Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 210 of 362
Found at i:70931460 original size:46 final size:46
Alignment explanation
Indices: 70931393--70931561 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
70931383 AACCCGCCCC
*
70931393 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
70931439 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCATCCA
* * * ***
70931487 TCA-CGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
*
70931532 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
70931562 TGGATGCTCA
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 1 0.01
46 56 0.55
47 27 0.27
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCATCCA
Found at i:70931507 original size:93 final size:93
Alignment explanation
Indices: 70931398--70931568 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
70931388 GCCCCTAAGT
***
70931398 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70931463 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
70931491 GAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
70931556 CGAGTTTGGATGC
66 CGAGTTCGGATGC
70931569 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70932027 original size:30 final size:30
Alignment explanation
Indices: 70931993--70932052 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70931983 ATTTAATACG
70931993 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
70932023 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
70932053 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:70932868 original size:27 final size:27
Alignment explanation
Indices: 70932820--70932969 Score: 171
Period size: 27 Copynumber: 5.6 Consensus size: 27
70932810 AGTGGTATCA
**
70932820 TGGTAATTTTAC-AATACAAGGGTATTT
1 TGGTAATTTTACAAAT-TGAGGGTATTT
70932847 TGGTAATTTTACAAATTGAGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* * *
70932874 TTGTAATTTTAAAAATTGGGGGTATTT
1 TGGTAATTTTACAAATTGAGGGTATTT
* *
70932901 TGATAATTTTA-TAATTCGAGGGTATTT
1 TGGTAATTTTACAAATT-GAGGGTATTT
* *
70932928 CGGTAATTTTACAAACTG-GGGATATTT
1 TGGTAATTTTACAAATTGAGGG-TATTT
70932955 TGGTAATTTTACAAA
1 TGGTAATTTTACAAA
70932970 CTGAAGGTTT
Statistics
Matches: 105, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.07
27 92 0.88
28 6 0.06
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.43
Consensus pattern (27 bp):
TGGTAATTTTACAAATTGAGGGTATTT
Found at i:70936024 original size:40 final size:40
Alignment explanation
Indices: 70935962--70936206 Score: 318
Period size: 40 Copynumber: 6.2 Consensus size: 40
70935952 AAACCAAGTA
* * *
70935962 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70936001 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70936041 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70936081 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
70936121 CCTTCGGGACTTAACCCGGA-ATTAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
70936161 CCTTCGGGACTTAGCCCGGA-ATTATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70936201 CCTTCG
1 CCTTCG
70936207 TTATCATCCG
Statistics
Matches: 187, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.07
40 173 0.93
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70938298 original size:27 final size:26
Alignment explanation
Indices: 70938246--70938304 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
70938236 CCACTTATAT
*
70938246 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTATTCTGGTGACCTAGCCACA
* * *
70938272 ATATCTATATCTGGTGACTTCGTCACA
1 ATATCTAT-TCTGGTGACCTAGCCACA
70938299 ATATCT
1 ATATCT
70938305 GGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (26 bp):
ATATCTATTCTGGTGACCTAGCCACA
Found at i:70945875 original size:47 final size:47
Alignment explanation
Indices: 70945805--70946898 Score: 1794
Period size: 47 Copynumber: 23.3 Consensus size: 47
70945795 CCCTTCGGGA
* * * * *
70945805 CTTATCACATTTATACACTTTCACATCCATCACTTTGTCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
70945852 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70945899 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
70945946 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70945993 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
70946040 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
70946087 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
70946134 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70946181 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70946228 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70946275 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
70946322 CTTGTCACATATATACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70946369 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70946416 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
70946463 CTTGTCACATATATACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70946510 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
70946557 CTTATCACATATATACACTTTCGCATTCATCACATTGGCAATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70946604 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
70946651 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
70946698 CTTGTCACATATATACACTTTCGCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
70946745 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
70946792 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
70946839 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
70946886 CTTATCACATATA
1 CTTATCACATATA
70946899 CATATCTTAT
Statistics
Matches: 969, Mismatches: 77, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
47 968 1.00
48 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:70946516 original size:22 final size:22
Alignment explanation
Indices: 70946491--70946613 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
70946481 TTTCGCATTC
70946491 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
70946513 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
70946537 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * *
70946560 ATCACATATATACACTTTC-GCATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
70946584 CATCACATTGGCAATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70946607 ATCACAT
1 ATCACAT
70946614 ATATACACTT
Statistics
Matches: 70, Mismatches: 21, Indels: 20
0.63 0.19 0.18
Matches are distributed among these distances:
22 27 0.39
23 11 0.16
24 11 0.16
25 21 0.30
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70950739 original size:26 final size:27
Alignment explanation
Indices: 70950710--70950769 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
70950700 CCACATATAT
*
70950710 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
70950736 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
70950763 ATATCTG
1 ATATCTG
70950770 GCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:70955409 original size:40 final size:40
Alignment explanation
Indices: 70955350--70955535 Score: 214
Period size: 41 Copynumber: 4.6 Consensus size: 40
70955340 CTCGCACAAG
* * * * * *
70955350 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
70955390 GCCTTCGAGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCG-GACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
70955430 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
70955471 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
70955512 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTC-GGACTTAGCCCGGATAT
70955536 CATTCGAGTA
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 58 0.44
41 68 0.52
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:70955491 original size:81 final size:82
Alignment explanation
Indices: 70955350--70955533 Score: 223
Period size: 81 Copynumber: 2.3 Consensus size: 82
70955340 CTCGCACAAG
* * * * * * *
70955350 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAATGCCTTCGAGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATAT
*
70955414 AGTCGC-TAGCACAAAT
66 AGTCGCTTAGCACAAAA
* *
70955430 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGCCTTCG-GATCTTAGTCCGGAT
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGA-CTTAGCCCGGAT
*
70955493 GTAGTCGCTTAGCACAAAA
64 ATAGTCGCTTAGCACAAAA
70955512 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
70955534 ATCATTCGAG
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
79 2 0.02
80 23 0.26
81 33 0.38
82 26 0.30
83 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (82 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATAT
AGTCGCTTAGCACAAAA
Found at i:70958686 original size:35 final size:35
Alignment explanation
Indices: 70958630--70958721 Score: 103
Period size: 35 Copynumber: 2.6 Consensus size: 35
70958620 TGTCGCGCCA
* * **
70958630 TAGGACCTATATAATGTTTACACGATGTTGCCCCG
1 TAGGACCTATATACTATTTACACGATGTCACCCCG
* * **
70958665 TAGGACCTATATACTACTTACACGGTGTCATTCCG
1 TAGGACCTATATACTATTTACACGATGTCACCCCG
*
70958700 AAGGACCTATATACTATTTACA
1 TAGGACCTATATACTATTTACA
70958722 TAGTGTCGCT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (35 bp):
TAGGACCTATATACTATTTACACGATGTCACCCCG
Found at i:70976121 original size:31 final size:31
Alignment explanation
Indices: 70976083--70976142 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
70976073 GGGTTAGGGA
70976083 CACGGGCGTGTGTGACCACACGACCTACCTT
1 CACGGGCGTGTGTGACCACACGACCTACCTT
70976114 CACGGGCGTGTGTGACCACACGACCTACC
1 CACGGGCGTGTGTGACCACACGACCTACC
70976143 CACACGAGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.17
Consensus pattern (31 bp):
CACGGGCGTGTGTGACCACACGACCTACCTT
Found at i:70978194 original size:48 final size:48
Alignment explanation
Indices: 70978118--70978484 Score: 196
Period size: 48 Copynumber: 7.9 Consensus size: 48
70978108 TAGGGTTATG
* *
70978118 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCGTT-GCAATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGC-ATCAATA
* * * * *
70978166 TGTGATCCCATGTAAGGCCATATCTGGGATATTGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
** * * * ** *
70978214 TGTGATTTCGTGTAAGACCATGTCCGGGACATGGCATCGATATGAGCATCA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCA--AT-A
* ** * *
70978265 TGTAAGACCATGT-----C-----TGGGACATGGCATTGGCACCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
70978303 TGTGA-CATCATGTAAGACCATATCTGGGATATAGCATTGGCATCTATA
1 TGTGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
** * * *
70978351 TGTGATTTCGTGTAATACCATGTCTAGGACATGGCATT-G-----ATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * *
70978393 TGAGA-CATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATA
1 TGTGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
70978441 TGTGATCCCAAGTATGACTATATCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
70978485 TTACTATGTG
Statistics
Matches: 236, Mismatches: 59, Indels: 48
0.69 0.17 0.14
Matches are distributed among these distances:
38 10 0.04
39 2 0.01
41 14 0.06
42 35 0.15
43 2 0.01
46 1 0.00
47 1 0.00
48 157 0.67
49 3 0.01
50 2 0.01
51 9 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:70978342 original size:137 final size:138
Alignment explanation
Indices: 70978126--70978496 Score: 541
Period size: 137 Copynumber: 2.7 Consensus size: 138
70978116 TGTGTGATCC
* * * *
70978126 CATGTAAGACCATGTTTGGGACATGGCGTT-GCAATCAATATGTGATCCCATGTAAGGCCATATC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGC-ACCAATATGTGATCCCATGTAAGACCATATC
* *
70978190 TGGGATATTGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGTCCGGGACATGGCATCGAT
65 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGTCCAGGACATGGCATCGAT
70978255 ATGAG-CAT
130 ATGAGACAT
* *
70978263 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGTGA-CATCATGTAAGACCATATC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGTGATC-CCATGTAAGACCATATC
* * *
70978327 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAATACCATGTCTAGGACATGGCATTGAT
65 TGGGATATAGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGTCCAGGACATGGCATCGAT
70978392 ATGAGACAT
130 ATGAGACAT
* * * *
70978401 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATCCCAAGTATGACTATATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGTGATCCCATGTAAGACCATATCT
*
70978466 GGGATATGGCATTGGCATCTTACTATGTGAT
66 GGGATATAGCATTGGCATC-TA-TATGTGAT
70978497 GAGATTTTCC
Statistics
Matches: 211, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
136 1 0.00
137 118 0.56
138 81 0.38
139 3 0.01
140 8 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (138 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGTGATCCCATGTAAGACCATATCT
GGGATATAGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGTCCAGGACATGGCATCGATA
TGAGACAT
Found at i:70978475 original size:90 final size:90
Alignment explanation
Indices: 70978299--70978479 Score: 229
Period size: 90 Copynumber: 2.0 Consensus size: 90
70978289 CATTGGCACC
* * * ** **
70978299 GATATGTGACATCATGTAAGACCATATCTGGGATATAGCATTGGCATCTATATGTGATTTCGTGT
1 GATATGAGACATCATGTAAGACCATATCTGGGACATAGCATTGGCACCTATATGTGATCCCAAGT
*
70978364 AATACCATGTCTAGGACATGGCATT
66 AATACCATATCTAGGACATGGCATT
* *
70978389 GATATGAGACATCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTATATGTGATCCCAAGT
1 GATATGAGACATCATGTAAGACCATATCTGGGACATAGCATTGGCACCTATATGTGATCCCAAGT
* * *
70978454 -ATGACTATATCTGGGATATGGCATT
66 AAT-ACCATATCTAGGACATGGCATT
70978479 G
1 G
70978480 GCATCTTACT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 2 0.03
90 75 0.97
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (90 bp):
GATATGAGACATCATGTAAGACCATATCTGGGACATAGCATTGGCACCTATATGTGATCCCAAGT
AATACCATATCTAGGACATGGCATT
Found at i:70979622 original size:83 final size:83
Alignment explanation
Indices: 70979483--70979655 Score: 319
Period size: 83 Copynumber: 2.1 Consensus size: 83
70979473 GCCGTGTGTG
* * *
70979483 ACACACGGTCTGCCCCATGGGCGTGTGATCCGGCCGTGTGTTCCTTGCAGACTAATTAGGTAAAA
1 ACACACGGTCTGCCCCATGGGCGTGTGATCCGACCGTGTATTCCTTGCACACTAATTAGGTAAAA
70979548 TAGAACACCCAGTAGTAA
66 TAGAACACCCAGTAGTAA
70979566 ACACACGGTCTGCCCCATGGGCGTGTGATCCGACCGTGTATTCCTTGCACACTAATTAGGTAAAA
1 ACACACGGTCTGCCCCATGGGCGTGTGATCCGACCGTGTATTCCTTGCACACTAATTAGGTAAAA
70979631 TAGAACACCCAGTAGTAA
66 TAGAACACCCAGTAGTAA
70979649 ACACACG
1 ACACACG
70979656 AGTAGAGACA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
83 87 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (83 bp):
ACACACGGTCTGCCCCATGGGCGTGTGATCCGACCGTGTATTCCTTGCACACTAATTAGGTAAAA
TAGAACACCCAGTAGTAA
Found at i:70986373 original size:30 final size:30
Alignment explanation
Indices: 70986338--70986395 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
70986328 CCCGAAGAGA
70986338 TAGTAGAATGAGGATGATATTCTCTAAAGG
1 TAGTAGAATGAGGATGATATTCTCTAAAGG
70986368 TAGTAGAATGAGGATGATATTCTCTAAA
1 TAGTAGAATGAGGATGATATTCTCTAAA
70986396 TTTTTTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (30 bp):
TAGTAGAATGAGGATGATATTCTCTAAAGG
Found at i:70994856 original size:21 final size:21
Alignment explanation
Indices: 70994827--70994866 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
70994817 AATGTTTGCA
70994827 TGAAATTGATATTCGACCAAC
1 TGAAATTGATATTCGACCAAC
*
70994848 TGAAGTTGATATTCGACCA
1 TGAAATTGATATTCGACCA
70994867 GATATGACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
TGAAATTGATATTCGACCAAC
Found at i:70996371 original size:48 final size:48
Alignment explanation
Indices: 70996289--70996614 Score: 297
Period size: 48 Copynumber: 6.9 Consensus size: 48
70996279 TAGGGTTATG
* *
70996289 TGTGATCCCATGTAAGACCATGTCTGAGACATGGCATTGCCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * *
70996337 TGTGATCCGATGTAAGACCATATATGGGATATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** * *
70996385 TGTGATTTCGTGTAAGACCATGCCTGGGACAT-G-A----CATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * *
70996427 TGAGA-CATCATGTAAGACCATGTATGGGAAATGGCATTGGCATCGATA
1 TGTGATC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * * * * *
70996475 TGTCATCCCATATAAGTCAATATTTGGAACATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
** ** * *
70996523 TGTGATTTCGCGTAAGACAATGTCTGGGACATGGCATTGGCACCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
*** *
70996571 TGTGATCCCATGTAAGACCACACCTGGGATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
70996615 TTACTATGTT
Statistics
Matches: 215, Mismatches: 55, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
42 32 0.15
43 1 0.00
44 1 0.00
46 1 0.00
47 1 0.00
48 178 0.83
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:70996522 original size:138 final size:138
Alignment explanation
Indices: 70996297--70996555 Score: 383
Period size: 138 Copynumber: 1.9 Consensus size: 138
70996287 TGTGTGATCC
* * * * * *
70996297 CATGTAAGACCATGTCTGAGACATGGCATTGCCATCGATATGTGATCCGATGTAAGACCATATAT
1 CATGTAAGACCATGTATGAGAAATGGCATTGCCATCGATATGTCATCCCATATAAGACAATATAT
* * * *
70996362 GGGATATGGCATTGGCATCTATATGTGATTTCGTGTAAGACCATGCCTGGGACATGACATCGATA
66 GGAACATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATGACATCGATA
70996427 TGAGACAT
131 TGAGACAT
* * * *
70996435 CATGTAAGACCATGTATGGGAAATGGCATTGGCATCGATATGTCATCCCATATAAGTCAATATTT
1 CATGTAAGACCATGTATGAGAAATGGCATTGCCATCGATATGTCATCCCATATAAGACAATATAT
*
70996500 GGAACATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGTCTGGGACATG
66 GGAACATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATG
70996556 GCATTGGCAC
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 106 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (138 bp):
CATGTAAGACCATGTATGAGAAATGGCATTGCCATCGATATGTCATCCCATATAAGACAATATAT
GGAACATGGCATTGGCATCTATATGTGATTTCGCGTAAGACAATGCCTGGGACATGACATCGATA
TGAGACAT
Found at i:70999731 original size:43 final size:43
Alignment explanation
Indices: 70999684--70999766 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
70999674 ATTACCGAGA
* *
70999684 TGTGATTACATATAAGACCATGTCCGGAACATTGGCATTGTAT
1 TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTGTAT
* * *
70999727 TGTGATTACATGTAAAACCAAGTCTGGGACATTGGCATTG
1 TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTG
70999767 ATATGTGCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TGTGATTACATATAAAACCAAGTCCGGAACATTGGCATTGTAT
Found at i:71003620 original size:31 final size:31
Alignment explanation
Indices: 71003585--71003663 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
71003575 CTTGACATAT
71003585 ACTGGGTCGAAGCCTTTCCATAAATCATACC
1 ACTGGGTCGAAGCCTTTCCATAAATCATACC
* * * *
71003616 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGTCGAAGCCTTTCCATAAATCATACC
71003647 ACTGGGTCGAAGCCTTT
1 ACTGGGTCGAAGCCTTT
71003664 ATCGTAAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGTCGAAGCCTTTCCATAAATCATACC
Found at i:71003747 original size:42 final size:42
Alignment explanation
Indices: 71003687--71003778 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
71003677 TGGCCCATAG
*
71003687 GCCCATTTCAATAACACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
*
71003729 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
71003771 GCCCATTT
1 GCCCATTT
71003779 GAGGAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (42 bp):
GCCCATTTCAATAACACATGAAATACCAATGAATGTATGCAA
Found at i:71003941 original size:25 final size:25
Alignment explanation
Indices: 71003913--71003998 Score: 95
Period size: 26 Copynumber: 3.4 Consensus size: 25
71003903 CTGGAGGCCT
71003913 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
71003938 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTAATAAACTGGGGCAAA
** *
71003964 AGCCCTTTTCGGTAAACAGGGGC-AA
1 AGCCCTTTT-AATAAACTGGGGCAAA
71003989 AGCCCTTTTA
1 AGCCCTTTTA
71003999 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
24 1 0.02
25 25 0.46
26 28 0.52
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:71003962 original size:26 final size:26
Alignment explanation
Indices: 71003926--71003997 Score: 110
Period size: 26 Copynumber: 2.8 Consensus size: 26
71003916 CTCTTTTAAT
*
71003926 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
71003952 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
71003978 AACAGGGGC-AAAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
71003998 AGCACTTCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
25 11 0.26
26 32 0.74
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:71004869 original size:27 final size:27
Alignment explanation
Indices: 71004807--71004884 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
71004797 GGGCATATTC
71004807 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
71004834 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
71004861 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
71004885 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:71004955 original size:27 final size:28
Alignment explanation
Indices: 71004925--71005032 Score: 102
Period size: 27 Copynumber: 3.9 Consensus size: 28
71004915 GTAAATCTAC
71004925 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTAGTAATTTTGT
*
71004952 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTCTAGTAATTTTGT
*
71004978 AGAAAGTCAAGGGTATTTCTAG-AATTTTGT
1 --AAA-CCAAGGGTATTTCTAGTAATTTTGT
* *
71005008 AAATC-AGGGATATTT-TGGTAATTTT
1 AAACCAAGGG-TATTTCTAGTAATTTT
71005033 ACAAATTGAG
Statistics
Matches: 69, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
26 7 0.10
27 35 0.51
28 7 0.10
29 19 0.28
30 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTAGTAATTTTGT
Found at i:71005038 original size:27 final size:26
Alignment explanation
Indices: 71005008--71005110 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 26
71004998 AGAATTTTGT
71005008 AAATCAGGGATATTTTGGTAATTTTAC
1 AAATCAGGG-TATTTTGGTAATTTTAC
* * *
71005035 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAA-TCAGGGTATTTTGGTAATTTTAC
* *
71005062 AAACCAGTTGTATTTTGGTAATTTTAC
1 AAATCAG-GGTATTTTGGTAATTTTAC
*
71005089 AACT-AGGCGTATTTTGGTAATT
1 AAATCAGG-GTATTTTGGTAATT
71005111 CTACCCTACA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 18 0.29
27 39 0.63
28 5 0.08
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
AAATCAGGGTATTTTGGTAATTTTAC
Found at i:71005178 original size:27 final size:26
Alignment explanation
Indices: 71005144--71005233 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 26
71005134 AATTTCCCAG
* *
71005144 TCGAGGGTAAGACGATAATTTTATAAA
1 TCGAGGGTAAAAC-ATAATTCTATAAA
* *
71005171 TCGAGGGTAAAACAACAATTCTGTAAA
1 TCGAGGGTAAAAC-ATAATTCTATAAA
*
71005198 TCAAGGGTAAAACAGTAATTCTATAAA
1 TCGAGGGTAAAACA-TAATTCTATAAA
71005225 TCGAGGGTA
1 TCGAGGGTA
71005234 CTTTGGTAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.02
27 52 0.98
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (26 bp):
TCGAGGGTAAAACATAATTCTATAAA
Found at i:71008253 original size:42 final size:42
Alignment explanation
Indices: 71008141--71008309 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 42
71008131 GAAAAGCTAG
* * *
71008141 TACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAA
* * * * * *
71008183 TATCGATGCCACTGTCGCAAACAAGGTCTTACATGAAATCATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAA
*
71008226 TACAATGCCAATATCCCAGACATGGTCTTACACAT-AAATCTCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTT--ACATGAAA--TCAAA
* * * * *
71008271 T-CGATGTCAATGTCCCTGACGTGGTCTTACACGAAATCA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
71008310 CATATTGGAA
Statistics
Matches: 99, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
41 3 0.03
42 26 0.26
43 39 0.39
44 26 0.26
45 5 0.05
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAA
Found at i:71013394 original size:43 final size:43
Alignment explanation
Indices: 71013346--71013516 Score: 179
Period size: 43 Copynumber: 4.0 Consensus size: 43
71013336 TTTTCCGAGA
71013346 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * *
71013389 TGTGATTACGTGTAAGACCATGTATGGGACATTGGCATCAT-TA-
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT--TGTAT
* * * *
71013432 TATGATTTCGTGTAAGACCATGTCTAGGACATTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * * * *
71013474 ATGTGATAACATGTAAGACCGTATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
71013517 GACCTATATG
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 94 0.90
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:71016678 original size:48 final size:48
Alignment explanation
Indices: 71016492--71016687 Score: 275
Period size: 48 Copynumber: 4.1 Consensus size: 48
71016482 CACAATGACT
* * *
71016492 CATATCGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGACCA
1 CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
* *
71016540 AATATCGATGCCACTGCCATGTCCTAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
* * * * *
71016588 CATATCAATGCCAATGCCATGCCCCAGACCTGGTCTTACATGGGGTCA
1 CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
* * *
71016636 CATATCGATGCCAATGCCATGTCCGAGACATGGTCTTTCATGGGATTA
1 CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
71016684 CATA
1 CATA
71016688 ACCCTAATGT
Statistics
Matches: 129, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCA
Found at i:71024542 original size:48 final size:48
Alignment explanation
Indices: 71024292--71024540 Score: 287
Period size: 48 Copynumber: 5.3 Consensus size: 48
71024282 GCACAAGTAA
71024292 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * * * *
71024340 -A----AA-GCCAATAGCCCAGCTATGGCCTTCCATGATG-TCTCATATC
1 GATGCCAATGCC-ATATCCCAGATATGGTCTTACATG-GGATCACATATC
* *
71024383 GAGGCCAATGCCATATCCCAAATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * *
71024431 GATACCAATGCCATATTCCAGTTATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
* * * *
71024479 GATGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGATCACATATC
1 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
*
71024527 AATGCCAATGCCAT
1 GATGCCAATGCCAT
71024541 GTGATGGGAT
Statistics
Matches: 165, Mismatches: 27, Indels: 18
0.79 0.13 0.09
Matches are distributed among these distances:
42 3 0.02
43 30 0.18
44 2 0.01
47 2 0.01
48 125 0.76
49 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
Found at i:71030572 original size:27 final size:27
Alignment explanation
Indices: 71030541--71030718 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71030531 TAAATTGTAC
71030541 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71030568 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71030594 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71030622 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71030650 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71030677 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71030704 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71030719 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71030655 original size:82 final size:81
Alignment explanation
Indices: 71030542--71030697 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71030532 AAATTGTACA
* *
71030542 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71030606 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71030623 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71030688 TGCGAGTTGA
65 TGCGAATTGA
71030698 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71030709 original size:82 final size:81
Alignment explanation
Indices: 71030538--71030718 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71030528 GATTAAATTG
* *
71030538 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71030603 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71030619 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71030683 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71030701 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71030719 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71038652 original size:27 final size:27
Alignment explanation
Indices: 71038621--71038798 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71038611 TAAATTGTAC
71038621 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71038648 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71038674 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71038702 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71038730 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71038757 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
71038784 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71038799 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71038735 original size:82 final size:81
Alignment explanation
Indices: 71038622--71038777 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71038612 AAATTGTACA
* *
71038622 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71038686 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71038703 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71038768 TGCGAGTTGA
65 TGCGAATTGA
71038778 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71038789 original size:82 final size:81
Alignment explanation
Indices: 71038618--71038798 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71038608 GATTAAATTG
* *
71038618 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71038683 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71038699 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71038763 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71038781 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71038799 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71040333 original size:22 final size:22
Alignment explanation
Indices: 71040304--71040370 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 22
71040294 AACTTATTGA
*
71040304 TTTCAGCTCATTTGAGCTTACTG
1 TTTCAGCTCA-TAGAGCTTACTG
*
71040327 -TTCAGCTCGATAGAGCTTACCG
1 TTTCAGCTC-ATAGAGCTTACTG
71040349 TTTCAGCTCAATAGAGCTTACT
1 TTTCAGCTC-ATAGAGCTTACT
71040371 ATTTATCAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 18 0.47
23 20 0.53
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (22 bp):
TTTCAGCTCATAGAGCTTACTG
Found at i:71049421 original size:23 final size:23
Alignment explanation
Indices: 71049351--71049421 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
71049341 ATCTTACTAT
* *
71049351 TTTCAACTCATTGGAGCTTACTG
1 TTTCAACTCAATAGAGCTTACTG
* * * * *
71049374 -TTCAGCTCGATAGAGCCTGCCG
1 TTTCAACTCAATAGAGCTTACTG
*
71049396 TTTCAACTCAATAGTGCTTACTG
1 TTTCAACTCAATAGAGCTTACTG
71049419 TTT
1 TTT
71049422 ATTAGCTCAA
Statistics
Matches: 34, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
22 15 0.44
23 19 0.56
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (23 bp):
TTTCAACTCAATAGAGCTTACTG
Found at i:71057343 original size:14 final size:13
Alignment explanation
Indices: 71057315--71057347 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
71057305 TAAGTTTGTA
71057315 ATGG-AATGAATT
1 ATGGTAATGAATT
71057327 ATGGTAATGAGATT
1 ATGGTAATGA-ATT
71057341 ATGGTAA
1 ATGGTAA
71057348 ATTACATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 5 0.26
14 10 0.53
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
ATGGTAATGAATT
Found at i:71059581 original size:42 final size:42
Alignment explanation
Indices: 71059519--71059671 Score: 164
Period size: 42 Copynumber: 3.6 Consensus size: 42
71059509 TAAGATTATG
* * * *
71059519 TGTAAAACCATATCTGGGATATGGCATCTATATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
* * **
71059561 TGTAAGTCCATATCTAGGATATAGCATCGATATGAGACTTTT
1 TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
* * * *
71059603 TGTAAGACCATAGCTAGGCTATTGGCATCGATACGAGA-TCCA
1 TGTAAGACCATATCTAGGATA-TGGCATCGATATGAGACTTCA
* *
71059645 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
71059672 TGGTAAGGTA
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
41 6 0.07
42 71 0.78
43 14 0.15
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCGATATGAGACTTCA
Found at i:71064805 original size:27 final size:27
Alignment explanation
Indices: 71064775--71064831 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
71064765 TGTCACATTC
*
71064775 ACTGTTACTGGTGGCTATCCCACAAAT
1 ACTGATACTGGTGGCTATCCCACAAAT
* * * *
71064802 ACTGATATTGGTGGCTTTGCCACAATT
1 ACTGATACTGGTGGCTATCCCACAAAT
71064829 ACT
1 ACT
71064832 ATTTCTAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
ACTGATACTGGTGGCTATCCCACAAAT
Found at i:71065081 original size:33 final size:34
Alignment explanation
Indices: 71065024--71065088 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
71065014 CCACACTATC
* *
71065024 ACTGTATAGGGCTAAGTCCCAGACTA-TACTGTT
1 ACTGAATAGGGCTAAGGCCCAGACTATTACTGTT
* *
71065057 ACTGAATAGGGCTCAGGCCTAGACTATTACTG
1 ACTGAATAGGGCTAAGGCCCAGACTATTACTG
71065089 CATGCATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 22 0.81
34 5 0.19
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (34 bp):
ACTGAATAGGGCTAAGGCCCAGACTATTACTGTT
Found at i:71070387 original size:46 final size:47
Alignment explanation
Indices: 71070283--71070396 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 47
71070273 TGTCTTCGAC
** * *
71070283 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
71070331 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
71070377 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
71070397 TTGTCCTGTC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.48
48 30 0.52
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:71074709 original size:46 final size:47
Alignment explanation
Indices: 71074604--71074724 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 47
71074594 TGTCTTCGAC
* * * *
71074604 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACATACATGACTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * * * * *
71074652 ATGGGCTTACATGGCTCATTCCTGTCTCTAAAGCC-ATATATCTGAT
1 ATGGACATACATGACTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
71074698 ATGGACATACATGACTCATTTCTGTCT
1 ATGGACATACATGACTCATTCCTGTCT
71074725 TGTCGTGTCC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
46 32 0.52
48 29 0.48
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACATACATGACTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:71078987 original size:46 final size:47
Alignment explanation
Indices: 71078883--71079002 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
71078873 TGTCTTCGAC
** * *
71078883 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
71078931 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
71078977 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
71079003 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:71083278 original size:46 final size:47
Alignment explanation
Indices: 71083174--71083287 Score: 149
Period size: 48 Copynumber: 2.4 Consensus size: 47
71083164 TGTCTTCGAC
** * *
71083174 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * *
71083222 ATGGTCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
71083268 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
71083288 TATGTCTTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 28 0.48
48 30 0.52
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:71083294 original size:46 final size:47
Alignment explanation
Indices: 71083174--71083294 Score: 136
Period size: 46 Copynumber: 2.6 Consensus size: 47
71083164 TGTCTTCGAC
** * * *
71083174 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCA-ATATATATAAT
* * * *
71083222 ATGGTCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCAATATATATAAT
*
71083268 ATGGACTTACATGGCTCATTTATGTCT
1 ATGGACTTACATGGCTCATTCATGTCT
71083295 TGTCCTGTCC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCATGTCTCCAAAGCCAATATATATAAT
Found at i:71087931 original size:40 final size:40
Alignment explanation
Indices: 71087729--71087924 Score: 324
Period size: 40 Copynumber: 4.9 Consensus size: 40
71087719 TACCTTGGAT
*
71087729 TTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGAC
*
71087768 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
71087808 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
* * *
71087848 TTAGCCCGAATATAGTAACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
71087888 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGG
71087925 ATCTTAGTCC
Statistics
Matches: 146, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.03
40 141 0.97
41 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:71089355 original size:13 final size:13
Alignment explanation
Indices: 71089339--71089366 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71089329 TTTATTATTT
71089339 TTAACACAAAATA
1 TTAACACAAAATA
71089352 TTAACACAAAATA
1 TTAACACAAAATA
71089365 TT
1 TT
71089367 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:71095734 original size:40 final size:40
Alignment explanation
Indices: 71095562--71095727 Score: 255
Period size: 40 Copynumber: 4.2 Consensus size: 40
71095552 AACCCAAGTA
* *
71095562 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
71095601 CCTTCGGGACTTAGCCCAGAAATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
71095641 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
71095681 CCTTCGGGACTTAGCCCGGATATAGTCACGAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
71095721 CCTTCGG
1 CCTTCGG
71095728 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.11
40 102 0.88
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:71097159 original size:13 final size:13
Alignment explanation
Indices: 71097143--71097170 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71097133 TTTATTATTT
71097143 TTAACACAAAATA
1 TTAACACAAAATA
71097156 TTAACACAAAATA
1 TTAACACAAAATA
71097169 TT
1 TT
71097171 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:71099115 original size:27 final size:27
Alignment explanation
Indices: 71099079--71099143 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
71099069 CCCCAAAATA
* *
71099079 GGTAAAATGACTGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATACCCCTATAG
* *
71099106 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTATAG
71099133 GGTAAAATGAC
1 GGTAAAATGAC
71099144 GATTATTCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTATAG
Found at i:71099328 original size:27 final size:26
Alignment explanation
Indices: 71099278--71099328 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71099268 ATGGAGGAAG
* *
71099278 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGACTACGCCACATT
*
71099304 TACTGTTACTGGTGGCTACGCCACA
1 TACTG-TACTGGTGACTACGCCACA
71099329 AATACTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.24
27 16 0.76
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (26 bp):
TACTGTACTGGTGACTACGCCACATT
Found at i:71099334 original size:27 final size:26
Alignment explanation
Indices: 71099278--71099334 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 26
71099268 ATGGAGGAAG
* * **
71099278 TACTGTACTGGTGACTATGTCACATT
1 TACTGTACTGGTGACTACGCCACAAA
*
71099304 TACTGTTACTGGTGGCTACGCCACAAA
1 TACTG-TACTGGTGACTACGCCACAAA
71099331 TACT
1 TACT
71099335 TTGCCACATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
TACTGTACTGGTGACTACGCCACAAA
Found at i:71099548 original size:28 final size:28
Alignment explanation
Indices: 71099517--71099600 Score: 69
Period size: 33 Copynumber: 2.8 Consensus size: 28
71099507 TGTTGTATTG
*
71099517 GGCTTAGGCCCACACTGTTACTGTATAA
1 GGCTTAGGCCCACACTGTTACTGAATAA
* * *
71099545 GGCTAAGGCCTAAACTGTACTGTTACTGAATAG
1 GGCTTAGGCC--CAC---ACTGTTACTGAATAA
* *
71099578 GGCTTAGGCCCAGACTATTACTG
1 GGCTTAGGCCCACACTGTTACTG
71099601 CACGCATTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
28 18 0.42
30 2 0.05
31 1 0.02
33 22 0.51
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (28 bp):
GGCTTAGGCCCACACTGTTACTGAATAA
Found at i:71103094 original size:12 final size:12
Alignment explanation
Indices: 71103077--71103106 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
71103067 TGTTGTTGTC
71103077 TTCTTCATCATG
1 TTCTTCATCATG
71103089 TTCTTCATCATG
1 TTCTTCATCATG
*
71103101 ATCTTC
1 TTCTTC
71103107 CCTACCATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.07, T:0.50
Consensus pattern (12 bp):
TTCTTCATCATG
Found at i:71110538 original size:21 final size:21
Alignment explanation
Indices: 71110509--71110564 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
71110499 TCATATTTTA
71110509 CTTTATGTTCAGCTCTTACAAG
1 CTTT-TGTTCAGCTCTTACAAG
* *
71110531 CTTTTGTTCAACTCTTATAAG
1 CTTTTGTTCAGCTCTTACAAG
*
71110552 CTTCTGTTCAGCT
1 CTTTTGTTCAGCT
71110565 TTCGAGCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (21 bp):
CTTTTGTTCAGCTCTTACAAG
Found at i:71112906 original size:46 final size:47
Alignment explanation
Indices: 71112770--71113036 Score: 223
Period size: 46 Copynumber: 5.7 Consensus size: 47
71112760 AGGATATAAT
* *
71112770 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCA-CGTATCCGT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TAT---A
* * * * *
71112820 GTCGATGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCATATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATC-TATA
* **
71112866 GTCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATCTATA
* * *
71112911 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCA-A
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCT-ATA
* *
71112957 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATG
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCAT-CTATA
*
71113006 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACT
71113037 AGCACACAAA
Statistics
Matches: 180, Mismatches: 26, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 65 0.36
47 27 0.15
48 28 0.16
49 5 0.03
50 30 0.17
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTATA
Found at i:71112985 original size:94 final size:93
Alignment explanation
Indices: 71112767--71113044 Score: 306
Period size: 94 Copynumber: 3.0 Consensus size: 93
71112757 CATAGGATAT
* * *
71112767 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCACGTATC-CG-TGTCGATGCCA
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-AC--ATCTCGAGGCCGATG-CA
*
71112830 TGTCCCAGACATGGTCTTATACT-G-ACACATC
62 TGTCCCAGACAT-GTCTTACACTAGCACACATC
*
71112861 ATATAGTCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATGCATG
1 A-AT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATCTCGAGGCCGATGCATG
* * *
71112923 TCCCAGACATGTCTTACACTAGCTCTCGTCTC
64 TCCCAGACATGTCTTACACTAGCACAC--ATC
*
71112955 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT--ATGGCCGATGCATG
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACAT-CTCGA-GGCCGATGCATG
71113017 TCCCAGACATGTCTTACACTAGCACACA
64 TCCCAGACATGTCTTACACTAGCACACA
71113045 AATGACCCGA
Statistics
Matches: 158, Mismatches: 13, Indels: 28
0.79 0.07 0.14
Matches are distributed among these distances:
90 12 0.08
91 17 0.11
92 16 0.10
93 18 0.11
94 71 0.45
95 18 0.11
96 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (93 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATCTCGAGGCCGATGCATGTC
CCAGACATGTCTTACACTAGCACACATC
Found at i:71113031 original size:140 final size:141
Alignment explanation
Indices: 71112770--71113036 Score: 355
Period size: 140 Copynumber: 1.9 Consensus size: 141
71112760 AGGATATAAT
** *
71112770 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTCACGTATCCGTGTCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCT-ACGTATCAATGCCGATGCCATGTCC
* * *
71112835 CAGACATGGTCTTATACTGACACATCATATAGTCGATGCATGTCCCAAACATGTCTTACACTGGC
65 CAAACATGGTCTTACACTGACACATCATATAGCCGATGCATGTCCCAAACATGTCTTACACTGGC
71112900 TTACATCTCGAG
130 TTACATCTCGAG
* *
71112912 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCTCT-CGTCTCAATGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCTACGTATCAATGCCGATGCCATGTCC
* * *
71112973 CAAACATGGTCTTACACTGGCTC-TCATAATATGGCCGATGCATGTCCCAGACATGTCTTACACT
65 CAAACATGGTCTTACACTGACACATCAT-ATA--GCCGATGCATGTCCCAAACATGTCTTACACT
71113037 AGCACACAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
137 4 0.04
138 42 0.38
139 1 0.01
140 43 0.39
141 13 0.12
142 7 0.06
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCTACGTATCAATGCCGATGCCATGTCCC
AAACATGGTCTTACACTGACACATCATATAGCCGATGCATGTCCCAAACATGTCTTACACTGGCT
TACATCTCGAG
Found at i:71120313 original size:19 final size:19
Alignment explanation
Indices: 71120289--71120325 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
71120279 GGTCAAAACT
71120289 CCAATTGCTGACCAAGTCG
1 CCAATTGCTGACCAAGTCG
*
71120308 CCAATTTCTGACCAAGTC
1 CCAATTGCTGACCAAGTC
71120326 TCCCTTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (19 bp):
CCAATTGCTGACCAAGTCG
Found at i:71120825 original size:27 final size:27
Alignment explanation
Indices: 71120770--71120829 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
71120760 ATACTAAATA
**
71120770 ATAAAATATATAATGAAATTATGTTAT
1 ATAAAATATATAATGAAATTAAATTAT
*
71120797 ATAAAATA-ATAATTAAATTAAATTAAT
1 ATAAAATATATAATGAAATTAAATT-AT
71120824 ATAAAA
1 ATAAAA
71120830 AGTAAATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (27 bp):
ATAAAATATATAATGAAATTAAATTAT
Found at i:71121868 original size:3 final size:3
Alignment explanation
Indices: 71121860--71121884 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71121850 ATTCTTCACA
71121860 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
71121885 TTTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:71126622 original size:21 final size:21
Alignment explanation
Indices: 71126589--71126647 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
71126579 TCGTACTTTT
*
71126589 TGCTCGCCTCTGCCTCCCTCGC
1 TGCT-GCCGCTGCCTCCCTCGC
*
71126611 TGCTGCCGCTGCCTCTCTCGC
1 TGCTGCCGCTGCCTCCCTCGC
* *
71126632 TACTGCCGTTGCCTCC
1 TGCTGCCGCTGCCTCC
71126648 TTATCTGCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.02, C:0.49, G:0.20, T:0.29
Consensus pattern (21 bp):
TGCTGCCGCTGCCTCCCTCGC
Found at i:71127097 original size:13 final size:14
Alignment explanation
Indices: 71127071--71127099 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
71127061 ACTAACGATG
71127071 AATTAAATCATTAT
1 AATTAAATCATTAT
71127085 AATTAAA-CATTAT
1 AATTAAATCATTAT
71127098 AA
1 AA
71127100 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAATCATTAT
Found at i:71130397 original size:12 final size:12
Alignment explanation
Indices: 71130382--71130407 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71130372 ATCATCCTCT
71130382 TCATCAGATTCA
1 TCATCAGATTCA
71130394 TCATCAGATTCA
1 TCATCAGATTCA
71130406 TC
1 TC
71130408 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:71132135 original size:9 final size:9
Alignment explanation
Indices: 71132121--71132217 Score: 69
Period size: 9 Copynumber: 11.0 Consensus size: 9
71132111 TAACTATAAT
71132121 TAAGTTATG
1 TAAGTTATG
71132130 TAAGTTATG
1 TAAGTTATG
* * *
71132139 ATATGATATA
1 -TAAGTTATG
*
71132149 T-ATTTATG
1 TAAGTTATG
71132157 T-A-TTATG
1 TAAGTTATG
71132164 TAAGTTATG
1 TAAGTTATG
*
71132173 TAAATTATG
1 TAAGTTATG
71132182 TAAGTTATCCG
1 TAAGTTAT--G
71132193 -AA-TTATG
1 TAAGTTATG
*
71132200 TAAATTATG
1 TAAGTTATG
*
71132209 TAAGATATG
1 TAAGTTATG
71132218 ATATATATCT
Statistics
Matches: 70, Mismatches: 11, Indels: 14
0.74 0.12 0.15
Matches are distributed among these distances:
7 7 0.10
8 8 0.11
9 46 0.66
10 8 0.11
11 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:71132444 original size:12 final size:12
Alignment explanation
Indices: 71132427--71132458 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
71132417 TCTTGAGATT
71132427 ATGGAAAATCAC
1 ATGGAAAATCAC
71132439 ATGGAAAATCAC
1 ATGGAAAATCAC
71132451 ATGGAAAA
1 ATGGAAAA
71132459 AAAATCACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.12, G:0.19, T:0.16
Consensus pattern (12 bp):
ATGGAAAATCAC
Found at i:71132472 original size:15 final size:16
Alignment explanation
Indices: 71132443--71132479 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
71132433 AATCACATGG
71132443 AAAATCACATGGAAAA
1 AAAATCACATGGAAAA
71132459 AAAATCACAT-GAAAA
1 AAAATCACATGGAAAA
*
71132474 ATAATC
1 AAAATC
71132480 TAAGGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.62, C:0.14, G:0.08, T:0.16
Consensus pattern (16 bp):
AAAATCACATGGAAAA
Found at i:71133849 original size:26 final size:26
Alignment explanation
Indices: 71133820--71133927 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
71133810 TGGTACAAAT
71133820 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
71133846 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71133872 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
71133898 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
71133924 TGAT
1 TGAT
71133928 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:71135436 original size:26 final size:26
Alignment explanation
Indices: 71135407--71135459 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
71135397 TTTACAATTT
*
71135407 TACCCTTAGTGGATAAATT-ACCGAAA
1 TACCCGTAG-GGATAAATTGACCGAAA
* *
71135433 TACCCGTAGGGTTAAATTGACCTAAA
1 TACCCGTAGGGATAAATTGACCGAAA
71135459 T
1 T
71135460 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (26 bp):
TACCCGTAGGGATAAATTGACCGAAA
Found at i:71137866 original size:37 final size:37
Alignment explanation
Indices: 71137807--71137915 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
71137797 AGCTCAGACG
* *
71137807 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
71137844 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
71137881 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
71137916 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:71138215 original size:98 final size:98
Alignment explanation
Indices: 71138065--71138344 Score: 508
Period size: 98 Copynumber: 2.9 Consensus size: 98
71138055 CATCGCCTAC
*
71138065 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCC
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCC
71138129 ATTCGGCTTTACCACATATACATATCTCATATAT
65 ATTCGGCTTTACCACATATACATATCTCATATAT
*
71138163 ATATTTCACATTGACCAGTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
71138228 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
71138261 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
71138326 TTCGGCTTTACCACATATA
66 TTCGGCTTTACCACATATA
71138345 TGCATGTTCA
Statistics
Matches: 176, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
98 175 0.99
99 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:71138349 original size:50 final size:48
Alignment explanation
Indices: 71138062--71138344 Score: 435
Period size: 48 Copynumber: 5.8 Consensus size: 48
71138052 GCACATCGCC
*
71138062 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
71138110 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
71138160 TATATATTTCACATT-GACCAGTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
71138208 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
71138258 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
71138306 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
71138345 TGCATGTTCA
Statistics
Matches: 216, Mismatches: 11, Indels: 16
0.89 0.05 0.07
Matches are distributed among these distances:
48 126 0.58
49 4 0.02
50 86 0.40
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:71138386 original size:22 final size:22
Alignment explanation
Indices: 71138360--71138478 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
71138350 GTTCATATTC
71138360 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
71138382 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
71138406 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
71138429 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
71138453 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
71138476 ATC
1 ATC
71138479 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:71138393 original size:47 final size:47
Alignment explanation
Indices: 71138314--71138507 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
71138304 CATACATATT
* * * *
71138314 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71138361 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71138408 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
71138455 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71138502 TCACAT
1 TCACAT
71138508 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71138438 original size:94 final size:93
Alignment explanation
Indices: 71138266--71138507 Score: 308
Period size: 94 Copynumber: 2.6 Consensus size: 93
71138256 TATATATATT
* * *
71138266 TCACATTGACCATTCGGCTTTA-CCACATATGCATATCTCATACATAT-TTCACATTAGCCATTC
1 TCACATTGGCCATTCGGCCTTATCCACATATGCATA-CTC--ACAT-TCATCACATTAGCCATTC
* *
71138329 GGCTTTACCACATATATGCATGTTCATATTCA
62 GGCCTTACCACATATATGCATGTTCACATTCA
* *
71138361 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACATTAGCCATTCGGC
*
71138426 CTTATCACATATATGCATGTTCACATTCA
65 CTTACCACATATATGCATGTTCACATTCA
* * * *
71138455 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATACTCACATTCATCACAT
71138508 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.72
95 20 0.15
96 4 0.03
97 11 0.08
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCA
Found at i:71141326 original size:18 final size:18
Alignment explanation
Indices: 71141303--71141343 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
71141293 AAAGGAAACT
71141303 GATGCGAAAGCCATTACA
1 GATGCGAAAGCCATTACA
71141321 GATGCGAAAGCCATTACA
1 GATGCGAAAGCCATTACA
71141339 GATGC
1 GATGC
71141344 AACAGGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (18 bp):
GATGCGAAAGCCATTACA
Found at i:71142465 original size:18 final size:18
Alignment explanation
Indices: 71142442--71142484 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
71142432 AATCTTCTCT
71142442 ATAACATACCCATATGAA
1 ATAACATACCCATATGAA
71142460 ATAACATACCCATATGAA
1 ATAACATACCCATATGAA
71142478 ATAACAT
1 ATAACAT
71142485 GAATAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.51, C:0.21, G:0.05, T:0.23
Consensus pattern (18 bp):
ATAACATACCCATATGAA
Found at i:71143143 original size:40 final size:40
Alignment explanation
Indices: 71143063--71143153 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
71143053 CAATTAAACA
* ** *
71143063 TTTAGTGGCG-TTTTACAAAAGCGTCGCTAAATCTCAATT
1 TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
* * *
71143102 TTTTGCGGCGTTTTTACAAAAGCACCACTAATTCTCTATT
1 TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
71143142 TTTAGCGGCGTT
1 TTTAGCGGCGTT
71143154 ATGAAAACAC
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 8 0.19
40 35 0.81
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTACAAAAGCACCACTAAATCTCAATT
Found at i:71143356 original size:15 final size:15
Alignment explanation
Indices: 71143315--71143365 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
71143305 TTTGAAAAAA
*
71143315 ATTTAATTATATTGAAT
1 ATTTAA-TAT-TTAAAT
* *
71143332 AATTATTATTTAAAT
1 ATTTAATATTTAAAT
71143347 ATTTAATATTTAAAT
1 ATTTAATATTTAAAT
71143362 -TTTA
1 ATTTA
71143366 GGTAAATCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.14
15 18 0.62
16 3 0.10
17 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTAATATTTAAAT
Found at i:71143841 original size:5 final size:5
Alignment explanation
Indices: 71143833--71143857 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71143823 AAAAATACTA
71143833 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
71143858 TAAAATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:71144487 original size:21 final size:21
Alignment explanation
Indices: 71144463--71144508 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
71144453 TGGATTAGTG
* * *
71144463 TTTATGGTTTATGTTTTAAAA
1 TTTAGGGTTTAGGGTTTAAAA
*
71144484 TTTAGGGTTTAGGGTTTAGAA
1 TTTAGGGTTTAGGGTTTAAAA
71144505 TTTA
1 TTTA
71144509 ATGTTTAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAAAA
Found at i:71144906 original size:41 final size:41
Alignment explanation
Indices: 71144821--71145240 Score: 460
Period size: 41 Copynumber: 10.3 Consensus size: 41
71144811 TTTTGCGGCA
*
71144821 TTTGGACCAAAAACGCCGCTATTAATCA-TTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * *
71144861 TTTGGACCAAAAACACCGCTATTCATAAGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
71144902 TTTGGAACAAAAATGCCGCTATTGATCAGTTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
71144943 TTTGGGA-TAAAAACGCCGCTATTGATCAGTTTTTAGAGGCG
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * * *
71144984 TTT-AACCAAAAACGCTGCTATTCA-CAAGTTTTTAGTGGCC
1 TTTGGACCAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCG
* * * * * *
71145024 TTTGAAACAAAAAAGCCGTTATTAATCAATTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* * * *
71145065 CTTGGGCAAAAAACGCCGCTATTGATCAGTTTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
71145106 TTTGGA-CAAAAACACCGCTATTGATCAGTTTTTAGTGGTG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* *
71145146 TTTGGGA-TAAAAACGCCGCTATTGATCAATTTTTAGTGGCG
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
* ** * *
71145187 TTTTGG-CTAAAAACGTTGCTATTGGTCGGTTTTTAGTGGCG
1 -TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
71145228 TTTTGG-CCAAAAA
1 -TTTGGACCAAAAA
71145241 TGCACTATTG
Statistics
Matches: 323, Mismatches: 48, Indels: 17
0.83 0.12 0.04
Matches are distributed among these distances:
39 2 0.01
40 90 0.28
41 224 0.69
42 7 0.02
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG
Found at i:71144920 original size:81 final size:81
Alignment explanation
Indices: 71144821--71145230 Score: 422
Period size: 81 Copynumber: 5.0 Consensus size: 81
71144811 TTTTGCGGCA
* * *
71144821 TTTGGACCAAAAACGCCGCTATTAATCA-TTTTTAGTGGCGTTTGGACCAAAAACACCGCTATTC
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGA-CAAAAACACCGCTATTG
71144885 ATAAGTTTTTAGTGGCG
65 ATAAGTTTTTAGTGGCG
* * *
71144902 TTTGGAACAAAAATGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGATAAAAACGCCGCTATTG
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTT-GGACAAAAACACCGCTATTG
* *
71144967 ATCAGTTTTTAGAGGCG
65 ATAAGTTTTTAGTGGCG
* * * * *
71144984 TTT--AACCAAAAACGCTGCTATTCA-CAAGTTTTTAGTGGCCTTTGAAACAAAAA-AGCCGTTA
1 TTTGGAA-CAAAAACGCCGCTATTGATC-AGTTTTTAGTGGCGTTTG-GACAAAAACA-CCGCTA
*
71145045 TTAATCAA-TTTTTAGTGGCG
62 TTGAT-AAGTTTTTAGTGGCG
* * *
71145065 CTTGG-GCAAAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTTGGACAAAAACACCGCTATTG
1 TTTGGAAC-AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACACCGCTATTG
* *
71145129 ATCAGTTTTTAGTGGTG
65 ATAAGTTTTTAGTGGCG
* * * ***
71145146 TTTGGGATAAAAACGCCGCTATTGATCAATTTTTAGTGGCGTTTTGG-CTAAAAACGTTGCTATT
1 TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGAC-AAAAACACCGCTATT
* **
71145210 GGTCGGTTTTTAGTGGCG
64 GATAAGTTTTTAGTGGCG
71145228 TTT
1 TTT
71145231 TGGCCAAAAA
Statistics
Matches: 272, Mismatches: 41, Indels: 31
0.79 0.12 0.09
Matches are distributed among these distances:
80 5 0.02
81 148 0.54
82 115 0.42
83 4 0.01
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34
Consensus pattern (81 bp):
TTTGGAACAAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGACAAAAACACCGCTATTGA
TAAGTTTTTAGTGGCG
Found at i:71145250 original size:122 final size:122
Alignment explanation
Indices: 71144829--71145240 Score: 531
Period size: 122 Copynumber: 3.4 Consensus size: 122
71144819 CATTTGGACC
* *
71144829 AAAAACGCCGCTATTAATCA-TTTTTAGTGGCGTTTGGACCAAAAACACCGCTATTCATAAGTTT
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGG-CCAAAAACACCGCTATTCATCAGTTT
* * *
71144893 TTAGTGGCGTTTGGAACAAAAATGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGGAT
65 TTAGTGGCGTTTGGAACAAAAAAGCCGCTATTGATCAATTTTTAGTGGCGTTTGGGCT
* ** * *
71144951 AAAAACGCCGCTATTGATCAGTTTTTAGAGGCGTTTAACCAAAAACGCTGCTATTCA-CAAGTTT
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGCCAAAAACACCGCTATTCATC-AGTTT
* * * * * *
71145015 TTAGTGGCCTTTGAAACAAAAAAGCCGTTATTAATCAATTTTTAGTGGCGCTTGGGCA
65 TTAGTGGCGTTTGGAACAAAAAAGCCGCTATTGATCAATTTTTAGTGGCGTTTGGGCT
* * *
71145073 AAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTTGGACAAAAACACCGCTATTGATCAGTTTT
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGCCAAAAACACCGCTATTCATCAGTTTT
* * * * *
71145138 TAGTGGTGTTTGGGATAAAAACGCCGCTATTGATCAATTTTTAGTGGCGTTTTGGCT
66 TAGTGGCGTTTGGAACAAAAAAGCCGCTATTGATCAATTTTTAGTGGCGTTTGGGCT
** * *
71145195 AAAAACGTTGCTATTGGTCGGTTTTTAGTGGCGTTTTGGCCAAAAA
1 AAAAACGCCGCTATTGATCAGTTTTTAGTGGCG-TTTGGCCAAAAA
71145241 TGCACTATTG
Statistics
Matches: 245, Mismatches: 41, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
122 219 0.89
123 26 0.11
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (122 bp):
AAAAACGCCGCTATTGATCAGTTTTTAGTGGCGTTTGGCCAAAAACACCGCTATTCATCAGTTTT
TAGTGGCGTTTGGAACAAAAAAGCCGCTATTGATCAATTTTTAGTGGCGTTTGGGCT
Found at i:71146573 original size:21 final size:21
Alignment explanation
Indices: 71146549--71146592 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
71146539 TAAAGCAAAT
71146549 GCAGCAGCGAA-GGAAGCAGAG
1 GCAGCAGC-AAGGGAAGCAGAG
* *
71146570 GCAGTAGCAAGGGCAGCAGAG
1 GCAGCAGCAAGGGAAGCAGAG
71146591 GC
1 GC
71146593 GACAAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.34, C:0.20, G:0.43, T:0.02
Consensus pattern (21 bp):
GCAGCAGCAAGGGAAGCAGAG
Found at i:71155227 original size:32 final size:32
Alignment explanation
Indices: 71155186--71155247 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
71155176 ACCTCCTCCG
*
71155186 GCCGGACCGGTGACCCCTCCCCTGGCCGGAAC
1 GCCGAACCGGTGACCCCTCCCCTGGCCGGAAC
*
71155218 GCCGAACCGGTGACCCCTTCCCTGGCCGGA
1 GCCGAACCGGTGACCCCTCCCCTGGCCGGA
71155248 TCCCTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.13, C:0.45, G:0.31, T:0.11
Consensus pattern (32 bp):
GCCGAACCGGTGACCCCTCCCCTGGCCGGAAC
Found at i:71155768 original size:3 final size:3
Alignment explanation
Indices: 71155736--71155785 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
71155726 AATATTCTTT
* * *
71155736 TTA TTT TTA -TA TTA TTA ATA TTA -TA CTA TTA TTA TTA TTA TTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
71155783 TTA
1 TTA
71155786 GTATATACTC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
2 4 0.10
3 32 0.82
4 3 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:71156226 original size:30 final size:29
Alignment explanation
Indices: 71156173--71156242 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 29
71156163 TTTTGCTATG
* * *
71156173 TATGTATATGTTATGTGTATTTTATATAT
1 TATGTATATATTATCTGTATTTTACATAT
*
71156202 TATGTATATCATTATCTTTATTTTACATAT
1 TATGTATAT-ATTATCTGTATTTTACATAT
*
71156232 TACGTATATAT
1 TATGTATATAT
71156243 ATTAAATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 11 0.31
30 24 0.69
ACGTcount: A:0.30, C:0.06, G:0.09, T:0.56
Consensus pattern (29 bp):
TATGTATATATTATCTGTATTTTACATAT
Found at i:71168922 original size:79 final size:83
Alignment explanation
Indices: 71168826--71169022 Score: 249
Period size: 87 Copynumber: 2.4 Consensus size: 83
71168816 TCTCAGAAAT
71168826 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-ACACGCTGAGGTAATTTCAATTTC-TATC
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACACGCTGAGGTAATTTCAATTTCTTATC
71168889 -TTT-AATTTTCTAAAAG
66 ATTTCAATTTTCTAAAAG
* * * * *
71168905 CAACTCATATTGTGAGAGGTGAGTTGGGCCTCGGGTCTCACGCTGAGGTATTTTTAATTTCTGTT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACACGCTGAGGTAATTTCAATTTC--TT
* * * *
71168970 TTCAGTTTCTATTTTTTAAAAT
63 ATCA-TTTCAATTTTCTAAAAG
71168992 CAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 CAACTCATATTGCGAGAGGTGAGTTGAGCCT
71169023 TTTAATTTCT
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 33 0.33
81 21 0.21
84 3 0.03
86 3 0.03
87 39 0.39
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (83 bp):
CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACACGCTGAGGTAATTTCAATTTCTTATC
ATTTCAATTTTCTAAAAG
Found at i:71169045 original size:53 final size:54
Alignment explanation
Indices: 71168987--71169126 Score: 264
Period size: 53 Copynumber: 2.6 Consensus size: 54
71168977 TCTATTTTTT
71168987 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTT-TTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTCTTCA
*
71169040 AAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTCTTCA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTCTTCA
71169094 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
71169127 ACTTGGGTCT
Statistics
Matches: 84, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
53 48 0.57
54 36 0.43
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (54 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTCTTCA
Found at i:71169359 original size:54 final size:54
Alignment explanation
Indices: 71169287--71169423 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 54
71169277 TGTTTTTTTT
* *
71169287 AAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCTTAATTTCTGTTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCTTAATTTCTATTTTTCAA
* * *
71169341 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCTTAATTTCTATTTTTCAA
* *
71169395 ATATCAACTCATATTGCGAAAGGTGAGTT
1 AAATCAACTCATATTGCGAGAGGTGAGTT
71169424 GAACCTTGGC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (54 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCTTAATTTCTATTTTTCAA
Found at i:71169454 original size:300 final size:298
Alignment explanation
Indices: 71168900--71169455 Score: 796
Period size: 300 Copynumber: 1.9 Consensus size: 298
71168890 TTAATTTTCT
* * * * *
71168900 AAAAGCAACTCATATTGTGAGAGGTGAGTTGGGCCTCGGGTCTCACGCTGAGGTATTTTTAATTT
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GCTCACACGCTGAGGTAATTTTAATTT
** * * *
71168965 CTGTTTTCAGTTTCTATTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATT
65 CTGTTTTCAAATTCTATTTTTTAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCTTAATT
* *
71169030 TCTGTTTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTCTTCAA
130 TCTGTTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTCTTCAA
* * **
71169095 AAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTGGGTCTTATGCCGAGGTATTTTCAAATTC
195 AAATCAACTCATATTGCGAAAGGTGAGTTGAGACTTGGGTCTCATGCCGAGCCATTTTCAAATTC
71169160 TGCTGTCCAATTTCTGTCTTTAATTTCTGTTTTTCAAAA
260 TGCTGTCCAATTTCTGTCTTTAATTTCTGTTTTTCAAAA
* * *
71169199 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-CTGACATGCTGAGGTAATTTTAATTTC
1 AAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCTCACACGCTGAGGTAATTTTAATTTC
* * *
71169263 TATTTTTCAAATTCTGTTTTTTTTAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCTTAAT
66 T-GTTTTCAAATTCT-ATTTTTTAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCTTAAT
* *
71169328 TTCTGTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTTTTC
129 TTCTG-TTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTCTTC
*
71169393 AAATATCAACTCATATTGCGAAAGGTGAGTTGA-ACCTT-GG-CTCATGCGCTGAGCCATTTTCA
193 AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGA-CTTGGGTCTCATGC-C-GAGCCATTTTCA
71169455 A
255 A
71169456 TTTTTGTTTG
Statistics
Matches: 226, Mismatches: 25, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
297 23 0.10
298 16 0.07
299 87 0.38
300 100 0.44
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (298 bp):
AAAAGCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGCTCACACGCTGAGGTAATTTTAATTTC
TGTTTTCAAATTCTATTTTTTAAAATCAACTCATAATGCGAGAGGTGAGTTAAGCCTCTTAATTT
CTGTTTTCAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTTTTAATTTCTATTCTTCAAA
AATCAACTCATATTGCGAAAGGTGAGTTGAGACTTGGGTCTCATGCCGAGCCATTTTCAAATTCT
GCTGTCCAATTTCTGTCTTTAATTTCTGTTTTTCAAAA
Found at i:71169743 original size:79 final size:79
Alignment explanation
Indices: 71169636--71169783 Score: 278
Period size: 79 Copynumber: 1.9 Consensus size: 79
71169626 ATGTTTCAAA
*
71169636 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
71169701 TGTTTCTGCTTTTC
66 TGTTTCTGCTTTTC
*
71169715 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
71169780 TGTT
66 TGTT
71169784 CTTCCAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (79 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTCTGCTTTTC
Found at i:71169959 original size:54 final size:54
Alignment explanation
Indices: 71169877--71169987 Score: 204
Period size: 54 Copynumber: 2.1 Consensus size: 54
71169867 TCAATTTCTG
71169877 TTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGC
1 TTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGC
* *
71169931 TTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGC
71169985 TTT
1 TTT
71169988 GGCTCACGCG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (54 bp):
TTTTTAATTTATGTTTTTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGC
Found at i:71171881 original size:3 final size:3
Alignment explanation
Indices: 71171798--71171864 Score: 93
Period size: 3 Copynumber: 23.0 Consensus size: 3
71171788 AATATTCTTT
* * *
71171798 TTA TTT TTA -TA TTA TTA ATA TTA -TA CTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
71171844 TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA
71171865 GTATATACTC
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
2 4 0.07
3 53 0.93
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:71172306 original size:30 final size:29
Alignment explanation
Indices: 71172253--71172324 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 29
71172243 TTTTGCTATG
* * *
71172253 TATGTATATGTTATGTGTATTTTATATAT
1 TATGTATATATTATCTGTATTTTACATAT
*
71172282 TATGTATATCATTATCTTTATTTTACATAT
1 TATGTATAT-ATTATCTGTATTTTACATAT
*
71172312 TACGTATATATTA
1 TATGTATATATTA
71172325 AATATCGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 13 0.35
30 24 0.65
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.56
Consensus pattern (29 bp):
TATGTATATATTATCTGTATTTTACATAT
Found at i:71172377 original size:21 final size:20
Alignment explanation
Indices: 71172339--71172378 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
71172329 TCGTATTATT
*
71172339 CATATATTTTATTATATATG
1 CATATATTTTAATATATATG
*
71172359 CATATATCTTTAATGTATAT
1 CATATAT-TTTAATATATAT
71172379 ATATAAGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
CATATATTTTAATATATATG
Found at i:71182317 original size:15 final size:15
Alignment explanation
Indices: 71182297--71182326 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71182287 GAGTATGGTA
71182297 AAATATTAAAAAAAT
1 AAATATTAAAAAAAT
*
71182312 AAATATTTAAAAAAT
1 AAATATTAAAAAAAT
71182327 TACTAATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATATTAAAAAAAT
Found at i:71186780 original size:141 final size:140
Alignment explanation
Indices: 71186441--71187674 Score: 1477
Period size: 140 Copynumber: 9.0 Consensus size: 140
71186431 TACAACAAAA
* * *
71186441 TAGTCCTAAGACGACACTTTTGTGGCGACACTTTCCTAAGTGTTGGGATAGACTGGCCAATATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* * * * * *
71186506 GCTTTAGCCAACTATTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
71186571 TGGCTTTGTC
131 TGGCTTTGTC
* * *
71186581 TAGTCCTAAGGCGACACTTTTGGGGTGACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
** ** * * * *
71186646 GCTTTCACCAACTCTTTAAATAAAGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
*
71186711 TGGCTTTTGTG
131 TGGC-TTTGTC
*
71186722 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
71186787 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
71186852 TGGCTTTTGTC
131 TGGC-TTTGTC
* * * *
71186863 TAGTCCTAAGACGACATTTTTGGGGCGATACTTTCCTAAGTGTTGGGATAGACTTGCCAATATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* *
71186928 GCTTTGGCCAACTCTTTGCATAAAGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAACAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
71186993 TGGCTTTGTC
131 TGGCTTTGTC
*
71187003 CAGTCCTAAGACGACA-TGTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
1 TAGTCCTAAGACGACACT-TTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
* * *
71187067 TGCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACACTTGAATAAGAG
65 CGCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAG
71187132 TTGGCTTTGTC
130 TTGGCTTTGTC
* * * *
71187143 CAGTCCTAAGACGACATTTTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
71187208 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
71187273 TGGCTTTGTC
131 TGGCTTTGTC
* * * *
71187283 CAGTCCT-A-A-G--A----T-----GACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATAC
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
** * * * * * * * *
71187334 TTTTTGGTCAACTTTTTGTATAAGGGTTGGGATATGCATGCTTAAGGCAACGTTTAAATAAGAGT
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
*
71187399 CGGCTTTGTC
131 TGGCTTTGTC
* * * * * * * * *
71187409 GA-ACACTATGCCTACACATTTGGGTCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATA
1 TAGTC-CTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATA
* * * * * **
71187473 CACTTTGGCCAACTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAG
65 CGCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAG
* *
71187538 -TCG-ATT-T-
130 TTGGCTTTGTC
* * * * *
71187545 T-GTCC--A-A-G--AC-TAT--GCCAACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATAT
1 TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
* * * * * *
71187600 GCTTTGGCCAACTCTTTGTATAAGAGATG-GTATATGCATGCCTAAGGCAACACTTAAATAAGAG
66 GCTTTGGCCAACTCTTTGCATAAGGGTTGCG-ATATGTATGCCTAAGACAACGCTTAAATAAGAG
*
71187664 TTAGCTTTGTC
130 TTGGCTTTGTC
71187675 CAATAGTATG
Statistics
Matches: 975, Mismatches: 95, Indels: 58
0.86 0.08 0.05
Matches are distributed among these distances:
125 2 0.00
126 196 0.20
127 2 0.00
128 4 0.00
129 3 0.00
131 2 0.00
135 3 0.00
136 1 0.00
137 2 0.00
138 3 0.00
139 3 0.00
140 491 0.50
141 263 0.27
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (140 bp):
TAGTCCTAAGACGACACTTTTGGGGCGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATAC
GCTTTGGCCAACTCTTTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGT
TGGCTTTGTC
Found at i:71187404 original size:126 final size:126
Alignment explanation
Indices: 71187170--71187676 Score: 552
Period size: 126 Copynumber: 3.9 Consensus size: 126
71187160 TTTTGGGGCA
* *
71187170 ACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGGGT
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
* * * *
71187235 TGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTGTCCAGTCCTAAGATG
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGATG
* * * * *
71187296 ACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACT-TTTTGGTCAACTTTTTGTATAAGGG
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATA-TGCTTTGGCCAACTCTTTGTATAAGGG
* * *
71187360 TTGGGATATGCATGCTTAAGGCAACGTTTAAATAAGAGTCGGCTTTGTCGAACACTATGCCTACA
65 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC---CA--GT-CCTA-A
*
71187425 CATTTGGG
123 GA--T--G
**
71187433 TCAACACTTTCCTAAGTGTTGGGATAGACTTG-CAAACATACACTTTGGCCAACTCTTTGTATAA
1 ---ACACTTTCCTAAGTGTTGGGATAGACTTGTC-AACATATGCTTTGGCCAACTCTTTGTATAA
** ** * * **
71187497 GGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGATTTTGTCCAAG-ACTATGCC
62 GGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCC-AGTCCTAAGAT
*
71187561 A
126 G
* *
71187562 ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGAGA
1 ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
* * **
71187627 TGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTCCA
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCA
71187677 ATAGTATGTC
Statistics
Matches: 319, Mismatches: 43, Indels: 39
0.80 0.11 0.10
Matches are distributed among these distances:
125 1 0.00
126 199 0.62
127 2 0.01
129 2 0.01
131 1 0.00
132 4 0.01
133 2 0.01
134 3 0.01
135 1 0.00
137 2 0.01
138 1 0.00
139 1 0.00
140 100 0.31
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.32
Consensus pattern (126 bp):
ACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGGGT
TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAGTCCTAAGATG
Found at i:71187517 original size:266 final size:266
Alignment explanation
Indices: 71186466--71187676 Score: 1240
Period size: 266 Copynumber: 4.4 Consensus size: 266
71186456 ACTTTTGTGG
* * * * * *
71186466 CGACACTTTCCTAAGTGTTGGGATAGACTGGCCAATATACGCTTTAGCCAACTATTTGTATAAGG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGG
* * * *
71186531 GTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTCTAGTCCTAAGGCGAC
66 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAC
* ** * * * **
71186596 ACTTTTGGGGTGACACTTTCGTAAGTGTTGGGATAGACTTGCCAACATACGCTTTCACCAACTCT
131 ACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACTCT
** * * * * * * *
71186661 TTAAATAAAGGTTGGGATATGTATGCCTAAGGCAACGCTTGAATAAGAGTTGGCTTTTGTGTAGT
196 TTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGAC---T-T-T-GT
* *
71186726 CCTAAGACGACACTTTTGGGG
255 CC-AAGACTA-A-------GA
* *
71186747 CGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGG
* * * * * *
71186812 GTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTTGTCTAGTCCTAAGACGA
66 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGC-TTTGTCCAGACCTAAGACGA
** * * * * **
71186877 CATTTTTGGGGCGATACTTTCCTAAGTGTTGGGATAGACTTGCCAATATATGCTTTGGCCAACTC
130 CACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACTC
* * * * *
71186942 TTTGCATAAAGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAACAGTTGGCTTTGTCCAGT
195 TTTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGAC-TT-T---GT
* *
71187007 CCTAAGACGACATGTTTGGGG
255 CC-AAGACTA-A-------GA
* *
71187028 CGACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCTTTGCATAAGG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGG
* * * * *
71187093 GTTGCGATATGTATGCCTAAGACAACACTTGAATAAGAGTTGGCTTTGTCCAGTCCTAAGACGAC
66 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAC
** * **
71187158 ATTTTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCCAACATATGCTTTGGCCAACTCT
131 ACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACTCT
* * *
71187223 TTGCATAAGGGTTGCGATATGTATGCCTAAGACAACGCTTAAATAAGAGTTGGCTTTGTCC-AGT
196 TTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAAG-
*
71187287 CCTAAGA
260 ACTAAGA
* * * * * *
71187294 TGACATTTTCCTAAGTGTTGGGATAGACTTGTCGACATACT-TTTTGGTCAACTTTTTGTATAAG
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATA-TGCTTTGGCCAACTCTTTGTATAAG
* ** * * * * *
71187358 GGTTGGGATATGCATGCTTAAGGCAACGTTTAAATAAGAGTCGGCTTTGTCGA-ACACTATGCCT
65 GGTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGAC-CTAAGACG
*
71187422 ACACATTTGGGTCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACT
129 ACACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACT
* * * ** *
71187487 CTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACTTTTAAATAAGAGTCGATTTTGTCCAA
194 CTTTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAA
* *
71187552 GACTATGC
259 GACTAAGA
* *
71187560 CAACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGA
1 CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGG
* * *
71187625 GATGGTATATGCATGCCTAAGGCAACACTTAAATAAGAGTTAGCTTTGTCCA
66 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCA
71187677 ATAGTATGTC
Statistics
Matches: 830, Mismatches: 92, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
265 2 0.00
266 320 0.39
267 3 0.00
273 3 0.00
274 2 0.00
275 4 0.00
278 1 0.00
279 5 0.01
280 136 0.16
281 229 0.28
282 125 0.15
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.32
Consensus pattern (266 bp):
CGACACTTTCCTAAGTGTTGGGATAGACTTGTCAACATATGCTTTGGCCAACTCTTTGTATAAGG
GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTTGGCTTTGTCCAGACCTAAGACGAC
ACATTTGGGGCAACACTTTCCTAAGTGTTGGGATAGACTTGCAAACATACACTTTGGCCAACTCT
TTGCATAAGGGTTGCGATATGCATGCCTAAGACAACGCTTAAATAAGAGTCGACTTTGTCCAAGA
CTAAGA
Found at i:71187978 original size:7 final size:7
Alignment explanation
Indices: 71187968--71187998 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
71187958 GGGTTTAAGA
71187968 TTTGGGG
1 TTTGGGG
71187975 TTTGGGG
1 TTTGGGG
*
71187982 TTTAGGG
1 TTTGGGG
71187989 TTTGGGG
1 TTTGGGG
71187996 TTT
1 TTT
71187999 AGAGTCATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.03, C:0.00, G:0.48, T:0.48
Consensus pattern (7 bp):
TTTGGGG
Found at i:71187983 original size:21 final size:21
Alignment explanation
Indices: 71187958--71187998 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
71187948 TTTGGTTTTA
71187958 GGGTTTAAGATTTGGGGTTTG
1 GGGTTTAAGATTTGGGGTTTG
* *
71187979 GGGTTTAGGGTTTGGGGTTT
1 GGGTTTAAGATTTGGGGTTT
71187999 AGAGTCATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.00, G:0.46, T:0.44
Consensus pattern (21 bp):
GGGTTTAAGATTTGGGGTTTG
Found at i:71189031 original size:35 final size:35
Alignment explanation
Indices: 71188985--71189067 Score: 157
Period size: 35 Copynumber: 2.4 Consensus size: 35
71188975 TCTGCCCTAT
*
71188985 TCCAGCCACTGGTGCATCTGCCGTCGACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
71189020 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
1 TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
71189055 TCCAGCCACTGGT
1 TCCAGCCACTGGT
71189068 ATGTCACGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 47 1.00
ACGTcount: A:0.14, C:0.43, G:0.22, T:0.20
Consensus pattern (35 bp):
TCCAGCCACTGGTGCATCTGCCGTCCACCACCTGC
Found at i:71192413 original size:22 final size:22
Alignment explanation
Indices: 71192342--71192413 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
71192332 GTATATTTGA
71192342 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
71192364 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
71192389 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
71192411 GAT
1 GAT
71192414 GAATGTGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:71192493 original size:94 final size:94
Alignment explanation
Indices: 71192317--71192503 Score: 225
Period size: 94 Copynumber: 2.0 Consensus size: 94
71192307 GATTTCATGA
** * * * *
71192317 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCA
*
71192382 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGAGAAGGCCGAATGGCCAATGT
* * * *
71192411 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAAGA-GT
1 GATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAACGT-GAACATGC
* *
71192475 ATATATGTGGCGAA-GCCGAATGGCTAATG
65 ATATATGT-GAGAAGGCCGAATGGCCAATG
71192504 CGAAATGTGT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
94 71 0.91
95 7 0.09
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGAGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCA
TATATGTGAGAAGGCCGAATGGCCAATGT
Found at i:71192498 original size:47 final size:47
Alignment explanation
Indices: 71192317--71192463 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 47
71192307 GATTTCATGA
** * * *
71192317 GATGAATGTGAATGTGTATATTTGAGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
71192364 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
71192411 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
71192458 GATGAA
1 GATGAA
71192464 CGTGGAAGAG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:71194705 original size:13 final size:13
Alignment explanation
Indices: 71194687--71194711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71194677 ATAGATTGTG
71194687 TCTTAAAAATTTT
1 TCTTAAAAATTTT
71194700 TCTTAAAAATTT
1 TCTTAAAAATTT
71194712 AAAACATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TCTTAAAAATTTT
Found at i:71196538 original size:33 final size:33
Alignment explanation
Indices: 71196473--71196538 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
71196463 TATACACAAT
* * *
71196473 ATGGTATTTAAAAAATATATATATATGTATATA
1 ATGGTATTTAAAAAATATATACATAAGAATATA
*
71196506 ATGGTATTT-AAGAATATATACATAAGAAATATA
1 ATGGTATTTAAAAAATATATACATAAG-AATATA
71196539 TAACTAATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (33 bp):
ATGGTATTTAAAAAATATATACATAAGAATATA
Found at i:71196577 original size:39 final size:39
Alignment explanation
Indices: 71196491--71196577 Score: 104
Period size: 39 Copynumber: 2.2 Consensus size: 39
71196481 TAAAAAATAT
* * * *
71196491 ATATATATGTATATAATGGTATTTAAGAATATATACATA
1 ATATATATATATATAATGGCATTAAAAAATATATACATA
* *
71196530 AGAAATATATA-ACTAATGGCATTAAAAAATATATACATA
1 ATATATATATATA-TAATGGCATTAAAAAATATATACATA
71196569 ATATATATA
1 ATATATATA
71196578 AAATACCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 1 0.03
39 38 0.97
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.36
Consensus pattern (39 bp):
ATATATATATATATAATGGCATTAAAAAATATATACATA
Found at i:71197975 original size:30 final size:30
Alignment explanation
Indices: 71197939--71198000 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
71197929 TTTTGAAAAA
71197939 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
71197969 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
71197999 CA
1 CA
71198001 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:71198006 original size:84 final size:86
Alignment explanation
Indices: 71197900--71198057 Score: 266
Period size: 87 Copynumber: 1.8 Consensus size: 86
71197890 GACTGGAGGT
71197900 TCAACTCACCTCTCGCAATATGAGTTG-A-TTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
1 TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
71197963 CTCTCGCAGAAATTAAAAAGC
66 CTCTCGCAGAAATTAAAAAGC
* *
71197984 TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTAAAAGGCTTAACTCA
1 TCAACTCACCTCTCGCAATATGAGTTGAA-TTTTTTGAAAAACAGAAATTAAAAGACTCAACTCA
*
71198049 CCTCTCGCA
65 ACTCTCGCA
71198058 ACATGAGTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
84 27 0.40
85 1 0.01
87 40 0.59
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (86 bp):
TCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAACAGAAATTAAAAGACTCAACTCAA
CTCTCGCAGAAATTAAAAAGC
Found at i:71198057 original size:57 final size:55
Alignment explanation
Indices: 71197969--71198090 Score: 174
Period size: 57 Copynumber: 2.2 Consensus size: 55
71197959 TCAACTCTCG
*
71197969 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAA-AA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTG-A--TTTTTGAAACAA
* *
71198026 CAGAAATTAAAAGGCTTAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
1 CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
*
71198081 CAAAAATTAA
1 CAGAAATTAA
71198091 GAATACCTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
54 9 0.15
55 11 0.18
56 1 0.02
57 39 0.65
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (55 bp):
CAGAAATTAAAAAGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTGAAACAA
Found at i:71198456 original size:289 final size:288
Alignment explanation
Indices: 71197982--71198504 Score: 657
Period size: 288 Copynumber: 1.8 Consensus size: 288
71197972 AAATTAAAAA
*
71197982 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAACAGAAATTAAAAGGCTTAACT
1 GCTCAACTCACCTCTCGCAATATGAGCTGAA--TTTTTGAAAAACAGAAATTAAAAGGCTTAACT
*
71198047 CACCTCTCGCAACATGAGTTGATTTTTGAAACAACAAAAATTAAGAATACCTCAACGGGACCTAA
64 CACCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATTAAGAATACCTCAACGGGACCTAA
** * * * * *
71198112 GGCTTGACTCACTTCTCGCAGTTTGAGTCAAAATTTGAAACATAAACAAAAAATA-CTTCAGCGC
129 GGCTCAACTCACCTCTCGCAATATGAGTCAAAATTTAAAACACAAACAAAAAATACCTT-A--GC
* ** * *
71198176 GTGGCTTGAGGCTCGACTCACCTCTCGCAATATGAGCTGATTCTTTCAAAAACATAATAATGAAA
191 GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTCTTTCAAAAACATAATAATGAAA
71198241 ACAGAAATTGAAAATACCTCGGCGCGACCTGAG
256 ACAGAAATTGAAAATACCTCGGCGCGACCTGAG
*
71198274 GCTCAACTCACCTCTCGCAATATGAGCTG-A-TTTTGAAAAAGTAGAAATTAAAAGG-TTCAACT
1 GCTCAACTCACCTCTCGCAATATGAGCTGAATTTTTGAAAAA-CAGAAATTAAAAGGCTT-AACT
* * * * * * *
71198336 CACCTCTCGCAATATGAGTTGATTCTTGACA-AACATAAATTGAA-ATTACCTCATCGTGTCCTA
64 CACCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATT-AAGAATACCTCAACGGGACCTA
* **
71198399 AGGCTCAACTCACCTCTCGTAATATGAGTTGAAA-TTAAAACACAAA-AATTGAAAATACCTTAG
128 AGGCTCAACTCACCTCTCGCAATATGAGTCAAAATTTAAAACACAAACAA---AAAATACCTTAG
*
71198462 CGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT
190 CGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATT
71198505 TTGAAAAACC
Statistics
Matches: 198, Mismatches: 26, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
286 2 0.01
287 48 0.24
288 62 0.31
289 54 0.27
290 3 0.02
291 1 0.01
292 28 0.14
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.27
Consensus pattern (288 bp):
GCTCAACTCACCTCTCGCAATATGAGCTGAATTTTTGAAAAACAGAAATTAAAAGGCTTAACTCA
CCTCTCGCAACATGAGTTGATTCTTGAAACAACAAAAATTAAGAATACCTCAACGGGACCTAAGG
CTCAACTCACCTCTCGCAATATGAGTCAAAATTTAAAACACAAACAAAAAATACCTTAGCGTGCC
CCGAGGCTCAACTCACCTCTAGCAATATGAGCTGATTCTTTCAAAAACATAATAATGAAAACAGA
AATTGAAAATACCTCGGCGCGACCTGAG
Done.