299 ACTTTTGGGCC
130 ACTTTTGGGCC
*
70769310 GACACTTTCCTAAGTGTTAGGG-TAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATCAGG
1 GACACTTTCCTAAGTGTT-GGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGG
* * * * *
70769374 GTTGGGATATGCATGCCTAAGGGAACGCTTAAATAAGAGTCGGCTTTATCCAACA-TATGCTAAC
65 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCAAC
70769438 ACTTTTGGGCC
130 ACTTTTGGGCC
* * * * * *
70769449 AACACTTTCATAAATGTTAGGATAGACTTGCCGACATACTCTTTAGCCAACTCTTTGTATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGG
* * * ** * * *
70769514 TTGGGATAT-CATACTTAAGGTAACGTTTAAATAAGAGTCAACTTTGTCCAACATTATGCCGACA
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCAACA
* *
70769578 CCTTTGGGTC
131 CTTTTGGGCC
* ** *
70769588 GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATTCTTTGGCCAACTCTTTGCATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGG
* * *
70769653 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTGCAACACTATGCCAACA
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCAACA
*
70769718 CTTTTGGGCT
131 CTTTTGGGCC
* * * *
70769728 GACACTTTCCTACGTGTTGGGATAGACTTGCTGACATACGATTTGGCCAACTCTTTGCATAAGGG
1 GACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGG
* * * *
70769793 TTGAGATATGCACGCCTAATGCAACAATTAAATAAGAGTCGACTTTGTCCAACACTATG
66 TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATG
70769852 TCGACTTTTG
Statistics
Matches: 470, Mismatches: 67, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
138 39 0.08
139 164 0.35
140 262 0.56
141 5 0.01
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (140 bp):
GACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGG
TTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGACTTTGTCCAACACTATGCCAACA
CTTTTGGGCC
Found at i:70769635 original size:278 final size:277
Alignment explanation
Indices: 70769029--70769856 Score: 1108
Period size: 278 Copynumber: 3.0 Consensus size: 277
70769019 AGTCCTAAGA
*
70769029 CGACACTTTTGGGCCGACACTTTTCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAA
*
70769094 CTTTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
* * *
70769159 AACACTATG-----C---T--G-ACACTTTCCTAATTGTTGGGATAGACTTGTTGACATACGCGT
131 AACACTATGCAACACTTTTGGGCACACTTTCCTAAATGTTGGGATAGACTTGCTGACATACGCTT
* * * *
70769213 TGGCTAACTCTTTGTATAAGGGTTGGGATATGCATGCTGAAGGCAACACTTAAATAAGGGTCAAC
196 TGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACAATTAAATAAGAGTCAAC
*
70769278 TTTGTCCAACACTATAC
261 TTTGTCCAACACTATGC
* * *
70769295 CAACACTTTTGGGCCGACACTTTCCTAAGTGTTAGGG-TAGACTTGCCGACATACGCTTTGGCCA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTT-GGGATAGACTTGCCAACATATGCTTTGGCCA
* * *
70769359 ACTCTTTGTATCAGGGTTGGGATATGCATGCCTAAGGGAACGCTTAAATAAGAGTCGGCTTTATC
65 ACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
* * *
70769424 CAACA-TATGCTAACACTTTTGGGCCAACACTTTCATAAATGTTAGGATAGACTTGCCGACATAC
130 CAACACTATGC-AACACTTTTGGG-C-ACACTTTCCTAAATGTTGGGATAGACTTGCTGACATAC
* * * * **
70769488 TCTTTAGCCAACTCTTTGTATAAGGGTTGGGATAT-CATACTTAAGGTAACGTTTAAATAAGAGT
192 GCTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACAATTAAATAAGAGT
*
70769552 CAACTTTGTCCAACATTATGC
257 CAACTTTGTCCAACACTATGC
* * *
70769573 CGACACCTTTGGGTCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATTCTTTGGCCAA
1 CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAA
* * * *
70769638 CTCTTTGCATAAGGGTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTGC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
**
70769703 AACACTATGCCAACACTTTTGGGCTGACACTTTCCTACGTGTTGGGATAGACTTGCTGACATACG
131 AACACTATG-CAACACTTTTGGGC--ACACTTTCCTAAATGTTGGGATAGACTTGCTGACATACG
* * * * * *
70769768 ATTTGGCCAACTCTTTGCATAAGGGTTGAGATATGCACGCCTAATGCAACAATTAAATAAGAGTC
193 CTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACAATTAAATAAGAGTC
* *
70769833 GACTTTGTCCAACACTATGT
258 AACTTTGTCCAACACTATGC
70769853 CGAC
1 CGAC
70769857 TTTTGTTATA
Statistics
Matches: 483, Mismatches: 59, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
265 4 0.01
266 122 0.25
267 3 0.01
271 1 0.00
274 1 0.00
276 1 0.00
277 3 0.01
278 160 0.33
279 143 0.30
280 45 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (277 bp):
CGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAA
CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC
AACACTATGCAACACTTTTGGGCACACTTTCCTAAATGTTGGGATAGACTTGCTGACATACGCTT
TGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACAATTAAATAAGAGTCAAC
TTTGTCCAACACTATGC
Found at i:70769795 original size:418 final size:406
Alignment explanation
Indices: 70769031--70769851 Score: 1060
Period size: 418 Copynumber: 2.0 Consensus size: 406
70769021 TCCTAAGACG
* * * *
70769031 ACACTTTTGGGCCGACACTTTTCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACT
1 ACACTTTTGGGCCAACACTTTTCTAAATGTTAGGATAGACTTGCCAACATATGCTTTAGCCAACT
* * **
70769096 TTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAA
66 CTTTGTATAAGGGTTGGGATATGCATACCTAAGGCAACGCTTAAATAAGAGTCAACTTTGTCCAA
* *** *
70769161 CACTATGCTGACACTTTCCTAATTGTTGGGATAGACTTGTTGACATACGCGTTGGCTAACTCTTT
131 CACTATGCTGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACGCGTTGGCCAACTCTTT
* *
70769226 GTATAAGGGTTGGGATATGCATGCTGAAGGCAACACTTAAATAAGGGTCAACTTTGTCCAACACT
196 GCATAAGGGTTGGGATATGCATGCTGAAGGCAACACTTAAATAAGAGTCAACTTTGTCCAACACT
*
70769291 ATACCAACACTTTTGGGCCGACACTTTCCTAAGTGTTAGGGTAGACTTGCCGACATACGCTTTGG
261 ATACCAACACTTTTGGGCCGACACTTTCCTAAGTGTTAGGGTAGACTTGCCGACATACGATTTGG
* * * * * ** *
70769356 CCAACTCTTTGTATCAGGGTTGGGATATGCATGCCTAAGGGAACGCTTAAATAAGAGTCGGCTTT
326 CCAACTCTTTGCATAAGGGTTGAGATATGCACGCCTAAGGCAACAATTAAATAAGAGTCGACTTT
70769421 ATCCAACA-TATGCTA
391 ATCCAACACTATGCTA
*
70769436 ACACTTTTGGGCCAACAC-TTTCATAAATGTTAGGATAGACTTGCCGACATACT-CTTTAGCCAA
1 ACACTTTTGGGCCAACACTTTTC-TAAATGTTAGGATAGACTTGCCAACATA-TGCTTTAGCCAA
* * *
70769499 CTCTTTGTATAAGGGTTGGGATAT-CATACTTAAGGTAACGTTTAAATAAGAGTCAACTTTGTCC
64 CTCTTTGTATAAGGGTTGGGATATGCATACCTAAGGCAACGCTTAAATAAGAGTCAACTTTGTCC
* **
70769563 AACATTATGCCGACACCTTTGGGTCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATT
129 AACACTAT---G----C------T-GACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACG
*
70769628 CTTTGGCCAACTCTTTGCATAAGGGTTGGGATATGCATGCCT-AAGGCAACACTTAAATAAGAGT
180 CGTTGGCCAACTCTTTGCATAAGGGTTGGGATATGCATG-CTGAAGGCAACACTTAAATAAGAGT
*** * * * *
70769692 TGGCTTTGTGCAACACTATGCCAACACTTTTGGGCTGACACTTTCCTACGTGTT-GGGATAGACT
244 CAACTTTGTCCAACACTATACCAACACTTTTGGGCCGACACTTTCCTAAGTGTTAGGG-TAGACT
* *
70769756 TGCTGACATACGATTTGGCCAACTCTTTGCATAAGGGTTGAGATATGCACGCCTAATGCAACAAT
308 TGCCGACATACGATTTGGCCAACTCTTTGCATAAGGGTTGAGATATGCACGCCTAAGGCAACAAT
*
70769821 TAAATAAGAGTCGACTTTGTCCAACACTATG
373 TAAATAAGAGTCGACTTTATCCAACACTATG
70769852 TCGACTTTTG
Statistics
Matches: 355, Mismatches: 42, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
404 45 0.13
405 74 0.21
406 1 0.00
407 1 0.00
411 1 0.00
417 4 0.01
418 223 0.63
419 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (406 bp):
ACACTTTTGGGCCAACACTTTTCTAAATGTTAGGATAGACTTGCCAACATATGCTTTAGCCAACT
CTTTGTATAAGGGTTGGGATATGCATACCTAAGGCAACGCTTAAATAAGAGTCAACTTTGTCCAA
CACTATGCTGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATACGCGTTGGCCAACTCTTT
GCATAAGGGTTGGGATATGCATGCTGAAGGCAACACTTAAATAAGAGTCAACTTTGTCCAACACT
ATACCAACACTTTTGGGCCGACACTTTCCTAAGTGTTAGGGTAGACTTGCCGACATACGATTTGG
CCAACTCTTTGCATAAGGGTTGAGATATGCACGCCTAAGGCAACAATTAAATAAGAGTCGACTTT
ATCCAACACTATGCTA
Found at i:70772863 original size:16 final size:16
Alignment explanation
Indices: 70772839--70772892 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
70772829 GAAACATTTT
*
70772839 TTTATTTTTTTAGCAG
1 TTTATTTTTTTAACAG
* *
70772855 TTTACTTTTTTAATAG
1 TTTATTTTTTTAACAG
*
70772871 TTTTTTTTTTTAACAG
1 TTTATTTTTTTAACAG
70772887 TTTATT
1 TTTATT
70772893 AATTTCACCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.20, C:0.06, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTATTTTTTTAACAG
Found at i:70773937 original size:38 final size:35
Alignment explanation
Indices: 70773873--70774014 Score: 121
Period size: 38 Copynumber: 3.9 Consensus size: 35
70773863 TGCATTAGAT
*
70773873 AGGTTTATCTTAACTTTTTTAAAGGTTGTCTTAAATA
1 AGGTTTATC-CAACTTTTTTAAAGGTTGTCTTAAA-A
** *
70773910 AGGTTTATCTCAACCTTTTTTAAAGGTTACCTCAGACAA
1 AGGTTTATC-CAA-CTTTTTTAAAGGTTGTCTTA-A-AA
*
70773949 A-GTTTATCCTAACTTTTTTAATA--TTGTCTTAAAC
1 AGGTTTATCC-AACTTTTTTAA-AGGTTGTCTTAAAA
*
70773983 AGGTCTATCCAAACTTTTTT-AAGGTTGTCTTA
1 AGGTTTATCC-AACTTTTTTAAAGGTTGTCTTA
70774015 GACGGGTGTA
Statistics
Matches: 87, Mismatches: 10, Indels: 18
0.76 0.09 0.16
Matches are distributed among these distances:
33 1 0.01
34 3 0.03
35 25 0.29
36 5 0.06
37 22 0.25
38 27 0.31
39 3 0.03
40 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (35 bp):
AGGTTTATCCAACTTTTTTAAAGGTTGTCTTAAAA
Found at i:70775167 original size:187 final size:187
Alignment explanation
Indices: 70774852--70775224 Score: 710
Period size: 187 Copynumber: 2.0 Consensus size: 187
70774842 CTTCTATCCA
70774852 ATTGCCATGCTCAAGTCCATCCGCATATTGTTATCCATTGCGGTGACTCTCGATTATGAGATTTG
1 ATTGCCATGCTCAAGTCCATCCGCATATTGTTATCCATTGCGGTGACTCTCGATTATGAGATTTG
* *
70774917 GAAAATAAATGTCAAGACAACGGTATTAAATGACTATCTTGAATAAATCATCTATATGATGCAAC
66 GAAAATAAATGTCAAGACAACAGTATTAAACGACTATCTTGAATAAATCATCTATATGATGCAAC
70774982 CCATTGGATATAAAACTAAAGGAAATGAGTATAAAGTTTGCAATTCACTTAGATATT
131 CCATTGGATATAAAACTAAAGGAAATGAGTATAAAGTTTGCAATTCACTTAGATATT
70775039 ATTGCCATGCTCAAGTCCATCCGCATATTGTTATCCATTGCGGTGACTCTCGATTATGAGATTTG
1 ATTGCCATGCTCAAGTCCATCCGCATATTGTTATCCATTGCGGTGACTCTCGATTATGAGATTTG
*
70775104 GAAAATAAATGTCAAGACAACAGTATTAAACGACTATCTTGAATAAATCATTTATATGATGCAAC
66 GAAAATAAATGTCAAGACAACAGTATTAAACGACTATCTTGAATAAATCATCTATATGATGCAAC
*
70775169 CCATTGGATATAAAACTAAAGGAAATGAGTATAAAGTTTGCAATTCGCTTAGATAT
131 CCATTGGATATAAAACTAAAGGAAATGAGTATAAAGTTTGCAATTCACTTAGATAT
70775225 ATGTATGAAC
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
187 182 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (187 bp):
ATTGCCATGCTCAAGTCCATCCGCATATTGTTATCCATTGCGGTGACTCTCGATTATGAGATTTG
GAAAATAAATGTCAAGACAACAGTATTAAACGACTATCTTGAATAAATCATCTATATGATGCAAC
CCATTGGATATAAAACTAAAGGAAATGAGTATAAAGTTTGCAATTCACTTAGATATT
Found at i:70781037 original size:25 final size:25
Alignment explanation
Indices: 70781009--70781059 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
70780999 GTTAGCATTT
*
70781009 GCATCTTTGATTGTTTAATAGTGAA
1 GCATCTTCGATTGTTTAATAGTGAA
70781034 GCATCTTCGATTGTTTAATAGTGAA
1 GCATCTTCGATTGTTTAATAGTGAA
70781059 G
1 G
70781060 GTACTTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (25 bp):
GCATCTTCGATTGTTTAATAGTGAA
Found at i:70782398 original size:66 final size:65
Alignment explanation
Indices: 70782328--70782471 Score: 155
Period size: 66 Copynumber: 2.2 Consensus size: 65
70782318 ATGGCCGAAG
*
70782328 ACACGCCCGTGTGCCAGGCCGTGTG-AAAACTAGAGAGTATACTGACTTATGCAACACGGCCAAG
1 ACACGCCCGTGTGCCAGGCCGTGTGCAAAA-TAGAGAGTATACTGACTTATACAACACGGCC-AG
70782392 TC
64 TC
* ** * * * * * * *
70782394 ACACGCCCATGTGTTAGGTCGTGTGCCAAATAGGGGGTATACTGACTTGTACCACACGGCCTGTC
1 ACACGCCCGTGTGCCAGGCCGTGTGCAAAATAGAGAGTATACTGACTTATACAACACGGCCAGTC
*
70782459 ACACACCCGTGTG
1 ACACGCCCGTGTG
70782472 TGAGACCGTG
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
65 14 0.22
66 47 0.73
67 3 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (65 bp):
ACACGCCCGTGTGCCAGGCCGTGTGCAAAATAGAGAGTATACTGACTTATACAACACGGCCAGTC
Found at i:70782569 original size:30 final size:28
Alignment explanation
Indices: 70782521--70782579 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 28
70782511 CACCAGGGGA
*
70782521 CACACGGCCGTGTAACATGACCGTGTGTCT
1 CACACGGCCGAGTAACATG-CC-TGTGTCT
70782551 CACACGGCCGAG-ACACATGCCTGTGTCT
1 CACACGGCCGAGTA-ACATGCCTGTGTCT
70782579 C
1 C
70782580 TGCCTGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 8 0.30
29 3 0.11
30 16 0.59
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.20
Consensus pattern (28 bp):
CACACGGCCGAGTAACATGCCTGTGTCT
Found at i:70783533 original size:26 final size:26
Alignment explanation
Indices: 70783492--70783551 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
70783482 AGCTATGAAT
* *
70783492 AGTAAGCTTCTTCTGAGCTAATAGAC
1 AGTAAGCTCCTCCTGAGCTAATAGAC
* *
70783518 AGTAAGCTCCTCCTGAGCTGATTGAC
1 AGTAAGCTCCTCCTGAGCTAATAGAC
70783544 AGTAAGCT
1 AGTAAGCT
70783552 TTATTGAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AGTAAGCTCCTCCTGAGCTAATAGAC
Found at i:70783622 original size:24 final size:26
Alignment explanation
Indices: 70783590--70783658 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 26
70783580 AAGTTGAATT
70783590 AGTAAGCTCATACGAGCTGAGA-A-C
1 AGTAAGCTCATACGAGCTGAGATATC
* * * *
70783614 AGTAAGCTCTTATGAGCTAATATATC
1 AGTAAGCTCATACGAGCTGAGATATC
70783640 -GATAAGCTCATACGAGCTG
1 AG-TAAGCTCATACGAGCTG
70783659 CGGTGAGTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
24 18 0.51
25 2 0.06
26 15 0.43
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (26 bp):
AGTAAGCTCATACGAGCTGAGATATC
Found at i:70783832 original size:27 final size:27
Alignment explanation
Indices: 70783802--70783880 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
70783792 CCAAGTATAT
70783802 CAATTACTCAATTATGCACATTCATTA
1 CAATTACTCAATTATGCACATTCATTA
*
70783829 CAATTA---AA-TA--CA-AGT-A-TA
1 CAATTACTCAATTATGCACATTCATTA
*
70783847 TCAATTACTCGATTATGCACATTCATTA
1 -CAATTACTCAATTATGCACATTCATTA
70783875 CAATTA
1 CAATTA
70783881 AATACAAGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 20
0.63 0.05 0.32
Matches are distributed among these distances:
18 2 0.05
19 7 0.18
20 2 0.05
21 2 0.05
22 1 0.03
23 4 0.10
24 2 0.05
25 2 0.05
26 2 0.05
27 13 0.33
28 2 0.05
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.35
Consensus pattern (27 bp):
CAATTACTCAATTATGCACATTCATTA
Found at i:70783844 original size:46 final size:46
Alignment explanation
Indices: 70783793--70783889 Score: 185
Period size: 46 Copynumber: 2.1 Consensus size: 46
70783783 ATTAATATTC
70783793 CAAGTATATCAATTACTCAATTATGCACATTCATTACAATTAAATA
1 CAAGTATATCAATTACTCAATTATGCACATTCATTACAATTAAATA
*
70783839 CAAGTATATCAATTACTCGATTATGCACATTCATTACAATTAAATA
1 CAAGTATATCAATTACTCAATTATGCACATTCATTACAATTAAATA
70783885 CAAGT
1 CAAGT
70783890 GTTTTAAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (46 bp):
CAAGTATATCAATTACTCAATTATGCACATTCATTACAATTAAATA
Found at i:70785148 original size:30 final size:30
Alignment explanation
Indices: 70785112--70785178 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
70785102 ACGCTACTCT
* *
70785112 TAAATATTATTCAATAAATTATAAACATTA
1 TAAATATCATTCAATAAATTATAAACATGA
*
70785142 TAAATATCATTCAATAAATTATCAACATGA
1 TAAATATCATTCAATAAATTATAAACATGA
70785172 TAAATAT
1 TAAATAT
70785179 AAAAATCATC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.37
Consensus pattern (30 bp):
TAAATATCATTCAATAAATTATAAACATGA
Found at i:70786946 original size:63 final size:64
Alignment explanation
Indices: 70786844--70786967 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 64
70786834 TCTAACTCTG
70786844 ATTATTCTAGGGATGTTGTTGTCACATTTTCACACGAAATTA-ATCATATAAATAGGACTTTCTT
1 ATTATTCTAGGGATGTTGTTGTCACATTTTCACACGAAATTAGAT-ATATAAATAGGACTTTCTT
* * * * *
70786908 ATTATTCTAGGGAT-TTTTTTTCATATTTTCACATGAAATTAGGTATATAAATAGGACTTT
1 ATTATTCTAGGGATGTTGTTGTCACATTTTCACACGAAATTAGATATATAAATAGGACTTT
70786968 TAGAAGCCTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
63 39 0.72
64 15 0.28
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (64 bp):
ATTATTCTAGGGATGTTGTTGTCACATTTTCACACGAAATTAGATATATAAATAGGACTTTCTT
Found at i:70787940 original size:27 final size:26
Alignment explanation
Indices: 70787891--70787944 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
70787881 CTGTTTTCAA
* *
70787891 GTTCTTAAACTCTATTTTCAAGATAT
1 GTTCTTAAACTATATTTTAAAGATAT
*
70787917 GTTCTTAAGCTATGATTTTAAAGATAT
1 GTTCTTAAACTAT-ATTTTAAAGATAT
70787944 G
1 G
70787945 CTTTACATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (26 bp):
GTTCTTAAACTATATTTTAAAGATAT
Found at i:70788092 original size:31 final size:31
Alignment explanation
Indices: 70788056--70788120 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
70788046 AAGTGTTTTC
*
70788056 AAGCAAGCTCCCTATGTGAGCTCTCTGTGAT
1 AAGCAAGCTCCCTATGTGAGCTCTCTATGAT
*
70788087 AAGCAAGCTCCCTATGTGAGCTTTCTATGAT
1 AAGCAAGCTCCCTATGTGAGCTCTCTATGAT
70788118 AAG
1 AAG
70788121 TCTTTGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (31 bp):
AAGCAAGCTCCCTATGTGAGCTCTCTATGAT
Found at i:70792649 original size:40 final size:40
Alignment explanation
Indices: 70792590--70792807 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
70792580 TGGATGATAA
* ** * *
70792590 CCGGGCTAAGTCCCAAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
70792630 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70792670 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70792710 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
70792750 CCAGGCTAAATCCCGAAGGCATTTGAGCG-GGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
70792790 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70792808 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 19 0.12
40 145 0.88
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70798516 original size:24 final size:23
Alignment explanation
Indices: 70798467--70798532 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
70798457 CAGTCCACGA
*
70798467 TTTTGTGGTTTTATTTTTTTCCA-T
1 TTTTGTGGTTTTA--TTTGTCCATT
70798491 TTTTGTGGTTTTATTTGTCCGTATT
1 TTTTGTGGTTTTATTTGTCC--ATT
70798516 TTTTGTGGTTTTTATTT
1 TTTTGTGG-TTTTATTT
70798533 TTCCCCCTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 6 0.16
24 14 0.38
25 9 0.24
26 8 0.22
ACGTcount: A:0.08, C:0.06, G:0.17, T:0.70
Consensus pattern (23 bp):
TTTTGTGGTTTTATTTGTCCATT
Found at i:70807598 original size:30 final size:30
Alignment explanation
Indices: 70807564--70807622 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
70807554 CTTAACTCAG
70807564 ACTTTGGAAAAATTACAATTTTGCCCCTAA
1 ACTTTGGAAAAATTACAATTTTGCCCCTAA
* * * * *
70807594 ACTTTTGCATACTTACACTTTTGCCCCTA
1 ACTTTGGAAAAATTACAATTTTGCCCCTA
70807623 GGCTCGGGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
ACTTTGGAAAAATTACAATTTTGCCCCTAA
Found at i:70817161 original size:67 final size:67
Alignment explanation
Indices: 70817048--70817182 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
70817038 CGTGTCCTTC
70817048 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
1 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
70817113 CA
66 CA
*
70817115 ACACGGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
1 ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
70817180 CA
66 CA
70817182 A
1 A
70817183 TTTAGTTGCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (67 bp):
ACACAGCTGAGAGACACGACCGTGTCTCATACCCATGTCTCGATACTGAGCATTCTATTTTGCAA
CA
Found at i:70846591 original size:55 final size:55
Alignment explanation
Indices: 70846507--70846616 Score: 159
Period size: 55 Copynumber: 2.0 Consensus size: 55
70846497 CACATGAAAA
*
70846507 ACATTATGAATTCAATCAAGTTTTGGTGGTACATCTAACCAATATGCAACAGGTC
1 ACATTATGAATTCAATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
* * * *
70846562 ACATTATGAATAT-GATCAAGTTCTGGTGGTACATCTAACCTATGTGGAACAGGTC
1 ACATTATGAAT-TCAATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
70846617 CAGTTCTTTC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 48 0.98
56 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (55 bp):
ACATTATGAATTCAATCAAGTTCTGGTGGTACATCTAACCAATATGCAACAGGTC
Found at i:70847275 original size:20 final size:20
Alignment explanation
Indices: 70847250--70847289 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
70847240 CCGATCAACA
70847250 ATCACCCAAATGGTATCTTT
1 ATCACCCAAATGGTATCTTT
70847270 ATCACCCAAATGGTATCTTT
1 ATCACCCAAATGGTATCTTT
70847290 CTTCTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
ATCACCCAAATGGTATCTTT
Found at i:70854380 original size:28 final size:26
Alignment explanation
Indices: 70854345--70854408 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
70854335 AATTACTTGA
* *
70854345 ATACCCCTATGTATGGAAAATTACTATT
1 ATACCCCTA-G-ATGCAAAATTACCATT
* *
70854373 ATATCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
70854399 ATACCCCTAG
1 ATACCCCTAG
70854409 GGTTACTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 22 0.71
27 1 0.03
28 8 0.26
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:70856117 original size:17 final size:17
Alignment explanation
Indices: 70856097--70856131 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
70856087 TTTGACAACT
70856097 CATCTCAAAGATCTGGG
1 CATCTCAAAGATCTGGG
70856114 CATCTCAAAGATCTGGG
1 CATCTCAAAGATCTGGG
70856131 C
1 C
70856132 GAGGTGGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (17 bp):
CATCTCAAAGATCTGGG
Found at i:70863947 original size:31 final size:31
Alignment explanation
Indices: 70863904--70863969 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
70863894 AACCCTTCTT
* * *
70863904 GCATTAAATCCAACCAAAAATAGTAAATATA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
*
70863935 GCATGAAATCCAACCAAAAACAGCAAATGTA
1 GCATGAAATCCAACCAAAAACAGCAAATATA
70863966 GCAT
1 GCAT
70863970 AAAAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.20, G:0.11, T:0.18
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAGCAAATATA
Found at i:70864256 original size:21 final size:21
Alignment explanation
Indices: 70864217--70864256 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70864207 TCTACTGCCA
* * *
70864217 TCGCTGCTACCTCTGCCTCTC
1 TCGCTACTACCGCTACCTCTC
70864238 TCGCTACTACCGCTACCTC
1 TCGCTACTACCGCTACCTC
70864257 CCTCACTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.47, G:0.12, T:0.30
Consensus pattern (21 bp):
TCGCTACTACCGCTACCTCTC
Found at i:70864735 original size:13 final size:14
Alignment explanation
Indices: 70864709--70864737 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
70864699 ACTAATGACG
70864709 AATTAAACCATTAT
1 AATTAAACCATTAT
70864723 AATTAAA-CATTAT
1 AATTAAACCATTAT
70864736 AA
1 AA
70864738 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:70869757 original size:9 final size:9
Alignment explanation
Indices: 70869743--70869874 Score: 62
Period size: 9 Copynumber: 14.7 Consensus size: 9
70869733 TAAGTATAAT
70869743 TAAGTTATG
1 TAAGTTATG
70869752 TAAGTTATG
1 TAAGTTATG
* * *
70869761 ATATGATATA
1 -TAAGTTATG
*
70869771 T-ATTTATG
1 TAAGTTATG
*
70869779 T-A-TTATA
1 TAAGTTATG
70869786 TAAGTTATG
1 TAAGTTATG
*
70869795 TAAATTATG
1 TAAGTTATG
70869804 TAAGTTATCCG
1 TAAGTTAT--G
70869815 -AA-TTATG
1 TAAGTTATG
*
70869822 TAAATTATG
1 TAAGTTATG
* *
70869831 TACGATATAATA
1 TAAG-T-T-ATG
*
70869843 TATATTTATG
1 TA-AGTTATG
70869853 T-A-TTATG
1 TAAGTTATG
70869860 TAAGTTATG
1 TAAGTTATG
70869869 TAAGTT
1 TAAGTT
70869875 GTTGATGGGA
Statistics
Matches: 93, Mismatches: 17, Indels: 26
0.68 0.12 0.19
Matches are distributed among these distances:
7 12 0.13
8 10 0.11
9 51 0.55
10 12 0.13
11 3 0.03
12 5 0.05
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:70870118 original size:106 final size:106
Alignment explanation
Indices: 70869994--70872021 Score: 3337
Period size: 106 Copynumber: 19.2 Consensus size: 106
70869984 AAAATAAAAT
70869994 ATTT-AAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
70870058 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
70870099 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
70870164 TTTAAAATAAAAATTTAAACACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70870205 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATTAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
70870270 TTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
70870311 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * * *
70870376 TTTAAAATAAAAATTTAAATAAAATTTAATCTAATTAGGTC
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70870417 ATTTAAAAATTAAAATAAAAGTAGAC-AAATATATTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
70870481 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGCA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* * *
70870522 ATTTAAAAATAAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
70870587 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
70870628 AGTTAAAAAGTAAAATAAAAGTAGACAAAATATTTTTCA-TGATTAAATTAAAATCCAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTT-AGTGATTAAATTAAAAT-CAAGTAAAA
* *
70870691 TATTTAAAATAAAACTTTAAATCCAATTTCATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70870734 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * *
70870799 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70870840 ATTTAAAAAATAAAATAAAAGTAGACAAAATATTTATT-GTGATTAAATTAAAATCCAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTT-TTAGTGATTAAATTAAAAT-CAAGTAAAA
70870903 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70870946 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATTAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* *
70871011 TTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
70871052 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * * *
70871117 TTTAAAATAAAAATTTAAATAAAATTTAATCTAATTAGGTC
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70871158 ATTTAAAAATTAAAATAAAAGTAGACAAAATATATTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
70871223 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGCA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* * *
70871264 ATTTAAAAATAAAAATAAAAGTAGACAATATA-TTTTAATGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
70871328 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* *
70871369 AGTTAAAAAGTAAAATAAAAGTAGACAAAATATTTTTCA-TGATTAAATTAAAATCCAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTT-AGTGATTAAATTAAAAT-CAAGTAAAA
* *
70871432 TATTTAAAATAAAACTTTAAATCCAATTTCATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70871475 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * *
70871540 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
*
70871581 ATTTAAAAAATAAAATAAAAGTAGACAAAATATTTATT-GTGATTAAATTAAAATCCAA-TAAAA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTT-TTAGTGATTAAATTAAAAT-CAAGTAAAA
70871644 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
64 TATTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
70871687 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* **
70871752 TTTAAAATAAAAATTTAAGGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* * *
70871793 CTTTGAAAATTAAAATAAAAGTAGACAAAATATTTTTTGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
*
70871858 TTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
* ** *
70871899 ATTTAAAAAATAAAATAAAAGTAGAC--AATATTTTCCGTGATTAAATTAAAATCAAATAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * * *
70871962 TTCAAAATAAAACTTTAAATACATTTTAATCTAATTCGGTA
66 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
70872003 ATTTAAAAA-TAAAATAAAA
1 ATTTAAAAATTAAAATAAAA
70872022 ATTTTAAAAT
Statistics
Matches: 1801, Mismatches: 103, Indels: 40
0.93 0.05 0.02
Matches are distributed among these distances:
103 10 0.01
104 79 0.04
105 216 0.12
106 1478 0.82
107 18 0.01
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (106 bp):
ATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTA
Found at i:70870288 original size:37 final size:35
Alignment explanation
Indices: 70870246--70870401 Score: 86
Period size: 37 Copynumber: 4.4 Consensus size: 35
70870236 ATTTTTAGTG
70870246 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
1 ATTAAA-TAAAATTAAGTAAAATATTTAAAATAAAA
* * * * ** **
70870282 ATTTAAATACAAGTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATA-AAATTAAGTAAAATATTTAAAATAAAA
* * * ***
70870319 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATT-AAATAAAATTAAG-TAAAATATTTAAAATAAAA
*
70870352 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAA-TAAAATTAAGTAAAATATTTAAAATAAAA
70870388 ATTTAAATAAAATT
1 A-TTAAATAAAATT
70870402 TAATCTAATT
Statistics
Matches: 83, Mismatches: 27, Indels: 20
0.64 0.21 0.15
Matches are distributed among these distances:
32 3 0.04
33 20 0.24
34 2 0.02
35 1 0.01
36 22 0.27
37 35 0.42
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (35 bp):
ATTAAATAAAATTAAGTAAAATATTTAAAATAAAA
Found at i:70871029 original size:37 final size:35
Alignment explanation
Indices: 70870987--70871142 Score: 86
Period size: 37 Copynumber: 4.4 Consensus size: 35
70870977 ATTTTTAGTG
70870987 ATTAAATTAAAATTAAGTAAAATATTTAAAATAAAA
1 ATTAAA-TAAAATTAAGTAAAATATTTAAAATAAAA
* * * * ** **
70871023 ATTTAAATACAAGTTAATTTAATTAGGTAATTTAAAA
1 A-TTAAATA-AAATTAAGTAAAATATTTAAAATAAAA
* * * ***
70871060 ATTAAAATAAAAGT-AGACAAAATATTT---TTAGTG
1 ATT-AAATAAAATTAAG-TAAAATATTTAAAATAAAA
*
70871093 ATTAAATTAAAATCAAGTAAAATATTTAAAATAAAA
1 ATTAAA-TAAAATTAAGTAAAATATTTAAAATAAAA
70871129 ATTTAAATAAAATT
1 A-TTAAATAAAATT
70871143 TAATCTAATT
Statistics
Matches: 83, Mismatches: 27, Indels: 20
0.64 0.21 0.15
Matches are distributed among these distances:
32 3 0.04
33 20 0.24
34 2 0.02
35 1 0.01
36 22 0.27
37 35 0.42
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (35 bp):
ATTAAATAAAATTAAGTAAAATATTTAAAATAAAA
Found at i:70871420 original size:741 final size:741
Alignment explanation
Indices: 70869994--70872021 Score: 3728
Period size: 741 Copynumber: 2.7 Consensus size: 741
70869984 AAAATAAAAT
*
70869994 ATTT-AAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
* * * *
70870058 TTTAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAG
66 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
* *
70870123 ACAAAATATTT-TTAGTGATTAAATTAAAAT-CAAGTAAAATATTTAAAATAAAAATTTAAACAC
131 ACAAAATATTTATT-GTGATTAAATTAAAATCCAA-TAAAATATTTAAAATAAAACTTTAAATAC
70870186 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
194 AATTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAA
70870251 ATTAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTA
259 ATTAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTA
70870316 AAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAA
324 AAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAA
70870381 AATAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGACAAA
389 AATAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGACAAA
70870446 TATATTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAAT
454 TATATTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAAT
70870511 TTAATTAGGCAATTTAAAAATAAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAAT
519 TTAATTAGGCAATTTAAAAATAAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAAT
70870576 CAAGTAAAATATTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTAAGTTAAAAAGTAA
584 CAAGTAAAATATTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTAAGTTAAAAAGTAA
70870641 AATAAAAGTAGACAAAATATTTTTCATGATTAAATTAAAATCCAATAAAATATTTAAAATAAAAC
649 AATAAAAGTAGACAAAATATTTTTCATGATTAAATTAAAATCCAATAAAATATTTAAAATAAAAC
70870706 TTTAAATCCAATTTCATTTAATTAGGTA
714 TTTAAATCCAATTTCATTTAATTAGGTA
70870734 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
70870799 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
66 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
70870864 ACAAAATATTTATTGTGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTTTAAATACAA
131 ACAAAATATTTATTGTGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTTTAAATACAA
70870929 TTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAAT
196 TTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAAT
70870994 TAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTAAA
261 TAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTAAA
70871059 AATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAA
326 AATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAA
70871124 TAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGACAAAAT
391 TAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGAC-AAAT
70871189 ATATTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAATT
455 ATATTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAATT
70871254 TAATTAGGCAATTTAAAAATAAAAATAAAAGTAGACAATATA-TTTTAATGATTAAATTAAAATC
520 TAATTAGGCAATTTAAAAATAAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAATC
70871318 AAGTAAAATATTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTAAGTTAAAAAGTAAA
585 AAGTAAAATATTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTAAGTTAAAAAGTAAA
70871383 ATAAAAGTAGACAAAATATTTTTCATGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACT
650 ATAAAAGTAGACAAAATATTTTTCATGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACT
70871448 TTAAATCCAATTTCATTTAATTAGGTA
715 TTAAATCCAATTTCATTTAATTAGGTA
70871475 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
1 ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
70871540 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
66 TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
70871605 ACAAAATATTTATTGTGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTTTAAATACAA
131 ACAAAATATTTATTGTGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTTTAAATACAA
70871670 TTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAAT
196 TTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAAT
* ** * * *
70871735 TAAAATCAAGTAAAATATTTAAAATAAAAATTTAAGGACAATTTAATTTAATTAGGTACTTTGAA
261 TAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTAAA
*
70871800 AATTAAAATAAAAGTAGACAAAATATTTTTTGTGATTAAATTAAAATCAAGTAAAATATTTAAAA
326 AATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAA
* * * * * *
70871865 TAAAACTTTAAAGACAATTTAATTTAATTAGGTAATTTAAAAAATAAAATAAAAGTAGAC-AATA
391 TAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGACAAATA
* * * * *
70871929 T-TTTCCGTGATTAAATTAAAATCAAATAAAATATTCAAAATAAAACTTTAAATACATTTTAATC
456 TATTT-AGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAATT
* *
70871993 TAATTCGGTAATTTAAAAAT-AAAATAAAA
520 TAATTAGGCAATTTAAAAATAAAAATAAAA
70872022 ATTTTAAAAT
Statistics
Matches: 1256, Mismatches: 27, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
738 12 0.01
739 77 0.06
740 4 0.00
741 1047 0.83
742 116 0.09
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (741 bp):
ATTTAAAAATTAAAATAAAAGTAGACAAAATATCTTTAGTGATTAAATTAAAATCAAGTAAAATA
TTTAAAATAAAACTTTAAAGAGAATTTAATTTAATTAAGTAATTTAAAAAATAAAATAAAAGTAG
ACAAAATATTTATTGTGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTTTAAATACAA
TTTAATTTAATTAGGTAATTTAAAAATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAAT
TAAAATTAAGTAAAATATTTAAAATAAAAATTTAAATACAAGTTAATTTAATTAGGTAATTTAAA
AATTAAAATAAAAGTAGACAAAATATTTTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAA
TAAAAATTTAAATAAAATTTAATCTAATTAGGTCATTTAAAAATTAAAATAAAAGTAGACAAATA
TATTTAGTGATTAAATTAAAATCAAGTAAAATATTTAAAATAAAACTTTAAATACAATTTAATTT
AATTAGGCAATTTAAAAATAAAAATAAAAGTAGACAATATATTTTTAATGATTAAATTAAAATCA
AGTAAAATATTTAAAATAAAACTTTAAAGACAATTTAATTTAATTAGGTAAGTTAAAAAGTAAAA
TAAAAGTAGACAAAATATTTTTCATGATTAAATTAAAATCCAATAAAATATTTAAAATAAAACTT
TAAATCCAATTTCATTTAATTAGGTA
Found at i:70879360 original size:20 final size:20
Alignment explanation
Indices: 70879335--70879375 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
70879325 GGCACTCAGG
70879335 CTTAACAAATCTCGAATTCC
1 CTTAACAAATCTCGAATTCC
70879355 CTTAACAAATCTCGAATTCC
1 CTTAACAAATCTCGAATTCC
70879375 C
1 C
70879376 CACACTAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (20 bp):
CTTAACAAATCTCGAATTCC
Found at i:70884546 original size:19 final size:19
Alignment explanation
Indices: 70884522--70884585 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
70884512 TAAAATAATA
70884522 ATTTATATATATTTATCTT
1 ATTTATATATATTTATCTT
** * *
70884541 ATTTATAT-TA-AAATAATA
1 ATTTATATATATTTAT-CTT
*
70884559 ATTTATATATTTTTATCTT
1 ATTTATATATATTTATCTT
70884578 ATTTATAT
1 ATTTATAT
70884586 TTATCTTCTA
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
17 2 0.06
18 11 0.33
19 18 0.55
20 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTATATATATTTATCTT
Found at i:70884553 original size:37 final size:37
Alignment explanation
Indices: 70884506--70884586 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
70884496 TTGATATATA
*
70884506 TTATTTTAAAATAATAATTTATATATATTTATCTTAT
1 TTATATTAAAATAATAATTTATATATATTTATCTTAT
*
70884543 TTATATTAAAATAATAATTTATATATTTTTATCTTAT
1 TTATATTAAAATAATAATTTATATATATTTATCTTAT
70884580 TTATATT
1 TTATATT
70884587 TATCTTCTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (37 bp):
TTATATTAAAATAATAATTTATATATATTTATCTTAT
Found at i:70884637 original size:14 final size:14
Alignment explanation
Indices: 70884618--70884673 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
70884608 AAATTATACT
70884618 CTAAACCTAAAACC
1 CTAAACCTAAAACC
* *
70884632 CTAAACCTAAGACT
1 CTAAACCTAAAACC
*
70884646 CTAAACCCT-AAACT
1 CTAAA-CCTAAAACC
*
70884660 CTAAACCTTAAACC
1 CTAAACCTAAAACC
70884674 ACAAACACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
13 3 0.08
14 30 0.83
15 3 0.08
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.20
Consensus pattern (14 bp):
CTAAACCTAAAACC
Found at i:70884658 original size:7 final size:7
Alignment explanation
Indices: 70884618--70884673 Score: 53
Period size: 7 Copynumber: 8.0 Consensus size: 7
70884608 AAATTATACT
70884618 CTAAA-C
1 CTAAACC
70884624 CTAAAACC
1 CT-AAACC
70884632 CTAAA-C
1 CTAAACC
*
70884638 CTAAGACT
1 CTAA-ACC
70884646 CTAAACC
1 CTAAACC
*
70884653 CTAAACT
1 CTAAACC
70884660 CTAAACC
1 CTAAACC
*
70884667 TTAAACC
1 CTAAACC
70884674 ACAAACACAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
6 7 0.17
7 27 0.66
8 7 0.17
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:70898566 original size:44 final size:44
Alignment explanation
Indices: 70898512--70898605 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
70898502 GAAAAGAAAC
* * * *
70898512 AAGTCAAAAGAGAGGCTCGGGTTTTTGGTAAAAGAACTATTAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
70898556 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
1 AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
70898600 AAGTTA
1 AAGTTA
70898606 CAATCATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (44 bp):
AAGTTAAAAGAGAGGCTCGAGTTTTTGGAAAAAGAACTATGAGT
Found at i:70909230 original size:15 final size:15
Alignment explanation
Indices: 70909198--70909226 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70909188 ATTTTCTGTG
70909198 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
70909213 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
70909227 ATTTTCGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:70910384 original size:45 final size:45
Alignment explanation
Indices: 70910320--70910579 Score: 248
Period size: 45 Copynumber: 5.9 Consensus size: 45
70910310 TAGGATTTCG
* * *
70910320 ATATGTGATTTTGTGTAAGACCACATCTGGGACGTTGGCATCAAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
70910365 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * *
70910410 ATATATGATTTCGTGTAAGACCACGTCTGGGACATTTGTATCGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * ** *
70910455 ATATGT-AGTTACATGTAAGACCATGTCTGGGACATCAGCCTCG-T
1 ATATGTGA-TTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* **
70910499 AT-T-TGA-TTCGTGTAAAACCTTGTCTGGGACAG-TGGCATCG--
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT
* ** * *
70910539 ATATGAGATAGCATGTAAGACCACGTTTGGGACGTTGGCAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
70910580 TTTATGGTAT
Statistics
Matches: 177, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
40 2 0.01
41 26 0.15
42 4 0.02
43 25 0.14
44 4 0.02
45 116 0.66
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (45 bp):
ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:70917103 original size:15 final size:15
Alignment explanation
Indices: 70917070--70917099 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
70917060 TATTTTTTGT
70917070 ATTTATTATGTGTGA
1 ATTTATTATGTGTGA
70917085 ATTTA-TATGTGTGA
1 ATTTATTATGTGTGA
70917099 A
1 A
70917100 ATTTTGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (15 bp):
ATTTATTATGTGTGA
Found at i:70918205 original size:45 final size:45
Alignment explanation
Indices: 70918156--70918264 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
70918146 TTGATTTTGT
** * *
70918156 GTAAGACCACGTCTGGGGTGTTGGCATCGATATATGTGATTTCAA
1 GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
* * **
70918201 GTAAGACCACGTCTGGGACGTTGGCTTCAATATATGTGGTTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
*
70918246 GTAAGACCATGTCTGGGAC
1 GTAAGACCACGTCTGGGAC
70918265 ATCGACATCG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (45 bp):
GTAAGACCACGTCTGGGACGTTGGCATCAATATATGTGATTACAA
Found at i:70918645 original size:28 final size:28
Alignment explanation
Indices: 70918614--70918671 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
70918604 TACTCTGACT
70918614 TATGAGTATATGCATATAAGTGTATATG
1 TATGAGTATATGCATATAAGTGTATATG
*
70918642 TATGAGTATATGTATATAAGTGTATATG
1 TATGAGTATATGCATATAAGTGTATATG
70918670 TA
1 TA
70918672 CTTGGTATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.41
Consensus pattern (28 bp):
TATGAGTATATGCATATAAGTGTATATG
Found at i:70918670 original size:16 final size:16
Alignment explanation
Indices: 70918619--70918671 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
70918609 TGACTTATGA
*
70918619 GTATATGCATATAAGT
1 GTATATGTATATAAGT
*
70918635 GTATATG--TAT--GA
1 GTATATGTATATAAGT
70918647 GTATATGTATATAAGT
1 GTATATGTATATAAGT
70918663 GTATATGTA
1 GTATATGTA
70918672 CTTGGTATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 8 0.26
14 6 0.19
16 17 0.55
ACGTcount: A:0.36, C:0.02, G:0.21, T:0.42
Consensus pattern (16 bp):
GTATATGTATATAAGT
Found at i:70926766 original size:39 final size:39
Alignment explanation
Indices: 70926712--70926870 Score: 273
Period size: 39 Copynumber: 4.1 Consensus size: 39
70926702 AATTTTATTA
*
70926712 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
70926751 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
70926790 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
70926829 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
70926868 CCA
1 CCA
70926871 TACACATTTC
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:70930100 original size:27 final size:27
Alignment explanation
Indices: 70930061--70930129 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
70930051 CAAAAATGGT
* * * *
70930061 AATATAATCGACACACAGTCATGACTA
1 AATATGATAGACACACAGTCATCAATA
*
70930088 AATATGATAGACACAGAGTCATCAATA
1 AATATGATAGACACACAGTCATCAATA
*
70930115 AATATGATAGGCACA
1 AATATGATAGACACA
70930130 TGGCCACTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.22
Consensus pattern (27 bp):
AATATGATAGACACACAGTCATCAATA
Done.