Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 212 of 362
Found at i:71635828 original size:9 final size:9
Alignment explanation
Indices: 71635800--71635837 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
71635790 TGAGTTTTCG
71635800 AATTCGAAT
1 AATTCGAAT
*
71635809 AACTCGAAAT
1 AATTCG-AAT
71635819 AATTCGAAT
1 AATTCGAAT
71635828 AATTCGAAT
1 AATTCGAAT
71635837 A
1 A
71635838 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:71645016 original size:220 final size:220
Alignment explanation
Indices: 71644626--71645087 Score: 757
Period size: 220 Copynumber: 2.1 Consensus size: 220
71644616 GTAACAGGCT
* *
71644626 AAAG-CATAGCAGATTTGACCTTTAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCT
1 AAAGACATAGCAGATTTGACCTTTACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
*
71644690 CTGTATTGTCAGAGAATAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
* * *
71644755 CGAAGACATAACAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCTAAGATGATTTGGCA
131 CGAAGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGAAGATCCAAGATGATTTGGCA
71644820 TCCTTGAGTTGACAAGGAGAAGATC
196 TCCTTGAGTTGACAAGGAGAAGATC
* * * *
71644845 AAAGACATTGCAGATTTG-GCTTTCACGTGTTTATGCTGAAGCAGATCTAAGATGATTTAACATC
1 AAAGACATAGCAGATTTGACCTTT-ACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATC
*
71644909 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGTAGA
65 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
*
71644974 TCGAAGACATAGCAGATCTAACCTTCGGATGTCTTCACATCGAAGAAGATCCAAGATGATTTGGC
130 TCGAAGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGAAGATCCAAGATGATTTGGC
* *
71645039 ATCCTTGCGTTGACAAGGAGCAGATC
195 ATCCTTGAGTTGACAAGGAGAAGATC
* *
71645065 GAAGACATAGCAGATCTGACCTT
1 AAAGACATAGCAGATTTGACCTT
71645088 CATTGAAGCA
Statistics
Matches: 222, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
219 8 0.04
220 211 0.95
221 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
AAAGACATAGCAGATTTGACCTTTACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
CTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
CGAAGACATAACAGATCTAACCTTCGGATGTCTTCACATCGAAGAAGATCCAAGATGATTTGGCA
TCCTTGAGTTGACAAGGAGAAGATC
Found at i:71645314 original size:78 final size:78
Alignment explanation
Indices: 71645015--71645313 Score: 388
Period size: 78 Copynumber: 3.8 Consensus size: 78
71645005 TCTTCACATC
* ** *
71645015 GAAGAAGATCCAAGATGATTTGGCATC-CTTGCGTT-GACAAGGAGCAGATCGAAGACATAGCAG
1 GAAGCAGATCCAAGATGATTTGGCATCTC-TGTATTAGACAGGGAGCAGATCGAAGACATAGCAG
71645078 ATCTGACCTTCATT
65 ATCTGACCTTCATT
* * ** * * *
71645092 GAAGCAGATCGAAGATGATTTGGCATCTCTATATTAGATGGGGAGCAGACCGAAGACACAGCATA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGA
*
71645157 TCTGTCCTTCATT
66 TCTGACCTTCATT
* * **
71645170 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAATAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGA
71645235 T-TGGACCTTCATT
66 TCT-GACCTTCATT
* * *
71645248 GAAGCAGATCCAAGATGATTTAGCATCTCTGTATTAGATAGGGAGCAGATCGAAGACATAGTAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGA
71645313 T
66 T
71645314 TTGGCTTTCA
Statistics
Matches: 192, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
77 29 0.15
78 163 0.85
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (78 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGA
TCTGACCTTCATT
Found at i:71645455 original size:287 final size:289
Alignment explanation
Indices: 71645108--71645726 Score: 868
Period size: 287 Copynumber: 2.1 Consensus size: 289
71645098 GATCGAAGAT
* * * *
71645108 GATTTGGCATCTCTATATTAGATGGGGAGCAGACCGAAGACACAGCATATCTGTCCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
* *
71645173 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGACATAATAGATTG
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
*
71645238 GACCTTCATTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTAGATAG-GGAGCAGATCGAA
131 GACCTTCATTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTAGA-AGAGAAGCAGATCGAA
* * * * * *
71645302 GACATAGTAGATTTGGCTTTCACGTGTTTAC-GCTGAAGCAGATCTAAGAT-GATTTGGCATCTC
195 GACATAGCAGATCTGACCTTCACGTGTTTACATC-GAAGCAGATCCAAGATAGATTTGGCATCTC
*
71645365 TGTACT-GTCAGAGAACAAATCGAAGAAACA
259 TGTACTAGACAGAGAACAAATCGAAGAAACA
* * * *
71645395 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
71645460 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
* * * * *
71645525 GACCTTCATTGAAGTAGATCCAAGATGATTTGGCATCTTTGTATTAGACGAGAAGCAGATTGAAG
131 GACCTTCATTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTAGAAGAGAAGCAGATCGAAG
*
71645590 ACATAGCAGATCTGACCTTCATGTGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCT
196 ACATAGCAGATCTGACCTTCACGTGTTTACATCGAAGCAGATCCAAGAT---AGATTTGGCATCT
* * * * * * *
71645655 CTGTATTAGACGGGGAGCAGATTGAAGAAGCA
258 CTGTACTAGACAGAGAACAAATCGAAGAAACA
* *
71645687 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGA
71645727 TAATAGATTT
Statistics
Matches: 289, Mismatches: 36, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
286 1 0.00
287 217 0.75
288 1 0.00
291 18 0.06
292 52 0.18
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (289 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATTG
GACCTTCATTGAAGCAGATCCAAGATGATTTAGCATCTCTGTATTAGAAGAGAAGCAGATCGAAG
ACATAGCAGATCTGACCTTCACGTGTTTACATCGAAGCAGATCCAAGATAGATTTGGCATCTCTG
TACTAGACAGAGAACAAATCGAAGAAACA
Found at i:71645503 original size:78 final size:78
Alignment explanation
Indices: 71645395--71645682 Score: 335
Period size: 78 Copynumber: 3.5 Consensus size: 78
71645385 CGAAGAAACA
** * *
71645395 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
71645460 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
71645473 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
71645537 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
71645551 GATTTGGCATCTTTGTATTAGACGAGAAGCAGATTGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA-----
71645616 TTACATCGAAGCAGATCCAAGAT
61 -T---T-GAAGCAGATCCAAGAT
*
71645639 GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA
71645683 AGCAGATTTG
Statistics
Matches: 179, Mismatches: 15, Indels: 18
0.84 0.07 0.08
Matches are distributed among these distances:
77 1 0.01
78 123 0.69
79 1 0.01
84 1 0.01
87 1 0.01
88 15 0.08
92 37 0.21
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:71645691 original size:44 final size:45
Alignment explanation
Indices: 71645625--71645779 Score: 233
Period size: 45 Copynumber: 3.5 Consensus size: 45
71645615 TTTACATCGA
* *
71645625 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAG-CAGATTTGGCGTCTCTGTATTAGACGGGG
*
71645670 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTAGACGGGG
**
71645714 AGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTAGACGGGG
*
71645759 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAGCAGAT
71645780 ATCGCCTTCC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
44 40 0.40
45 59 0.60
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (45 bp):
AGCAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTAGACGGGG
Found at i:71646156 original size:14 final size:15
Alignment explanation
Indices: 71646137--71646192 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
71646127 AATCTTCAAT
71646137 GATATG-CAATCTTA
1 GATATGACAATCTTA
71646151 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
71646168 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
71646186 GATATGA
1 GATATGA
71646193 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:71646181 original size:35 final size:37
Alignment explanation
Indices: 71646135--71646213 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
71646125 ATAATCTTCA
71646135 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
71646171 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
71646207 A-GATATG
1 ATGATATG
71646214 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:71646213 original size:17 final size:19
Alignment explanation
Indices: 71646135--71646206 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
71646125 ATAATCTTCA
71646135 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71646154 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71646171 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71646189 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
71646207 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:71646232 original size:22 final size:22
Alignment explanation
Indices: 71646135--71646229 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
71646125 ATAATCTTCA
71646135 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71646154 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71646171 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71646189 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
71646211 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
71646230 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:71646520 original size:17 final size:17
Alignment explanation
Indices: 71646496--71646530 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
71646486 TGTTTCCCGT
*
71646496 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
71646514 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
71646531 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:71649197 original size:15 final size:15
Alignment explanation
Indices: 71649177--71649253 Score: 76
Period size: 15 Copynumber: 5.5 Consensus size: 15
71649167 GAAGCCAGAT
71649177 CACCATGACCACGAG
1 CACCATGACCACGAG
**
71649192 CACCATGATGA--AG
1 CACCATGACCACGAG
71649205 -ACCATGACCACGAG
1 CACCATGACCACGAG
**
71649219 CACCATGATGA--AG
1 CACCATGACCACGAG
71649232 -ACCATGACCACGAG
1 CACCATGACCACGAG
71649246 CACCATGA
1 CACCATGA
71649254 TGAAGAGGAT
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
12 16 0.33
13 4 0.08
14 4 0.08
15 24 0.50
ACGTcount: A:0.36, C:0.32, G:0.21, T:0.10
Consensus pattern (15 bp):
CACCATGACCACGAG
Found at i:71649208 original size:27 final size:27
Alignment explanation
Indices: 71649178--71649259 Score: 164
Period size: 27 Copynumber: 3.0 Consensus size: 27
71649168 AAGCCAGATC
71649178 ACCATGACCACGAGCACCATGATGAAG
1 ACCATGACCACGAGCACCATGATGAAG
71649205 ACCATGACCACGAGCACCATGATGAAG
1 ACCATGACCACGAGCACCATGATGAAG
71649232 ACCATGACCACGAGCACCATGATGAAG
1 ACCATGACCACGAGCACCATGATGAAG
71649259 A
1 A
71649260 GGATCATGAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.38, C:0.29, G:0.22, T:0.11
Consensus pattern (27 bp):
ACCATGACCACGAGCACCATGATGAAG
Found at i:71649303 original size:15 final size:15
Alignment explanation
Indices: 71649285--71649318 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
71649275 GCATCACCAC
*
71649285 CACCAGCACCATCAT
1 CACCACCACCATCAT
*
71649300 CACCACCGCCATCAT
1 CACCACCACCATCAT
71649315 CACC
1 CACC
71649319 GTGGAGAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.53, G:0.06, T:0.12
Consensus pattern (15 bp):
CACCACCACCATCAT
Found at i:71667837 original size:26 final size:26
Alignment explanation
Indices: 71667801--71667853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
71667791 GTTTTGAAAA
71667801 CAAATATCATTTTGGAAAACCGCGCT
1 CAAATATCATTTTGGAAAACCGCGCT
*
71667827 CAAATATCATTTTGGAAAACCGTGCT
1 CAAATATCATTTTGGAAAACCGCGCT
71667853 C
1 C
71667854 TACTTTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
CAAATATCATTTTGGAAAACCGCGCT
Found at i:71683456 original size:19 final size:20
Alignment explanation
Indices: 71683421--71683458 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71683411 ATAAGGTGGT
71683421 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71683441 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71683459 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:71690025 original size:40 final size:40
Alignment explanation
Indices: 71689947--71690170 Score: 265
Period size: 40 Copynumber: 5.5 Consensus size: 40
71689937 ACCCAAGTAT
* * *
71689947 CTTCGGGATTTAG-CTGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
71689986 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71690026 CTTCAGGACTTAGCCTGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71690066 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
71690109 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
71690149 CTTCGGGATTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
71690171 CATCCGAATA
Statistics
Matches: 158, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 12 0.08
40 109 0.69
41 1 0.01
43 36 0.23
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71690143 original size:83 final size:80
Alignment explanation
Indices: 71689947--71690170 Score: 281
Period size: 83 Copynumber: 2.8 Consensus size: 80
71689937 ACCCAAGTAT
* * * * *
71689947 CTTCGGGATTTAG-CTGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAGT
1 CTTCGGGACTTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
71690011 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * *
71690026 CTTCAGGACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
71690090 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
71690109 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGATTTAGCCCGGATAT
1 CTTCGGGACTTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
71690171 CATCCGAATA
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 12 0.10
80 48 0.39
83 64 0.52
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCTGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:71693520 original size:46 final size:46
Alignment explanation
Indices: 71693470--71693641 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
71693460 GGTTGAGCAT
*
71693470 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* * *
71693516 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC
* *
71693561 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *
71693609 CCGAGCTCGTTGATTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
71693642 GGGGCAGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.54
47 28 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:71693627 original size:93 final size:93
Alignment explanation
Indices: 71693466--71693636 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
71693456 GGATGGTTGA
* *
71693466 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71693531 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
71693559 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
71693624 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
71693637 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71693901 original size:19 final size:20
Alignment explanation
Indices: 71693866--71693903 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
71693856 ATAAGGTGGT
71693866 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
71693886 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
71693904 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:71697285 original size:138 final size:139
Alignment explanation
Indices: 71697036--71697316 Score: 492
Period size: 138 Copynumber: 2.0 Consensus size: 139
71697026 GGGCAAAATG
* *
71697036 TATTTTGCACTAAAGTGTTTTTTTGGGGTTAAATTTAATAATGTGATGATTAAATGAGTTAAATT
1 TATTTTGCAATAAAGTGTTTTTTTGGGGTTAAATTGAATAATGTGATGATTAAATGAGTTAAATT
*
71697101 TGATGCTATAGGTCAAGAAAGAAGAGGTTCTGACCTAGATCAGGGAAAGAACAAGGTTGTGGACT
66 TGATACTATAGGTCAAGAAAGAAGAGGTTCTGACCTAGATCAGGGAAAGAACAAGGTTGTGGACT
71697166 AAATCGAAC
131 AAATCGAAC
*
71697175 TATTTTGCAATAAAGTG-TTTTTTGGGGTTAAATTGAATAATGTGATGATTGAATGAGTTAAATT
1 TATTTTGCAATAAAGTGTTTTTTTGGGGTTAAATTGAATAATGTGATGATTAAATGAGTTAAATT
* *
71697239 TGATACTATAGGTCAAGACAGAAGAGGTTTTGACCTAGATCAGGGAAAGAACAAGGTTGTGGACT
66 TGATACTATAGGTCAAGAAAGAAGAGGTTCTGACCTAGATCAGGGAAAGAACAAGGTTGTGGACT
*
71697304 AAATTGAAC
131 AAATCGAAC
71697313 TATT
1 TATT
71697317 AGCCATTTTG
Statistics
Matches: 135, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
138 119 0.88
139 16 0.12
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (139 bp):
TATTTTGCAATAAAGTGTTTTTTTGGGGTTAAATTGAATAATGTGATGATTAAATGAGTTAAATT
TGATACTATAGGTCAAGAAAGAAGAGGTTCTGACCTAGATCAGGGAAAGAACAAGGTTGTGGACT
AAATCGAAC
Found at i:71703736 original size:49 final size:49
Alignment explanation
Indices: 71703657--71703783 Score: 175
Period size: 49 Copynumber: 2.6 Consensus size: 49
71703647 TGTTGTGTGT
* *
71703657 CAGTGTAAGACCTGTCTGGGACATGACATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * *
71703706 CAGTGTAAGACCTGTCTGGGACACGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* *
71703755 TAGTGTAAGACCTATCTGGGACATGGCAT
1 CAGTGTAAGACCTGTCTGGGACATGGCAT
71703784 AGATTTTGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:71713671 original size:61 final size:59
Alignment explanation
Indices: 71713603--71713773 Score: 163
Period size: 58 Copynumber: 2.9 Consensus size: 59
71713593 TTTTTATAAT
* *
71713603 ATTATATATTATGATTTTTTAATTCATATTTTAATAATAATTTTATTAAGAATGTTATTAA
1 ATTATATATTATGATTTTTTAATT-ATATTTTAATAATAATTTTATTAA-AATATGATTAA
* *
71713664 A-T-TATA-TATGATTTTATTAAATTATA-TTTAATAATAATTATGTTAAAATATGATTAA
1 ATTATATATTATGATTTT-TT-AATTATATTTTAATAATAATTTTATTAAAATATGATTAA
* * * * *
71713721 ATTATTTATTTTTATTTTTATTAA-AATATATTTAATAATAATCTTATTAAAAT
1 ATTATATATTATGA-TTTT-TTAATTATAT-TTTAATAATAATTTTATTAAAAT
71713774 TTAATAACAA
Statistics
Matches: 91, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
57 10 0.11
58 28 0.31
59 15 0.16
60 10 0.11
61 28 0.31
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (59 bp):
ATTATATATTATGATTTTTTAATTATATTTTAATAATAATTTTATTAAAATATGATTAA
Found at i:71713694 original size:58 final size:58
Alignment explanation
Indices: 71713607--71713773 Score: 187
Period size: 61 Copynumber: 2.8 Consensus size: 58
71713597 TATAATATTA
* *
71713607 TATATTATGATTTT-TT-AATTCATATTTTAATAATAATTTTATTAAGAATGTTATTAAAT
1 TATATTATGATTTTATTAAATT-ATA-TTTAATAATAATTTTATTAA-AATATGATTAAAT
* *
71713666 TATA-TATGATTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAAT
1 TATATTATGATTTTATTAAATTATATTTAATAATAATTTTATTAAAATATGATTAAAT
* * * *
71713723 TATTTATTTTTATTTTTATTAAAATATATTTAATAATAATCTTATTAAAAT
1 TA--TATTATGA-TTTTATTAAATTATATTTAATAATAATTTTATTAAAAT
71713774 TTAATAACAA
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
57 13 0.14
58 27 0.29
59 11 0.12
60 7 0.08
61 34 0.37
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (58 bp):
TATATTATGATTTTATTAAATTATATTTAATAATAATTTTATTAAAATATGATTAAAT
Found at i:71713963 original size:16 final size:15
Alignment explanation
Indices: 71713942--71713993 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
71713932 TAAATTATTG
*
71713942 ATTACAGCTCTATTCC
1 ATTACAACT-TATTCC
*
71713958 ATTACAACTTTATTCA
1 ATTACAAC-TTATTCC
71713974 ATTACAACATTATTCC
1 ATTACAAC-TTATTCC
71713990 ATTA
1 ATTA
71713994 TAGTGAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 30 0.97
17 1 0.03
ACGTcount: A:0.35, C:0.23, G:0.02, T:0.40
Consensus pattern (15 bp):
ATTACAACTTATTCC
Found at i:71714267 original size:27 final size:29
Alignment explanation
Indices: 71714237--71714292 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
71714227 TCACATATCT
* *
71714237 TTTAATATT-ATATTAT-TATATAATATA
1 TTTAATATTCATATAATATACATAATATA
*
71714264 TTTAATTTTCATATAATATACATAATATA
1 TTTAATATTCATATAATATACATAATATA
71714293 ATTCATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 8 0.33
28 6 0.25
29 10 0.42
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (29 bp):
TTTAATATTCATATAATATACATAATATA
Found at i:71715076 original size:13 final size:13
Alignment explanation
Indices: 71715058--71715083 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71715048 TCTTTTCTCT
71715058 TTTTTTATTTTTA
1 TTTTTTATTTTTA
71715071 TTTTTTATTTTTA
1 TTTTTTATTTTTA
71715084 CAGCAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:71722170 original size:13 final size:13
Alignment explanation
Indices: 71722154--71722183 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
71722144 ATTGAAAAGT
71722154 AATTCAGAAATTG
1 AATTCAGAAATTG
*
71722167 AATTGAGAAATTG
1 AATTCAGAAATTG
71722180 AATT
1 AATT
71722184 AATTATCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (13 bp):
AATTCAGAAATTG
Found at i:71724703 original size:46 final size:46
Alignment explanation
Indices: 71724528--71724703 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
71724518 TGTAACCCGC
* * *** *
71724528 CCATAAGCGAAGTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
71724574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
71724624 -C-TCA-CGAACTAGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
71724667 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71724704 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:71731748 original size:93 final size:93
Alignment explanation
Indices: 71731634--71731805 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71731624 CGCCCATAAG
* * *
71731634 CGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71731699 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
71731727 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71731792 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71731806 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71731802 original size:46 final size:46
Alignment explanation
Indices: 71731627--71731802 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
71731617 TGTAACCCGC
* * * *
71731627 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
71731673 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71731723 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71731766 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71731803 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71731821 original size:46 final size:46
Alignment explanation
Indices: 71731676--71731814 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
71731666 TTCGCATCCA
71731676 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
71731724 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
71731769 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
71731815 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:71738729 original size:20 final size:20
Alignment explanation
Indices: 71738706--71738745 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
71738696 AAATATATAC
71738706 TTGGAAAAGTTTTTTGCAAG
1 TTGGAAAAGTTTTTTGCAAG
71738726 TTGGAAAAGTTTTTTGCAAG
1 TTGGAAAAGTTTTTTGCAAG
71738746 AGTAGAGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (20 bp):
TTGGAAAAGTTTTTTGCAAG
Found at i:71739107 original size:20 final size:22
Alignment explanation
Indices: 71739075--71739117 Score: 56
Period size: 20 Copynumber: 2.0 Consensus size: 22
71739065 CTGTGTGTAG
71739075 ATTCTTGAAACAA-T-ATTTTA
1 ATTCTTGAAACAAGTAATTTTA
71739095 ATTCTT-AATACAAGTAATTTTA
1 ATTCTTGAA-ACAAGTAATTTTA
71739117 A
1 A
71739118 AATATATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 2 0.10
20 10 0.50
21 1 0.05
22 7 0.35
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (22 bp):
ATTCTTGAAACAAGTAATTTTA
Found at i:71744738 original size:68 final size:69
Alignment explanation
Indices: 71744629--71744776 Score: 253
Period size: 68 Copynumber: 2.1 Consensus size: 69
71744619 GTGTGGTACT
* *
71744629 GCCGTGTGTCCCCTGCACCTAAATTTTTTAGGTCAGAATGTATGGTAGCAAACACATCGGTAGAC
1 GCCGTGTGTCCCATGCACCTAAATTTTGTAGGTCAGAATGTATGGTAGCAAACACATCGGTAGAC
71744694 -ACG
66 AACG
*
71744697 GCCGTGTGTCCCATGCACCTAAATTTTGTAGGTCAGAATGTATGGTAGCAAACACATGGGTAGAC
1 GCCGTGTGTCCCATGCACCTAAATTTTGTAGGTCAGAATGTATGGTAGCAAACACATCGGTAGAC
71744762 ATACG
66 A-ACG
71744767 GCCGTGTGTC
1 GCCGTGTGTC
71744777 TCAACTCTGT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
68 62 0.83
70 13 0.17
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (69 bp):
GCCGTGTGTCCCATGCACCTAAATTTTGTAGGTCAGAATGTATGGTAGCAAACACATCGGTAGAC
AACG
Found at i:71745038 original size:20 final size:20
Alignment explanation
Indices: 71745013--71745064 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
71745003 CTGGTAAGGG
71745013 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
71745033 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
71745053 ACACGGGCGTGT
1 ACACGGGCGTGT
71745065 GCATTGCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.12
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:71746583 original size:47 final size:48
Alignment explanation
Indices: 71746508--71746639 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 48
71746498 GTAACCCGCC
*
71746508 CATAAGCGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
71746557 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
71746600 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 C-ATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
71746640 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
44 1 0.01
45 2 0.03
46 29 0.41
47 29 0.41
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (48 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:71746655 original size:46 final size:44
Alignment explanation
Indices: 71746515--71746655 Score: 117
Period size: 46 Copynumber: 3.0 Consensus size: 44
71746505 GCCCATAAGC
* *
71746515 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * * *
71746562 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCTAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
71746608 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
71746654 GA
1 GA
71746656 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 33 0.43
47 29 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:71751538 original size:40 final size:40
Alignment explanation
Indices: 71751392--71751601 Score: 223
Period size: 40 Copynumber: 5.3 Consensus size: 40
71751382 CATTTGAATG
* * *
71751392 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
71751432 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* *
71751472 TTAT-CTGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
71751510 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
71751550 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
71751590 ATATCC-GGCTAA
1 ATATCCGGGCTAA
71751602 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
38 21 0.14
39 27 0.18
40 102 0.68
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:71759571 original size:40 final size:40
Alignment explanation
Indices: 71759516--71759726 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
71759506 ATTTGAATGA
*
71759516 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
71759556 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
71759596 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
71759636 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
71759676 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
71759716 TATCC-GGCTAA
1 TATCCGGGCTAA
71759727 ATTCGAAGAA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:71765551 original size:46 final size:46
Alignment explanation
Indices: 71765484--71765604 Score: 206
Period size: 46 Copynumber: 2.6 Consensus size: 46
71765474 GCCCACAAGC
* * *
71765484 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGT
*
71765530 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGT
71765576 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
71765605 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGT
Found at i:71765623 original size:46 final size:46
Alignment explanation
Indices: 71765484--71765623 Score: 144
Period size: 46 Copynumber: 3.0 Consensus size: 46
71765474 GCCCACAAGC
* ** *
71765484 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-A-CATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* * * *
71765530 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
71765576 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
71765622 GA
1 GA
71765624 CATGTCACTT
Statistics
Matches: 76, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
44 9 0.12
46 63 0.83
48 1 0.01
50 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:71780304 original size:13 final size:13
Alignment explanation
Indices: 71780286--71780310 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71780276 ATGATTTAAG
71780286 TATGGATGTATGC
1 TATGGATGTATGC
71780299 TATGGATGTATG
1 TATGGATGTATG
71780311 TTATTTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.32, T:0.40
Consensus pattern (13 bp):
TATGGATGTATGC
Found at i:71792592 original size:22 final size:22
Alignment explanation
Indices: 71792567--71792609 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
71792557 AATAAATAAA
*
71792567 GATAATTAAAGAGAAAAGCTAG
1 GATAAATAAAGAGAAAAGCTAG
71792589 GATAAATAAAGAGAAAAGCTA
1 GATAAATAAAGAGAAAAGCTA
71792610 AAATTAAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.58, C:0.05, G:0.21, T:0.16
Consensus pattern (22 bp):
GATAAATAAAGAGAAAAGCTAG
Found at i:71793447 original size:98 final size:98
Alignment explanation
Indices: 71793253--71793448 Score: 268
Period size: 99 Copynumber: 2.0 Consensus size: 98
71793243 TCTTTTTTTC
* * * *
71793253 TTTATTATTATTGCTTAAGAATACATTGAACTTTTTGACACGAAGAGATATGAAAGCCAAGCACC
1 TTTATTATTATTGCTTAAGAACACATTGAACCTTTTGACACAAAGAGAGATGAAAGCCAAGCACC
71793318 CCACTCCAGTTACTCAGCCCAACATACTCCTAA
66 CCACTCCAGTTACTCAGCCCAACATACTCCTAA
* * * * * *
71793351 TTTATTATATTTTTCTTAAGAACATATTGAGCCTTTTGACGCAAAGAGAGATGACAGCCAAGCA-
1 TTTATTAT-TATTGCTTAAGAACACATTGAACCTTTTGACACAAAGAGAGATGAAAGCCAAGCAC
* *
71793415 CCCACTCCGGTTACTCAGCCCAACATATTCCTAA
65 CCCACTCCAGTTACTCAGCCCAACATACTCCTAA
71793449 AAATAATTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.47
99 45 0.53
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.29
Consensus pattern (98 bp):
TTTATTATTATTGCTTAAGAACACATTGAACCTTTTGACACAAAGAGAGATGAAAGCCAAGCACC
CCACTCCAGTTACTCAGCCCAACATACTCCTAA
Found at i:71795691 original size:16 final size:16
Alignment explanation
Indices: 71795670--71795702 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
71795660 TTTGGGGTGC
71795670 TAAAAAATGGCACCGG
1 TAAAAAATGGCACCGG
71795686 TAAAAAATGGCACCGG
1 TAAAAAATGGCACCGG
71795702 T
1 T
71795703 GTGTGTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (16 bp):
TAAAAAATGGCACCGG
Found at i:71796038 original size:10 final size:9
Alignment explanation
Indices: 71796019--71796080 Score: 51
Period size: 10 Copynumber: 6.9 Consensus size: 9
71796009 TCAATATCCA
71796019 AAAATAAAT
1 AAAATAAAT
71796028 --AATAAAT
1 AAAATAAAT
*
71796035 AATA-AAAT
1 AAAATAAAT
71796043 AAAATAAAAT
1 AAAAT-AAAT
71796053 AAAATTAAGA-
1 AAAA-TAA-AT
71796063 AAAATAAAT
1 AAAATAAAT
71796072 AAAAATAAA
1 -AAAATAAA
71796081 AATTGGGTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
7 7 0.16
8 8 0.19
9 4 0.09
10 22 0.51
11 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:71796044 original size:15 final size:14
Alignment explanation
Indices: 71796024--71796079 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
71796014 ATCCAAAAAT
71796024 AAATAATAAATAATA
1 AAATAA-AAATAATA
*
71796039 AAATAAAATAAAATA
1 AAATAAAA-ATAATA
71796054 AAATTAAGAAA-AAT-
1 AAA-TAA-AAATAATA
71796068 AAATAAAAATAA
1 AAATAAAAATAA
71796080 AAATTGGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
12 3 0.08
13 5 0.14
14 5 0.14
15 17 0.47
16 4 0.11
17 2 0.06
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (14 bp):
AAATAAAAATAATA
Found at i:71796045 original size:5 final size:5
Alignment explanation
Indices: 71796035--71796081 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
71796025 AATAATAAAT
*
71796035 AATAA AATAA AATAA AATAA AATTAA GA-AA AAT-A AATAAA AATAA AA
1 AATAA AATAA AATAA AATAA AA-TAA AATAA AATAA AAT-AA AATAA AA
71796082 ATTGGGTTGC
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 7 0.19
5 21 0.58
6 8 0.22
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:71796046 original size:24 final size:23
Alignment explanation
Indices: 71796018--71796079 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 23
71796008 ATCAATATCC
71796018 AAAAATAAATAATAAATAATAAA
1 AAAAATAAATAATAAATAATAAA
* *
71796041 ATAAAAT-AA-AATAAA-ATTAAG
1 A-AAAATAAATAATAAATAATAAA
71796062 AAAAATAAATAA-AAATAA
1 AAAAATAAATAATAAATAA
71796080 AAATTGGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 5 0.16
21 10 0.31
22 9 0.28
23 3 0.09
24 5 0.16
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAAATAAATAATAAATAATAAA
Found at i:71796052 original size:25 final size:23
Alignment explanation
Indices: 71796018--71796083 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
71796008 ATCAATATCC
*
71796018 AAAAAT-AAATAATAAATAATAAA
1 AAAAATAAAATAA-AAATAAGAAA
*
71796041 ATAAAATAAAATAAAATTAAGAAA
1 A-AAAATAAAATAAAAATAAGAAA
71796065 AATAAATAAAAATAAAAAT
1 AA-AAAT-AAAATAAAAAT
71796084 TGGGTTGCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.06
24 18 0.50
25 16 0.44
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAAATAAAATAAAAATAAGAAA
Found at i:71796076 original size:20 final size:21
Alignment explanation
Indices: 71796018--71796082 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 21
71796008 ATCAATATCC
71796018 AAAAATAAATAATAAATAATAAA
1 AAAAATAAATAA-AAAT-ATAAA
*
71796041 ATAAAATAAA-ATAAAAT-TAAG
1 A-AAAATAAATA-AAAATATAAA
71796062 AAAAATAAATAAAAATA-AAA
1 AAAAATAAATAAAAATATAAA
71796082 A
1 A
71796083 TTGGGTTGCC
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
20 16 0.44
21 5 0.14
23 6 0.17
24 9 0.25
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAATAAATAAAAATATAAA
Found at i:71798133 original size:46 final size:46
Alignment explanation
Indices: 71798081--71798171 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
71798071 TATATATACA
* * * *
71798081 CATCTCATACATATCTCACATTAGCCATTTGGTTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
71798127 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
71798172 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:71798356 original size:22 final size:22
Alignment explanation
Indices: 71798329--71798404 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
71798319 GTTCACATTC
71798329 ATCACATTAGCCATTCGGCCTT
1 ATCACATTAGCCATTCGGCCTT
** * *
71798351 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TAGCCA--TTCGGCCTT
*
71798375 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTAGCCATTCGGCCTT
71798398 ATCACAT
1 ATCACAT
71798405 ATATGCATGT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 17 0.43
23 7 0.17
24 6 0.15
25 10 0.25
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTAGCCATTCGGCCTT
Found at i:71798676 original size:47 final size:47
Alignment explanation
Indices: 71798189--71798674 Score: 687
Period size: 47 Copynumber: 10.5 Consensus size: 47
71798179 TCCACGTTCG
* * ** *
71798189 TCACAATGGCCATTCTGCCTTATCACATGTATGCATGTTCACATTAA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * * *
71798236 TCACATTGGCCATTCGGCCTTATCACATATATGCACGTTCATATTCT
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
71798283 TTACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
71798330 TCACATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
71798377 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
71798424 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
71798471 TCACACTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
71798518 TCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
71798565 TCACATTTGCCATTCGGCCTTAGCACACA-A---ATG--AACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
71798606 TCACATTTGCCATTCGGCCTTAGCACACAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
71798653 TCACATTTGCCATTCGGCCTTA
1 TCACATTGGCCATTCGGCCTTA
71798675 GCTCATGTAT
Statistics
Matches: 401, Mismatches: 32, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
41 36 0.09
42 1 0.00
43 3 0.01
45 3 0.01
46 1 0.00
47 357 0.89
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:71802488 original size:40 final size:40
Alignment explanation
Indices: 71802423--71802901 Score: 607
Period size: 40 Copynumber: 12.0 Consensus size: 40
71802413 GAATACACAT
* * * *
71802423 CACCGGCATGAATGCTCTTCAGGACTTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * **
71802463 CACTAGTACGAATGCTCTTCGGGACTTAACCCTAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
71802503 CTCCAACACGAATGCTCTTCGAGACTTAGCCCGGATATGA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
71802543 CACCAGCACGTATGCTCTTCGGGACTTAGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
71802583 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGAATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
71802623 CACCAGCACGTATGCTCTTCGGGACTTAGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
71802663 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
71802703 CTCTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
71802743 CACCAGCACGTATGCTCTTCGGGATTTAACCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
71802783 CACTAGCACGACTGCTCTTTGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
71802823 CACTAGCACGAATGCTTTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
71802863 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
71802902 TCATACTGAA
Statistics
Matches: 382, Mismatches: 57, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 382 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:71804396 original size:46 final size:46
Alignment explanation
Indices: 71804344--71804434 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
71804334 TATATATACA
* * * *
71804344 CATCTCATACATATCTCACATTAGCCATTTGGTTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
71804390 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
71804435 ATACACATCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.31, G:0.07, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:71804515 original size:94 final size:94
Alignment explanation
Indices: 71804414--71804927 Score: 713
Period size: 94 Copynumber: 5.5 Consensus size: 94
71804404 TTCGCATTAA
* ** * * * *
71804414 CCATTCGGCTTTCCCACATATATACACATCCACATTCATCACATTGGTCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** *
71804479 TGTATGCATGTTCACATTTATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* * *
71804508 CCATTCGGCCTTATCACATATATGCACGTTCATATTCTTCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
71804573 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* *
71804602 CCATTCGACCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
71804667 CATATGCATGTTCATATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* * *
71804696 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * *
71804761 TATATACATGTTCACATTTATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* * * * * *
71804790 CCATTCGGCCTTAGCACACAAATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACA
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
71804855 CAAATGCATGTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * * *
71804884 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACAT
71804928 AAAATCCTAA
Statistics
Matches: 378, Mismatches: 42, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 378 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:71804713 original size:22 final size:22
Alignment explanation
Indices: 71804686--71804761 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
71804676 GTTCATATTC
71804686 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
71804708 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
71804732 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
71804755 ATCACAT
1 ATCACAT
71804762 ATATACATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:71804898 original size:47 final size:47
Alignment explanation
Indices: 71804444--71804896 Score: 717
Period size: 47 Copynumber: 9.6 Consensus size: 47
71804434 TATACACATC
* * **
71804444 CACATTCATCACATTGGTCATTCTGCCTTATCACATGTATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
71804491 CACATTTATCACATTGGCCATTCGGCCTTATCACATATATGCACGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
71804538 CATATTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
71804585 CACATTCATCACATTGGCCATTCGACCTTATCACATATATACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
71804632 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
*
71804679 CATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
71804726 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* * *
71804773 CACATTTATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
* *
71804820 CACATTCATCACATTGGCCATTCGGCCTTAGCACACAAATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
*
71804867 CACATTCATCACATTTGCCATTCGGCCTTA
1 CACATTCATCACATTGGCCATTCGGCCTTA
71804897 GCTCATGTAT
Statistics
Matches: 377, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 377 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTT
Found at i:71804959 original size:141 final size:136
Alignment explanation
Indices: 71804444--71804952 Score: 462
Period size: 141 Copynumber: 3.6 Consensus size: 136
71804434 TATACACATC
* * * * * ***
71804444 CACATTCATCACATTGGTCATTCTGCCTTATCACATGTATGCATGTTCACATTTATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATAATC
* ** * * *
71804509 CATTCGGCCTTATCACATATATGCACGTTCATATTCTTCACATTGGCCATTCGGCCTTATCACAC
66 CAATC-AACATAT-A-A-AT-TGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACAC
71804574 ATATGCATGTT
126 ATATGCATGTT
* ***
71804585 CACATTCATCACATTGGCCATTCGACCTTATCACATATATACATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATAATC
* ** *
71804650 CATTCGGCCTTATCACACATATGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACAC
66 CAATC-AACATAT-A-A-AT-TGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACAC
71804715 ATATGCATGTT
126 ATATGCATGTT
* ***
71804726 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTTATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATAATC
* * * * * *
71804791 CATTCGGCCTTAGCACACAAA-TGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAGCACA
66 CAAT----C--AACATATAAATTGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACA
*
71804855 CAAATGCATGTT
125 CATATGCATGTT
* * * * ** *
71804867 CACATTCATCACATTTGCCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACATAAAA
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT--AA
*
71804932 TCCTAAATCAAAATATAAATT
64 TCC--AATCAACATATAAATT
71804953 TTCATGTATT
Statistics
Matches: 322, Mismatches: 36, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
139 6 0.02
140 1 0.00
141 305 0.95
143 3 0.01
144 1 0.00
145 4 0.01
146 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (136 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATAATC
CAATCAACATATAAATTGCATGTTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATG
CATGTT
Found at i:71813134 original size:40 final size:40
Alignment explanation
Indices: 71813103--71813230 Score: 184
Period size: 40 Copynumber: 3.2 Consensus size: 40
71813093 GGACTAAGAT
*
71813103 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTC
71813143 CCGAAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTC
1 CCGAAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTC
* * * *** *
71813183 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTC
71813223 CCGAAGGC
1 CCGAAGGC
71813231 ATTGAATGAG
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCCTTTGTGCGAGATACCAATTCCGGGTTAAGTC
Found at i:71813254 original size:39 final size:39
Alignment explanation
Indices: 71813130--71813280 Score: 117
Period size: 40 Copynumber: 3.8 Consensus size: 39
71813120 AGATACTAAT
* ** * * *
71813130 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAC-CAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAG-TTCTAAAA
** *
71813170 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
71813210 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
71813250 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
71813281 GAGCTATATC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:71820291 original size:86 final size:85
Alignment explanation
Indices: 71820137--71820296 Score: 205
Period size: 86 Copynumber: 1.9 Consensus size: 85
71820127 GACAAGTACA
* ** * * *
71820137 ATGCCGATGTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTCTGTTCCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACATAATTCAGAATCGATGCCTCTGTCCCAGACACGGT
*
71820202 CTTATACGAAAATAGATACG
66 CTTACACGAAAATAGATACG
* * *
71820222 ATGCCGATGTCCGAGACATGGTCTTACACATAAATTTCA-AATCGATGCTTGTGTCCCAGACACG
1 ATGCCGATGTCCCAGACATGGTCTTACACAT-AA-TTCAGAATCGATGCCTCTGTCCCAGACACG
71820286 GTCTTACACGA
64 GTCTTACACGA
71820297 TAATTCGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 27 0.43
86 32 0.51
87 4 0.06
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACATAATTCAGAATCGATGCCTCTGTCCCAGACACGGT
CTTACACGAAAATAGATACG
Found at i:71825493 original size:10 final size:10
Alignment explanation
Indices: 71825470--71825514 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
71825460 ATTCTAGAAA
71825470 ATAAATACAA-
1 ATAAATA-AAG
71825480 ATAAATAAAG
1 ATAAATAAAG
*
71825490 ATAATTAAAG
1 ATAAATAAAG
71825500 ATAAATAAAG
1 ATAAATAAAG
71825510 ATAAA
1 ATAAA
71825515 AGCTAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
9 2 0.06
10 30 0.94
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:71826584 original size:7 final size:7
Alignment explanation
Indices: 71826583--71826633 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
71826573 TTTTTAATTT
71826583 TTTAAATA
1 TTTA-ATA
71826591 TTT-ATA
1 TTTAATA
*
71826597 TTATATTA
1 TT-TAATA
71826605 TTTTAATA
1 -TTTAATA
71826613 TTTAATA
1 TTTAATA
71826620 TTTAATA
1 TTTAATA
71826627 TTTAATA
1 TTTAATA
71826634 ATTTTATGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 5 0.13
7 22 0.58
8 9 0.24
9 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:71826615 original size:22 final size:22
Alignment explanation
Indices: 71826575--71826633 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
71826565 TCATACTATT
*
71826575 TTTAATTTTTTAAATATTT-ATA
1 TTTAATATTTT-AATATTTAATA
*
71826597 TTATATTATTTTAATATTTAATA
1 TT-TAATATTTTAATATTTAATA
71826620 TTTAATA-TTTAATA
1 TTTAATATTTTAATA
71826634 ATTTTATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 7 0.22
22 13 0.41
23 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTAATATTTTAATATTTAATA
Found at i:71828378 original size:22 final size:22
Alignment explanation
Indices: 71828350--71828394 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
71828340 AAAAAATTAC
71828350 TTTTTTTACTATTTTGTTGCTA
1 TTTTTTTACTATTTTGTTGCTA
*
71828372 TTTTTTTACTGTTTTGTTGCTA
1 TTTTTTTACTATTTTGTTGCTA
71828394 T
1 T
71828395 GTTCTTGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.11, T:0.69
Consensus pattern (22 bp):
TTTTTTTACTATTTTGTTGCTA
Found at i:71835160 original size:25 final size:26
Alignment explanation
Indices: 71835128--71835176 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
71835118 TTGTTAGTAC
71835128 TCTTAAAAA-ATAAAAATAAAATTAT
1 TCTTAAAAATATAAAAATAAAATTAT
*
71835153 TCTTAAAAATTTAAAAATAAAATT
1 TCTTAAAAATATAAAAATAAAATT
71835177 TTAAATTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (26 bp):
TCTTAAAAATATAAAAATAAAATTAT
Found at i:71852721 original size:11 final size:12
Alignment explanation
Indices: 71852696--71852722 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
71852686 TGTTTTGCCG
71852696 AAAATAAAAGAA
1 AAAATAAAAGAA
71852708 AAAATAAAAGAA
1 AAAATAAAAGAA
71852720 AAA
1 AAA
71852723 GAGCTTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAATAAAAGAA
Found at i:71864955 original size:46 final size:45
Alignment explanation
Indices: 71864888--71865052 Score: 179
Period size: 46 Copynumber: 3.6 Consensus size: 45
71864878 CGCCCCTAAG
* *
71864888 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCATCCATAAA
* * **
71864934 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--GCTTAGCATCCAT-AAA
* * * *
71864981 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTAGCATCCATAAA
*
71865027 TGAACTCAGACTCAACTCAACGAGTT
1 TGAACTCGGACTCAACTCAACGAGTT
71865053 TGGATGCTCA
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 59 0.60
47 36 0.37
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTAGCATCCATAAA
Found at i:71864999 original size:93 final size:93
Alignment explanation
Indices: 71864889--71865060 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
71864879 GCCCCTAAGT
* * *
71864889 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
71864954 CGAGTTCGGATGCTTAGTTACATCTCAC
66 CGAGTTCGGATGCTTAGTTACATCTCAC
* * *
71864982 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
71865047 CGAGTTTGGATGCT
66 CGAGTTCGGATGCT
71865061 CAACCATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCTTAGTTACATCTCAC
Found at i:71865513 original size:30 final size:30
Alignment explanation
Indices: 71865479--71865538 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
71865469 ATTTAATGCG
71865479 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
71865509 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
71865539 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:71869464 original size:26 final size:26
Alignment explanation
Indices: 71869435--71869494 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
71869425 TCCCTTTGAA
* * *
71869435 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
71869461 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
71869489 CCATTC
1 TCATTC
71869495 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:71869480 original size:28 final size:28
Alignment explanation
Indices: 71869449--71869520 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
71869439 TCGATATTTT
*
71869449 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
71869477 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
71869505 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
71869521 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:71874516 original size:28 final size:28
Alignment explanation
Indices: 71874482--71874636 Score: 141
Period size: 28 Copynumber: 5.5 Consensus size: 28
71874472 AACCGATCTT
**
71874482 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*** * * *
71874510 GCACACACAGTGCCTCAACAACTGATCTT
1 GCACACACAGTG-CTCAGTTACGGAACTC
*
71874539 GCACACACAGTGCTCAGTTACGAAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*** *
71874567 GCACACACAGTGCCTCAACAATC-GATCTC
1 GCACACACAGTG-CTCAGTTA-CGGAACTC
*
71874596 GCACACACAGTGCTCGGTTACGGAACTC
1 GCACACACAGTGCTCAGTTACGGAACTC
*
71874624 ACACACACAGTGC
1 GCACACACAGTGC
71874637 CTATGTTCAC
Statistics
Matches: 97, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 1 0.01
28 54 0.56
29 41 0.42
30 1 0.01
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.18
Consensus pattern (28 bp):
GCACACACAGTGCTCAGTTACGGAACTC
Found at i:71874542 original size:57 final size:57
Alignment explanation
Indices: 71874452--71874638 Score: 270
Period size: 57 Copynumber: 3.2 Consensus size: 57
71874442 GATCTCATTT
* *
71874452 CACACACTTAGTGCC-CTAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCTC-AACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
* *
71874511 CACACACAGTGCCTCAACAACTGATCTTGCACACACAGTGCTCAGTTACGAAACTCG
1 CACACACAGTGCCTCAACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
* *
71874568 CACACACAGTGCCTCAACAA-TCGATCTCGCACACACAGTGCTCGGTTACGGAACTCA
1 CACACACAGTGCCTCAACAACT-GATCTTGCACACACAGTGCTCGGTTACGGAACTCG
71874625 CACACACAGTGCCT
1 CACACACAGTGCCT
71874639 ATGTTCACTT
Statistics
Matches: 118, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
56 1 0.01
57 109 0.92
58 1 0.01
59 7 0.06
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.19
Consensus pattern (57 bp):
CACACACAGTGCCTCAACAACTGATCTTGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:71874596 original size:29 final size:28
Alignment explanation
Indices: 71874507--71874608 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 28
71874497 GGTTACGGAA
71874507 CTCGCACACACAGTGCCTCAACAACTGAT
1 CTCGCACACACAGTGCCTCAACAAC-GAT
* *** *
71874536 CTTGCACACACAGTG-CTCAGTTACGAAA
1 CTCGCACACACAGTGCCTCAACAACG-AT
71874564 CTCGCACACACAGTGCCTCAACAATCGAT
1 CTCGCACACACAGTGCCTCAACAA-CGAT
71874593 CTCGCACACACAGTGC
1 CTCGCACACACAGTGC
71874609 TCGGTTACGG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 21 0.35
29 36 0.60
30 2 0.03
ACGTcount: A:0.30, C:0.36, G:0.16, T:0.18
Consensus pattern (28 bp):
CTCGCACACACAGTGCCTCAACAACGAT
Found at i:71876645 original size:28 final size:28
Alignment explanation
Indices: 71876614--71876684 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
71876604 CGATATTTTT
*
71876614 CACACTAAGTGTCATTCTCAATATATCG
1 CACACTAAGTGCCATTCTCAATATATCG
*
71876642 CACACTAAGTGCCATTCTCAATATTTCG
1 CACACTAAGTGCCATTCTCAATATATCG
* * *
71876670 TACACTGAGTACCAT
1 CACACTAAGTGCCAT
71876685 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCAATATATCG
Found at i:71880992 original size:30 final size:30
Alignment explanation
Indices: 71880958--71881014 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
71880948 TATGAGAATT
*
71880958 GGGGT-AAAAGTGAAAATATGTGAAAATTTA
1 GGGGTCAAAA-TGAAAATATGTAAAAATTTA
*
71880988 GGGGTCAAAATGAAAATTTGTAAAAAT
1 GGGGTCAAAATGAAAATATGTAAAAAT
71881015 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.25, T:0.26
Consensus pattern (30 bp):
GGGGTCAAAATGAAAATATGTAAAAATTTA
Found at i:71885035 original size:26 final size:26
Alignment explanation
Indices: 71885005--71885057 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
71884995 TTCCATGATC
71885005 TTAATGTTAGACGAATGTGTTGTCAG
1 TTAATGTTAGACGAATGTGTTGTCAG
71885031 TTAATGTTAGACGAATGTGTTGTCAG
1 TTAATGTTAGACGAATGTGTTGTCAG
71885057 T
1 T
71885058 CTAAATGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.40
Consensus pattern (26 bp):
TTAATGTTAGACGAATGTGTTGTCAG
Found at i:71885388 original size:15 final size:15
Alignment explanation
Indices: 71885340--71885422 Score: 76
Period size: 15 Copynumber: 5.5 Consensus size: 15
71885330 GTATTATAAT
*
71885340 TTGGATTTCCTTATC
1 TTGGATTTCTTTATC
*
71885355 ATGGATTTCTTTATC
1 TTGGATTTCTTTATC
*
71885370 TTGGATTTCTTTATT
1 TTGGATTTCTTTATC
** ***
71885385 TTGGGCTTCTCCGTC
1 TTGGATTTCTTTATC
* *
71885400 TCGGATTTCTCTATC
1 TTGGATTTCTTTATC
71885415 TTGGATTT
1 TTGGATTT
71885423 TCTGATTATC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 52 1.00
ACGTcount: A:0.12, C:0.18, G:0.17, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:71890726 original size:34 final size:34
Alignment explanation
Indices: 71890687--71890756 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
71890677 AGAGTTTACT
71890687 TTGAGAAAATCTATTTTTTGCAAGCTTGTTATAC
1 TTGAGAAAATCTATTTTTTGCAAGCTTGTTATAC
*
71890721 TTGAGAAAATCTATTTTTTGCGAGCTTGTTATAC
1 TTGAGAAAATCTATTTTTTGCAAGCTTGTTATAC
71890755 TT
1 TT
71890757 TTCACATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (34 bp):
TTGAGAAAATCTATTTTTTGCAAGCTTGTTATAC
Found at i:71891308 original size:69 final size:70
Alignment explanation
Indices: 71891228--71891421 Score: 218
Period size: 69 Copynumber: 2.8 Consensus size: 70
71891218 GCTTTTTTCC
* * * *
71891228 TGCGAGCCTTAGCACGACAATTAGGAGCTTTGTTCTCGCTAACTTTGTTGGAGGTTGTGACTC-T
1 TGCGAGCCTTAGCACAACAATTAGGAGCTTTGTTCTCGCTAACTGTGTTGGAGGCTGCGACTCTT
71891292 T-CACT
66 TGCA-T
* * * *
71891297 TGCGAGTCTTAGCACAACAATTGGGAACTTTGCTT-TTGCTAACTGTGTTGGAGGCTGCGACTCT
1 TGCGAGCCTTAGCACAACAATTAGGAGCTTTG-TTCTCGCTAACTGTGTTGGAGGCTGCGACTCT
71891361 TTGCAT
65 TTGCAT
* * * *
71891367 T-TGAGCCTTAGCACAACAATTAGGAG-TTTTTCTCTCGTTAACTGTGTTAGAGGCT
1 TGCGAGCCTTAGCACAACAATTAGGAGCTTTGT-TCTCGCTAACTGTGTTGGAGGCT
71891422 TTGGCTTTTT
Statistics
Matches: 104, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
67 1 0.01
68 4 0.04
69 91 0.88
70 6 0.06
71 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (70 bp):
TGCGAGCCTTAGCACAACAATTAGGAGCTTTGTTCTCGCTAACTGTGTTGGAGGCTGCGACTCTT
TGCAT
Found at i:71891534 original size:66 final size:67
Alignment explanation
Indices: 71891448--71891599 Score: 171
Period size: 66 Copynumber: 2.3 Consensus size: 67
71891438 GAACCTTAAG
* *
71891448 ACGATAGCTAGGAGCTTTGCTATCACTAACTATGCTGGA-GCCGCGACTCTTCGCCTACGAGCCT
1 ACGAAAGCTAGGAGCTTTGCTATCACTAACTATGCTGGAGGCCGCGACTCTTCGCCTAAGAGCCT
71891512 TA
66 TA
* * * * * * * *
71891514 ACGAAAGCTTGGAGCTTTGCTCTCACTATCTGTTCTGGAGGCTGTGGCTCTTCGCCTAAGAGCCT
1 ACGAAAGCTAGGAGCTTTGCTATCACTAACTATGCTGGAGGCCGCGACTCTTCGCCTAAGAGCCT
*
71891579 TCGC
66 T--A
*
71891583 ACGACAGCTAGGAGCTT
1 ACGAAAGCTAGGAGCTT
71891600 CACTTTCGCT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
66 33 0.47
67 22 0.31
69 15 0.21
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (67 bp):
ACGAAAGCTAGGAGCTTTGCTATCACTAACTATGCTGGAGGCCGCGACTCTTCGCCTAAGAGCCT
TA
Found at i:71894438 original size:21 final size:21
Alignment explanation
Indices: 71894414--71894520 Score: 87
Period size: 21 Copynumber: 5.1 Consensus size: 21
71894404 TTCTATTTAG
71894414 CTCTTTCGAGCTTT-TGTTAAA
1 CTCTTTCGAG-TTTCTGTTAAA
* *
71894435 CTCTTAT-GAGTTTCTGTTTAG
1 CTCTT-TCGAGTTTCTGTTAAA
* *
71894456 CTCTTACGAGCTTTC-GTTCAA
1 CTCTTTCGAG-TTTCTGTTAAA
* *
71894477 CTCTTTTGAGTTTCTGTTAAG
1 CTCTTTCGAGTTTCTGTTAAA
*
71894498 CTCTTAT-GAGTTTCTGTTCAA
1 CTCTT-TCGAGTTTCTGTTAAA
71894519 CT
1 CT
71894521 TTTATGGGCT
Statistics
Matches: 69, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
20 7 0.10
21 56 0.81
22 6 0.09
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.48
Consensus pattern (21 bp):
CTCTTTCGAGTTTCTGTTAAA
Found at i:71894455 original size:42 final size:42
Alignment explanation
Indices: 71894403--71894555 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 42
71894393 CGTGTTTTAC
* *
71894403 TTTCTATTTAGCTCTTTCGAGCTTTTGTTAAACTCTTATGAG
1 TTTCTGTTTAGCTCTTTCGAGCTTTTGTTCAACTCTTATGAG
* * *
71894445 TTTCTGTTTAGCTCTTACGAGCTTTCGTTCAACTCTTTTGAG
1 TTTCTGTTTAGCTCTTTCGAGCTTTTGTTCAACTCTTATGAG
* * *
71894487 TTTCTGTTAAGCTCTTAT-GAG-TTTCTGTTCAACTTTTATGGG
1 TTTCTGTTTAGCTCTT-TCGAGCTTT-TGTTCAACTCTTATGAG
* *
71894529 CTTCTGTTCAG--CTTTCGAGCTTTTGTT
1 TTTCTGTTTAGCTCTTTCGAGCTTTTGTT
71894556 GGCGTATTTG
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.01
40 10 0.11
41 6 0.06
42 77 0.82
ACGTcount: A:0.15, C:0.18, G:0.17, T:0.50
Consensus pattern (42 bp):
TTTCTGTTTAGCTCTTTCGAGCTTTTGTTCAACTCTTATGAG
Found at i:71894525 original size:21 final size:21
Alignment explanation
Indices: 71894428--71894538 Score: 118
Period size: 21 Copynumber: 5.3 Consensus size: 21
71894418 TTCGAGCTTT
*
71894428 TGTTAAACTCTTATGAGTTTC
1 TGTTCAACTCTTATGAGTTTC
* * *
71894449 TGTTTAGCTCTTACGAGCTTTC
1 TGTTCAACTCTTATGAG-TTTC
*
71894471 -GTTCAACTCTTTTGAGTTTC
1 TGTTCAACTCTTATGAGTTTC
71894491 TGTT-AAGCTCTTATGAGTTTC
1 TGTTCAA-CTCTTATGAGTTTC
* * *
71894512 TGTTCAACTTTTATGGGCTTC
1 TGTTCAACTCTTATGAGTTTC
71894533 TGTTCA
1 TGTTCA
71894539 GCTTTCGAGC
Statistics
Matches: 75, Mismatches: 11, Indels: 8
0.80 0.12 0.09
Matches are distributed among these distances:
20 6 0.08
21 63 0.84
22 6 0.08
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (21 bp):
TGTTCAACTCTTATGAGTTTC
Found at i:71894538 original size:63 final size:63
Alignment explanation
Indices: 71894414--71894555 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 63
71894404 TTCTATTTAG
* *
71894414 CTCTTTCGAGCTTTTGTTAAACTCTTATGAGTTTCTGTTTAGCTCTTACGAGCTTTCGTTCAA
1 CTCTTTCGAGCTTTTGTTAAACTCTTATGAGTTTCTGTTCAACTCTTACGAGCTTTCGTTCAA
* * * * *
71894477 CTCTTTTGAG-TTTCTGTTAAGCTCTTATGAGTTTCTGTTCAACTTTTATGGGC-TTCTGTTC-A
1 CTCTTTCGAGCTTT-TGTTAAACTCTTATGAGTTTCTGTTCAACTCTTACGAGCTTTC-GTTCAA
*
71894539 -GCTTTCGAGCTTTTGTT
1 CTCTTTCGAGCTTTTGTT
71894556 GGCGTATTTG
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
61 11 0.16
62 10 0.15
63 46 0.69
ACGTcount: A:0.15, C:0.19, G:0.18, T:0.49
Consensus pattern (63 bp):
CTCTTTCGAGCTTTTGTTAAACTCTTATGAGTTTCTGTTCAACTCTTACGAGCTTTCGTTCAA
Found at i:71905708 original size:27 final size:27
Alignment explanation
Indices: 71905678--71905769 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
71905668 ATTACCAAAG
71905678 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
**
71905705 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * * *
71905732 TACCCTTGATTTACACAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
71905759 TACCCTCGATT
1 TACCCTCGATT
71905770 GTGAAATTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:71905831 original size:27 final size:27
Alignment explanation
Indices: 71905801--71905900 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
71905791 TATAGGGTAG
71905801 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
71905828 AATTACCAAAAATACCACTGGTTTGTGA
1 AATTACC-AAAATACCCCTAGTTTGTAA
* * *
71905856 AATTACCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
71905883 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
71905901 GATTTACACA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.05
27 29 0.48
28 28 0.47
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:71905905 original size:27 final size:27
Alignment explanation
Indices: 71905801--71905939 Score: 113
Period size: 27 Copynumber: 5.1 Consensus size: 27
71905791 TATAGGGTAG
*
71905801 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTATAA
* * * *
71905828 AATTACCAAAAATACCACTGGTTTGTGA
1 AATTACC-AAAATACCCCTGATTTATAA
* *
71905856 AATTACCGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-GATTTATAA
* *
71905883 AATTACCAAAATACCCCTGATTTACAC
1 AATTACCAAAATACCCCTGATTTATAA
* *
71905910 AATTA-CATAAATACCCTTGACTTTCTAA
1 AATTACCA-AAATACCCCTGA-TTTATAA
71905938 AA
1 AA
71905940 ATTATAGAAA
Statistics
Matches: 89, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
26 5 0.06
27 51 0.57
28 33 0.37
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTATAA
Found at i:71905976 original size:27 final size:27
Alignment explanation
Indices: 71905937--71905988 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
71905927 TGACTTTCTA
*
71905937 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAAGACCATTGGTTTAC
*
71905964 AAAATTACT-GAAAGACCTTTGGTTT
1 AAAATTA-TAGAAAGACCATTGGTTT
71905989 GTACATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAAGACCATTGGTTTAC
Found at i:71906953 original size:25 final size:25
Alignment explanation
Indices: 71906915--71906981 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
71906905 AGGAAGTGCT
* * *
71906915 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
71906940 AAAAGGGATTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
71906965 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
71906982 ATTATTAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:71906986 original size:24 final size:25
Alignment explanation
Indices: 71906940--71906991 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
71906930 CAGTTTACCG
*
71906940 AAAAGGGATTTGCCCCAGTTTATCA
1 AAAAGGGATTTGCCCCAGATTATCA
* *
71906965 AAAAGGGCTTTGCCCCA-ATTATTA
1 AAAAGGGATTTGCCCCAGATTATCA
71906989 AAA
1 AAA
71906992 GAGGCTAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAAGGGATTTGCCCCAGATTATCA
Found at i:71908804 original size:48 final size:47
Alignment explanation
Indices: 71908706--71908877 Score: 175
Period size: 48 Copynumber: 3.6 Consensus size: 47
71908696 ATACTTTGAC
* * * * *
71908706 TTGGCTTCAGGCCATGATATCGGCACTTCTGGTG-AAACTTACTTTGAT
1 TTGGCTTTAGGCCATGATATTGGCACTTCGGGTGCGAGCTTAC--TGAT
*
71908754 TTGGCTTTAGGCCATGATATTGGCACTTCGGGTGCGAGCTTCACTAAT
1 TTGGCTTTAGGCCATGATATTGGCACTTCGGGTGCGAGCTT-ACTGAT
* * * * * * * *
71908802 TTGGCTATGGGTCATGATATTAGCACTTTGGGTGCGAGATATATTGAG
1 TTGGCTTTAGGCCATGATATTGGCACTTCGGGTGCGAGCT-TACTGAT
71908850 TTGGCTTTAGGCCATGATATTGGCACTT
1 TTGGCTTTAGGCCATGATATTGGCACTT
71908878 AGTGTGCGGG
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
48 95 0.93
49 5 0.05
50 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (47 bp):
TTGGCTTTAGGCCATGATATTGGCACTTCGGGTGCGAGCTTACTGAT
Found at i:71910620 original size:42 final size:42
Alignment explanation
Indices: 71910559--71910639 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
71910549 CAATAGCCCA
** * **
71910559 GTCTCATTTTGATGCCATATTCTGGATATGGTCTTACACGAT
1 GTCTCATAATGATGCCATATCCTACATATGGTCTTACACGAT
*
71910601 GTCTCATAATGATGTCATATCCTACATATGGTCTTACAC
1 GTCTCATAATGATGCCATATCCTACATATGGTCTTACAC
71910640 ATAGTCCGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (42 bp):
GTCTCATAATGATGCCATATCCTACATATGGTCTTACACGAT
Found at i:71916424 original size:27 final size:27
Alignment explanation
Indices: 71916394--71916572 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
71916384 ATATTGAGTC
* *
71916394 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71916421 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71916448 CGAACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71916476 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71916503 CGCACACTTAGTG-TCATCATATTCATTT
1 CGCACACTTAGTGCT-A-CATAATCAACT
* * *
71916531 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
71916558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71916573 GTACAATTTA
Statistics
Matches: 125, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
27 81 0.65
28 44 0.35
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71916483 original size:55 final size:54
Alignment explanation
Indices: 71916394--71916572 Score: 198
Period size: 55 Copynumber: 3.3 Consensus size: 54
71916384 ATATTGAGTC
* * * * *
71916394 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* * ** * *
71916448 CGAACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
71916503 CGCACACTTAGTG-TCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCT-A-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
71916558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71916573 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 20 0.19
55 76 0.74
56 7 0.07
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:71924704 original size:27 final size:27
Alignment explanation
Indices: 71924674--71924851 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71924664 ATATTGAGTC
* * * *
71924674 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
71924701 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71924728 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
71924756 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
71924783 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
71924810 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71924837 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71924852 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:71924813 original size:82 final size:81
Alignment explanation
Indices: 71924695--71924850 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71924685 TGCTATATAA
* *
71924695 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
71924760 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
71924777 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
71924841 CACTTAGTGC
65 CACTTAGTGC
71924851 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:71927942 original size:43 final size:43
Alignment explanation
Indices: 71927892--71928042 Score: 187
Period size: 43 Copynumber: 3.5 Consensus size: 43
71927882 TATCCTAGAT
* * *
71927892 ATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* * * * *
71927935 AGGGTCTTATACGAAATCATATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
* *
71927978 ATGGTCTTACACGTAATGACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
71928021 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
71928043 CTCGTTAATG
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 1 0.01
43 88 0.99
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:71928491 original size:6 final size:6
Alignment explanation
Indices: 71928480--71928504 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
71928470 TTGATAATAA
71928480 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
71928505 AAAATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:71928631 original size:20 final size:22
Alignment explanation
Indices: 71928591--71928636 Score: 69
Period size: 20 Copynumber: 2.2 Consensus size: 22
71928581 ATTATTAATA
*
71928591 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
71928613 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
71928633 TAAT
1 TAAT
71928637 TTTATTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.61
21 1 0.04
22 8 0.35
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:71928656 original size:13 final size:14
Alignment explanation
Indices: 71928640--71928681 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
71928630 TTTTAATTTT
71928640 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
71928653 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
71928668 ATTTTAAATAATAT
1 ATTTT-AATAATAT
71928682 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:71928666 original size:16 final size:16
Alignment explanation
Indices: 71928644--71928680 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
71928634 AATTTTATTT
71928644 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
71928661 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
71928676 TAATA
1 TAATA
71928681 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:71928733 original size:15 final size:15
Alignment explanation
Indices: 71928713--71928769 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
71928703 ATTCAATATT
71928713 AATATTTTAATAATA
1 AATATTTTAATAATA
*
71928728 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
71928747 AATATATTAATAATA
1 AATATTTTAATAATA
*
71928762 AATGTTTT
1 AATATTTT
71928770 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:71929263 original size:14 final size:14
Alignment explanation
Indices: 71929228--71929266 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
71929218 CTAGAAAAGT
* *
71929228 AAATCATCTTCCAG
1 AAATCATTTTCTAG
71929242 AAATCATTTTCTAG
1 AAATCATTTTCTAG
*
71929256 AAGTCATTTTC
1 AAATCATTTTC
71929267 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (14 bp):
AAATCATTTTCTAG
Found at i:71935797 original size:15 final size:16
Alignment explanation
Indices: 71935777--71935811 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
71935767 TCATATTATA
71935777 ATAAAA-TAATATTTT
1 ATAAAACTAATATTTT
71935792 ATAAAATCTAATATTTT
1 ATAAAA-CTAATATTTT
71935809 ATA
1 ATA
71935812 TAGACTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
17 12 0.67
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAAAACTAATATTTT
Found at i:71940089 original size:41 final size:41
Alignment explanation
Indices: 71940032--71940115 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
71940022 ATGGAGTCAG
71940032 TCCTCAAGAAGTACCATGATTGAAATATCCTTATTGTATAC
1 TCCTCAAGAAGTACCATGATTGAAATATCCTTATTGTATAC
71940073 TCCTCAAGAAGTACCATGATTGAAATATCCTTATTGTATAC
1 TCCTCAAGAAGTACCATGATTGAAATATCCTTATTGTATAC
71940114 TC
1 TC
71940116 TTGACAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (41 bp):
TCCTCAAGAAGTACCATGATTGAAATATCCTTATTGTATAC
Found at i:71943786 original size:35 final size:35
Alignment explanation
Indices: 71943740--71943808 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
71943730 GCCAAGGCGT
71943740 GACATTGGTAAGTTTTACAAGGCAAGGAAATCATA
1 GACATTGGTAAGTTTTACAAGGCAAGGAAATCATA
71943775 GACATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GACATTGGTAAGTTTTACAAGGCAAGGAAATCAT
71943809 GTAAGACCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (35 bp):
GACATTGGTAAGTTTTACAAGGCAAGGAAATCATA
Found at i:71951451 original size:32 final size:32
Alignment explanation
Indices: 71951389--71951454 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
71951379 AGGATCTAAG
**
71951389 TATGAAGAGTCTATTTTTATATCTGGAGTCAT
1 TATGAAGAGTCTATTTTTATATCTAAAGTCAT
* * *
71951421 TATGAAGAGTCTGTTTTTGTCTCTAAAGTCAT
1 TATGAAGAGTCTATTTTTATATCTAAAGTCAT
71951453 TA
1 TA
71951455 AAGGGGTCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (32 bp):
TATGAAGAGTCTATTTTTATATCTAAAGTCAT
Found at i:71956073 original size:131 final size:132
Alignment explanation
Indices: 71955874--71956132 Score: 349
Period size: 131 Copynumber: 2.0 Consensus size: 132
71955864 TTATTCATTG
* * ** * * * * *
71955874 AAAAATTCTTTAAAATGAAGGCGATGTTTGATATTTGTCAATTCGCGGAATCGTGCCCTATCGTG
1 AAAAACTCTTTAAAACGAAGGAAATGCTCGATATTTGGCAATTCGAGGAATCGTACCCTATCGTG
* * * *
71955939 CTGGGTTGCAATTT-CTCGTTGCTCAAAATAATCGAATGTCCTTTTAGAATTTCATTCATGTTTT
66 CTGGGTTGCAATTTCCTAGTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTT
71956003 CC
131 CC
* *
71956005 AAAAACTCTTTAAAACGAAGGAAATGCTCGATGTTTGGCAATTCGAGGAATTGTACCCTATCGTG
1 AAAAACTCTTTAAAACGAAGGAAATGCTCGATATTTGGCAATTCGAGGAATCGTACCCTATCGTG
* * *
71956070 CTGGGTTGTAATTTCCTATTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTT
66 CTGGGTTGCAATTTCCTAGTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTT
71956133 CTCTAAATTC
Statistics
Matches: 109, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
131 67 0.61
132 42 0.39
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (132 bp):
AAAAACTCTTTAAAACGAAGGAAATGCTCGATATTTGGCAATTCGAGGAATCGTACCCTATCGTG
CTGGGTTGCAATTTCCTAGTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTTTT
CC
Found at i:71967933 original size:133 final size:133
Alignment explanation
Indices: 71967689--71967967 Score: 371
Period size: 133 Copynumber: 2.1 Consensus size: 133
71967679 GTGAATTCTA
* * * * *
71967689 CAGATATTGTCTCCCTGAAGTTACAGTAGAGCAGATCGGAGATGATGAATCTTGTCTTCCTAAAA
1 CAGATCTTGTCTCCCTGAAGTTACAGTAGAGCAAATCGAAGACGACGAATCTTGTCTTCCTAAAA
* * *
71967754 TTGCAGTGAACCAGATTTAAGCCACTATCCTATCTCCCTAAAGTTGTA-TTGAAGTAGACTAAAA
66 TTGCAGTGAACCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAA-TAGACCAAAA
71967818 ATTG
130 ATTG
* * ** * * *
71967822 TAGATCTTGTCTCCCTGGAGTTGTAGTGGAGCAAATCGAAGACGGCGAATCTTGTCTTCCTAAAG
1 CAGATCTTGTCTCCCTGAAGTTACAGTAGAGCAAATCGAAGACGACGAATCTTGTCTTCCTAAAA
** *
71967887 TTGCAGTGAAGTAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAATAGACCAAAGA
66 TTGCAGTGAACCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAATAGACCAAAAA
71967952 TTG
131 TTG
*
71967955 CAGATCTCGTCTC
1 CAGATCTTGTCTC
71967968 TAGTGGAGCA
Statistics
Matches: 125, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
133 121 0.97
134 4 0.03
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (133 bp):
CAGATCTTGTCTCCCTGAAGTTACAGTAGAGCAAATCGAAGACGACGAATCTTGTCTTCCTAAAA
TTGCAGTGAACCAGATTTAAGCCACCATCCTATCTCCCTAAAGTTGTAGTGGAATAGACCAAAAA
TTG
Found at i:71969986 original size:44 final size:45
Alignment explanation
Indices: 71969901--71969991 Score: 175
Period size: 44 Copynumber: 2.0 Consensus size: 45
71969891 TGTGTCATTT
71969901 TATGTATCATTAAGCATATATATTAGTACTTATATTTAACTTACA
1 TATGTATCATTAAGCATATATATTAGTACTTATATTTAACTTACA
71969946 TATGTATCATTAAGCATATAT-TTAGTACTTATATTTAACTTACA
1 TATGTATCATTAAGCATATATATTAGTACTTATATTTAACTTACA
71969990 TA
1 TA
71969992 CGTTATTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 25 0.54
45 21 0.46
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (45 bp):
TATGTATCATTAAGCATATATATTAGTACTTATATTTAACTTACA
Found at i:71971600 original size:127 final size:131
Alignment explanation
Indices: 71971315--71971605 Score: 367
Period size: 127 Copynumber: 2.3 Consensus size: 131
71971305 GATATTTGTC
* * *
71971315 AATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTGCTCAAAATAATCGAATGT
1 AATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTAGTTGCTCAAAATAATCGAATAT
* * * * * *
71971380 CCGTTTAGAATTTCATTCATGTTTTCCAAAAACTCTTTAAAACAAAGGAAATGTTCGATGTTTGG
66 CCCTTTAGAATTTCACTCATGTTCTCCAAAAACTCTCTAAAACAAAGGAAATGTTCAATGTTTAG
*
71971445 C
131 A
* * *
71971446 AATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATA
1 AATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTT-CTAGTTGCTCAAAATAATCGAATA
* * **
71971511 TCCCTTTAGAATTTCACTCATGTTCT-C-TAAA-T-TCTAAAA-TAAGGCGATGTTCAATGTTTA
65 TCCCTTTAGAATTTCACTCATGTTCTCCAAAAACTCTCTAAAACAAAGGAAATGTTCAATGTTTA
71971571 GA
130 GA
* *
71971573 AATTCGAGGAATCATGCCCTATTGTGCTGGGTT
1 AATTCGAGGAATCGTGCCCTATCGTGCTGGGTT
71971606 TCGGTTTTTT
Statistics
Matches: 140, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
127 48 0.34
128 6 0.04
129 1 0.01
130 3 0.02
131 39 0.28
132 43 0.31
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (131 bp):
AATTCGAGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTAGTTGCTCAAAATAATCGAATAT
CCCTTTAGAATTTCACTCATGTTCTCCAAAAACTCTCTAAAACAAAGGAAATGTTCAATGTTTAG
A
Found at i:71975118 original size:40 final size:39
Alignment explanation
Indices: 71974948--71975161 Score: 224
Period size: 39 Copynumber: 5.5 Consensus size: 39
71974938 CGGATGATAA
* *
71974948 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATA-T
* *
71974988 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTGTGCGAGTTACTATAT
* * * *
71975027 CCGGGCTAATTCCCGAAGGCATT-CGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
71975065 -CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* *
71975104 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTA-CTATAT
* *
71975144 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71975162 TACTTGGCTT
Statistics
Matches: 149, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
37 21 0.14
38 12 0.08
39 60 0.40
40 56 0.38
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:71975157 original size:116 final size:116
Alignment explanation
Indices: 71974949--71975161 Score: 281
Period size: 116 Copynumber: 1.8 Consensus size: 116
71974939 GGATGATAAC
* * *
71974949 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGTG
1 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGAG
* *
71975014 CGAGTTATTATACCCGGGCTAATTCCCGAAGGCATTCGCGAGTTATTATGT
66 CGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGCGAGTTATTATGT
* *
71975065 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATTC
1 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT-
* *
71975128 GAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
63 GAGCGAGTTA-CTATACCCGGGCTAAATCCCGAAGG
71975162 TACTTGGCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
115 2 0.02
116 61 0.73
117 21 0.25
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (116 bp):
CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGAG
CGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGCGAGTTATTATGT
Found at i:71979127 original size:37 final size:37
Alignment explanation
Indices: 71979077--71979152 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
71979067 CTTTAGCTCA
*
71979077 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
*
71979114 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
71979151 GA
1 GA
71979153 ATATATTTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (37 bp):
GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
Done.