Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 213 of 362
Found at i:71979418 original size:47 final size:47
Alignment explanation
Indices: 71979357--71979541 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
71979347 TACATATATT
* * * *
71979357 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
71979404 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
71979451 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
71979498 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
71979542 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:71979477 original size:22 final size:22
Alignment explanation
Indices: 71979450--71979525 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
71979440 GCTCACATTC
71979450 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
71979472 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
71979496 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
71979519 ATCACAT
1 ATCACAT
71979526 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:71987116 original size:40 final size:40
Alignment explanation
Indices: 71987009--71987225 Score: 255
Period size: 40 Copynumber: 5.5 Consensus size: 40
71986999 CAGATGATAA
* * *
71987009 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
71987049 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
71987088 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
71987128 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
71987168 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
71987208 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
71987226 TACTTGGCTT
Statistics
Matches: 155, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 46 0.30
40 109 0.70
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:71987211 original size:80 final size:80
Alignment explanation
Indices: 71987009--71987225 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 80
71986999 CAGATGATAA
* * *
71987009 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGGCAAT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGGCAAT
*
71987071 TGTGCGAGTTATTATAC
64 TGTGCGAGTTACTATAC
* *
71987088 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-AT
1 CCGGGCT-ATGTCCCGAAGGCATTCGTGCGAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCAAT
*
71987150 TGGTGCGAGTTACTATAT
64 T-GTGCGAGTTACTATAC
* * *
71987168 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
71987226 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
79 60 0.51
80 58 0.49
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (80 bp):
CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAATTG
TGCGAGTTACTATAC
Found at i:71987221 original size:119 final size:119
Alignment explanation
Indices: 71987009--71987225 Score: 289
Period size: 119 Copynumber: 1.8 Consensus size: 119
71986999 CAGATGATAA
* * *
71987009 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
* *
71987074 GCGAGTTATTATACCCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
66 GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
* *
71987128 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
* *
71987191 CGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 -GAGCGAGTTA-CTATACCCGGGCTAAATCCCGAAGG
71987226 TACTTGGCTT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
118 2 0.02
119 62 0.73
120 21 0.25
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
GCGAGTTACTATACCCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
Found at i:71991101 original size:43 final size:42
Alignment explanation
Indices: 71991053--71991209 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
71991043 GATGTGATAT
* * *
71991053 CGTGTAAGACCATGTCTGAGACATTGGCATCAATCTGAGATTA
1 CGTGTAAGACCATATCTGGGACATTGGCATCAATAT-AGATTA
* * * * *
71991096 CGTGTAAAACCATGTCTGGGACATTAGCATC-GTATATGATTT
1 CGTGTAAGACCATATCTGGGACATTGGCATCAATATA-GATTA
* * * *
71991138 CGTGTAAGACCCTATCTGGGACAGTGGCATCAATATTTGATAA
1 CGTGTAAGACCATATCTGGGACATTGGCATCAATA-TAGATTA
* *
71991181 CATGTAAGACCATATCTGGGATA-TGGCAT
1 CGTGTAAGACCATATCTGGGACATTGGCAT
71991210 TGTACTAGTT
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 38 0.41
43 53 0.57
44 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATTGGCATCAATATAGATTA
Found at i:71998026 original size:31 final size:33
Alignment explanation
Indices: 71997982--71998042 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
71997972 TACTTTTAAA
*
71997982 TTAAAATTAAATTAA-ATTAAATTTTAAAAAAT
1 TTAAAATTAAATTAATAATAAATTTTAAAAAAT
* *
71998014 TTAAAA-TGAATTAATAATAACTTTTAAAA
1 TTAAAATTAAATTAATAATAAATTTTAAAA
71998043 TTTTTTCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (33 bp):
TTAAAATTAAATTAATAATAAATTTTAAAAAAT
Found at i:72002346 original size:30 final size:30
Alignment explanation
Indices: 72002299--72002357 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
72002289 TTTATGAGCC
*
72002299 TAGGGGCTAAATCGTAAATATGTAAAAGTT
1 TAGGGGCAAAATCGTAAATATGTAAAAGTT
*
72002329 TAGGGGTCAAAAT-GTAAATTTGTAAAAGT
1 TAGGGG-CAAAATCGTAAATATGTAAAAGT
72002358 ATGATTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATCGTAAATATGTAAAAGTT
Found at i:72002874 original size:43 final size:43
Alignment explanation
Indices: 72002793--72002874 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
72002783 GAGATATGTG
* *
72002793 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATTCAA
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATTCAA
* *
72002836 GCATCCAAGCTTGTTGAGAGGTCCAAGTTCATGGTGGAT
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGAT
72002875 GCGATTCATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGAGGTCCAAGTTCATGATGGATTCAA
Found at i:72009657 original size:24 final size:24
Alignment explanation
Indices: 72009625--72009672 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
72009615 TTGTTGAAAA
72009625 ATATTTGAGGAAAAGATATGAGGC
1 ATATTTGAGGAAAAGATATGAGGC
72009649 ATATTTGAGGAAAAGATATGAGGC
1 ATATTTGAGGAAAAGATATGAGGC
72009673 TTATCTCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.29, T:0.25
Consensus pattern (24 bp):
ATATTTGAGGAAAAGATATGAGGC
Found at i:72013957 original size:46 final size:45
Alignment explanation
Indices: 72013810--72013973 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 45
72013800 TGTGTGAGCT
* *
72013810 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATAGGCCACGAGAC-TAAGCC
* * * * *
72013856 AGTGTAAGACCATGTTTGAGACATG-GTAGCGACATTGAGAC-AAGCGC
1 AGTGTAAGA-CATGTCTGGGACATGCATAG-GCCA-CGAGACTAAGC-C
* *
72013903 TAGTGTAAGACCTGTCTGGGACATGCATCGGCCACGAGACATAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATAGGCCACGAGAC-TAAGCC
* *
72013950 AGGGTAAGACATGTTTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
72013974 GAATCGGCAC
Statistics
Matches: 93, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
46 41 0.44
47 32 0.34
48 20 0.22
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATAGGCCACGAGACTAAGCC
Found at i:72026701 original size:160 final size:161
Alignment explanation
Indices: 72026402--72026701 Score: 351
Period size: 160 Copynumber: 1.9 Consensus size: 161
72026392 TCCTTCCGAG
* * * * * * *
72026402 TGCCTTAATTCAGTCTCCATAATCAATAATGATAACCCCTCTGCCACTTTCGTTGAAAACAACAA
1 TGCCCTAATTCAGTCTCCACAATCAACAATGATAACCACTCTCCCACTATCGTCGAAAACAACAA
* * * *
72026467 CAATAACGTCGATGTTCCATCAAATCCTTCCCTTACAACCAAAGCGAAAATAAAAAAAAATTCTA
66 CAATAACGACGATGTTCCATCAAATCCTTCCCCTACAACCAAAGCGAAAACAAAAAAAAAGTCTA
72026532 AGAAGAAGAAAAACAACAACAATAACAATGA
131 AGAAGAAGAAAAACAACAACAATAACAATGA
* *
72026563 TGCCCTAATTCAGTCTCCACAATCAACGATGATAACCACTC-CCATCACTATCGTCG-AAACAAT
1 TGCCCTAATTCAGTCTCCACAATCAACAATGATAACCACTCTCC--CACTATCGTCGAAAACAAC
* * * * *
72026626 AACAA-AACGACGATG-TCCTATCAAATCTTTCCCCTGCAACCAAA-CTAAAGACAACAAAGAAG
64 AACAATAACGACGATGTTCC-ATCAAATCCTTCCCCTACAACCAAAGCGAAA-ACAAAAAAAAAG
72026688 TCTAA-ACAGAAGAA
127 TCTAAGA-AGAAGAA
72026702 CAATAATGTT
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
159 8 0.07
160 52 0.45
161 47 0.41
162 9 0.08
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.21
Consensus pattern (161 bp):
TGCCCTAATTCAGTCTCCACAATCAACAATGATAACCACTCTCCCACTATCGTCGAAAACAACAA
CAATAACGACGATGTTCCATCAAATCCTTCCCCTACAACCAAAGCGAAAACAAAAAAAAAGTCTA
AGAAGAAGAAAAACAACAACAATAACAATGA
Found at i:72028107 original size:11 final size:11
Alignment explanation
Indices: 72028091--72028115 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72028081 TTACCATCTC
72028091 TTTCTTTTCTT
1 TTTCTTTTCTT
72028102 TTTCTTTTCTT
1 TTTCTTTTCTT
72028113 TTT
1 TTT
72028116 TCCACAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:72030608 original size:29 final size:29
Alignment explanation
Indices: 72030524--72030609 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 29
72030514 ATGTTGATGA
* *
72030524 TATTTTATAATTATTTAATTAGATAAATAT
1 TATTTTATTATTATTTAATTAG-TATATAT
* * * *
72030554 T-GTTTATTAATATTTTAATGAG-ATATTT
1 TATTTTATTATTA-TTTAATTAGTATATAT
*
72030582 TATTTTATTATTATTTATTTAGTATATA
1 TATTTTATTATTATTTAATTAGTATATA
72030610 AGGAAGGAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
28 12 0.29
29 21 0.50
30 9 0.21
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (29 bp):
TATTTTATTATTATTTAATTAGTATATAT
Found at i:72032278 original size:11 final size:11
Alignment explanation
Indices: 72032262--72032291 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
72032252 GTAAACGTAA
72032262 GACCATGGTTG
1 GACCATGGTTG
72032273 GACCATGGTTG
1 GACCATGGTTG
72032284 GACCATGG
1 GACCATGG
72032292 CAATACATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.37, T:0.23
Consensus pattern (11 bp):
GACCATGGTTG
Found at i:72032357 original size:38 final size:38
Alignment explanation
Indices: 72032308--72032436 Score: 183
Period size: 38 Copynumber: 3.4 Consensus size: 38
72032298 ATGTGTGTAC
72032308 GTGT-AAGACCATAGCTGGGCTATGGCATCGTAATTAAA
1 GTGTAAAGACCATAGCTGGGCTATGGCATCGTAA-TAAA
* * *
72032346 GTGT-AAGACCATAGTTGGGCTATGGCATTGTGATAAA
1 GTGTAAAGACCATAGCTGGGCTATGGCATCGTAATAAA
*
72032383 GTGTAAAGACCATAGTTGGGCTATGGCATTC-TAATAAA
1 GTGTAAAGACCATAGCTGGGCTATGGCA-TCGTAATAAA
72032421 GTGTAAAGACCATAGC
1 GTGTAAAGACCATAGC
72032437 AGGACCATGG
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
37 8 0.10
38 74 0.89
39 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (38 bp):
GTGTAAAGACCATAGCTGGGCTATGGCATCGTAATAAA
Found at i:72042777 original size:49 final size:49
Alignment explanation
Indices: 72042668--72042840 Score: 162
Period size: 49 Copynumber: 3.6 Consensus size: 49
72042658 CACATCTAAT
* * * *
72042668 TCGATGCCATGTCCCAGACAGGTCTTATACTAACTTTCATATATCGAGG
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGG
* *
72042717 TCGATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATC-AGTG
1 TCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAG-G
* * * * * *
72042766 TC-AGTGTCATGTCTTAGACAGGTCTTACACTGA----CACATGTCAAGC
1 TCGA-TGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGG
*
72042811 T-GATGCCATGTCCCAGACAGGTCTTACACT
1 TCGATGCCATGTCCTAGACAGGTCTTACACT
72042841 AGCACACATC
Statistics
Matches: 104, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
44 24 0.23
45 7 0.07
46 2 0.02
48 3 0.03
49 68 0.65
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
TCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCGAGG
Found at i:72042836 original size:44 final size:46
Alignment explanation
Indices: 72042720--72042944 Score: 156
Period size: 47 Copynumber: 4.8 Consensus size: 46
72042710 ATCGAGGTCG
* * * * *
72042720 ATGCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCAGTGTCA
1 ATGCCATGTCCCAGACAGGTCTTACACT-GCACACATC--TCAATGCCA
* * ** * **
72042769 GTGTCATGTCTTAGACAGGTCTTACACTG-ACACATGTCAA-GCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGCACACATCTCAATGCCA
*
72042813 ATGCCATGTCCCAGACAGGTCTTACACTAGCACACATCTTAATGCCA
1 ATGCCATGTCCCAGACAGGTCTTACACT-GCACACATCTCAATGCCA
* * **
72042860 ATGCCATGTCCCAAACATGGTCTTACACTG-GC-TTTCAT-AATGTGGCCA
1 ATGCCATGTCCCAGACA-GGTCTTACACTGCACACATC-TCAA--T-GCCA
*
72042908 ATG-CATGTCCCAGACATGTCTTACACTAGCACACATC
1 ATGCCATGTCCCAGACAGGTCTTACACT-GCACACATC
72042945 CATATCACCC
Statistics
Matches: 138, Mismatches: 27, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
44 25 0.18
45 8 0.06
46 21 0.15
47 37 0.27
48 20 0.14
49 27 0.20
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGCACACATCTCAATGCCA
Found at i:72043629 original size:20 final size:20
Alignment explanation
Indices: 72043604--72043642 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
72043594 AAAATTTCAA
72043604 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
72043624 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
72043643 AATAACCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:72050459 original size:17 final size:18
Alignment explanation
Indices: 72050437--72050480 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
72050427 AACCAAGTTC
*
72050437 ATTTTATATTAAA-TAAT
1 ATTTTATATAAAACTAAT
72050454 ATTTTATA-AAAACTAAT
1 ATTTTATATAAAACTAAT
*
72050471 ATCTTATATA
1 ATTTTATATA
72050481 GACTTAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 19 0.83
18 1 0.04
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTTTATATAAAACTAAT
Found at i:72050810 original size:31 final size:31
Alignment explanation
Indices: 72050772--72050833 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
72050762 TTAGTAATTG
72050772 TAAAGGCCCCAATTGAAGTAGCCCAAAACTA
1 TAAAGGCCCCAATTGAAGTAGCCCAAAACTA
72050803 TAAAGGCCCCAATTGAAGTAGCCCAAAACTA
1 TAAAGGCCCCAATTGAAGTAGCCCAAAACTA
72050834 ATGAGTCTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (31 bp):
TAAAGGCCCCAATTGAAGTAGCCCAAAACTA
Found at i:72051445 original size:20 final size:20
Alignment explanation
Indices: 72051406--72051466 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 20
72051396 ATATTCGCAA
*
72051406 TTAATATTAATATTTATAAAAT
1 TTAAT-TTAA-ATATATAAAAT
72051428 TTAATTTAAATATAT-AAA-
1 TTAATTTAAATATATAAAAT
72051446 TTATATTTAAA-ATATTAAAAT
1 TTA-ATTTAAATATA-TAAAAT
72051467 ATAACAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
18 6 0.18
19 11 0.32
20 8 0.24
21 4 0.12
22 5 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAATTTAAATATATAAAAT
Found at i:72051464 original size:19 final size:19
Alignment explanation
Indices: 72051420--72051469 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
72051410 TATTAATATT
*
72051420 TATAAAATTTAATTTAAATA
1 TATAAAATAT-ATTTAAATA
*
72051440 TATAAATTATATTTAAA-A
1 TATAAAATATATTTAAATA
72051458 TATTAAAATATA
1 TA-TAAAATATA
72051470 ACAAATAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 3 0.12
19 15 0.58
20 8 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TATAAAATATATTTAAATA
Found at i:72059241 original size:52 final size:52
Alignment explanation
Indices: 72059076--72059243 Score: 151
Period size: 52 Copynumber: 3.2 Consensus size: 52
72059066 AAGCCATATT
* * **
72059076 ATATCACATATCATACCGATGCCATATCCCAGATATGGTCTTATACGGAATCAC
1 ATATCACAT-T-ACACCGATGCCATAGCCCACCTATGGTCTTATACGGAATCAC
* * *
72059130 ATTATCACATTACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAGT-ATG
1 A-TATCACATTACACCGATGCCATAGCCCACCTATGGTCTTATAC-GGAATCA-C
** * * * * *
72059184 A-ATCACATTGTACCGATTCTATAGCCTACCTTTGGTCTTATATGGAATCAC
1 ATATCACATTACACCGATGCCATAGCCCACCTATGGTCTTATACGGAATCAC
72059235 ATATCACAT
1 ATATCACAT
72059244 CTTTTCCATC
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
51 5 0.05
52 42 0.45
53 32 0.34
54 7 0.07
55 8 0.09
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (52 bp):
ATATCACATTACACCGATGCCATAGCCCACCTATGGTCTTATACGGAATCAC
Found at i:72072173 original size:42 final size:42
Alignment explanation
Indices: 72072113--72072261 Score: 133
Period size: 42 Copynumber: 3.5 Consensus size: 42
72072103 CCGAAGGCTG
* * *
72072113 AACAAAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * * *
72072155 AACGGAAGCTCGTAAGAGCTGAACGGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
* * * *
72072197 AACAGAAGCTCA-ATAGAGTTGAAC-GAAAACTCATATA-AGTTA
1 AACAGAAGCTCATA-AGAGCTAAACAG-AAACCCATA-AGGGTTA
* *
72072239 AACAGAAGCTCGTGAGAGCTAAA
1 AACAGAAGCTCATAAGAGCTAAA
72072262 TGGAAAGTAA
Statistics
Matches: 87, Mismatches: 16, Indels: 8
0.78 0.14 0.07
Matches are distributed among these distances:
41 2 0.02
42 84 0.97
43 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTA
Found at i:72072191 original size:21 final size:21
Alignment explanation
Indices: 72072127--72072191 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
72072117 AAAGCTCATG
* *
72072127 AGAGCTAAACAGAAACCCATA
1 AGAGCTGAACGGAAACCCATA
* * * * *
72072148 AGGGTTGAACGGAAGCTCGTA
1 AGAGCTGAACGGAAACCCATA
72072169 AGAGCTGAACGGAAACCCATA
1 AGAGCTGAACGGAAACCCATA
72072190 AG
1 AG
72072192 GGTTAAACAG
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.42, C:0.20, G:0.26, T:0.12
Consensus pattern (21 bp):
AGAGCTGAACGGAAACCCATA
Found at i:72072365 original size:25 final size:25
Alignment explanation
Indices: 72072337--72072387 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
72072327 ATTTTCCTCC
72072337 ATTGTCGTCAATTCATCGAATGCCG
1 ATTGTCGTCAATTCATCGAATGCCG
*
72072362 ATTGTCGTCAATTCGTCGAATGCCG
1 ATTGTCGTCAATTCATCGAATGCCG
72072387 A
1 A
72072388 ATGTACTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (25 bp):
ATTGTCGTCAATTCATCGAATGCCG
Found at i:72075631 original size:39 final size:39
Alignment explanation
Indices: 72075491--72075704 Score: 261
Period size: 40 Copynumber: 5.4 Consensus size: 39
72075481 ATATCCGGAC
* * *
72075491 TAAGATCCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGT
* * * *
72075531 TAAGCCCCGAAGGCCTTTGTGCGAGATATTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
72075571 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
72075611 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * *
72075650 TAAGTCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
72075688 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
72075705 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 22 0.14
39 61 0.39
40 72 0.46
41 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:72075649 original size:79 final size:76
Alignment explanation
Indices: 72075491--72075704 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 76
72075481 ATATCCGGAC
* * * * *
72075491 TAAGATCCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG
1 TAAG-TCCGAAGGCA-TTGTGCGAGTTATAAA-TCCGGGTTAAG-TCCGAAGGCATTCGTGCGAG
72075556 ATATTAAATCCGGGT
62 ATATTAAATCCGGGT
*
72075571 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGT
1 TAAGT-CCGAAGGCATT-GTGCGAGTTA-TAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGA
72075636 TATTAAATCCGGGT
63 TATTAAATCCGGGT
* * * *
72075650 TAAGTCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TAAGTCCGAAGGCATTGTGCGAGTTA-TAAATCCGGGTTAAGT-CCGAAGGCATT
72075705 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
77 22 0.18
78 22 0.18
79 39 0.33
80 33 0.28
81 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
TAAGTCCGAAGGCATTGTGCGAGTTATAAATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGATAT
TAAATCCGGGT
Found at i:72075724 original size:78 final size:79
Alignment explanation
Indices: 72075560--72075739 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 79
72075550 TGCGAGATAT
* * *
72075560 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCA
** * *
72075625 TTCGTGCGAGTTAT
66 TTCGAACGAGTGAC
* *
72075639 TAAATCCGGGTTAAGT-CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGT-CCGAAGGC
*
72075702 ATTTGAACGAG-GAGC
65 ATTCGAACGAGTGA-C
* *
72075717 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
72075740 TACGTGATTT
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 30 0.35
78 40 0.47
79 16 0.19
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCGAAGGCA
TTCGAACGAGTGAC
Found at i:72075725 original size:117 final size:119
Alignment explanation
Indices: 72075447--72075739 Score: 269
Period size: 117 Copynumber: 2.5 Consensus size: 119
72075437 TGAATGCTGT
* ** * ** *
72075447 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA--ATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGGGTTAAG-TCCGAAGGCATTC
* * *
72075509 GTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAAT
64 GTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAA
* ** * * *
72075565 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCGAAGGCATTCGT
* * * * *
72075630 GCGAGTTATTAAA-TCCGGGTTAAG-TCCGAAGG-CATTGTGTGAGTTACTAAAA
66 GCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAA
* * *
72075682 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGGTTAAGT-CCGAAGG
72075740 TACGTGATTT
Statistics
Matches: 144, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
116 8 0.06
117 54 0.38
118 30 0.21
119 38 0.26
120 14 0.10
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCGAAGGCATTCGT
GCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAA
Found at i:72083102 original size:15 final size:15
Alignment explanation
Indices: 72083059--72083101 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
72083049 GTATCGTATA
* *
72083059 TTTTATTATTTTACAT
1 TTTTATTTTTTTTC-T
72083075 TTTTATTTTTTTTCT
1 TTTTATTTTTTTTCT
72083090 TTTT-TTTTTTTT
1 TTTTATTTTTTTT
72083102 TTTATTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 8 0.32
15 5 0.20
16 12 0.48
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTATTTTTTTTCT
Found at i:72083103 original size:20 final size:20
Alignment explanation
Indices: 72083074--72083111 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72083064 TTATTTTACA
*
72083074 TTTTTATTTTTTTTCTTTTT
1 TTTTTATTTTTATTCTTTTT
*
72083094 TTTTTTTTTTTATTCTTT
1 TTTTTATTTTTATTCTTT
72083112 GCATATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.05, G:0.00, T:0.89
Consensus pattern (20 bp):
TTTTTATTTTTATTCTTTTT
Found at i:72087486 original size:26 final size:26
Alignment explanation
Indices: 72087454--72087566 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 26
72087444 AAATTGTACA
72087454 GCACTAAGTGTGCG-ATTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATG-T
* * *
72087480 GCACTAAGTGTTCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
72087507 GCACTAAGTGTAGCGAATTGACCATGC
1 GCACTAAGTGT-GCGAATTGACTATGT
72087534 GCAC-AAGTGTGCGAGTATTGAC-ATGT
1 GCACTAAGTGTGCGA--ATTGACTATGT
72087560 AGCACTA
1 -GCACTA
72087567 GGTTAAGCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
25 4 0.06
26 22 0.31
27 34 0.48
28 11 0.15
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGACTATGT
Found at i:72087621 original size:40 final size:40
Alignment explanation
Indices: 72087567--72087745 Score: 222
Period size: 39 Copynumber: 4.5 Consensus size: 40
72087557 TGTAGCACTA
* *
72087567 GGTTAAG-CCCGAAGGCCTTTGTGCGAGATATTAAATCCG
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCG
* *
72087606 GGTTAAGTCCCGAAGGCATTCGTTGCGAGTT-TTACAT-CG
1 GGTTAAGTCCCGAAGGCATTTG-TGCGAGTTATTAAATCCG
* *
72087645 GGTTAAGTCCCGAAGGCATTCGCGCGAGTTATTAAATCCG
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCG
* * *
72087685 GGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCG
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCG
* *
72087724 GGCTATGTCCCGAAGGCATTTG
1 GGTTAAGTCCCGAAGGCATTTG
72087746 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
38 7 0.06
39 68 0.56
40 40 0.33
41 7 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCG
Found at i:72087734 original size:79 final size:79
Alignment explanation
Indices: 72087570--72087743 Score: 219
Period size: 79 Copynumber: 2.2 Consensus size: 79
72087560 AGCACTAGGT
* * *
72087570 TAAG-CCCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGA
1 TAAGTCCCGAAGGCATTCGCGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGA
* * * *
72087634 GTTTTACATCGGGT
66 GTTTAAAACCGGGC
* *
72087648 TAAGTCCCGAAGGCATTCGCGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G-TGTGA
1 TAAGTCCCGAAGGCATTCGCGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGA
72087711 GTTACTAAAACCGGGC
66 GTT--TAAAACCGGGC
*
72087727 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
72087744 TGAACGAGGA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 7 0.08
78 5 0.06
79 71 0.86
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTCGCGCGAGATATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGA
GTTTAAAACCGGGC
Found at i:72087763 original size:79 final size:79
Alignment explanation
Indices: 72087598--72087778 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 79
72087588 TGCGAGATAT
* * * *
72087598 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGAGTTTTACATCGGGTTAAGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGAGTTTAAAACCGGGCTAAGTCCCGAAGGCA
** * *
72087663 TTCGCGCGAGTTAT
66 TTCGAACGAGTGAC
* *
72087677 TAAATCCGGGTTAAGTCCCGAAGGCATT-G-TGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGAGTT--TAAAACCGGGCTAAGTCCCGAAGG
*
72087740 CATTTGAACGAG-GAGC
64 CATTCGAACGAGTGA-C
* *
72087756 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
72087779 TACGTGATTT
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
77 7 0.08
78 17 0.20
79 62 0.72
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTTGCGAGTTTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGAACGAGTGAC
Found at i:72097494 original size:32 final size:32
Alignment explanation
Indices: 72097453--72097523 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
72097443 TCTGTATGGG
72097453 TAAATTTAATTATTAATCTATCACAGTTCATA
1 TAAATTTAATTATTAATCTATCACAGTTCATA
*
72097485 TAAATTTAATTCTTAATCTATCACAGTTCATA
1 TAAATTTAATTATTAATCTATCACAGTTCATA
*
72097517 TACATTT
1 TAAATTT
72097524 GCATCCTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.03, T:0.45
Consensus pattern (32 bp):
TAAATTTAATTATTAATCTATCACAGTTCATA
Found at i:72106885 original size:20 final size:18
Alignment explanation
Indices: 72106861--72106914 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
72106851 ATAATTTTTT
72106861 TATTAATTTAATATTAAA
1 TATTAATTTAATATTAAA
72106879 GTGATT-ATGTTAATATTAAA
1 -T-ATTAAT-TTAATATTAAA
72106899 T-TTAATTTAATGATTA
1 TATTAATTTAAT-ATTA
72106915 TCTACACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
17 7 0.23
18 6 0.19
19 4 0.13
20 14 0.45
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (18 bp):
TATTAATTTAATATTAAA
Found at i:72107899 original size:36 final size:36
Alignment explanation
Indices: 72107833--72107904 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
72107823 GATGCTCAAA
*
72107833 CACAAATAGCTGAAGTGAATCAAGAAGATTTAATGT
1 CACAAATACCTGAAGTGAATCAAGAAGATTTAATGT
*
72107869 CACAGATACCTGAAGTGAATCAAGAAGATTTAATGT
1 CACAAATACCTGAAGTGAATCAAGAAGATTTAATGT
72107905 TCACTATCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.25
Consensus pattern (36 bp):
CACAAATACCTGAAGTGAATCAAGAAGATTTAATGT
Found at i:72120454 original size:28 final size:25
Alignment explanation
Indices: 72120384--72120447 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
72120374 AAAAAATGAT
*
72120384 AATTATTA-ATATA-TAATTATATC
1 AATTATAATATATATTAATTATATC
*
72120407 CATTATAATATATATTAATTATTATC
1 AATTATAATATATATTAATTA-TATC
*
72120433 AATTTTAATAT-TATT
1 AATTATAATATATATT
72120448 GTTAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 6 0.18
24 5 0.15
25 10 0.29
26 13 0.38
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (25 bp):
AATTATAATATATATTAATTATATC
Found at i:72121159 original size:3 final size:3
Alignment explanation
Indices: 72121151--72121187 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
72121141 ATCTTTTCCT
72121151 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
72121188 TATTATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:72121292 original size:25 final size:24
Alignment explanation
Indices: 72121245--72121298 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
72121235 TAGTTTTCTC
*
72121245 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
72121269 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
72121294 TTAAT
1 TTAAT
72121299 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:72122822 original size:16 final size:16
Alignment explanation
Indices: 72122801--72122831 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72122791 ATGTAACGCC
*
72122801 CCAAAAATCCTGAAAA
1 CCAAAAATCCCGAAAA
72122817 CCAAAAATCCCGAAA
1 CCAAAAATCCCGAAA
72122832 TCTTGAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.29, G:0.06, T:0.10
Consensus pattern (16 bp):
CCAAAAATCCCGAAAA
Found at i:72124363 original size:29 final size:29
Alignment explanation
Indices: 72124321--72124432 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
72124311 ATAATATGAT
*
72124321 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* ** *
72124350 TTGGGCCTAGTGGGCTATAAAAATATGAA
1 TTGGGCCTAGTGGGCCATATGAATGTGAA
* *
72124379 CTGGGCC-AGATGGGCCATATGAATGAG-A
1 TTGGGCCTAG-TGGGCCATATGAATGTGAA
* *
72124407 TTGGGCCCAGTGGGCCATATGCATGT
1 TTGGGCCTAGTGGGCCATATGAATGT
72124433 ATGTAGGGGT
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 23 0.34
29 44 0.66
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTGAA
Found at i:72124403 original size:58 final size:57
Alignment explanation
Indices: 72124313--72124421 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 57
72124303 GCATGAGTAT
** * *
72124313 AATATGATTTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCTATAAA
1 AATATGAACTGGGCCTAATGGGCCATATGAATGAG-ATTGGGCCCAGTGGGCTATAAA
72124371 AATATGAACTGGGCC-AGATGGGCCATATGAATGAGATTGGGCCCAGTGGGC
1 AATATGAACTGGGCCTA-ATGGGCCATATGAATGAGATTGGGCCCAGTGGGC
72124422 CATATGCATG
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
57 16 0.35
58 30 0.65
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (57 bp):
AATATGAACTGGGCCTAATGGGCCATATGAATGAGATTGGGCCCAGTGGGCTATAAA
Found at i:72127125 original size:16 final size:15
Alignment explanation
Indices: 72127104--72127134 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
72127094 AGAAATGTGT
72127104 ATTAATTCTTAATTTA
1 ATTAATT-TTAATTTA
72127120 ATTAATTTTAATTTA
1 ATTAATTTTAATTTA
72127135 TTCCCCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTAATTTTAATTTA
Found at i:72129122 original size:18 final size:18
Alignment explanation
Indices: 72129087--72129120 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72129077 CATAAATGAC
*
72129087 TGAGTTTTTCTACTTTTG
1 TGAGTTTGTCTACTTTTG
72129105 TGAGTTTGTC-ACTTTT
1 TGAGTTTGTCTACTTTT
72129121 TGAAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.59
Consensus pattern (18 bp):
TGAGTTTGTCTACTTTTG
Found at i:72134194 original size:30 final size:30
Alignment explanation
Indices: 72134160--72134220 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72134150 TTCTTGAGCC
* *
72134160 TAGGGGCAAAAGTGTAAATATGTAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * *
72134190 TAGGGGAAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
72134220 T
1 T
72134221 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:72134799 original size:68 final size:63
Alignment explanation
Indices: 72134713--72134934 Score: 230
Period size: 67 Copynumber: 3.4 Consensus size: 63
72134703 TAATACGGGA
* *
72134713 TGTATACCATGTGTACAAGAGAGCTACGAGACATTATAAGGTAGCTAGGTCGCATGGGTGATACT
1 TGTACACCATGTGTACAAGAGAGCTACGAG--A-TA-AA-GTAGCTAGGTCGCATGGGTGGTACT
*
72134778 ATG
61 AAG
* * * *
72134781 TGTACACCATGTAG-ACAAGAGAGCTACGAGATAAATGTAGCTAGGTTGCATGTGTGGTTCCAAG
1 TGTACACCATGT-GTACAAGAGAGCTACGAGATAAA-GTAGCTAGGTCGCATGGGTGGTACTAAG
* ** * *
72134845 TAAAGGACACCATGTAAACAAGAGAGCTACGAGATAAAGTGGCTAGGTCACATGGGTGGTACTAA
1 T---GTACACCATGTGTACAAGAGAGCTACGAGATAAAGTAGCTAGGTCGCATGGGTGGTACTAA
72134910 G
63 G
*
72134911 TGTTCACCATGTGTACAAGAGAGC
1 TGTACACCATGTGTACAAGAGAGC
72134935 CAAAATTATG
Statistics
Matches: 129, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
63 19 0.15
64 25 0.19
65 2 0.02
66 24 0.19
67 31 0.24
68 27 0.21
69 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (63 bp):
TGTACACCATGTGTACAAGAGAGCTACGAGATAAAGTAGCTAGGTCGCATGGGTGGTACTAAG
Found at i:72137061 original size:15 final size:16
Alignment explanation
Indices: 72137041--72137070 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72137031 GAAAATTGAC
72137041 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
72137056 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
72137071 TGAGATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:72143986 original size:288 final size:288
Alignment explanation
Indices: 72143456--72144029 Score: 826
Period size: 288 Copynumber: 2.0 Consensus size: 288
72143446 CCAGGTCAAT
* *
72143456 TACTAAAGTCTATCAAATATGTAATTTGGCAGTGTTAGAACCAGTTACCTTTAAAGAGGTAGCAC
1 TACTAAAGTCTACCAAATATGTAATTTGGCAATGTTAGAACCAGTTACCTTTAAAGAGGTAGCAC
* * *
72143521 AAGAACTTGAATAAAGAGATGTTGTGAAGGAAGAGATTAGTATGATCAACAAGAATGAGACTTGG
66 AAGAACTTGAATAAAGAGATGGTATGAAGGAAGAGATTAGTATGATCAACAAGAATAAGACTTGG
* * *
72143586 GAGTTGTTAGATAGACCAGTTCATAAGAAATTCATTGGGATCAAATAGGTGTTCAGAACTAAAAT
131 GAGTTGGTAGATAGACCAGTTCATAAGAAAGTCATTGGGATCAAATAGGTGTTCAGAACCAAAAT
* * * * * *
72143651 GAATCCTGATGGTTCTATCAACAAGTACAAGGCTAGCTTGGTTATCAAGGGGTATAGTTAGCAAT
196 GAAACCTGATGGTTCTATCAACAAGTACAAGGCCAGATTGATTATCAAAGGGTATAGTCAGCAAT
* * *
72143716 TTGGTGTTGATTTTACTGAGACCTTTGC
261 TTAGTGTGGATTTTACTAAGACCTTTGC
* * * ** * * *
72143744 TACTAAAGTCTACCAGATGTGTAATTTGGCAATGTTGGAAGTAGTTACTTTTGAAGAGGTAGTAC
1 TACTAAAGTCTACCAAATATGTAATTTGGCAATGTTAGAACCAGTTACCTTTAAAGAGGTAGCAC
* * *
72143809 AAGAACTTGAATAGAGAGATGGTATGAAGGAAGATATTAGTTTGATCAACAAGAATAAGACTTGG
66 AAGAACTTGAATAAAGAGATGGTATGAAGGAAGAGATTAGTATGATCAACAAGAATAAGACTTGG
* *
72143874 GAGTTGGTAGATAGA-CAGATTCATAAGAAAGTCATTGGGGTCAAATAGGTGTTTAGAACCAAAA
131 GAGTTGGTAGATAGACCAG-TTCATAAGAAAGTCATTGGGATCAAATAGGTGTTCAGAACCAAAA
* * *
72143938 TGAAACTTGATGGTTTTATCAACAAGTACAAGGCCAGATTGATTATCAAAGGGTATAGTCAGTAA
195 TGAAACCTGATGGTTCTATCAACAAGTACAAGGCCAGATTGATTATCAAAGGGTATAGTCAGCAA
*
72144003 TTTATTGTGGATTTTACTAAGACCTTT
260 TTTAGTGTGGATTTTACTAAGACCTTT
72144030 TCCCCTGTAA
Statistics
Matches: 251, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
287 3 0.01
288 248 0.99
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (288 bp):
TACTAAAGTCTACCAAATATGTAATTTGGCAATGTTAGAACCAGTTACCTTTAAAGAGGTAGCAC
AAGAACTTGAATAAAGAGATGGTATGAAGGAAGAGATTAGTATGATCAACAAGAATAAGACTTGG
GAGTTGGTAGATAGACCAGTTCATAAGAAAGTCATTGGGATCAAATAGGTGTTCAGAACCAAAAT
GAAACCTGATGGTTCTATCAACAAGTACAAGGCCAGATTGATTATCAAAGGGTATAGTCAGCAAT
TTAGTGTGGATTTTACTAAGACCTTTGC
Found at i:72145268 original size:15 final size:16
Alignment explanation
Indices: 72145248--72145284 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
72145238 GTTGATAAAG
72145248 AAAATAAAAT-AAATA
1 AAAATAAAATAAAATA
*
72145263 AAAATAATATAAAATA
1 AAAATAAAATAAAATA
72145279 AAAATA
1 AAAATA
72145285 GAATTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:72153608 original size:6 final size:6
Alignment explanation
Indices: 72153592--72153621 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
72153582 TGATTAATTT
72153592 AAAAT- AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA A
72153622 TTTGCATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:72160907 original size:47 final size:46
Alignment explanation
Indices: 72160838--72161106 Score: 155
Period size: 46 Copynumber: 5.8 Consensus size: 46
72160828 GGTATAATCT
* *
72160838 GATGCCATGCCCCAGACATGGTCTTACACTAGCTCACACGTTAA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACGTTAATGCC
* *
72160885 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATC-TT-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACA-CGTTAAT-GCC
* * * ** * *
72160931 AATGCATGTCCAAGACATGTCTTACACTGGCTTGCATC-TCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACA-CGTTAATGCC
* * *
72160977 AATGCATATCCCAGACATGTCTTACACTAGCT--CTCGTTTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACACG-TT-AATGCC
* * * *
72161023 GATGCCATGTTCCAGACATGGTCTTACACTGGCT--CTCG-TAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACACGTTAA--T-GCC
* *
72161071 GATGCATGTTCCAGACATGTCTTACACTAGCACACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACA
72161107 ATTAACCTGA
Statistics
Matches: 180, Mismatches: 26, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 23 0.13
46 65 0.36
47 56 0.31
48 24 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCACACGTTAATGCC
Found at i:72167636 original size:83 final size:83
Alignment explanation
Indices: 72167483--72167650 Score: 246
Period size: 83 Copynumber: 2.0 Consensus size: 83
72167473 ACACGCTCGT
72167483 GTCCATGGCCCATGTCTCTCACACGGCTATGACACGCCTATGTCTTAACCCATGTACAAAAACAT
1 GTCCATGGCCCATGTCTCTCACACGGCTATGACACGCCTATGTCTTAACCCATGTACAAAAACAT
72167548 AGACATTCTATTTCTAAC
66 AGACATTCTATTTCTAAC
* * * * * * * *
72167566 GTCCATGGCCCGTGTCTCTCACACGGCTATGACACGCTTGTGTCTTAGCCTATGTGCAAGAACTT
1 GTCCATGGCCCATGTCTCTCACACGGCTATGACACGCCTATGTCTTAACCCATGTACAAAAACAT
* *
72167631 GGACATTCTGTTTCTAAC
66 AGACATTCTATTTCTAAC
72167649 GT
1 GT
72167651 TAGCAATTCT
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 75 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.30
Consensus pattern (83 bp):
GTCCATGGCCCATGTCTCTCACACGGCTATGACACGCCTATGTCTTAACCCATGTACAAAAACAT
AGACATTCTATTTCTAAC
Found at i:72168639 original size:50 final size:46
Alignment explanation
Indices: 72168573--72168698 Score: 150
Period size: 50 Copynumber: 2.7 Consensus size: 46
72168563 CACATCAAGT
72168573 CGATGCCATGTCCCAGACATAGTCTTACACTGACTTTAACATATTCGT-GC
1 CGATGCCATGTCCCAGACATAGTCTTACACTGAC----ACATATT-GTAGC
* * *
72168623 CGATGCCATGTCCCAGACATGGTCTTACATTGACACATCTTGTAGC
1 CGATGCCATGTCCCAGACATAGTCTTACACTGACACATATTGTAGC
*
72168669 CGATG-TATGTCCCAGACATA-TCTTACACTG
1 CGATGCCATGTCCCAGACATAGTCTTACACTG
72168699 GCTTGCATCT
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
44 9 0.13
45 15 0.22
46 13 0.19
50 32 0.46
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATAGTCTTACACTGACACATATTGTAGC
Found at i:72168686 original size:45 final size:46
Alignment explanation
Indices: 72168528--72168698 Score: 145
Period size: 50 Copynumber: 3.6 Consensus size: 46
72168518 TATAATACCA
* * ** *
72168528 ATGCCATGTCCCAGACATGTTCTTACAAT-AGCTCACACA-TCAAGTCG
1 ATGCCATGTCCCAGACATG-TCTTACACTGA-CT-ACATATTCGTGCCG
72168575 ATGCCATGTCCCAGACATAGTCTTACACTGACTTTAACATATTCGTGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGAC--T-ACATATTCGTGCCG
* *
72168625 ATGCCATGTCCCAGACATGGTCTTACATTGAC-ACATCTT-GTAGCCG
1 ATGCCATGTCCCAGACAT-GTCTTACACTGACTACATATTCGT-GCCG
* *
72168671 ATG-TATGTCCCAGACATATCTTACACTG
1 ATGCCATGTCCCAGACATGTCTTACACTG
72168699 GCTTGCATCT
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
44 9 0.08
45 15 0.14
46 13 0.12
47 27 0.25
48 2 0.02
49 5 0.05
50 35 0.33
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGTCTTACACTGACTACATATTCGTGCCG
Found at i:72178027 original size:20 final size:21
Alignment explanation
Indices: 72178002--72178043 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
72177992 ACTTTGAAAC
*
72178002 AGGGC-ACACGCTCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
72178022 AGGGCAACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
72178043 A
1 A
72178044 TTAATTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.14
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:72179043 original size:27 final size:27
Alignment explanation
Indices: 72179005--72179059 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
72178995 CATCAATGTG
72179005 AGTTATATCATTAAGGCCATGAATTAC
1 AGTTATATCATTAAGGCCATGAATTAC
72179032 AGTTATATCATTAAGGCCATGAATTAC
1 AGTTATATCATTAAGGCCATGAATTAC
72179059 A
1 A
72179060 TCACCCTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
AGTTATATCATTAAGGCCATGAATTAC
Found at i:72181852 original size:13 final size:13
Alignment explanation
Indices: 72181834--72181858 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72181824 TGGTCGTGTA
72181834 AGGGACACGGGCC
1 AGGGACACGGGCC
72181847 AGGGACACGGGC
1 AGGGACACGGGC
72181859 GTGTGCTCAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:72183356 original size:12 final size:12
Alignment explanation
Indices: 72183339--72183363 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72183329 CCCAACACAC
72183339 CCGTGTGCTAGG
1 CCGTGTGCTAGG
72183351 CCGTGTGCTAGG
1 CCGTGTGCTAGG
72183363 C
1 C
72183364 TATATGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:72190744 original size:42 final size:43
Alignment explanation
Indices: 72190698--72190868 Score: 195
Period size: 43 Copynumber: 4.0 Consensus size: 43
72190688 TCTGAATTCA
* * **
72190698 TTCACCGACATT-TCGCCTGCTAGGCTTGAAGCCTGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATCAT
* * * * *
72190740 TTCACC-GTATTATAGCCTGCTAAGCTCG-AGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCT-GATATCAT
* *
72190782 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATCAT
*
72190825 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCTGTATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTG-ATATCAT
72190869 ATTTCGATAA
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
43 59 0.55
44 10 0.09
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCTGATATCAT
Found at i:72191757 original size:70 final size:70
Alignment explanation
Indices: 72191640--72191774 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 70
72191630 TAGCACATAA
* * * *
72191640 CACCATGATTTTGTCCTAATTTGGACAACCAATAATTTACAGTATTACAGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAACCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
72191705 CTAAG
66 CTAAG
*
72191710 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAACCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
72191775 TAATAAACTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAACCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
CTAAG
Found at i:72193565 original size:27 final size:27
Alignment explanation
Indices: 72193535--72193712 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
72193525 ATATTGAGTC
* *
72193535 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72193562 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72193589 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
72193617 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72193644 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
72193671 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72193698 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72193713 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72193674 original size:82 final size:81
Alignment explanation
Indices: 72193556--72193711 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
72193546 TGCTATATAA
* *
72193556 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72193621 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
72193638 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATTGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72193702 CACTTAGTGC
65 CACTTAGTGC
72193712 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72200248 original size:40 final size:40
Alignment explanation
Indices: 72200144--72200399 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
72200134 AAACCAAGTA
* * *
72200144 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72200183 TCTTCGGGAC-TAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72200222 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72200262 CCTTCGGGACTTAGCCCGGATATACTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72200302 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72200342 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72200381 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72200400 TTATCATCCG
Statistics
Matches: 200, Mismatches: 12, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
38 4 0.02
39 72 0.36
40 124 0.62
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72200376 original size:119 final size:119
Alignment explanation
Indices: 72200144--72200399 Score: 376
Period size: 119 Copynumber: 2.2 Consensus size: 119
72200134 AAACCAAGTA
* * * * * *
72200144 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGTCTTCGGGACTAGCCCGGTTATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTAGCCCGGATATAAT
* *
72200208 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
72200262 CCTTCGGGACTTAGCCCGGATATA-CTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGAC-TAGCCCGGATATA
*
72200326 ATAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
64 ATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
72200381 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72200400 TTATCATCCG
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
118 15 0.12
119 75 0.60
120 35 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTAGCCCGGATATAAT
AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:72208009 original size:28 final size:27
Alignment explanation
Indices: 72207953--72208004 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
72207943 CATTTTATTT
* *
72207953 ATTTCACATTTTAGTCCCTCATTTACAA
1 ATTTCACAATTTAGTCCAT-ATTTACAA
72207981 ATTTCACAATTTAGTCCAT-TTTAC
1 ATTTCACAATTTAGTCCATATTTAC
72208005 TCAAAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
28 17 0.77
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (27 bp):
ATTTCACAATTTAGTCCATATTTACAA
Found at i:72215399 original size:28 final size:27
Alignment explanation
Indices: 72215343--72215394 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
72215333 CATTTCATTT
* *
72215343 ATTTCACATTTTAGTCCCTCATTTACAA
1 ATTTCACAATTTAGTCCAT-ATTTACAA
72215371 ATTTCACAATTTAGTCCAT-TTTAC
1 ATTTCACAATTTAGTCCATATTTAC
72215395 TCAAAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
28 17 0.77
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (27 bp):
ATTTCACAATTTAGTCCATATTTACAA
Found at i:72217897 original size:42 final size:42
Alignment explanation
Indices: 72217837--72217993 Score: 145
Period size: 42 Copynumber: 3.7 Consensus size: 42
72217827 TGTGATATCA
** *
72217837 TGTAAGACCATATTTGGGATATGGTGTTGATA-TGAGGTTTCG
1 TGTAAGACCATATTTGGGATATGGCATTGA-AGTGAGATTTCG
* * * *
72217879 TGTAAAACCATGTCTGGGACATGGCATTGAAGTGAGATTTCG
1 TGTAAGACCATATTTGGGATATGGCATTGAAGTGAGATTTCG
* ** * ** *
72217921 TATAAGACCATATTTGGGATATGAAATTGACGTGAGATCCCA
1 TGTAAGACCATATTTGGGATATGGCATTGAAGTGAGATTTCG
* *
72217963 TGTAAAGACCATATCTGGGACATGGCATTGA
1 TGT-AAGACCATATTTGGGATATGGCATTGA
72217994 CATCTTATTG
Statistics
Matches: 90, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
41 1 0.01
42 66 0.73
43 23 0.26
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGATATGGCATTGAAGTGAGATTTCG
Found at i:72217940 original size:84 final size:85
Alignment explanation
Indices: 72217839--72217993 Score: 213
Period size: 84 Copynumber: 1.8 Consensus size: 85
72217829 TGATATCATG
*** * * ** * *
72217839 TAAGACCATATTTGGGATATGGTGTTGATATGAGGTTTCGTGTAAA-ACCATGTCTGGGACATGG
1 TAAGACCATATTTGGGATATGAAATTGACATGAGATCCCATGTAAAGACCATATCTGGGACATGG
72217903 CATTGAAGTGAGATTTCGTA
66 CATTGAAGTGAGATTTCGTA
*
72217923 TAAGACCATATTTGGGATATGAAATTGACGTGAGATCCCATGTAAAGACCATATCTGGGACATGG
1 TAAGACCATATTTGGGATATGAAATTGACATGAGATCCCATGTAAAGACCATATCTGGGACATGG
72217988 CATTGA
66 CATTGA
72217994 CATCTTATTG
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 37 0.62
85 23 0.38
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (85 bp):
TAAGACCATATTTGGGATATGAAATTGACATGAGATCCCATGTAAAGACCATATCTGGGACATGG
CATTGAAGTGAGATTTCGTA
Found at i:72225588 original size:40 final size:40
Alignment explanation
Indices: 72225534--72225611 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
72225524 CGGATGTAAC
72225534 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
72225574 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATA
72225612 TTTTTTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:72234827 original size:19 final size:18
Alignment explanation
Indices: 72234800--72234861 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 18
72234790 TTGATTAGAC
*
72234800 AAATCATTAAAAGTTATAA
1 AAATTATTAAAA-TTATAA
72234819 AAATTATTAAAATTATTAA
1 AAATTATTAAAATTA-TAA
* *
72234838 AATTTATTAAAAACTATAA
1 AAATTATT-AAAATTATAA
72234857 AAATT
1 AAATT
72234862 TGTAAAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 3 0.08
19 28 0.76
20 6 0.16
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (18 bp):
AAATTATTAAAATTATAA
Found at i:72234829 original size:10 final size:10
Alignment explanation
Indices: 72234800--72234888 Score: 80
Period size: 9 Copynumber: 9.3 Consensus size: 10
72234790 TTGATTAGAC
*
72234800 AAATCATTAA
1 AAATTATTAA
*
72234810 AAGTTA-TAA
1 AAATTATTAA
72234819 AAATTATT-A
1 AAATTATTAA
72234828 AAATTATTAA
1 AAATTATTAA
*
72234838 AATTTATTAA
1 AAATTATTAA
*
72234848 AAACTA-TAA
1 AAATTATTAA
72234857 AAATT-TGTAA
1 AAATTAT-TAA
* *
72234867 AAATCATTTA
1 AAATTATTAA
72234877 AAA-TATTAA
1 AAATTATTAA
72234886 AAA
1 AAA
72234889 AATTGATAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
9 31 0.49
10 31 0.49
11 1 0.02
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.36
Consensus pattern (10 bp):
AAATTATTAA
Found at i:72234867 original size:19 final size:18
Alignment explanation
Indices: 72234814--72234869 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 18
72234804 CATTAAAAGT
*
72234814 TATAAAAATTATT-AAAAT
1 TATAAAAATT-TTAAAAAC
*
72234832 TATTAAAATTTATTAAAAAC
1 TA-TAAAAATT-TTAAAAAC
72234852 TATAAAAATTTGTAAAAA
1 TATAAAAATTT-TAAAAA
72234870 TCATTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 3 0.09
19 23 0.72
20 6 0.19
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
TATAAAAATTTTAAAAAC
Found at i:72245914 original size:17 final size:17
Alignment explanation
Indices: 72245880--72245919 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
72245870 CAAAATGATG
* **
72245880 GTTGTTCTTGGATGAGA
1 GTTGTTCTTGAACAAGA
72245897 GTTGTTCTTGAACAAGA
1 GTTGTTCTTGAACAAGA
72245914 GTTGTT
1 GTTGTT
72245920 ATATGGTGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.20, C:0.07, G:0.30, T:0.42
Consensus pattern (17 bp):
GTTGTTCTTGAACAAGA
Found at i:72248989 original size:12 final size:12
Alignment explanation
Indices: 72248974--72249007 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
72248964 AATGCAAATG
*
72248974 ATAATGATAACA
1 ATAATAATAACA
72248986 ATAATAATAACA
1 ATAATAATAACA
72248998 ATAATAATAA
1 ATAATAATAA
72249008 ATCTAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAATAATAACA
Found at i:72250583 original size:43 final size:43
Alignment explanation
Indices: 72250511--72250626 Score: 137
Period size: 43 Copynumber: 2.6 Consensus size: 43
72250501 CCTATTACAA
* * * *
72250511 TCCTATTAGGATATTATTATGAAATATTATCAT-TTAGCAATTTGAT
1 TCCTAATAGGATATTA-TA-G-GATATTATC-TCTTAGAAATTTAAT
72250557 TCCTAA-AGAGATATTATAGGATATTATCTCTTAGAAATTTAAT
1 TCCTAATAG-GATATTATAGGATATTATCTCTTAGAAATTTAAT
72250600 TCCTAATAGGATATTATAGGATATTAT
1 TCCTAATAGGATATTATAGGATATTAT
72250627 TATGTGATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
42 1 0.02
43 43 0.68
44 3 0.05
45 4 0.06
46 12 0.19
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (43 bp):
TCCTAATAGGATATTATAGGATATTATCTCTTAGAAATTTAAT
Found at i:72254862 original size:17 final size:18
Alignment explanation
Indices: 72254835--72254869 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72254825 ATTTTTTAAT
72254835 AAAAATGATTAAAAATAA
1 AAAAATGATTAAAAATAA
*
72254853 AAAAAT-ATTATAAATAA
1 AAAAATGATTAAAAATAA
72254870 TCAGAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATGATTAAAAATAA
Found at i:72254947 original size:10 final size:10
Alignment explanation
Indices: 72254934--72255138 Score: 69
Period size: 10 Copynumber: 21.3 Consensus size: 10
72254924 AATTGATATC
72254934 AATTTATAAA
1 AATTTATAAA
72254944 AA-TTATAAA
1 AATTTATAAA
*
72254953 AA--AATAAA
1 AATTTATAAA
*
72254961 AATATTATCCAA
1 AAT-TTAT-AAA
*
72254973 AA--TATAAT
1 AATTTATAAA
72254981 AATTTATAAA
1 AATTTATAAA
**
72254991 AAACTATAAA
1 AATTTATAAA
* *
72255001 TATTAATAAA
1 AATTTATAAA
* *
72255011 ACA-TAATTAA
1 A-ATTTATAAA
72255021 AATATT-TAAA
1 AAT-TTATAAA
*
72255031 ATTTTATAAA
1 AATTTATAAA
** *
72255041 AACGTATTAA
1 AATTTATAAA
72255051 AATTCTATAAA
1 AATT-TATAAA
*
72255062 AA-TCATAAA
1 AATTTATAAA
*
72255071 AA-TTGTAAA
1 AATTTATAAA
*
72255080 AA-GTACTAAA
1 AATTTA-TAAA
*
72255090 AGTTT-T-AA
1 AATTTATAAA
* *
72255098 AATTGATATA
1 AATTTATAAA
*
72255108 AACTTATAAA
1 AATTTATAAA
72255118 AA-TTATAAA
1 AATTTATAAA
*
72255127 AA-TAATAAA
1 AATTTATAAA
72255136 AAT
1 AAT
72255139 AAAAACTTGA
Statistics
Matches: 141, Mismatches: 38, Indels: 32
0.67 0.18 0.15
Matches are distributed among these distances:
8 15 0.11
9 49 0.35
10 61 0.43
11 12 0.09
12 4 0.03
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (10 bp):
AATTTATAAA
Found at i:72254951 original size:9 final size:9
Alignment explanation
Indices: 72254937--72255138 Score: 88
Period size: 9 Copynumber: 21.1 Consensus size: 9
72254927 TGATATCAAT
72254937 TTATAAAAA
1 TTATAAAAA
72254946 TTATAAAAA
1 TTATAAAAA
*
72254955 -AATAAAAATA
1 TTAT-AAAA-A
*
72254965 TTATCCAAAA
1 TTAT-AAAAA
*
72254975 -TATAATAAT
1 TTATAA-AAA
72254984 TTATAAAAAA
1 TTAT-AAAAA
* *
72254994 CTATAAATA
1 TTATAAAAA
72255003 TTAATAAAACA
1 TT-ATAAAA-A
*
72255014 TAATTAAAATA
1 TTA-TAAAA-A
*
72255025 TT-TAAAATT
1 TTATAAAA-A
72255034 TTATAAAAA
1 TTATAAAAA
* *
72255043 CGTATTAAAAT
1 -TTA-TAAAAA
72255054 TCTATAAAAA
1 T-TATAAAAA
*
72255064 TCATAAAAA
1 TTATAAAAA
*
72255073 TTGTAAAAA
1 TTATAAAAA
* *
72255082 GTACTAAAAG
1 TTA-TAAAAA
*
72255092 TT-TTAAAA
1 TTATAAAAA
*
72255100 TTGATATAAAC
1 TT-ATA-AAAA
72255111 TTATAAAAA
1 TTATAAAAA
72255120 TTATAAAAA
1 TTATAAAAA
*
72255129 TAATAAAAA
1 TTATAAAAA
72255138 T
1 T
72255139 AAAAACTTGA
Statistics
Matches: 143, Mismatches: 33, Indels: 34
0.68 0.16 0.16
Matches are distributed among these distances:
8 9 0.06
9 67 0.47
10 39 0.27
11 28 0.20
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (9 bp):
TTATAAAAA
Found at i:72255009 original size:20 final size:18
Alignment explanation
Indices: 72254938--72255011 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 18
72254928 GATATCAATT
*
72254938 TATAAAAATTATAAAAAAA
1 TATAAATATTAT-AAAAAA
* **
72254957 TAAAAATATTATCCAAAA
1 TATAAATATTATAAAAAA
72254975 TAT-AATAATTTATAAAAAA
1 TATAAAT-A-TTATAAAAAA
72254994 CTATAAATATTAATAAAA
1 -TATAAATATT-ATAAAA
72255012 CATAATTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
17 3 0.07
18 7 0.16
19 20 0.47
20 10 0.23
21 3 0.07
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAATATTATAAAAAA
Found at i:72255282 original size:18 final size:18
Alignment explanation
Indices: 72255259--72255293 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72255249 GAACCAATTT
72255259 TTTTTAAATTTTAATATA
1 TTTTTAAATTTTAATATA
* *
72255277 TTTTTAATTTTTTATAT
1 TTTTTAAATTTTAATAT
72255294 TTCATTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTAAATTTTAATATA
Found at i:72255610 original size:38 final size:37
Alignment explanation
Indices: 72255563--72255655 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 37
72255553 AGTTTTTACG
* * *
72255563 ATTTGTTTATAATTTTTATAAGTTTATATCAATTTTAAT
1 ATTT-TTTATAATTTTTACAA-TTTATAACAATTCTAAT
* *
72255602 ATTTTTTATAATTATTTACAATTTTTAAGAATTCTAAT
1 ATTTTTTATAATT-TTTACAATTTATAACAATTCTAAT
*
72255640 ATGTTTTTTTAATTTT
1 AT-TTTTTATAATTTT
72255656 AAACGTGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
38 26 0.57
39 20 0.43
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.60
Consensus pattern (37 bp):
ATTTTTTATAATTTTTACAATTTATAACAATTCTAAT
Found at i:72255619 original size:10 final size:9
Alignment explanation
Indices: 72255568--72255754 Score: 64
Period size: 10 Copynumber: 19.9 Consensus size: 9
72255558 TTACGATTTG
72255568 TTTATAATT
1 TTTATAATT
72255577 TTTATAAGTT
1 TTTATAA-TT
*
72255587 TATATCAATT
1 TTTAT-AATT
* *
72255597 TTAATATTT
1 TTTATAATT
72255606 TTTATAATT
1 TTTATAATT
*
72255615 ATTTACAATT
1 -TTTATAATT
*
72255625 TTTAAGAATT
1 TTT-ATAATT
* * *
72255635 CTAATATGTT
1 TTTATA-ATT
*
72255645 TTTTTAA-T
1 TTTATAATT
72255653 TTTA-AACGTGT
1 TTTATAA--T-T
**
72255664 TAAATAAGTT
1 TTTATAA-TT
72255674 TTGT-TAA-T
1 TT-TATAATT
72255682 TTTATAATTT
1 TTTATAA-TT
72255692 GTTTATAATT
1 -TTTATAATT
*
72255702 TATTAGAATT
1 T-TTATAATT
72255712 TATTAT-ATT
1 T-TTATAATT
72255721 TTTAT-A-T
1 TTTATAATT
*
72255728 TTTATAATA
1 TTTATAATT
72255737 TTTATAAATT
1 TTTAT-AATT
*
72255747 TTCATAAT
1 TTTATAAT
72255755 CTAAATATAT
Statistics
Matches: 133, Mismatches: 26, Indels: 38
0.68 0.13 0.19
Matches are distributed among these distances:
7 9 0.07
8 16 0.12
9 35 0.26
10 57 0.43
11 14 0.11
12 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.58
Consensus pattern (9 bp):
TTTATAATT
Found at i:72255737 original size:18 final size:18
Alignment explanation
Indices: 72255710--72255754 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
72255700 TTTATTAGAA
* * *
72255710 TTTATTATATTTTTATAT
1 TTTATAATATTTATAAAT
72255728 TTTATAATATTTATAAAT
1 TTTATAATATTTATAAAT
72255746 TTTCATAAT
1 TTT-ATAAT
72255755 CTAAATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTATAATATTTATAAAT
Found at i:72255892 original size:30 final size:29
Alignment explanation
Indices: 72255856--72255924 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
72255846 ATCTCAAAAC
72255856 TATACATGAA-TTATG-TTTAATGTGCAATTG
1 TATACATGAACTT-TGATTT-AT-TGCAATTG
* *
72255886 TATACATGAACTTTGATTTCTTGCAATTT
1 TATACATGAACTTTGATTTATTGCAATTG
72255915 TATACATGAA
1 TATACATGAA
72255925 ATTTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 17 0.49
30 13 0.37
31 5 0.14
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (29 bp):
TATACATGAACTTTGATTTATTGCAATTG
Found at i:72256150 original size:29 final size:29
Alignment explanation
Indices: 72256077--72256164 Score: 95
Period size: 31 Copynumber: 2.9 Consensus size: 29
72256067 GATTAAATCA
* * *
72256077 AAATTAAAATTTCAAGTATATATTTGAACC
1 AAATTAAAGTTT-AAGTATATAATTGCACC
*
72256107 ACAATTAGAGTTTTAAGTATATAATTGCACC
1 A-AATTAAAG-TTTAAGTATATAATTGCACC
* *
72256138 AAATTAAAGTTTATGTATACAATTGCA
1 AAATTAAAGTTTAAGTATATAATTGCA
72256165 TATTCAATCA
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
29 16 0.33
30 8 0.16
31 22 0.45
32 3 0.06
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (29 bp):
AAATTAAAGTTTAAGTATATAATTGCACC
Found at i:72259356 original size:26 final size:26
Alignment explanation
Indices: 72259320--72259423 Score: 163
Period size: 26 Copynumber: 4.0 Consensus size: 26
72259310 ACAAATTGAG
*
72259320 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATATTCCATGAT
* *
72259346 AATGGATTAGGTAAATATTCTATGAT
1 AATGGGTTAGGTAAATATTCCATGAT
72259372 AATGGGTTAGGTAAATATTCCATGAT
1 AATGGGTTAGGTAAATATTCCATGAT
* *
72259398 AATGGTTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATATTCCATGAT
72259424 GGGCATTTCA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
AATGGGTTAGGTAAATATTCCATGAT
Found at i:72261054 original size:27 final size:27
Alignment explanation
Indices: 72261016--72261154 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
72261006 GAAGCGTCCC
* * *
72261016 GGTGGCTATGCCACATTTATCTGATAT
1 GGTGGCTCTGCCACATATATCTGATCT
72261043 GGTGGCTCTGCCACATATATCTG-TCCT
1 GGTGGCTCTGCCACATATATCTGAT-CT
*
72261070 GGTGGCTATGCCACA-ATTATCTGATCT
1 GGTGGCTCTGCCACATA-TATCTGATCT
* * *
72261097 GGTGGTTCTGCCATATATATCTGTTCT
1 GGTGGCTCTGCCACATATATCTGATCT
72261124 GGTGGCTCTGCCACA-ATATCTGTATCT
1 GGTGGCTCTGCCACATATATCTG-ATCT
72261151 GGTG
1 GGTG
72261155 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.09
27 85 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
GGTGGCTCTGCCACATATATCTGATCT
Found at i:72261100 original size:54 final size:54
Alignment explanation
Indices: 72261011--72261154 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
72261001 TGGAGGAAGC
* * *
72261011 GTCCCGGTGGCTATGCCACATTTATCTGATATGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
72261065 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCCATATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
72261119 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
72261155 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 6 0.07
54 76 0.93
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:72261165 original size:27 final size:26
Alignment explanation
Indices: 72261024--72261172 Score: 120
Period size: 27 Copynumber: 5.5 Consensus size: 26
72261014 CCGGTGGCTA
* * * *
72261024 TGCCACATTTATCTGATATGGTGGCTC
1 TGCCACA-ATATCTGTTCTGGTGACTC
* * *
72261051 TGCCACATATATCTGTCCTGGTGGCTA
1 TGCCACA-ATATCTGTTCTGGTGACTC
* **
72261078 TGCCACAATTATCTGATCTGGTGGTTC
1 TGCCACAA-TATCTGTTCTGGTGACTC
* *
72261105 TGCCATATATATCTGTTCTGGTGGCTC
1 TGCCACA-ATATCTGTTCTGGTGACTC
72261132 TGCCACAATATCTGTATCTGGTGACT-
1 TGCCACAATATCTGT-TCTGGTGACTC
*
72261158 TCGTCACAATATCTG
1 T-GCCACAATATCTG
72261173 GCAGCCTCGC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.10
27 92 0.89
28 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:72261166 original size:81 final size:80
Alignment explanation
Indices: 72261024--72261172 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 80
72261014 CCGGTGGCTA
* *
72261024 TGCCACATTTATCTGATATGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAATTA
1 TGCCACATATATCTGATATGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCCACAA-TA
72261089 TCTGATCTGGTGGTTC
65 TCTGATCTGGTGGTTC
* * * * *
72261105 TGCCATATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT-TCGTCACAAT
1 TGCCACATATATCTGATATGGTGGCTCTGCCACATATATCTGT-CCTGGTGACTAT-GCCACAAT
72261168 ATCTG
64 ATCTG
72261173 GCAGCCTCGC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
80 15 0.25
81 44 0.75
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (80 bp):
TGCCACATATATCTGATATGGTGGCTCTGCCACATATATCTGTCCTGGTGACTATGCCACAATAT
CTGATCTGGTGGTTC
Found at i:72264193 original size:17 final size:17
Alignment explanation
Indices: 72264154--72264196 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
72264144 CTATGATTGT
**
72264154 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
72264170 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
72264187 ATTGACATTT
1 ATTGACATTT
72264197 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:72268374 original size:39 final size:39
Alignment explanation
Indices: 72268331--72268444 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
72268321 GTGCTGAGAT
* * * *
72268331 TGTATCCCGGTTAGAGTCCCGCAGGCTTTGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
72268370 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
*
72268409 TGTATTCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
72268445 TGCTGGTAAT
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.18, C:0.25, G:0.32, T:0.26
Consensus pattern (39 bp):
TGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAA
Found at i:72272472 original size:14 final size:14
Alignment explanation
Indices: 72272453--72272484 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
72272443 TTTTATCTAT
72272453 TTTCTTTATGTTGC
1 TTTCTTTATGTTGC
72272467 TTTCTTTATGTTGC
1 TTTCTTTATGTTGC
72272481 TTTC
1 TTTC
72272485 ATCATACTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.12, T:0.66
Consensus pattern (14 bp):
TTTCTTTATGTTGC
Found at i:72274166 original size:25 final size:24
Alignment explanation
Indices: 72274108--72274160 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
72274098 GAATTTCATA
*
72274108 TTTTTCTATTGCTTTTGGACTACT
1 TTTTTCTATTGATTTTGGACTACT
*
72274132 TTTTTCTATTGATTTTGGACTGCT
1 TTTTTCTATTGATTTTGGACTACT
72274156 TTTTT
1 TTTTT
72274161 ATTATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.11, C:0.13, G:0.13, T:0.62
Consensus pattern (24 bp):
TTTTTCTATTGATTTTGGACTACT
Found at i:72276080 original size:26 final size:26
Alignment explanation
Indices: 72276051--72276230 Score: 123
Period size: 26 Copynumber: 6.9 Consensus size: 26
72276041 TAGTACCTGC
*
72276051 TAAATAATCACCGACTCAAGGCTTAT
1 TAAATAATCACCGACTCAAGGCCTAT
* * *
72276077 TAAATAATCACCAACTCATA-GCTTGT
1 TAAATAATCACCGACTCA-AGGCCTAT
* * *
72276103 TAAGTAATCACCCG-TTCAAGGCCTGT
1 TAAATAATCA-CCGACTCAAGGCCTAT
* ** * *
72276129 TAAATAATCATCGGTTCAAGGTCTAC
1 TAAATAATCACCGACTCAAGGCCTAT
* * *
72276155 TAAATAATTACCGGCTCATA-GCCTAC
1 TAAATAATCACCGACTCA-AGGCCTAT
* * *
72276181 TAAGTAATCACTGACTCAAGGCCTGT
1 TAAATAATCACCGACTCAAGGCCTAT
** *
72276207 TAAATAATCATAGACTTAAGGCCT
1 TAAATAATCACCGACTCAAGGCCT
72276231 GCTATTCAAA
Statistics
Matches: 123, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
25 4 0.03
26 115 0.93
27 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (26 bp):
TAAATAATCACCGACTCAAGGCCTAT
Found at i:72278375 original size:24 final size:22
Alignment explanation
Indices: 72278348--72278391 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
72278338 GCCAATACAA
*
72278348 AACCTTATTATTAAAACTAAAAAT
1 AACCTT-TTAATAAAA-TAAAAAT
72278372 AACCTTTTAATAAAATAAAA
1 AACCTTTTAATAAAATAAAA
72278392 TGAAATAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (22 bp):
AACCTTTTAATAAAATAAAAAT
Found at i:72283416 original size:40 final size:39
Alignment explanation
Indices: 72283358--72283475 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 39
72283348 AAAATGTTAT
* *
72283358 TGAATGCACATACATGCCCCTGTTTGTACTTCAGTACTCC
1 TGAATGCACATA-GTGCCCCTGTTTGTACTTCAGTACCCC
* * *
72283398 TGAATGCATATATGTGCCCCTATTTGTACTGT-GGTACCCC
1 TGAATGCACATA-GTGCCCCTGTTTGTACT-TCAGTACCCC
*
72283438 TGAATGCACATGAGTGCTCCTGTTTGTACTTCAGTACC
1 TGAATGCACAT-AGTGCCCCTGTTTGTACTTCAGTACC
72283476 TATAACACCT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 62 0.95
41 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (39 bp):
TGAATGCACATAGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:72284844 original size:28 final size:29
Alignment explanation
Indices: 72284783--72284844 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
72284773 AATGACCAAA
*
72284783 ATACCCCTAAGGGGTAAAAAATTACTATT
1 ATACCCCTAAGGGGTAAAAAATGACTATT
* * **
72284812 CTACCCCTAATGGGT-GGAAATGACTATT
1 ATACCCCTAAGGGGTAAAAAATGACTATT
72284840 ATACC
1 ATACC
72284845 TTAGAGGTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (29 bp):
ATACCCCTAAGGGGTAAAAAATGACTATT
Found at i:72285458 original size:25 final size:25
Alignment explanation
Indices: 72285424--72285474 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
72285414 ATTGGTTGTT
72285424 AATAACTCAATTTATTTAAGCTTAC
1 AATAACTCAATTTATTTAAGCTTAC
72285449 AATAACTCAATTTATTTAAGCTTAC
1 AATAACTCAATTTATTTAAGCTTAC
72285474 A
1 A
72285475 TATTTGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.39
Consensus pattern (25 bp):
AATAACTCAATTTATTTAAGCTTAC
Found at i:72285559 original size:18 final size:18
Alignment explanation
Indices: 72285538--72285574 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
72285528 GGGCTTTTGA
72285538 TTTTTTATATTAAACTAC
1 TTTTTTATATTAAACTAC
72285556 TTTTTTATATTAAACTAC
1 TTTTTTATATTAAACTAC
72285574 T
1 T
72285575 AGCCTAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTATATTAAACTAC
Found at i:72289481 original size:28 final size:28
Alignment explanation
Indices: 72289421--72289481 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
72289411 AATGACAAAA
* *
72289421 ATACCCCTGAGGGGTAAAAATTACTATT
1 ATACCCCTAAGGGGTAAAAATGACTATT
* * * *
72289449 TTACCCCTAATGGGTGAAAATGACTGTT
1 ATACCCCTAAGGGGTAAAAATGACTATT
72289477 ATACC
1 ATACC
72289482 GTAGAGGTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (28 bp):
ATACCCCTAAGGGGTAAAAATGACTATT
Found at i:72289693 original size:23 final size:23
Alignment explanation
Indices: 72289666--72289723 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
72289656 AAGTTTACCG
*
72289666 CTATTAGCAGCTTTGCTGCGTTA
1 CTATTAGCAGCTTTACTGCGTTA
*
72289689 CTATTAGCAGTTTTACTGCGTTA
1 CTATTAGCAGCTTTACTGCGTTA
*
72289712 CTATTAGTAGCT
1 CTATTAGCAGCT
72289724 ACACTGCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (23 bp):
CTATTAGCAGCTTTACTGCGTTA
Found at i:72289729 original size:23 final size:23
Alignment explanation
Indices: 72289666--72289731 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 23
72289656 AAGTTTACCG
***
72289666 CTATTAGCAGCTTTGCTGCGTTA
1 CTATTAGCAGCTACACTGCGTTA
* **
72289689 CTATTAGCAGTTTTACTGCGTTA
1 CTATTAGCAGCTACACTGCGTTA
*
72289712 CTATTAGTAGCTACACTGCG
1 CTATTAGCAGCTACACTGCG
72289732 ATATTGGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (23 bp):
CTATTAGCAGCTACACTGCGTTA
Found at i:72293558 original size:17 final size:19
Alignment explanation
Indices: 72293516--72293559 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
72293506 ACGAAATTTT
*
72293516 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
72293535 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
72293553 AA-TATTA
1 AATTATTA
72293560 CTGCATGTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:72293660 original size:3 final size:3
Alignment explanation
Indices: 72293652--72293676 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
72293642 TATTTATAAA
72293652 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
72293677 GATAGGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:72295149 original size:27 final size:27
Alignment explanation
Indices: 72295119--72295178 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
72295109 TTACTAAAAC
* *
72295119 ACCCCTAAGTATG-AAAATTACCGTTTT
1 ACCCCTAAG-ATGCAAAATGACCGTTAT
*
72295146 ACCCCT-AGGTGCAAAATGACCGTTAT
1 ACCCCTAAGATGCAAAATGACCGTTAT
72295172 ACCCCTA
1 ACCCCTA
72295179 GGGTTAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.71
27 6 0.21
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (27 bp):
ACCCCTAAGATGCAAAATGACCGTTAT
Found at i:72295654 original size:28 final size:27
Alignment explanation
Indices: 72295614--72295666 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
72295604 ACACTATAAG
* * *
72295614 GGGCTATGTCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAG-TTAACATTGATAT
72295642 GGGCTAAGGCCCAGTTAACATTGAT
1 GGGCTAAGGCCCAGTTAACATTGAT
72295667 TTTTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (27 bp):
GGGCTAAGGCCCAGTTAACATTGATAT
Found at i:72303989 original size:28 final size:28
Alignment explanation
Indices: 72303869--72303998 Score: 113
Period size: 28 Copynumber: 4.6 Consensus size: 28
72303859 TACATACATG
* * *
72303869 TGGCCCACTAGTCCCAATCTCATTTATA
1 TGGCCCATTAGGCCCAATCTCATTCATA
* *
72303897 CGGCCCATCT-GGCCCAAT-TCAAGTTCATG
1 TGGCCCAT-TAGGCCCAATCTC-A-TTCATA
* *
72303926 CGGCCCA-TAGGCCCAATTCACATTCATA
1 TGGCCCATTAGGCCCAA-TCTCATTCATA
*
72303954 TGGCCCATTAGGCCCAATCTCATTTATA
1 TGGCCCATTAGGCCCAATCTCATTCATA
**
72303982 TGGCCCATCCGGCCCAA
1 TGGCCCATTAGGCCCAA
72303999 ATCACATTAT
Statistics
Matches: 83, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
27 3 0.04
28 56 0.67
29 23 0.28
30 1 0.01
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCTCATTCATA
Found at i:72304008 original size:28 final size:29
Alignment explanation
Indices: 72303892--72304010 Score: 95
Period size: 28 Copynumber: 4.2 Consensus size: 29
72303882 CCAATCTCAT
* *
72303892 TTATACGGCCCATCTGGCCCAATTCA-AG
1 TTATACGGCCCATCAGGCCCAAATCACAG
* *
72303920 TTCATGCGGCCCAT-AGGCCCAATTCACA-
1 TT-ATACGGCCCATCAGGCCCAAATCACAG
* * * *
72303948 TTCATATGGCCCATTAGGCCC-AATCTCAT
1 TT-ATACGGCCCATCAGGCCCAAATCACAG
* *
72303977 TTATATGGCCCATCCGGCCCAAATCACA-
1 TTATACGGCCCATCAGGCCCAAATCACAG
72304005 TTATAC
1 TTATAC
72304011 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
28 51 0.67
29 25 0.33
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
TTATACGGCCCATCAGGCCCAAATCACAG
Found at i:72305928 original size:17 final size:17
Alignment explanation
Indices: 72305906--72305938 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
72305896 GATATGATAC
72305906 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
72305923 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
72305939 AATATGGGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:72305939 original size:18 final size:17
Alignment explanation
Indices: 72305906--72305939 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
72305896 GATATGATAC
*
72305906 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
72305923 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
72305940 ATATGGGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:72306298 original size:17 final size:19
Alignment explanation
Indices: 72306225--72306290 Score: 111
Period size: 17 Copynumber: 3.6 Consensus size: 19
72306215 ATCTTCTGAA
72306225 ATTGCATATCATATCTAAG
1 ATTGCATATCATATCTAAG
72306244 ATTGCA-ATCATATCTAAG
1 ATTGCATATCATATCTAAG
72306262 ATTG--TATCATATCTAAG
1 ATTGCATATCATATCTAAG
72306279 ATTGCATATCAT
1 ATTGCATATCAT
72306291 TGAAGATTAT
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
17 16 0.36
18 16 0.36
19 12 0.27
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
ATTGCATATCATATCTAAG
Found at i:72306446 original size:21 final size:19
Alignment explanation
Indices: 72306409--72306447 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
72306399 TTGGACTTTG
*
72306409 TTTTTTTTTTGGTTTATTA
1 TTTTTTTTTTGGCTTATTA
72306428 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGG-CTTATT
72306448 TTTGGGCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.10, C:0.03, G:0.13, T:0.74
Consensus pattern (19 bp):
TTTTTTTTTTGGCTTATTA
Found at i:72306695 original size:45 final size:44
Alignment explanation
Indices: 72306640--72306912 Score: 194
Period size: 45 Copynumber: 6.0 Consensus size: 44
72306630 GGAAGGCGAT
* * * *
72306640 ATCTGCTATCTTTGATCTGCTGCCCATTTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCT-CCCATCTAATACAGAGATGCCAA
*
72306685 ATCTGTTATCTTCGATTTGCTCTCCATCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTC-CCATCTAATACAGAGATGCCAA
* * * * **
72306730 ATTTGCT-TCTTCAATCTACTTCCTGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGC-TCCCATCTAATACAGAGATGCCAA
*
72306774 ATCTGTTATC-TCTGATTTGCTCCCCGA-CTAATACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCT-CCC-ATCTAATACAGAGATGCCAA
* * * * * * * * * *
72306819 ATCTGTAATCTTAGATATGCTTCGATGTAA-ACACGTGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCATCTAATACA-GAG-ATGCCAA
* * *
72306864 ATCTACTATGTCTTCGATCTGCTCCCCCTCTAATACAGAGATGCCAA
1 ATCT-GT-TATCTTCGATCTGCT-CCCATCTAATACAGAGATGCCAA
72306911 AT
1 AT
72306913 TATCTTGGAT
Statistics
Matches: 172, Mismatches: 42, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
43 4 0.02
44 44 0.26
45 95 0.55
46 2 0.01
47 17 0.10
48 7 0.04
49 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCCCATCTAATACAGAGATGCCAA
Found at i:72307225 original size:78 final size:78
Alignment explanation
Indices: 72306854--72307196 Score: 492
Period size: 78 Copynumber: 4.4 Consensus size: 78
72306844 TGTAAACACG
* * *
72306854 TGAAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCCTCTAATACAGAGATGCCAAATTATCTT
1 TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
72306919 GGATTTGCTTCAA
66 GGATCTGCTTCAA
* * * *
72306932 TGAAGGTCCA-ATCTGTTACGTCTTCGAACTTCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 TGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
72306996 TGGATCTGTTTCAA
65 TGGATCTGCTTCAA
**
72307010 TGAAGGTTCA-ATCTATTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 TGAAGG-TCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
*
72307074 TGGATCTACTTCAA
65 TGGATCTGCTTCAA
* ** * *
72307088 TGAAGGTCAGATCTGCTGTGTCTTCGATCCACTCTCTGTCTAATACAGAGATGCCAAATCATCTT
1 TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
72307153 GGATCTCCTTCAA
66 GGATCTGCTTCAA
72307166 TGAAGGTCAGATCTGCTATGTCTTCGATCTG
1 TGAAGGTCAGATCTGCTATGTCTTCGATCTG
72307197 TTCTCTGTCG
Statistics
Matches: 236, Mismatches: 26, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
77 3 0.01
78 230 0.97
79 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33
Consensus pattern (78 bp):
TGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
GGATCTGCTTCAA
Found at i:72307488 original size:78 final size:78
Alignment explanation
Indices: 72307307--72307609 Score: 387
Period size: 78 Copynumber: 3.8 Consensus size: 78
72307297 TGAAAGCCAA
*
72307307 ATCTGCTATGTCTTCGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTAATCTTGGATCT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC----ATCTTGGATCT
* *
72307372 GATTTAATGAAGGTCCA-
62 GCTTCAATGAAGGT-CAG
* **
72307389 ATCTGTTATGTCTTCGATCTGCTCTTCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
72307454 CAATGAAGGTCAG
66 CAATGAAGGTCAG
* * *
72307467 ATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
72307532 CAATGAAGGTAAG
66 CAATGAAGGTCAG
* ** ** *
72307545 ATCTGCTATGTCTTTGATCTGCTCCTTGTC-AACGCA-AGGATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGA-GATGCCAAATCATCTTGGATCTGCT
72307608 TC
65 TC
72307610 GATGTGAAGA
Statistics
Matches: 197, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
76 1 0.01
77 31 0.16
78 119 0.60
82 46 0.23
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
CAATGAAGGTCAG
Done.