Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 211 of 362
Found at i:71198483 original size:72 final size:73
Alignment explanation
Indices: 71198325--71198519 Score: 225
Period size: 72 Copynumber: 2.7 Consensus size: 73
71198315 TAGAAATTAA
* ** * * * *
71198325 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTCTTGACAAACATAAATTGAAATTACCTCAT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAG
* *
71198390 CGTGTCCT
66 CGTGCCCC
* *
71198398 AAGGCTCAACTCACCTCTCGTAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTTA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAA-ACAAAAATTGAAAATACCTCA
71198461 GCGTGCCCC
65 GCGTGCCCC
* * * *
71198470 GAGGCTCAACTCACCTCTAGCAATATGAGTTGAT-TTTGAAAAACCAAAAT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAAT
71198520 AAAAAGGCTT
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
71 3 0.03
72 65 0.63
73 35 0.34
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (73 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAAAACAAAAATTGAAAATACCTCAG
CGTGCCCC
Found at i:71206912 original size:12 final size:12
Alignment explanation
Indices: 71206890--71206925 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
71206880 TGGGATATGC
*
71206890 AATGAATGAATG
1 AATGCATGAATG
*
71206902 GATGCATGAATG
1 AATGCATGAATG
71206914 AATGCATGAATG
1 AATGCATGAATG
71206926 TCAGTCATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:71206912 original size:16 final size:17
Alignment explanation
Indices: 71206886--71206917 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71206876 AGTATGGGAT
71206886 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
71206903 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
71206918 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:71209406 original size:28 final size:27
Alignment explanation
Indices: 71209353--71209404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
71209343 GGTTTCTTGG
71209353 TTTTTTTTTTGGGAGGTTAGGTTTTTC
1 TTTTTTTTTTGGGAGGTTAGGTTTTTC
*
71209380 TTTTTTTTTTTGG-GGTTAGGTTTTT
1 TTTTTTTTTTGGGAGGTTAGGTTTTT
71209405 TTTGGGAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.06, C:0.02, G:0.25, T:0.67
Consensus pattern (27 bp):
TTTTTTTTTTGGGAGGTTAGGTTTTTC
Found at i:71219135 original size:221 final size:221
Alignment explanation
Indices: 71218714--71219327 Score: 553
Period size: 221 Copynumber: 2.8 Consensus size: 221
71218704 TTTATCCTAA
* * * * *
71218714 CTTTTTTAAGGTTGCCTTAGAC-AGGTTTATCCCAACTTTTTTT-AA-GTTGTCTTGGAAA-A-G
1 CTTTTTAAAGGTTGCCTTAGACAAGGTCTATCGCAACTTTTTTTAAAGGTTGCCTT--AAACATA
* * * ** * *
71218774 GTCTATCTCAA-CTTTTTT-AAGGTT--GTTGTAATGGGTCTATCCCAACATTTTTAACGTTGT-
64 GTCTATCCCAACCTTTTTTAAAGGTTACCTT-AAACAGATCTATCCCAACCTTTTTAACGTT-TC
* * ** * **
71218834 CTTAGATAGGTCAATCCCAACCTTTTCTAAAA-GTTGCTTTAGACAAGATCTATTCCAACCTTTT
127 CTTAGACAGGTCTATCCCAACCTTTT-TAAAAGGTTGCCCTAGACAAGGTCTACACCAACCTTTT
*
71218898 GGAGGTTACCTTAGACGAATCTATCCCAA-C
191 GAAGGTTACCTTAGACGAATCTATCCCAATC
* *
71218928 CTTTTT-AAGGTTGCTTTAGACAA-GTCTATCGTAACCTTTTTTT-AAGGTTGCCTTAAACA-AG
1 CTTTTTAAAGGTTGCCTTAGACAAGGTCTATCGCAA-CTTTTTTTAAAGGTTGCCTTAAACATAG
* *
71218989 TCTATCCCAACCCTTTTTT-AAGGTTGCCTTAAACAAGATCTATCCCAACCTTTTTTAAATGTTT
65 TCTATCCCAA-CCTTTTTTAAAGGTTACCTTAAAC-AGATCTATCCCAACC-TTTTT-AACGTTT
*
71219053 CCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTGCCCTAGACAAGGTCTACACCAACCTAT
126 CCTTAGAC-AGGTCTATCCCAACCTTTTTAAAAGGTTGCCCTAGACAAGGTCTACACCAACCT-T
*** *
71219118 TT-AAGGTTGTTTTAGACGATTCTATCCCAATC
189 TTGAAGGTTACCTTAGACGAATCTATCCCAATC
* * * * * * *
71219150 TTTTTTAAAGGTTGCCTTAGACAAGGTTTATTGCAACTTTTTTTAAATGTTGCCTTAGATATGGT
1 CTTTTTAAAGGTTGCCTTAGACAAGGTCTATCGCAACTTTTTTTAAAGGTTGCCTTAAACATAGT
* * * * * * * *
71219215 CTATCCCAACTTTTTTTAAAGGTTATCTTAGACTGGTATATCCCAACCTTTTTAAGGTTGCCTTA
66 CTATCCCAACCTTTTTTAAAGGTTACCTTAAACAGATCTATCCCAACCTTTTTAACGTTTCCTTA
* * * * *
71219280 GACAGGTCTATCACAACCTTTTTCAAAGGTTGGCCTTGACTAGGTCTA
131 GACAGGTCTATCCCAACCTTTTTAAAAGGTTGCCCTAGACAAGGTCTA
71219328 TCGCAACCTT
Statistics
Matches: 328, Mismatches: 51, Indels: 35
0.79 0.12 0.08
Matches are distributed among these distances:
213 25 0.08
214 28 0.09
215 7 0.02
216 13 0.04
217 2 0.01
218 14 0.04
219 6 0.02
220 16 0.05
221 103 0.31
222 22 0.07
223 29 0.09
224 40 0.12
225 23 0.07
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (221 bp):
CTTTTTAAAGGTTGCCTTAGACAAGGTCTATCGCAACTTTTTTTAAAGGTTGCCTTAAACATAGT
CTATCCCAACCTTTTTTAAAGGTTACCTTAAACAGATCTATCCCAACCTTTTTAACGTTTCCTTA
GACAGGTCTATCCCAACCTTTTTAAAAGGTTGCCCTAGACAAGGTCTACACCAACCTTTTGAAGG
TTACCTTAGACGAATCTATCCCAATC
Found at i:71219359 original size:38 final size:38
Alignment explanation
Indices: 71218669--71219349 Score: 532
Period size: 38 Copynumber: 18.7 Consensus size: 38
71218659 GAGACAAATA
* * *
71218669 TCTATCCCGACC-TTTTT-AAGTTTGCCTTAGAC-GGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* *
71218704 TTTATCCTAA-CTTTTTT-AAGGTTGCCTTAGAC-AGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * *
71218739 TTTATCCCAA-CTTTTTTTAA-GTTGTCTTGGAAAAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* *
71218775 TCTATCTCAA-CTTTTTT-AAGGTTG--TT-GTA-ATGGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAG-ACA-AGG
* * * *
71218809 TCTATCCCAA-CATTTTT-AACGTTGTCTTAGA-TAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * * * *
71218844 TCAATCCCAACCTTTTCTAAAAGTTGCTTTAGACAAGA
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** *
71218882 TCTATTCCAACC--TTTTGGAGGTTACCTTAGACGAA--
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGAC-AAGG
*
71218917 TCTATCCCAACC-TTTTT-AAGGTTGCTTTAGACAA-G
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
** * *
71218952 TCTATCGTAACCTTTTTTTAAGGTTGCCTTAAACAA-G
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* *
71218989 TCTATCCCAACCCTTTTTT-AAGGTTGCCTTAAACAAGA
1 TCTATCCCAA-CCTTTTTTAAAGGTTGCCTTAGACAAGG
* *
71219027 TCTATCCCAACCTTTTTTAAATGTTTCCTTAGACAAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * *
71219065 TCTATCCCAACATTTTTAAAAGGTTGCCCTAGACAAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** * *
71219103 TCTA-CACCAACC-TATTT-AAGGTTGTTTTAGACGA-T
1 TCTATC-CCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
*
71219138 TCTATCCCAATCTTTTTTAAAGGTTGCCTTAGACAAGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** * * * *
71219176 TTTATTGCAACTTTTTTTAAATGTTGCCTTAGATATGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* ** *
71219214 TCTATCCCAACTTTTTTTAAAGGTTATCTTAGAC-TGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
*
71219251 TATATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-AGG
1 TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
* * *
71219286 TCTATCACAACCTTTTTCAAAGGTTGGCCTT-GACTAGG
1 TCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACAAGG
*
71219324 TCTATCGCAACCTTTTTTAAAGGTTG
1 TCTATCCCAACCTTTTTTAAAGGTTG
71219350 GCATTGACTA
Statistics
Matches: 525, Mismatches: 92, Indels: 56
0.78 0.14 0.08
Matches are distributed among these distances:
33 2 0.00
34 29 0.06
35 133 0.25
36 82 0.16
37 104 0.20
38 175 0.33
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (38 bp):
TCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACAAGG
Found at i:71219372 original size:38 final size:38
Alignment explanation
Indices: 71219287--71219373 Score: 111
Period size: 38 Copynumber: 2.3 Consensus size: 38
71219277 TTAGACAGGT
* * * *
71219287 CTATCACAACCTTTTTCAAAGGTTGGCCTTGACTAGGT
1 CTATCGCAACCTTTTTCAAAGGTTGGCATTGACTAAGC
*
71219325 CTATCGCAACCTTTTTTAAAGGTTGGCATTGACTAAGC
1 CTATCGCAACCTTTTTCAAAGGTTGGCATTGACTAAGC
* *
71219363 CTTTTGCAACC
1 CTATCGCAACC
71219374 CTTCAATAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (38 bp):
CTATCGCAACCTTTTTCAAAGGTTGGCATTGACTAAGC
Found at i:71224981 original size:20 final size:20
Alignment explanation
Indices: 71224956--71224995 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
71224946 CGATTAATGT
71224956 GCTCATAATCCCTAATATGA
1 GCTCATAATCCCTAATATGA
71224976 GCTCATAATCCCTAATATGA
1 GCTCATAATCCCTAATATGA
71224996 CCAGGTATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (20 bp):
GCTCATAATCCCTAATATGA
Found at i:71231743 original size:18 final size:17
Alignment explanation
Indices: 71231707--71231746 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
71231697 TAATAAAAAT
71231707 ATAATTTTATCATTTTA
1 ATAATTTTATCATTTTA
71231724 ATAA-TTTAT-ATCTTT-
1 ATAATTTTATCAT-TTTA
71231739 ATAATTTT
1 ATAATTTT
71231747 TAAAAGATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.29
16 11 0.52
17 4 0.19
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAATTTTATCATTTTA
Found at i:71231917 original size:24 final size:25
Alignment explanation
Indices: 71231875--71231942 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 25
71231865 AGAAAATATT
71231875 TAATAATATAATT-TCTTAA-AAAAA
1 TAATAATATAATTAT-TTAATAAAAA
*
71231899 TAATAATATAATTATTTAATAAAGA
1 TAATAATATAATTATTTAATAAAAA
*
71231924 TACATATTATATATTATTT
1 TA-ATAATATA-ATTATTT
71231943 TTTTAATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
24 17 0.45
25 7 0.18
26 7 0.18
27 7 0.18
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (25 bp):
TAATAATATAATTATTTAATAAAAA
Found at i:71237389 original size:11 final size:10
Alignment explanation
Indices: 71237366--71237402 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
71237356 TTTATTAAAA
71237366 TTTAATATTT
1 TTTAATATTT
71237376 TTTAATATTT
1 TTTAATATTT
* *
71237386 TTTTATAATT
1 TTTAATATTT
71237396 TTTAATA
1 TTTAATA
71237403 AGAGCAGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTAATATTT
Found at i:71237402 original size:30 final size:29
Alignment explanation
Indices: 71237333--71237396 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
71237323 ATATAAAACT
* *
71237333 AAATTTAATTTTTTTTTTATATTTTTATTA
1 AAATTTAA-TATTTTTTAATATTTTTATTA
71237363 AAATTTAATATTTTTTAATATTTTT-TTA
1 AAATTTAATATTTTTTAATATTTTTATTA
*
71237391 TAATTT
1 AAATTT
71237397 TTAATAAGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 8 0.26
29 15 0.48
30 8 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (29 bp):
AAATTTAATATTTTTTAATATTTTTATTA
Found at i:71237506 original size:88 final size:90
Alignment explanation
Indices: 71237412--71237631 Score: 259
Period size: 88 Copynumber: 2.5 Consensus size: 90
71237402 AAGAGCAGCT
* * * * *
71237412 GCTTAATTGATTTTTTTGAAAAATTTTGAGGTATTTTTTTATACATTTTGAAAGTTCAAGTACCC
1 GCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGACTTTTTTATACATTTGGAAAGTTCAAGTACCC
71237477 AATTGAGTGAAAAA-AAAAGCA-G-G
66 AATTGAGTGAAAAAGAAAAG-AGGAG
* * * * * * *
71237500 GCTTAATTGCTTCTTTTGAAGAAGTTTAAGGGCCTTTTTTATGCATTTGGAAAGTTCAAGTGCTC
1 GCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGACTTTTTTATACATTTGGAAAGTTCAAGTACCC
71237565 AATTGAGTGAAAAAGAAAAGAGGAAAG
66 AATTGAGTGAAAAAGAAAAGAGG--AG
* *
71237592 GCTTAATTGCTTTTTCTGAAAAAGTTTGAGGG-GTTTTTTA
1 GCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGACTTTTTTA
71237632 CACCCTTAAG
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
88 68 0.62
89 6 0.05
91 7 0.06
92 29 0.26
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (90 bp):
GCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGACTTTTTTATACATTTGGAAAGTTCAAGTACCC
AATTGAGTGAAAAAGAAAAGAGGAG
Found at i:71243946 original size:19 final size:21
Alignment explanation
Indices: 71243916--71243955 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
71243906 GACTAAACTG
71243916 AAAACTTTAG-AAATTTTTAC
1 AAAACTTTAGAAAATTTTTAC
71243936 AAAAC-TTAGAAAATTTTTAC
1 AAAACTTTAGAAAATTTTTAC
71243956 CCTAAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAACTTTAGAAAATTTTTAC
Found at i:71248409 original size:43 final size:44
Alignment explanation
Indices: 71248362--71248524 Score: 145
Period size: 43 Copynumber: 3.8 Consensus size: 44
71248352 ACAGAGATGT
*
71248362 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATACTGA
* * * * * *
71248405 GATTACGTGTAAGACCATGTTTGGGACATTGGCAGCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATACTGA
* * * * * * *
71248448 GATTACTTGTAAGACCCTGTCTAGGAAAGTGGAATCGATA-TGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATACTGA
* * *
71248491 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
71248525 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 6 0.06
43 86 0.91
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATACTGA
Found at i:71255896 original size:21 final size:21
Alignment explanation
Indices: 71255860--71255902 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71255850 CGCCTGTATA
*
71255860 GATATGGGAGACGCCCATGTG
1 GATATGGGACACGCCCATGTG
* *
71255881 GATATGGGACATGCCCGTGTG
1 GATATGGGACACGCCCATGTG
71255902 G
1 G
71255903 GCAGGCCGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.19, G:0.40, T:0.21
Consensus pattern (21 bp):
GATATGGGACACGCCCATGTG
Found at i:71264183 original size:44 final size:44
Alignment explanation
Indices: 71264097--71264238 Score: 133
Period size: 46 Copynumber: 3.1 Consensus size: 44
71264087 ACACTAACTC
* * * * * *
71264097 TCACATATCTATGCCAATGCCATGTCCTAGATATGGTCTTACACTG
1 TCACATCTCGATGCCGATG-CATGTCCCAGACAT-ATCTTACACTG
*
71264143 TCACATCTC-ATAGCCGATGCATGTCCCAGACATATCTTACAGTGG
1 TCACATCTCGAT-GCCGATGCATGTCCCAGACATATCTTACACT-G
* * *
71264188 CTTACATCTCGATGCCGATGCATGTCCCAGATATGTCTTACACTG
1 -TCACATCTCGATGCCGATGCATGTCCCAGACATATCTTACACTG
*
71264233 ACACAT
1 TCACAT
71264239 AAATAACCTG
Statistics
Matches: 80, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
44 12 0.15
45 16 0.20
46 50 0.62
47 2 0.03
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (44 bp):
TCACATCTCGATGCCGATGCATGTCCCAGACATATCTTACACTG
Found at i:71267103 original size:46 final size:48
Alignment explanation
Indices: 71266950--71267403 Score: 302
Period size: 46 Copynumber: 9.7 Consensus size: 48
71266940 ATTTGTTTGT
* ** * *
71266950 GAGCTAGTGTAAGA-CATGTCTGGGACA-CGCATCGGCC-ACATTATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-GACGA
* * *
71266996 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
* * * *
71267044 GAGCTAGTGTAAGA-CATGTCTTGGACAT-TCATCAGCCTCGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACG-A
* * * *
71267091 -AGCTAGTGTAAGA-CATGCCTGGGAC-TTGCATCAG-CTATGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGACGA
* * * *
71267136 TAG-TCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGAGA-TA
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
* * **
71267182 TGAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGTATTGAGACGA
1 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
* * * ** * *
71267231 GAGCTAGTGTAAGA-CATGTCTCGAACAT-GTATCGGCCTCAAAACGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
* * * * *
71267277 GGGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGACGA
* * * *
71267323 TAG-TCAGTGTAAGACCATGTCTAGGACAT-GCATC-GACTTGAGA-TA
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
* * *
71267368 TGAGCCAGTGTAAGAACATGTTTGGGACATGGCATC
1 -GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
71267404 AGTACCTTAC
Statistics
Matches: 327, Mismatches: 59, Indels: 43
0.76 0.14 0.10
Matches are distributed among these distances:
45 8 0.02
46 154 0.47
47 111 0.34
48 52 0.16
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGACGA
Found at i:71267203 original size:140 final size:141
Alignment explanation
Indices: 71266950--71267248 Score: 356
Period size: 140 Copynumber: 2.1 Consensus size: 141
71266940 ATTTGTTTGT
* * *
71266950 GAGCTAGTGTAAGACATGTCTGGGACACGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGCCTGGGACACGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATG
* * * *
71267015 TCTGGGACATGGCATCGGCATTGAGAGGAGAGCTAGTGTAAGACATGTCTTGGACAT-TCATCAG
66 TCTGGGACATGGCATCGACATTGAGAGGAGAGCCAGTGTAAGACATGTCTGGGACATAGCATCAG
*
71267079 CCTCGAGACGTA
131 CATCGAGACG-A
** * * * *
71267091 -AGCTAGTGTAAGACATGCCTGGGACTTGCATCAGCTATGA-GATGATAGTCAGTGTAAGACCAT
1 GAGCTAGTGTAAGACATGCCTGGGACACGCATCAGCCA-CATGATGAGAGCCAGTGTAAGACCAT
* *
71267154 GTTTGGGACATGGCATCGAC-TTGAGA-TATGAGCCAGTGTAAGACCATGTCTGGGACATAGCAT
65 GTCTGGGACATGGCATCGACATTGAGAGGA-GAGCCAGTGTAAGA-CATGTCTGGGACATAGCAT
* * *
71267217 CGGTATTGAGACGA
128 CAGCATCGAGACGA
71267231 GAGCTAGTGTAAGACATG
1 GAGCTAGTGTAAGACATG
71267249 TCTCGAACAT
Statistics
Matches: 134, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
138 1 0.01
139 19 0.14
140 84 0.63
141 30 0.22
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (141 bp):
GAGCTAGTGTAAGACATGCCTGGGACACGCATCAGCCACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGACATTGAGAGGAGAGCCAGTGTAAGACATGTCTGGGACATAGCATCAG
CATCGAGACGA
Found at i:71267288 original size:187 final size:186
Alignment explanation
Indices: 71266996--71267403 Score: 611
Period size: 187 Copynumber: 2.2 Consensus size: 186
71266986 CACATTATGA
*
71266996 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAGGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACAT
* * * * * * *
71267061 GTCTTGGACATTCATCAGCCTCGAGACGTAAGCTAGTGTAAGACATGCCTGGGACTTGCATCAGC
66 GTCTCGAACATTCATCAGCCTCAAAACGTAAGCCAGTGTAAGACATGCCTAGGACATGCATCAGC
* * *
71267126 TATGAGATGATAGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATAT
131 TACGAGATGATAGTCAGTGTAAGACCATGTCTAGGACAT-GCATCGACTTGAGATAT
* *
71267183 GAGCCAGTGTAAGACCATGTCTGGGACATAGCATCGGTATTGAGACGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACAT
* ** * *
71267248 GTCTCGAACATGT-ATCGGCCTCAAAACGTGGGCCAGTGTAAGACATGTCTAGGACATGCATCGG
66 GTCTCGAACAT-TCATCAGCCTCAAAACGTAAGCCAGTGTAAGACATGCCTAGGACATGCATCAG
71267312 CTACGAGATGATAGTCAGTGTAAGACCATGTCTAGGACATGCATCGACTTGAGATAT
130 CTACGAGATGATAGTCAGTGTAAGACCATGTCTAGGACATGCATCGACTTGAGATAT
* *
71267369 GAGCCAGTGTAAGAACATGTTTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
71267404 AGTACCTTAC
Statistics
Matches: 199, Mismatches: 21, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
186 49 0.25
187 149 0.75
188 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (186 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACAT
GTCTCGAACATTCATCAGCCTCAAAACGTAAGCCAGTGTAAGACATGCCTAGGACATGCATCAGC
TACGAGATGATAGTCAGTGTAAGACCATGTCTAGGACATGCATCGACTTGAGATAT
Found at i:71272791 original size:47 final size:47
Alignment explanation
Indices: 71272613--71273019 Score: 379
Period size: 47 Copynumber: 8.7 Consensus size: 47
71272603 TTTGTGAGCT
* * *
71272613 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGA-GAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TTGAGATGATAAGCC
* * *
71272661 AGTGTAAGACATGTCTTGGACAT-GCATCGGGCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GGCTTGAGATGATAAGCC
* *
71272707 AGTGTAAGACATGCCTGGGACAT-GCATCGGCTATGAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCT-TGAGATGATAAGCC
* * *
71272753 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCTTGAGATGATAAGCC
* * * * * * *
71272800 AGTGTAAGACCGTGTTTGGGACATGGCCTCGGCATTAAGACGA-GAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TTGAGATGATAAGCC
* * *
71272848 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGA-CATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-CTTGAGATGATAAGCC
* * * *
71272894 AGTGTAGGACATGTCTGTGACAT-GCATCGACTATGAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCT-TGAGATGATAAGCC
** *
71272940 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGAT-ATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCTTGAGATGATAAGCC
71272987 AGTGTAAGATCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
71273020 ACCTTACCCA
Statistics
Matches: 297, Mismatches: 46, Indels: 33
0.79 0.12 0.09
Matches are distributed among these distances:
45 7 0.02
46 114 0.38
47 132 0.44
48 43 0.14
49 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCTTGAGATGATAAGCC
Found at i:71272909 original size:140 final size:142
Alignment explanation
Indices: 71272613--71273019 Score: 444
Period size: 140 Copynumber: 2.9 Consensus size: 142
71272603 TTTGTGAGCT
* * * *
71272613 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGA-GAGCTAGTGTAAGA-CATGTC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGAC-TTGAGATGATGAGCCAGTGTAAGACCATGT-
* *
71272676 TT-GGACAT-GCATCGGGCTCGAGACGTA-AGCCAGTGTAAGACATGCCTGGGACATGCATCGG-
64 TTGGGACATGGCATC-GGCTTGAGACG-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
* * *
71272737 CTATGAGATGATAGTC
127 CTACGAGATCATAGCC
*
71272753 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGAT-ATGAGCCAGTGTAAGACCGTGTTT
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATGATGAGCCAGTGTAAGACCATGTTT
* * * *
71272817 GGGACATGGCCTCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCT-
66 GGGACATGGCATCGGC-TTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTA
71272881 CGAGA-CATAAGCC
130 CGAGATCAT-AGCC
* * * *
71272894 AGTGTAGGA-CATGTCTGTGACAT-GCATCGACTATGAGATGAT-AGTCAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGAGACATGGCATCGACT-TGAGATGATGAGCCAGTGTAAGACCATGTT
** *
71272956 TGGGACATGGCATCAACTTGAGA-TATGAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGC
65 TGGGACATGGCATCGGCTTGAGACGA-GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
71273020 ACCTTACCCA
Statistics
Matches: 228, Mismatches: 26, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
138 2 0.01
139 48 0.21
140 110 0.48
141 66 0.29
142 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (142 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATGATGAGCCAGTGTAAGACCATGTTT
GGGACATGGCATCGGCTTGAGACGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAC
GAGATCATAGCC
Found at i:71272930 original size:187 final size:187
Alignment explanation
Indices: 71272607--71273020 Score: 693
Period size: 187 Copynumber: 2.2 Consensus size: 187
71272597 CATTTGTTTG
* *
71272607 TGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGATGAGAGCTAGTGTAAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACA
* * * *
71272672 TGTCTTGGACATGCATCGGGCTCGAGACGTAAGCCAGTGTAAGACATGCCTGGGACATGCATCGG
66 TGTCTAGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACATGCCTGGGACATGCATCGA
*
71272737 CTATGAGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGATA
131 CTATGAGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGAGATA
* * *
71272794 TGAGCCAGTGTAAGACCGTGTTTGGGACATGGCCTCGGCATTAAGACGAGAGCTAGTGTAAGACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACA
* * *
71272859 TGTCTAGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAGGACATGTCTGTGACATGCATCGA
66 TGTCTAGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACATGCCTGGGACATGCATCGA
*
71272924 CTATGAGATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGATA
131 CTATGAGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGAGATA
*
71272981 TGAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
71273021 CCTTACCCAC
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
187 209 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (187 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACA
TGTCTAGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACATGCCTGGGACATGCATCGA
CTATGAGATGATAGTCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGAGATA
Found at i:71288393 original size:44 final size:44
Alignment explanation
Indices: 71288294--71288420 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 44
71288284 CGTACAATGA
* *
71288294 CAACGTCCCAGACATGGTCTTACATGT-AATC-AAATATCGATGC
1 CAACGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGC
* * *
71288337 C-ACTATCTCAGACAGGGTCTTACACGTAAATCTCAAATCGATGC
1 CAAC-GTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGC
* *
71288381 CAACGTCCCAGACATGGTCTTACAC-AAAATCTCATATCGA
1 CAACGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGA
71288421 AATCCTATGT
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 33 0.47
44 31 0.44
45 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (44 bp):
CAACGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATGC
Found at i:71301339 original size:30 final size:30
Alignment explanation
Indices: 71301303--71301363 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
71301293 TTCCCGAGCC
*
71301303 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
71301333 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
71301363 T
1 T
71301364 GTATTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:71301940 original size:93 final size:93
Alignment explanation
Indices: 71301781--71301951 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
71301771 GGATGGTTGA
* * *
71301781 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTGTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
71301846 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71301874 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
71301939 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71301952 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71301953 original size:46 final size:46
Alignment explanation
Indices: 71301785--71301956 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
71301775 GGTTGAGCAT
* * *
71301785 CCGAACTCGTTGAGTTGAGTCCGAGTTCATTTGTGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
71301831 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
71301876 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
71301924 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71301957 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 2 0.02
46 60 0.56
47 28 0.26
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:71317282 original size:28 final size:29
Alignment explanation
Indices: 71317250--71317304 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
71317240 TTAATACAAA
*
71317250 CTTTGCAAAATTACA-TTTTTCCCCTAAT
1 CTTTGCAAAATTACACTTTTGCCCCTAAT
*
71317278 CTTTGCATAATTACACTTTTGCCCCTA
1 CTTTGCAAAATTACACTTTTGCCCCTA
71317305 GGCTCGGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.25, C:0.27, G:0.05, T:0.42
Consensus pattern (29 bp):
CTTTGCAAAATTACACTTTTGCCCCTAAT
Found at i:71318613 original size:15 final size:15
Alignment explanation
Indices: 71318557--71318621 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
71318547 TAAAGATAAC
*
71318557 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71318571 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
71318586 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
71318601 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
71318616 AAGAAA
1 AAGAAA
71318622 CCTAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71318623 original size:30 final size:30
Alignment explanation
Indices: 71318557--71318623 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
71318547 TAAAGATAAC
*
71318557 AAGAAAACCGAATAAAGAAATCCAAGATAG
1 AAGAAACCCGAATAAAGAAATCCAAGATAG
71318587 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCC-GAATAAAGAAATCCAAG-ATAG
71318616 AAGAAACC
1 AAGAAACC
71318624 TAAGATACGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.61, C:0.16, G:0.13, T:0.09
Consensus pattern (30 bp):
AAGAAACCCGAATAAAGAAATCCAAGATAG
Found at i:71321682 original size:49 final size:49
Alignment explanation
Indices: 71321640--71321871 Score: 275
Period size: 49 Copynumber: 4.7 Consensus size: 49
71321630 CTGGTATGCA
* *
71321640 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* *
71321689 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGCACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
* * ** **
71321738 TAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCTGGTACACG
* * * * ** *
71321788 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCTGGTACACG
*
71321839 TAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
71321872 TCACAATAGA
Statistics
Matches: 155, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
49 77 0.50
50 41 0.26
51 36 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACG
Found at i:71321810 original size:99 final size:100
Alignment explanation
Indices: 71321638--71321864 Score: 287
Period size: 99 Copynumber: 2.3 Consensus size: 100
71321628 ATCTGGTATG
* * * ** **
71321638 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCAACCAACCATCTAATACACGTAGTAGCCTGCACT
*
71321703 TAGTACTACACATGTGA-C-CAATTATCCGGCACA
66 TAGTACTACACACGTGATCACAATTATCCGGCACA
* *
71321736 CGTAGTAGCCTGCACTTAGTACTACACACGTAACCTAACCATCTAATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCAACC-AACCATCTAATACACGTAGTAGCCTGCAC
* * * * **
71321801 TTAGTACTACACACGTGATCACAGTTTTCGGGTATG
65 TTAGTACTACACACGTGATCACAATTATCCGGCACA
71321837 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
71321865 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
98 30 0.28
99 42 0.39
100 1 0.01
101 36 0.33
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCAACCAACCATCTAATACACGTAGTAGCCTGCACT
TAGTACTACACACGTGATCACAATTATCCGGCACA
Found at i:71327423 original size:19 final size:19
Alignment explanation
Indices: 71327396--71327437 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
71327386 CGGGTAAGGG
* *
71327396 ACACGGGCGTGTCCCAAGC
1 ACACAGGCGTGTCCCAAAC
71327415 ACACAGGCGTGTCCCAAAC
1 ACACAGGCGTGTCCCAAAC
71327434 ACAC
1 ACAC
71327438 GGGCATGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.38, G:0.24, T:0.10
Consensus pattern (19 bp):
ACACAGGCGTGTCCCAAAC
Found at i:71358788 original size:47 final size:48
Alignment explanation
Indices: 71358670--71358798 Score: 165
Period size: 47 Copynumber: 2.7 Consensus size: 48
71358660 GTTATGGGAA
* *
71358670 CTAGTGTAAGACCATGTCTAGGACATGGCATTGATACGGATATGTGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGATA-GGA-ATGTGAGAG
* *
71358720 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TG-ATGT-ACGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGA-TAGGAATGTGA-GAG
71358767 CTAGTGTAAGACCATGTCTGGGACATGGCATC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC
71358799 CACACTCTAC
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
46 1 0.01
47 38 0.53
49 1 0.01
50 31 0.43
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGATAGGAATGTGAGAG
Found at i:71369221 original size:29 final size:29
Alignment explanation
Indices: 71369179--71369236 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
71369169 ACCGTATGAG
71369179 ATTACCGAGAGAGTAGGGCCAGTTGCCTA
1 ATTACCGAGAGAGTAGGGCCAGTTGCCTA
*
71369208 ATTACCGAGAGAGTAGGGCTAGTTGCCTA
1 ATTACCGAGAGAGTAGGGCCAGTTGCCTA
71369237 TCGGTTAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (29 bp):
ATTACCGAGAGAGTAGGGCCAGTTGCCTA
Found at i:71378813 original size:35 final size:35
Alignment explanation
Indices: 71378769--71378938 Score: 241
Period size: 35 Copynumber: 4.9 Consensus size: 35
71378759 TTATCTGGCA
*
71378769 TGTTTCGGTTGGATTAGCTCTTATGAGCATTGGTG
1 TGTTACGGTTGGATTAGCTCTTATGAGCATTGGTG
*
71378804 TGTTACGGTTGGATTAGTTCTTATGAGCATTGGTG
1 TGTTACGGTTGGATTAGCTCTTATGAGCATTGGTG
*
71378839 TGTTACGGTTGGATTAGCTCTTATGAGAATTGGTG
1 TGTTACGGTTGGATTAGCTCTTATGAGCATTGGTG
* * * * **
71378874 TGTTATGGTTGGATTATCTTTTGTGAGCATTGGCA
1 TGTTACGGTTGGATTAGCTCTTATGAGCATTGGTG
* *
71378909 TGTTTCGGTTGGATTATCTCTTATGAGCAT
1 TGTTACGGTTGGATTAGCTCTTATGAGCAT
71378939 CATCGTGTTA
Statistics
Matches: 120, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 120 1.00
ACGTcount: A:0.17, C:0.10, G:0.29, T:0.44
Consensus pattern (35 bp):
TGTTACGGTTGGATTAGCTCTTATGAGCATTGGTG
Found at i:71378947 original size:70 final size:70
Alignment explanation
Indices: 71378764--71378956 Score: 264
Period size: 70 Copynumber: 2.8 Consensus size: 70
71378754 ACTCTTTATC
*
71378764 TGGCATGTTTCGGTTGGATTAGCTCTTATGAGCATTGGTGTGTTACGGTTGGATTAGTTCTTATG
1 TGGCATGTTTCGGTTGGATTAGCTCTTATGAGCATTGGTGTGTTATGGTTGGATTAGTTCTTATG
71378829 AGCAT
66 AGCAT
** * * * *
71378834 TGGTGTGTTACGGTTGGATTAGCTCTTATGAGAATTGGTGTGTTATGGTTGGATTA-TCTTTTGT
1 TGGCATGTTTCGGTTGGATTAGCTCTTATGAGCATTGGTGTGTTATGGTTGGATTAGT-TCTTAT
71378898 GAGCAT
65 GAGCAT
* **
71378904 TGGCATGTTTCGGTTGGATTATCTCTTATGAGCA-TCATCGTGTTATGGTTGGA
1 TGGCATGTTTCGGTTGGATTAGCTCTTATGAGCATTGGT-GTGTTATGGTTGGA
71378957 CTGACCATAT
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
69 3 0.03
70 104 0.97
ACGTcount: A:0.17, C:0.10, G:0.30, T:0.42
Consensus pattern (70 bp):
TGGCATGTTTCGGTTGGATTAGCTCTTATGAGCATTGGTGTGTTATGGTTGGATTAGTTCTTATG
AGCAT
Found at i:71386357 original size:46 final size:45
Alignment explanation
Indices: 71386290--71386461 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
71386280 TGTAACCCGC
* * *
71386290 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
* *
71386336 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * *
71386382 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
71386429 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
71386462 TGGATGCCCA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 59 0.57
47 31 0.30
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:71386456 original size:93 final size:93
Alignment explanation
Indices: 71386297--71386469 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
71386287 CGCCCATAAG
* *
71386297 CGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71386362 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
*
71386390 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
71386454 AACGAGTTTGGATGCC
65 AACGAGTTCGGATGCC
71386470 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:71391283 original size:14 final size:14
Alignment explanation
Indices: 71391262--71391294 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
71391252 CATTTAGGTT
71391262 AATT-CATTTGTGA
1 AATTGCATTTGTGA
71391275 AATTGCATTTGTGA
1 AATTGCATTTGTGA
71391289 AATTGC
1 AATTGC
71391295 TGTTAAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.42
Consensus pattern (14 bp):
AATTGCATTTGTGA
Found at i:71398780 original size:19 final size:19
Alignment explanation
Indices: 71398756--71398795 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
71398746 CTAAAACCAT
*
71398756 TTCA-TTGCATTTAGGTTAA
1 TTCATTTGCATTGA-GTTAA
71398775 TTCATTTGCATTGAGTTAA
1 TTCATTTGCATTGAGTTAA
71398794 TT
1 TT
71398796 AAATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (19 bp):
TTCATTTGCATTGAGTTAA
Found at i:71415234 original size:44 final size:44
Alignment explanation
Indices: 71415160--71415314 Score: 238
Period size: 44 Copynumber: 3.5 Consensus size: 44
71415150 GGCCAATCTT
* * * *
71415160 GCAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATCAAAGTTA
1 GCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATA
*
71415204 GCAGATTTGGCGTCTCTATTTTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATA
*
71415248 GCAGATTTGGTGTCTCTATATTGACAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATA
* *
71415292 GCAGATTTGGCATCTCTGTATTG
1 GCAGATTTGGCGTCTCTATATTG
71415315 GCGATACTCG
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 101 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (44 bp):
GCAGATTTGGCGTCTCTATATTGACAGAGAGCAGATCGAAGATA
Found at i:71420692 original size:30 final size:30
Alignment explanation
Indices: 71420658--71420719 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
71420648 GTTCTTAACT
*
71420658 TAAACTTTTGCAAAATTACAATTTTGCCCC
1 TAAACTATTGCAAAATTACAATTTTGCCCC
* * *
71420688 TAAACTATTGCATATTTACACTTTTGCCCC
1 TAAACTATTGCAAAATTACAATTTTGCCCC
71420718 TA
1 TA
71420720 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (30 bp):
TAAACTATTGCAAAATTACAATTTTGCCCC
Found at i:71427499 original size:27 final size:27
Alignment explanation
Indices: 71427472--71427695 Score: 143
Period size: 27 Copynumber: 8.3 Consensus size: 27
71427462 CAAAATAGTC
* * * *
71427472 ATTTTACCCTACAGGGGTATGTCGGTC
1 ATTTTACACTACAAGGGTATTTCGGTA
* *
71427499 ATTTTACACTACAATGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTCGGTA
*
71427526 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGGTA
* *** *
71427553 ATTTTACA-AATTGGGAGTATTTCGATA
1 ATTTTACACTACAAGG-GTATTTCGGTA
* * * *
71427580 ATTCTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
* * * *
71427607 ATTTCACA-AACTAAGGGTATTTTGATA
1 ATTTTACACTAC-AAGGGTATTTCGGTA
* * *
71427634 ATTTTACA-AATTAAGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
* *
71427661 ATTTTACA-AATCAAGGGTATTTTGGTA
1 ATTTTACACTA-CAAGGGTATTTCGGTA
71427688 ATTTTACA
1 ATTTTACA
71427696 AATCGGGGGT
Statistics
Matches: 166, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.02
27 160 0.96
28 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGGTA
Found at i:71427696 original size:27 final size:27
Alignment explanation
Indices: 71427514--71427772 Score: 249
Period size: 27 Copynumber: 9.6 Consensus size: 27
71427504 ACACTACAAT
* * *
71427514 GGTATTTTGGTAATTTTAC-ACTACAAG
1 GGTATTTCGATAATTTTACAAAT-CAAG
**
71427541 GGTATTTCGATAATTTTACAAAT-TGG
1 GGTATTTCGATAATTTTACAAATCAAG
* *
71427567 GAGTATTTCGATAATTCTACAAATCGAG
1 G-GTATTTCGATAATTTTACAAATCAAG
*
71427595 GGTATTTCGATAATTTCACAAA-CTAAG
1 GGTATTTCGATAATTTTACAAATC-AAG
* *
71427622 GGTATTTTGATAATTTTACAAATTAAG
1 GGTATTTCGATAATTTTACAAATCAAG
71427649 GGTATTTCGATAATTTTACAAATCAAG
1 GGTATTTCGATAATTTTACAAATCAAG
* * **
71427676 GGTATTTTGGTAATTTTACAAATCGGG
1 GGTATTTCGATAATTTTACAAATCAAG
* * * * *
71427703 GGTACTTCGGTAGTTTTCCAAATCGAG
1 GGTATTTCGATAATTTTACAAATCAAG
**
71427730 GGTATTTC-AGTAATTTTACAAA-CCGG
1 GGTATTTCGA-TAATTTTACAAATCAAG
71427756 AGGTATTTCGATAATTT
1 -GGTATTTCGATAATTT
71427773 CTCTTTATTA
Statistics
Matches: 193, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.03
27 183 0.95
28 5 0.03
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCAAG
Found at i:71428133 original size:28 final size:28
Alignment explanation
Indices: 71428091--71428152 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
71428081 GCCCCTTTAA
* *
71428091 GCCCAATCTCGTTCACATGGCCCATCAG
1 GCCCAATCACATTCACATGGCCCATCAG
* *
71428119 GCCCAATCACATTCATATGGCCCATCAT
1 GCCCAATCACATTCACATGGCCCATCAG
71428147 GCCCAA
1 GCCCAA
71428153 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.39, G:0.15, T:0.21
Consensus pattern (28 bp):
GCCCAATCACATTCACATGGCCCATCAG
Found at i:71431440 original size:21 final size:21
Alignment explanation
Indices: 71431416--71431456 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71431406 TAAAATATTT
71431416 TTGAAGGTGTCTCC-ATGGAAC
1 TTGAAGGTGTC-CCAATGGAAC
*
71431437 TTGAGGGTGTCCCAATGGAA
1 TTGAAGGTGTCCCAATGGAA
71431457 AAAGGTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (21 bp):
TTGAAGGTGTCCCAATGGAAC
Found at i:71443866 original size:15 final size:15
Alignment explanation
Indices: 71443826--71443876 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
71443816 CATTTGTTGT
*
71443826 TTTGTTTTGCTCT-A
1 TTTGTTTTGTTCTAA
* *
71443840 TTCTATTCTGTTCTAA
1 TT-TGTTTTGTTCTAA
*
71443856 TTTGTTTTGTTCTAT
1 TTTGTTTTGTTCTAA
71443871 TTTGTT
1 TTTGTT
71443877 GTACTACCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
14 2 0.07
15 24 0.83
16 3 0.10
ACGTcount: A:0.10, C:0.12, G:0.12, T:0.67
Consensus pattern (15 bp):
TTTGTTTTGTTCTAA
Found at i:71447238 original size:47 final size:47
Alignment explanation
Indices: 71447174--71447718 Score: 903
Period size: 47 Copynumber: 11.6 Consensus size: 47
71447164 TATTTGAATA
* *
71447174 AATGCGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71447221 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71447268 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71447317 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71447364 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71447411 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71447458 AATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
71447505 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
71447552 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71447599 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
71447646 AATGTG-AAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
71447692 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
71447719 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 42 0.09
47 387 0.81
49 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:71453394 original size:19 final size:19
Alignment explanation
Indices: 71453367--71453405 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71453357 GAGGGAGAAT
71453367 GATTAGGCTG-TTGTGTTGA
1 GATTAGGCTGCTT-TGTTGA
*
71453386 GATTGGGCTGCTTTGTTGA
1 GATTAGGCTGCTTTGTTGA
71453405 G
1 G
71453406 GAGCCCGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.13, C:0.08, G:0.38, T:0.41
Consensus pattern (19 bp):
GATTAGGCTGCTTTGTTGA
Found at i:71460726 original size:40 final size:41
Alignment explanation
Indices: 71460679--71460864 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
71460669 CTCGCACAAG
* * * * * *
71460679 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
71460719 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
71460759 GCCTTC-GGATCTTAGTCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
71460800 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
71460841 GCCTTCGAGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
71460865 CATTCGAGTA
Statistics
Matches: 134, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.02
40 60 0.45
41 68 0.51
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:71460815 original size:81 final size:81
Alignment explanation
Indices: 71460679--71460864 Score: 268
Period size: 81 Copynumber: 2.3 Consensus size: 81
71460669 CTCGCACAAG
* * * * *
71460679 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATA
*
71460744 GTCGC-TAGCACAAAT
66 GTCGCTTAGCACAAAA
* *
71460759 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGATCTTAGCCCGGATATAGTCAC-TAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
71460824 AGTCGCTTAGCACAAAA
65 AGTCGCTTAGCACAAAA
71460841 GCCTTCGAGA-CTTAGCCCGGATAT
1 GCCTTCG-GATCTTAGCCCGGATAT
71460865 CATTCGAGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
80 25 0.27
81 38 0.40
82 29 0.31
83 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (81 bp):
GCCTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATA
GTCGCTTAGCACAAAA
Found at i:71469182 original size:21 final size:21
Alignment explanation
Indices: 71469141--71469182 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71469131 AAACATTATA
*
71469141 TTTTTATTTTCTATTCGTATT
1 TTTTTATTTTCTATTCATATT
71469162 TTTTTATTTTTCTATT-ATATT
1 TTTTTA-TTTTCTATTCATATT
71469183 ACTATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTATTTTCTATTCATATT
Found at i:71469779 original size:29 final size:28
Alignment explanation
Indices: 71469733--71469805 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
71469723 GGTGTCGATG
71469733 ATTTATG-A-AAATTAAATC-AATTCAAA
1 ATTTATGTATAAATTAAATCAAATT-AAA
*
71469759 ATCTTATGTATAAATTTAATCAAAATTAAA
1 AT-TTATGTATAAATTAAATC-AAATTAAA
71469789 ATTTATGTATAATATTA
1 ATTTATGTATAA-ATTA
71469806 CCTATTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 2 0.05
27 5 0.13
28 1 0.03
29 19 0.49
30 8 0.21
31 4 0.10
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41
Consensus pattern (28 bp):
ATTTATGTATAAATTAAATCAAATTAAA
Found at i:71470719 original size:3 final size:3
Alignment explanation
Indices: 71470711--71470738 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
71470701 AAACATGCCT
71470711 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
71470739 ATATATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:71470775 original size:159 final size:158
Alignment explanation
Indices: 71470583--71470885 Score: 516
Period size: 159 Copynumber: 1.9 Consensus size: 158
71470573 CAAGAGAAGA
*
71470583 ATATATATTATTAAAGCTTACAAGGAATCGGTTGCTCAATCTCCCTCAAACGCTTCCAGCAATAT
1 ATATATATCATTAAAGCTTACAAGGAATCGGTTGCTCAATCTCCCTCAAACGCTTCCAGCAATAT
* *
71470648 GCTACACACTACTCCCCAGCAGTACTGCTGGAAGGTTTGGAGGAGAATGAACAAAACATGCCTTG
66 GCTACACACTACCCCCCAGCAGCACTGCTGGAAGGTTTGGAGGAGAATGAACAAAACATGCCTTG
71470713 ATGATGATGATGATGATGATGATGATAT
131 ATGATGATGATGATGATGATGATGATAT
* * *
71470741 ATATATATACATTGAAGCTTACAAGGAATTGGTTGCTCAGTCTCCCTCAAACGCTTCCAGCAATA
1 ATATATAT-CATTAAAGCTTACAAGGAATCGGTTGCTCAATCTCCCTCAAACGCTTCCAGCAATA
* * *
71470806 TTCTACACACTACCCCCCAGCAGCACTGTTGGAAGGTTTGGAGGAGAGTGAACAAAACATGCCTT
65 TGCTACACACTACCCCCCAGCAGCACTGCTGGAAGGTTTGGAGGAGAATGAACAAAACATGCCTT
71470871 GATGATGATGATGAT
130 GATGATGATGATGAT
71470886 ATATATCGCG
Statistics
Matches: 135, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
158 8 0.06
159 127 0.94
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (158 bp):
ATATATATCATTAAAGCTTACAAGGAATCGGTTGCTCAATCTCCCTCAAACGCTTCCAGCAATAT
GCTACACACTACCCCCCAGCAGCACTGCTGGAAGGTTTGGAGGAGAATGAACAAAACATGCCTTG
ATGATGATGATGATGATGATGATGATAT
Found at i:71472380 original size:41 final size:41
Alignment explanation
Indices: 71472323--71472411 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
71472313 CAGAGCAACT
71472323 CTAAAAGACAGAGCATTAGCGGCGCTTT-TGGT-AAAAAGCCG
1 CTAAAAGACAGAGCATT-GCGGCG-TTTGTGGTCAAAAAGCCG
* *
71472364 CTAAAGGACAGAGCATTGCGGCGTTTGTGGTCAAAACGCCG
1 CTAAAAGACAGAGCATTGCGGCGTTTGTGGTCAAAAAGCCG
71472405 CTAAAAG
1 CTAAAAG
71472412 TCATATAACT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 3 0.07
40 10 0.23
41 30 0.70
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.19
Consensus pattern (41 bp):
CTAAAAGACAGAGCATTGCGGCGTTTGTGGTCAAAAAGCCG
Found at i:71473050 original size:24 final size:24
Alignment explanation
Indices: 71473023--71473071 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
71473013 CGTATATTTA
*
71473023 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
71473047 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
71473071 T
1 T
71473072 GTTATTTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:71473388 original size:7 final size:7
Alignment explanation
Indices: 71473351--71473396 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
71473341 GAGTTACTAT
*
71473351 TTTAAGG
1 TTTATGG
71473358 TTTATGG
1 TTTATGG
*
71473365 ATTATGG
1 TTTATGG
*
71473372 ATTATGG
1 TTTATGG
*
71473379 TTTATAG
1 TTTATGG
71473386 TTTATGG
1 TTTATGG
71473393 TTTA
1 TTTA
71473397 AGTGTTGGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (7 bp):
TTTATGG
Found at i:71473409 original size:21 final size:22
Alignment explanation
Indices: 71473385--71473430 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
71473375 ATGGTTTATA
*
71473385 GTTTATGGTTTAAGTGTT-GGG
1 GTTTAAGGTTTAAGTGTTAGGG
*
71473406 GTTTAAGGTTTAGGTGTTAGGG
1 GTTTAAGGTTTAAGTGTTAGGG
71473428 GTT
1 GTT
71473431 AGGGGTTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (22 bp):
GTTTAAGGTTTAAGTGTTAGGG
Found at i:71473439 original size:21 final size:22
Alignment explanation
Indices: 71473398--71473445 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
71473388 TATGGTTTAA
*
71473398 GTGTT-GGGGTTTAAGGTTTAG
1 GTGTTAGGGGTTTAAGGGTTAG
*
71473419 GTGTTAGGGG-TTAGGGGTTAG
1 GTGTTAGGGGTTTAAGGGTTAG
*
71473440 GAGTTA
1 GTGTTA
71473446 TGTGTTATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.38
Consensus pattern (22 bp):
GTGTTAGGGGTTTAAGGGTTAG
Found at i:71473824 original size:21 final size:21
Alignment explanation
Indices: 71473787--71473830 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
71473777 AATTTTATCT
*
71473787 AATTGTTTTAAATATTACTTA
1 AATTGTTTTAAAAATTACTTA
*
71473808 AATT-TTTTAAAAAATTATTTA
1 AATTGTTTT-AAAAATTACTTA
71473829 AA
1 AA
71473831 ATTAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
AATTGTTTTAAAAATTACTTA
Found at i:71473870 original size:22 final size:20
Alignment explanation
Indices: 71473817--71473873 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 20
71473807 AAATTTTTTA
71473817 AAAAATTATTTAAAATTAATAT
1 AAAAATTA--TAAAATTAATAT
71473839 AAAAGA-TATAATAATTCAATAT
1 AAAA-ATTATAA-AATT-AATAT
71473861 AAAAATTATAAAA
1 AAAAATTATAAAA
71473874 AAGTCAAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 3 0.10
21 7 0.23
22 20 0.65
23 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTATAAAATTAATAT
Found at i:71474103 original size:20 final size:18
Alignment explanation
Indices: 71474088--71474123 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
71474078 TATTTCTCTC
*
71474088 CCCCGATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
*
71474106 TCCCAATTCCCTTTTCTT
1 CCCCAATTCCCTTTTCTT
71474124 TCTTAGCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.08, C:0.42, G:0.03, T:0.47
Consensus pattern (18 bp):
CCCCAATTCCCTTTTCTT
Found at i:71476520 original size:68 final size:68
Alignment explanation
Indices: 71476373--71476527 Score: 156
Period size: 68 Copynumber: 2.2 Consensus size: 68
71476363 AGCCGATTTG
* * * * *
71476373 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
71476438 TATC
65 TATA
* *
71476442 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
71476504 ATATAGTA
62 ATATA-TA
71476512 TCTCGTAGCT-TCTTGT
1 TCTCGTAGCTCTCTTGT
71476528 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
67 6 0.08
68 28 0.38
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:71487852 original size:22 final size:23
Alignment explanation
Indices: 71487810--71487852 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
71487800 TTTCAAAAAT
*
71487810 TAAACATAATATAATATTTAACA
1 TAAAAATAATATAATATTTAACA
*
71487833 TAAAAATAA-ATATTATTTAA
1 TAAAAATAATATAATATTTAA
71487853 TTAAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAAAATAATATAATATTTAACA
Found at i:71488004 original size:42 final size:43
Alignment explanation
Indices: 71487873--71488023 Score: 205
Period size: 43 Copynumber: 3.5 Consensus size: 43
71487863 ATAATTTTTT
* * *
71487873 TAAAGTTCATAATTTTTAGCGGCGTTTGCGAGAAAAGCACCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGCGAGAAAAGCACCGC
** * * *
71487916 TAAAGGTCATGATCTTTAGTAGCGTTTGCGGGAAAAGCGCCAC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGCGAGAAAAGCACCGC
*
71487959 TAAAGGTCATGATCTTTAG-GGCGTTTACGAGAAAAGCACCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGCGAGAAAAGCACCGC
*
71488001 TAAAGGTCATGGTCTTTAGCGGC
1 TAAAGGTCATGATCTTTAGCGGC
71488024 ATTTTTTTAA
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 36 0.39
43 57 0.61
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (43 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGCGAGAAAAGCACCGC
Found at i:71492819 original size:46 final size:47
Alignment explanation
Indices: 71492687--71493000 Score: 239
Period size: 46 Copynumber: 6.6 Consensus size: 47
71492677 ATTATGAGCC
** * *
71492687 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGACGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATGTAAGCT
* * * * *
71492735 AGTTTAAGA-CATGTCTGAGACAT-GCAACGACCTCGAGATGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCTTGAGATGTAAGCT
*
71492781 AGCGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGT--G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGATGTAAGCT
* * * * ** *
71492824 CAGTATAAAACCATGTCTGGGACATGACATCAGCACAGATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATGT-A-AGCT
* * * * *
71492875 AGTGTAAGACCATGTTTGGGACATGGCGTCAGCCTCGATGATG-ATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGA-GATGTA-AGCT
* ** *
71492924 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAACTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGTAAGCT
*
71492971 AGTGTAAAACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
71493001 AGTATTCTAC
Statistics
Matches: 208, Mismatches: 44, Indels: 29
0.74 0.16 0.10
Matches are distributed among these distances:
43 1 0.00
44 7 0.03
45 16 0.08
46 58 0.28
47 48 0.23
48 13 0.06
49 32 0.15
50 28 0.13
51 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGTAAGCT
Found at i:71493076 original size:20 final size:22
Alignment explanation
Indices: 71493051--71493090 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
71493041 AGTGCTCCAA
71493051 ATGGTTCAA-C-AATGAGAGTT
1 ATGGTTCAAGCTAATGAGAGTT
*
71493071 ATGGTTTAAGCTAATGAGAG
1 ATGGTTCAAGCTAATGAGAG
71493091 AAGTGTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 1 0.06
22 8 0.47
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (22 bp):
ATGGTTCAAGCTAATGAGAGTT
Found at i:71498271 original size:47 final size:47
Alignment explanation
Indices: 71498217--71498552 Score: 465
Period size: 47 Copynumber: 7.1 Consensus size: 47
71498207 TTAGGATTTT
** * * *
71498217 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71498264 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
71498315 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71498362 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71498409 ATGTGATGAATGTGAACATGCGTATGTGTGATAATGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
71498456 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
71498503 ATGTGATGAATGTGAGCATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
71498550 ATG
1 ATG
71498553 CGAAATGTGT
Statistics
Matches: 267, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 219 0.82
49 11 0.04
51 37 0.14
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:71498459 original size:24 final size:24
Alignment explanation
Indices: 71498338--71498460 Score: 64
Period size: 24 Copynumber: 5.2 Consensus size: 24
71498328 GAACATGCGT
*
71498338 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAATGCCGAATGGCCA
* **
71498362 A--TGTGATGAATG-TGAACAT-GCGT
1 ATGTGTGAT-AATGCCG-A-ATGGCCA
*
71498385 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAATGCCGAATGGCCA
* **
71498409 A--TGTGATGAATG-TGAACAT-GCGT
1 ATGTGTGAT-AATGCCG-A-ATGGCCA
71498432 ATGTGTGATAATGCCGAATGGCCA
1 ATGTGTGATAATGCCGAATGGCCA
71498456 ATGTG
1 ATGTG
71498461 ATGAATGTGA
Statistics
Matches: 70, Mismatches: 15, Indels: 28
0.62 0.13 0.25
Matches are distributed among these distances:
22 14 0.20
23 18 0.26
24 24 0.34
25 14 0.20
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (24 bp):
ATGTGTGATAATGCCGAATGGCCA
Found at i:71498662 original size:46 final size:46
Alignment explanation
Indices: 71498526--71498662 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
71498516 GAGCATGTAT
* *
71498526 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
71498572 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
71498618 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
71498663 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:71504201 original size:46 final size:46
Alignment explanation
Indices: 71504109--71504287 Score: 195
Period size: 46 Copynumber: 3.8 Consensus size: 46
71504099 ATGGGTTATT
71504109 ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 ATGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGAC
* * *
71504157 GA-GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTTGAGAC
1 -ATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAC
* * * *
71504203 ATAAGCCAGTGTAAGACATGTTTGGGACATGCATC-G-ACT-ACGAG
1 ATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GAC
* *
71504247 ATGTGCCAGTGTAAGACTATCTCTGGGACATGGCATCGGCA
1 ATGAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCA
71504288 CAGATATGTG
Statistics
Matches: 110, Mismatches: 14, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
43 1 0.01
44 18 0.16
45 13 0.12
46 49 0.45
47 14 0.13
48 14 0.13
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
ATGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAC
Found at i:71512102 original size:49 final size:48
Alignment explanation
Indices: 71511941--71512159 Score: 168
Period size: 47 Copynumber: 4.6 Consensus size: 48
71511931 TAAACTAGCA
* * * *
71511941 TAAGA-CATGTCTAGGACAT-GCATCAG-CTACGAG--ATGTGTCAGTA
1 TAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATATGAGCCAGTG
* * * *
71511985 TAAAACCATGTCTAGGACATGGCATCAG-CAC-AGATATGTGAGAGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATA--T--GAGCCAGTG
* * *
71512035 TAAGACCATGTCTGGGACATGGCGTCGGCCTCGATGATCAT-AGTCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGA-GAT-ATGAGCCAGTG
* * *
71512084 TAAGACTATGTCTAGGACATGGCATC-GACTTGAGATATGAGCCAGTG
1 TAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAGCCAGTG
**
71512131 TAAGACCACATCTAGGACATGGCATCGGC
1 TAAGACCATGTCTAGGACATGGCATCGGC
71512160 ATTCTACGCC
Statistics
Matches: 138, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 6 0.04
45 15 0.11
46 11 0.08
47 33 0.24
48 7 0.05
49 29 0.21
50 29 0.21
51 2 0.01
52 2 0.01
53 3 0.02
54 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATATGAGCCAGTG
Found at i:71526898 original size:2 final size:2
Alignment explanation
Indices: 71526891--71526925 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
71526881 TTTTGTGCTT
*
71526891 CA CA CA CA CA CA CA CA CA TA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
71526926 CATATTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.49, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:71528570 original size:38 final size:38
Alignment explanation
Indices: 71528495--71528684 Score: 236
Period size: 38 Copynumber: 4.9 Consensus size: 38
71528485 GAATCCAGTC
* * *
71528495 ACCAGCACAAAACCTGTGGGACTTTAAGCTCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
*
71528535 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
71528573 ACCAGCACGAAGCCTGCGGGATTTAACACGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
71528611 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * **
71528649 TCCAGCATATAGCCTGCGAGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCG-GGATTTAA-CCCGGATA
71528685 CATCAAATAT
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
38 96 0.72
39 11 0.08
40 26 0.20
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:71533567 original size:40 final size:40
Alignment explanation
Indices: 71533491--71533586 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 40
71533481 CTATTTCCAT
* * * *
71533491 CCAACCCAACACACC-A-TGTGGGGACAAGATCGACCCAC
1 CCAACCCTACACACCAAGTATGGGGACAAAATCAACCCAC
* *
71533529 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCCAT
1 CCAACCCTACACACCAAGTATGGGGACAAAATCAACCCAC
*
71533569 GCAACCCTACACACCAAG
1 CCAACCCTACACACCAAG
71533587 AGTGTAACAC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 14 0.29
39 1 0.02
40 34 0.69
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.10
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGACAAAATCAACCCAC
Found at i:71535018 original size:40 final size:40
Alignment explanation
Indices: 71534974--71535161 Score: 283
Period size: 40 Copynumber: 4.7 Consensus size: 40
71534964 GCTACTTGCT
71534974 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71535014 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
71535054 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
71535094 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACT-CGCA
71535133 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
71535162 CATCCATCCA
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.23
40 101 0.75
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71539536 original size:40 final size:40
Alignment explanation
Indices: 71539487--71539662 Score: 241
Period size: 40 Copynumber: 4.3 Consensus size: 40
71539477 ATAACAACTC
*
71539487 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
**
71539527 GCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
71539567 GCACAAATGCCTTCGGGACTTAGCCCGG-TATAG-CAACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-ACTA
* *
71539606 CTCGCACAAATGCCTTC-GGACTTAGCCCTGGATATAGTAACTT
1 ---GCACAAATGCCTTCGGGACTTAGCCC-GGATATAGTCACTA
71539649 GCACAAATGCCTTC
1 GCACAAATGCCTTC
71539663 ATAGACCATC
Statistics
Matches: 122, Mismatches: 7, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
38 1 0.01
39 9 0.07
40 77 0.63
41 11 0.09
42 16 0.13
43 8 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
Found at i:71539655 original size:82 final size:80
Alignment explanation
Indices: 71539458--71539662 Score: 247
Period size: 80 Copynumber: 2.5 Consensus size: 80
71539448 ACCCAAGTAT
* * ** * *
71539458 CTTCGAGATTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
71539522 CACTAGCATGAATGC
66 CACTAGCACAAATGC
*
71539537 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
71539600 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
71539619 CTTC-GGACTTAGCCCTGGATATAGTAACTTGCACAAATGCCTTC
1 CTTCGGGACTTAGCCC-GGATATAGTAACTAGCACAAATGCCTTC
71539663 ATAGACCATC
Statistics
Matches: 109, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 20 0.18
80 39 0.36
81 11 0.10
82 38 0.35
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:71543604 original size:40 final size:40
Alignment explanation
Indices: 71543555--71543747 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
71543545 ATAACAACTC
*
71543555 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACAA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAA
** *
71543595 GCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAA
* * *
71543635 GCACAAATACCTTCGGGACTTAGCCCGGGTATAG-CAACTACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-AC-A--A
* * * **
71543678 GCACAAATGCATTCGGGACTTAGCTCGGATATAGTAACTT
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAA
*
71543718 GCACAAATGCCTTCGGGATTTAGCCCGGAT
1 GCACAAATGCCTTCGGGACTTAGCCCGGAT
71543748 TTCATCCGAA
Statistics
Matches: 128, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 95 0.74
43 32 0.25
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAA
Found at i:71543722 original size:83 final size:79
Alignment explanation
Indices: 71543535--71543747 Score: 248
Period size: 83 Copynumber: 2.6 Consensus size: 79
71543525 TCTTCGAGAT
** * * **
71543535 TTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACAAGCATG
1 TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAAGCACA
*
71543600 AATGCCTTCGGGAC
66 AATGCATTCGGGAC
* * * *
71543614 TTAGCCCGGATATAGTCACTAGCACAAATACCTTCGGGACTTAGCCCGGGTATAG-CAACTACTC
1 TTAG-CCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC-AC-A--A
71543678 GCACAAATGCATTCGGGAC
61 GCACAAATGCATTCGGGAC
* *
71543697 TTAGCTCGGATATAGTAACTTGCACAAATGCCTTCGGGATTTAGCCCGGAT
1 TTAGC-CGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAT
71543748 TTCATCCGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
79 5 0.04
80 45 0.40
81 1 0.01
82 1 0.01
83 60 0.54
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (79 bp):
TTAGCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACAAGCACA
AATGCATTCGGGAC
Found at i:71547725 original size:40 final size:40
Alignment explanation
Indices: 71547647--71547870 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
71547637 ACCCAAGTAT
* *
71547647 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
71547686 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
71547726 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71547766 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
71547809 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
71547849 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
71547871 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71547843 original size:83 final size:80
Alignment explanation
Indices: 71547647--71547870 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
71547637 ACCCAAGTAT
* * * *
71547647 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
71547711 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
71547726 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
71547790 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
71547809 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
71547871 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:71553626 original size:39 final size:39
Alignment explanation
Indices: 71553543--71553680 Score: 113
Period size: 39 Copynumber: 3.6 Consensus size: 39
71553533 TGAAACCAAT
*
71553543 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGGTATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
* * * *
71553581 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
* * ** * *
71553620 TTCCAGCACGTAGCCTGC-GGACCTTAAATCCGGATATAA
1 TACCAGCACGAAGCCTGCGGGAATTTAAACCCGG-CATAA
*
71553659 TTCCAGCAC-ATAGCCTGCGGGA
1 TACCAGCACGA-AGCCTGCGGGA
71553681 CCCTAAGTCC
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
38 20 0.25
39 58 0.72
40 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
TACCAGCACGAAGCCTGCGGGAATTTAAACCCGGCATAA
Found at i:71556389 original size:49 final size:49
Alignment explanation
Indices: 71556256--71556515 Score: 212
Period size: 49 Copynumber: 5.4 Consensus size: 49
71556246 TCGATGCTAC
* ** *
71556256 GTCCCAGACAGGTCTTACACTAACTTCCATATATCAAGGCCGACGCCAT
1 GTCCCAGACAAGTCTTACACTGGCTTCCATATATCGAGGCCGACGCCAT
* *
71556305 GTCCCAGACAGGTCTTACACTGACTTCCATATATCGAGGCCGACGCCAT
1 GTCCCAGACAAGTCTTACACTGGCTTCCATATATCGAGGCCGACGCCAT
* * * ** *
71556354 GTCCTAGACAAGTCTTACATTGGC-TCTCATCTATCG-GTGTAGATGCCAT
1 GTCCCAGACAAGTCTTACACTGGCTTC-CATATATCGAG-GCCGACGCCAT
* * * * * *
71556403 ATCCCAGACAGGTCTTACACT-G---ACACATGTC-AAGCCGACGCCAT
1 GTCCCAGACAAGTCTTACACTGGCTTCCATATATCGAGGCCGACGCCAT
* * * * * * *
71556447 GTCCTAGACAAGTCTTAAATTGGCTTGCATATCTCGAGGCTGATG-CAT
1 GTCCCAGACAAGTCTTACACTGGCTTCCATATATCGAGGCCGACGCCAT
*
71556495 GTCCCAGACATGTCTTACACT
1 GTCCCAGACAAGTCTTACACT
71556516 AGTACACATA
Statistics
Matches: 166, Mismatches: 37, Indels: 17
0.75 0.17 0.08
Matches are distributed among these distances:
44 24 0.14
45 6 0.04
48 30 0.18
49 106 0.64
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
GTCCCAGACAAGTCTTACACTGGCTTCCATATATCGAGGCCGACGCCAT
Found at i:71556492 original size:93 final size:94
Alignment explanation
Indices: 71556300--71556527 Score: 268
Period size: 93 Copynumber: 2.4 Consensus size: 94
71556290 CAAGGCCGAC
* *
71556300 GCCATGTCCCAGACAGGTCTTACACTGACTTCCATATATCGAGGCCGACGCCATGTCCTAGACAA
1 GCCATGTCCCAGACAGGTCTTACACTGA----CACATATCGAAGCCGACGCCATGTCCTAGACAA
* *
71556365 GTCTTACATTGGCTCTCATCTATCGGTGTAGAT
62 GTCTTAAATTGGCTCTCATATATCGGTGTAGAT
* *
71556398 GCCATATCCCAGACAGGTCTTACACTGACACATGTC-AAGCCGACGCCATGTCCTAGACAAGTCT
1 GCCATGTCCCAGACAGGTCTTACACTGACACATATCGAAGCCGACGCCATGTCCTAGACAAGTCT
*
71556462 TAAATTGGCT-TGCATATCTCGAG-GCT-GAT
66 TAAATTGGCTCT-CATATATCG-GTG-TAGAT
*
71556491 G-CATGTCCCAGACATGTCTTACACTAGTACACATATC
1 GCCATGTCCCAGACAGGTCTTACACT-G-ACACATATC
71556528 ACCCAAATGT
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
92 23 0.20
93 49 0.43
94 16 0.14
98 27 0.23
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (94 bp):
GCCATGTCCCAGACAGGTCTTACACTGACACATATCGAAGCCGACGCCATGTCCTAGACAAGTCT
TAAATTGGCTCTCATATATCGGTGTAGAT
Found at i:71558189 original size:12 final size:12
Alignment explanation
Indices: 71558172--71558198 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71558162 CACACGCTCG
71558172 TGTGTTAGGCCA
1 TGTGTTAGGCCA
71558184 TGTGTTAGGCCA
1 TGTGTTAGGCCA
71558196 TGT
1 TGT
71558199 AACTCAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37
Consensus pattern (12 bp):
TGTGTTAGGCCA
Found at i:71561725 original size:46 final size:44
Alignment explanation
Indices: 71561669--71561788 Score: 168
Period size: 46 Copynumber: 2.6 Consensus size: 44
71561659 ACTAGTGCTT
71561669 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGT--GCC
* * * *
71561715 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGTGCC
71561759 AGTGTAAGACCATGTCTGGGACATAGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
71561789 CACACAAATA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
44 11 0.16
45 14 0.21
46 43 0.63
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGTGCC
Found at i:71566967 original size:40 final size:40
Alignment explanation
Indices: 71566896--71566994 Score: 128
Period size: 41 Copynumber: 2.5 Consensus size: 40
71566886 TATCTTGTAT
* * *
71566896 ACTAAGTGTCGTACATAGCCAAGCTATCTCAAAC-CGCAC
1 ACTAAGTGCCATATATAGCCAAGCTATCTCAAACTCGCAC
* *
71566935 ATTAAGTGCCATATATAGCCGAAGCTATCTCAATCTCGCAC
1 ACTAAGTGCCATATATAGCC-AAGCTATCTCAAACTCGCAC
*
71566976 ACTAAGTGCCATTTATAGC
1 ACTAAGTGCCATATATAGC
71566995 TGCTTTGTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 16 0.31
40 13 0.25
41 22 0.43
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (40 bp):
ACTAAGTGCCATATATAGCCAAGCTATCTCAAACTCGCAC
Found at i:71567508 original size:19 final size:19
Alignment explanation
Indices: 71567463--71567500 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71567453 AAATCACTTT
71567463 ACAAAAACTATTAATCTAA
1 ACAAAAACTATTAATCTAA
71567482 ACAAAAACTATTAATCTAA
1 ACAAAAACTATTAATCTAA
71567501 CATTAAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (19 bp):
ACAAAAACTATTAATCTAA
Found at i:71572981 original size:22 final size:22
Alignment explanation
Indices: 71572953--71572998 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
71572943 TATCCTTAAG
71572953 ATAACTTTTATTAAAACATCAC
1 ATAACTTTTATTAAAACATCAC
71572975 ATAACTTTTATTAAAACATCAC
1 ATAACTTTTATTAAAACATCAC
71572997 AT
1 AT
71572999 TTTTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (22 bp):
ATAACTTTTATTAAAACATCAC
Found at i:71573004 original size:19 final size:20
Alignment explanation
Indices: 71572958--71573004 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 20
71572948 TTAAGATAAC
71572958 TTTTATTAAAACATCACATAA
1 TTTTATTAAAACATCACAT-A
71572979 CTTTTATTAAAACATCACAT-
1 -TTTTATTAAAACATCACATA
71572999 TTTTAT
1 TTTTAT
71573005 ATTTAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.24
22 19 0.76
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTATTAAAACATCACATA
Found at i:71573175 original size:19 final size:19
Alignment explanation
Indices: 71573138--71573175 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
71573128 AAGTTAATAA
**
71573138 CAAATTTAATTACGGTGGG
1 CAAATTTAATTACAATGGG
71573157 CAAATTTAATTACAATGGG
1 CAAATTTAATTACAATGGG
71573176 TGACAGTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.32
Consensus pattern (19 bp):
CAAATTTAATTACAATGGG
Found at i:71579649 original size:16 final size:16
Alignment explanation
Indices: 71579616--71579646 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
71579606 TTTGAAGAAA
71579616 AATAAATTTTAAATTT
1 AATAAATTTTAAATTT
71579632 AATAAA-TTTAAATTT
1 AATAAATTTTAAATTT
71579647 TAAGTAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATAAATTTTAAATTT
Found at i:71579734 original size:22 final size:24
Alignment explanation
Indices: 71579704--71579751 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
71579694 ATAATAAACA
*
71579704 TTTATATTATA-AATTATGAATAT
1 TTTATATTATATAAATATGAATAT
*
71579727 TTTA-ATTATATAAATATGAGTAT
1 TTTATATTATATAAATATGAATAT
71579750 TT
1 TT
71579752 GTTTAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (24 bp):
TTTATATTATATAAATATGAATAT
Found at i:71581999 original size:25 final size:27
Alignment explanation
Indices: 71581962--71582014 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
71581952 TCAAACATGC
71581962 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
71581988 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
71582014 A
1 A
71582015 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:71583525 original size:26 final size:26
Alignment explanation
Indices: 71583489--71583572 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
71583479 CATGAAATTC
71583489 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
71583515 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* **
71583541 TTATCATGGAACATTTACCTAACATA
1 TTATCATGAAACATTTACCTAACCCA
71583567 TTATCA
1 TTATCA
71583573 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:71586884 original size:26 final size:26
Alignment explanation
Indices: 71586838--71586890 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
71586828 TCAAACATGC
*
71586838 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
71586864 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
71586890 A
1 A
71586891 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:71588410 original size:26 final size:26
Alignment explanation
Indices: 71588374--71588457 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
71588364 CATGAAATTC
71588374 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
71588400 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
71588426 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
71588452 TTATCA
1 TTATCA
71588458 ATTTGAATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:71594863 original size:9 final size:8
Alignment explanation
Indices: 71594848--71594872 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
71594838 ATGGTAATAA
71594848 ATTTTTTT
1 ATTTTTTT
71594856 ATTTTTTT
1 ATTTTTTT
71594864 ATTTTTTT
1 ATTTTTTT
71594872 A
1 A
71594873 ATATCATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:71599348 original size:30 final size:30
Alignment explanation
Indices: 71599314--71599374 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
71599304 TCCTTAACTC
71599314 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
71599344 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
71599374 A
1 A
71599375 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:71600344 original size:15 final size:15
Alignment explanation
Indices: 71600326--71600368 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
71600316 GGATATAAAT
71600326 ATGATGATGATAACG
1 ATGATGATGATAACG
*
71600341 ATGATGATGATGACG
1 ATGATGATGATAACG
* *
71600356 ACGACGATGATAA
1 ATGATGATGATAA
71600369 TGAGCCAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (15 bp):
ATGATGATGATAACG
Found at i:71600359 original size:18 final size:18
Alignment explanation
Indices: 71600326--71600371 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
71600316 GGATATAAAT
* *
71600326 ATGATGATGATAACGATG
1 ATGATGATGACAACGACG
*
71600344 ATGATGATGACGACGACG
1 ATGATGATGACAACGACG
*
71600362 ATGATAATGA
1 ATGATGATGA
71600372 GCCAAAACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.09, G:0.28, T:0.24
Consensus pattern (18 bp):
ATGATGATGACAACGACG
Found at i:71605678 original size:27 final size:28
Alignment explanation
Indices: 71605633--71605691 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
71605623 TAATTACTCT
*
71605633 ATTTTAGTCCATAACCTCGTACTTTC-TG
1 ATTTAAGTCCATAACCTCG-ACTTTCTTG
* *
71605661 ATTTAAGTCCA-AATCTCGATTTTCTTG
1 ATTTAAGTCCATAACCTCGACTTTCTTG
71605688 ATTT
1 ATTT
71605692 GTAAGTGAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.19
27 12 0.44
28 10 0.37
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (28 bp):
ATTTAAGTCCATAACCTCGACTTTCTTG
Found at i:71608800 original size:42 final size:42
Alignment explanation
Indices: 71608703--71608834 Score: 196
Period size: 40 Copynumber: 3.1 Consensus size: 42
71608693 TTAAGCCCGG
* *
71608703 ATATAATACCAGCACTAAGCCTGTGGGATTTAACCCGG--AT
1 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATAT
71608743 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATAT
* *
71608785 ATATATTACCAGCACGAAGCCTGCGAGACTTTAACCCGGATAT
1 ATATATTACCAGCACGAAGCCTGTGGGA-TTTAACCCGGATAT
71608828 ACTATAT
1 A-TATAT
71608835 ATTGAGTGCT
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
40 36 0.43
42 28 0.33
43 15 0.18
44 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
ATATATTACCAGCACGAAGCCTGTGGGATTTAACCCGGATAT
Found at i:71611776 original size:37 final size:37
Alignment explanation
Indices: 71611717--71611788 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
71611707 AGCTCAGACG
* *
71611717 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
*
71611754 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTCACCCGGA
71611789 ATATATTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTCACCCGGACA
Found at i:71612223 original size:47 final size:47
Alignment explanation
Indices: 71611993--71612233 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
71611983 TATATATATT
* * * *
71611993 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
71612040 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
71612087 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
71612134 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
71612181 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
71612228 TCACAT
1 TCACAT
71612234 AAAATCCTAA
Statistics
Matches: 173, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 173 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71612233 original size:94 final size:94
Alignment explanation
Indices: 71611993--71612212 Score: 413
Period size: 94 Copynumber: 2.3 Consensus size: 94
71611983 TATATATATT
* * *
71611993 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
71612058 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
71612087 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
71612152 CTTATCACACATATGCATGCTCACATTCA
66 CTTATCACACATATGCATGCTCACATTCA
71612181 TCACATTGGCCATTCGGCCTTATCACATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
71612213 ACACATTCAC
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 123 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (94 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCA
Found at i:71620729 original size:40 final size:41
Alignment explanation
Indices: 71620648--71620875 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 41
71620638 GGCTCAAAGG
* *
71620648 CTGCGGGACTTTAAGCCCGG--ATATAGTA-CAGCACTAAGC
1 CTGCGGGACTTTAA-CCCGGATATATATTACCAGCACGAAGC
71620687 CTGCGGGA-TTTAACCCGGATATATATTACCAGCACGAAGC
1 CTGCGGGACTTTAACCCGGATATATATTACCAGCACGAAGC
*
71620727 CTGCGGGA-TTTAACCTGGATATATATTACCAGCACGAAGC
1 CTGCGGGACTTTAACCCGGATATATATTACCAGCACGAAGC
* *
71620767 CTGCGGGACTTTAACCCAGATATATATAACCAGCACGAAGC
1 CTGCGGGACTTTAACCCGGATATATATTACCAGCACGAAGC
* *
71620808 CTGCAGGACTTTAACCCGGATATATATATTACTAGCACGAAGC
1 CTGCGGGACTTTAACCCGG--ATATATATTACCAGCACGAAGC
* * *
71620851 CTGTGGGATTTTAACCCAGATATAT
1 CTGCGGGACTTTAACCCGGATATAT
71620876 TATATATTGA
Statistics
Matches: 169, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
37 5 0.03
38 5 0.03
39 15 0.09
40 57 0.34
41 52 0.31
43 35 0.21
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (41 bp):
CTGCGGGACTTTAACCCGGATATATATTACCAGCACGAAGC
Found at i:71620864 original size:84 final size:79
Alignment explanation
Indices: 71620668--71620875 Score: 290
Period size: 84 Copynumber: 2.5 Consensus size: 79
71620658 TTAAGCCCGG
* * * * *
71620668 ATATAGTACAGCACTAAGCCTGCGGGATTTAACCCGGATATATATTACCAGCACGAAGCCTGCGG
1 ATATATTACAGCACGAAGCCTGCGGGATTTAACCCAGATATATATAACCAGCACGAAGCCTGCAG
*
71620733 GATTTAACCTGGAT
66 GATTTAACCCGGAT
71620747 ATATATTACCAGCACGAAGCCTGCGGGACTTTAACCCAGATATATATAACCAGCACGAAGCCTGC
1 ATATATTA-CAGCACGAAGCCTGCGGGA-TTTAACCCAGATATATATAACCAGCACGAAGCCTGC
71620812 AGGACTTTAACCCGGATAT
64 AGGA-TTTAACCCGG--AT
*
71620831 ATATATTACTAGCACGAAGCCTGTGGGATTTTAACCCAGATATAT
1 ATATATTAC-AGCACGAAGCCTGCGGGA-TTTAACCCAGATATAT
71620876 TATATATTGA
Statistics
Matches: 115, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
79 7 0.06
80 18 0.16
81 37 0.32
82 9 0.08
83 1 0.01
84 43 0.37
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (79 bp):
ATATATTACAGCACGAAGCCTGCGGGATTTAACCCAGATATATATAACCAGCACGAAGCCTGCAG
GATTTAACCCGGAT
Found at i:71623592 original size:27 final size:27
Alignment explanation
Indices: 71623552--71623677 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
71623542 GCATTATTGA
* ** *
71623552 GAAGCTCACAAAGATATAATTTAATGG
1 GAAGCTCACGAAGAGCTAATTTAACGG
71623579 GAAGCTCACGAAGAGCTAATTTAACGG
1 GAAGCTCACGAAGAGCTAATTTAACGG
*
71623606 GAAGCTCGCGAAGAGCTAATTTAACGG
1 GAAGCTCACGAAGAGCTAATTTAACGG
*
71623633 GAAGCTCACGATGAGCTAATTTAAC-G
1 GAAGCTCACGAAGAGCTAATTTAACGG
*
71623659 GAATGCTCA-TAAGAGCTAA
1 GAA-GCTCACGAAGAGCTAA
71623678 GATGTGTCCA
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 12 0.13
27 77 0.87
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (27 bp):
GAAGCTCACGAAGAGCTAATTTAACGG
Found at i:71626849 original size:24 final size:23
Alignment explanation
Indices: 71626800--71626849 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
71626790 TAAAGTAGGT
* *
71626800 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
71626823 TATATTATGATTTTTATTAAT-TCA
1 TATA-TATGATTTTTA-TAATATCA
71626847 TAT
1 TAT
71626850 TTTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 15 0.65
25 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:71626939 original size:55 final size:57
Alignment explanation
Indices: 71626825--71626973 Score: 162
Period size: 58 Copynumber: 2.5 Consensus size: 57
71626815 TAATATTATA
* *
71626825 TATTATGATTTTTATT-AATTCATATTTTAATAATAATTATATTAAAAATGTTATTAAATTA-
1 TATTATTA-TTTTATTAAATT-ATA-TTTAAT-A-AATAATATTAAAAATG-TATTAAATTAC
*
71626886 TA-TATTATTTTATTAAATTATATTTAATAAATAATGTTAAAATATG-ATTAAATTAC
1 TATTATTATTTTATTAAATTATATTTAATAAATAATATTAAAA-ATGTATTAAATTAC
*
71626942 TTATTATTTTTTTATTAAATTATATTTAATAA
1 -TATTATTATTTTATTAAATTATATTTAATAA
71626974 TATTATTCAA
Statistics
Matches: 79, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
55 9 0.11
56 11 0.14
57 6 0.08
58 33 0.42
59 10 0.13
60 8 0.10
61 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (57 bp):
TATTATTATTTTATTAAATTATATTTAATAAATAATATTAAAAATGTATTAAATTAC
Found at i:71628470 original size:35 final size:37
Alignment explanation
Indices: 71628399--71628496 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
71628389 ATAATCTTCA
71628399 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
71628437 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
71628472 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
71628497 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:71628496 original size:17 final size:19
Alignment explanation
Indices: 71628399--71628489 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
71628389 ATAATCTTCA
71628399 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71628418 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71628437 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71628454 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71628472 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
71628490 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:71628804 original size:18 final size:17
Alignment explanation
Indices: 71628781--71628814 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
71628771 TTTCCCGAAT
*
71628781 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
71628799 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
71628815 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:71633905 original size:21 final size:21
Alignment explanation
Indices: 71633876--71633916 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
71633866 AGCTTAAATG
71633876 ATGGCTGAATAAGTA-GAATTC
1 ATGGCTGAA-AAGTATGAATTC
*
71633897 ATGGTTGAAAAGTATGAATT
1 ATGGCTGAAAAGTATGAATT
71633917 GAAATTGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (21 bp):
ATGGCTGAAAAGTATGAATTC
Found at i:71635249 original size:39 final size:39
Alignment explanation
Indices: 71635193--71635351 Score: 237
Period size: 39 Copynumber: 4.1 Consensus size: 39
71635183 CATGGTATTT
* *
71635193 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATGTGCTG
* *
71635232 GGAATATATCCGGACATGAGGTCCGCAGGCTATGTGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATGTGCTG
*
71635271 GAAATATATCCGGACTTGAAGTCCGCAGGCTATGTGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATGTGCTG
* * * *
71635310 GAAATATATCCGGACTTGAAGTCCGCAAGTTACGTGCTG
1 GAAATATATCCGGACATGAAGTCCGCAGGCTATGTGCTG
71635349 GAA
1 GAA
71635352 TGGTACCCGG
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (39 bp):
GAAATATATCCGGACATGAAGTCCGCAGGCTATGTGCTG
Found at i:71635738 original size:18 final size:18
Alignment explanation
Indices: 71635715--71635749 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71635705 GAGTTAAACG
*
71635715 AATCGAGTTATTTGAGTT
1 AATCGAGTTATTCGAGTT
71635733 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
71635750 CAACTCGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Done.