Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 214 of 362
Found at i:72317615 original size:17 final size:17
Alignment explanation
Indices: 72317593--72317626 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
72317583 GATATGATAC
72317593 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
72317610 TAAAATATATAAAAAAT
1 TAAAATATATAAAAAAT
72317627 CTGAGAAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:72317916 original size:22 final size:21
Alignment explanation
Indices: 72317881--72317938 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
72317871 AAATGGTATC
* *
72317881 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
72317902 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
72317925 TGCATATCATATCT
1 TACAAATCATATCT
72317939 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:72317932 original size:17 final size:17
Alignment explanation
Indices: 72317910--72317961 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
72317900 ATTACAAAAT
72317910 CATATCTTTTAAGATTG
1 CATATCTTTTAAGATTG
*
72317927 CATATCATATCTAAGATTG
1 CATATC-T-TTTAAGATTG
* * *
72317946 TATATCATTGAAGATT
1 CATATCTTTTAAGATT
72317962 ATATTTCCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (17 bp):
CATATCTTTTAAGATTG
Found at i:72320590 original size:40 final size:40
Alignment explanation
Indices: 72320528--72320704 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
72320518 TATTCGGATG
** * *
72320528 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
* *
72320568 ATATTCGGGCTAAGTCCTGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
72320608 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
* * ** *
72320648 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
*
72320688 ATATCCGGG-TAAATCCC
1 ATATCCGGGCTAAGTCCC
72320705 AAAGATACTT
Statistics
Matches: 120, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 6 0.05
40 112 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
Found at i:72333887 original size:33 final size:33
Alignment explanation
Indices: 72333845--72333910 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
72333835 CATGAACTGT
*
72333845 ATGATTGATTGTGTGGACT-AGTTTAACTCTACG
1 ATGATTGATTGTGT-GAATGAGTTTAACTCTACG
72333878 ATGATTGATTGTGTGAATGAGTTTAACTCTACG
1 ATGATTGATTGTGTGAATGAGTTTAACTCTACG
72333911 GACGAGTTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.26, C:0.11, G:0.24, T:0.39
Consensus pattern (33 bp):
ATGATTGATTGTGTGAATGAGTTTAACTCTACG
Found at i:72338025 original size:20 final size:20
Alignment explanation
Indices: 72338002--72338039 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72337992 GTATTCAAAG
* *
72338002 AATTTTAGAATTTTTCATCA
1 AATTTTACAACTTTTCATCA
72338022 AATTTTACAACTTTTCAT
1 AATTTTACAACTTTTCAT
72338040 TTTAGTCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (20 bp):
AATTTTACAACTTTTCATCA
Found at i:72343884 original size:56 final size:56
Alignment explanation
Indices: 72343779--72343915 Score: 224
Period size: 56 Copynumber: 2.5 Consensus size: 56
72343769 CATCTCATGG
*
72343779 CAGGATTACCAGTCCAGGGTAAAT--CCCCCATATCACAAACTCATAAGGTGATGT
1 CAGGATTACCAGTCCAGGCTAAATCCCCCCCATATCACAAACTCATAAGGTGATGT
**
72343833 TGGGATTACCAGTCCAGGCTAAATCCCCCCCATATCACAAACTCATAAGGTGATGT
1 CAGGATTACCAGTCCAGGCTAAATCCCCCCCATATCACAAACTCATAAGGTGATGT
*
72343889 CAGGATTACTAGTCCAGGCTAAATCCC
1 CAGGATTACCAGTCCAGGCTAAATCCC
72343916 TTATAGCGAC
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
54 21 0.28
56 54 0.72
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (56 bp):
CAGGATTACCAGTCCAGGCTAAATCCCCCCCATATCACAAACTCATAAGGTGATGT
Found at i:72346836 original size:105 final size:101
Alignment explanation
Indices: 72346658--72346847 Score: 265
Period size: 105 Copynumber: 1.8 Consensus size: 101
72346648 GACAGATAAG
* *
72346658 ACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGTTGGGTTATGGCATTTCAGTGAA
1 ACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGCTGGGTTATGGCATCTCAGTGAA
72346723 AAGACCATAACTGGATTATGAAACCGTGAACGTAAA
66 AAGACCATAACTGGATTATGAAACCGTGAACGTAAA
* * *
72346759 ACCATGGTTGGACCATGGTAGTATGTGTATAAGTGTAAGACCATAGCTGGGTTATGGCATC-CTG
1 ACCATGGTTGGACCATGGAAATAT-T-TA-AA-TGTAAGACCATAGCTGGGTTATGGCATCTCAG
* *
72346823 ATGATAAGACCATAACTGGGTTATG
62 -TGAAAAGACCATAACTGGATTATG
72346848 GAATTATGAG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
101 22 0.29
102 1 0.01
103 2 0.03
104 4 0.05
105 48 0.62
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (101 bp):
ACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGCTGGGTTATGGCATCTCAGTGAA
AAGACCATAACTGGATTATGAAACCGTGAACGTAAA
Found at i:72346864 original size:33 final size:33
Alignment explanation
Indices: 72346790--72346868 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
72346780 TATGTGTATA
* * *
72346790 AGTGTAAGACCATAGCTGGGTTATGGCATCCTG
1 AGTGTAAGACCATAACTGGGTTATGGAATCATG
*
72346823 A-TGATAAGACCATAACTGGGTTATGGAATTATG
1 AGTG-TAAGACCATAACTGGGTTATGGAATCATG
72346856 AGTGTAAGACCAT
1 AGTGTAAGACCAT
72346869 GGCAGGGCCA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
32 2 0.05
33 36 0.90
34 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (33 bp):
AGTGTAAGACCATAACTGGGTTATGGAATCATG
Found at i:72346868 original size:105 final size:101
Alignment explanation
Indices: 72346654--72346870 Score: 256
Period size: 105 Copynumber: 2.1 Consensus size: 101
72346644 GAATGACAGA
* *
72346654 TAAGACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGTTGGGTTATGGCATTTCAG
1 TAAGACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGCTGGGTTATGGCATCTCAG
*
72346719 TGAAAAGACCATAACTGGATTATGAAACCGTGAACG
66 TGAAAAGACCATAACTGGATTATGAAACCATGAACG
* * *
72346755 TAAAACCATGGTTGGACCATGGTAGTATGTGTATAAGTGTAAGACCATAGCTGGGTTATGGCATC
1 TAAGACCATGGTTGGACCATGGAAATAT-T-TA-AA-TGTAAGACCATAGCTGGGTTATGGCATC
* * * * ** **
72346820 -CTGATGATAAGACCATAACTGGGTTATGGAATTATGAGTG
62 TCAG-TGAAAAGACCATAACTGGATTATGAAACCATGAACG
72346860 TAAGACCATGG
1 TAAGACCATGG
72346871 CAGGGCCATG
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
101 25 0.26
102 1 0.01
103 2 0.02
104 4 0.04
105 64 0.67
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGAAATATTTAAATGTAAGACCATAGCTGGGTTATGGCATCTCAG
TGAAAAGACCATAACTGGATTATGAAACCATGAACG
Found at i:72349077 original size:26 final size:25
Alignment explanation
Indices: 72349041--72349124 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 25
72349031 TGATACAAAT
72349041 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
*
72349067 TGATAATAGGTTAGGTAAATCTTTCA
1 TGATAATAGGTTAGGTAAAT-GTTCA
* *
72349093 TGATAATGGGTCAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
72349119 TGATAA
1 TGATAA
72349125 GAATTTCATG
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:72350775 original size:27 final size:27
Alignment explanation
Indices: 72350734--72350873 Score: 217
Period size: 27 Copynumber: 5.2 Consensus size: 27
72350724 GAGGAAGCGT
*
72350734 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
72350761 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
72350788 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
72350815 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * * *
72350842 TCTGGTGGCCCTGCCACGATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
72350869 TCTGG
1 TCTGG
72350874 CAGCCATGCT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.32
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:72354880 original size:26 final size:26
Alignment explanation
Indices: 72354844--72354953 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
72354834 TGATACAAAT
72354844 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
72354870 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
72354896 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
72354922 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
72354948 TGATAA
1 TGATAA
72354954 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:72356607 original size:27 final size:27
Alignment explanation
Indices: 72356566--72356731 Score: 228
Period size: 27 Copynumber: 6.2 Consensus size: 27
72356556 GAGGAAGCGT
*
72356566 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
72356593 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
72356620 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
72356647 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
72356674 TCTGGTGGC-CTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
72356701 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
72356727 TCTGG
1 TCTGG
72356732 CAGCCATGCT
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.14
27 103 0.81
28 6 0.05
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:72360012 original size:44 final size:44
Alignment explanation
Indices: 72359947--72360079 Score: 221
Period size: 44 Copynumber: 3.0 Consensus size: 44
72359937 ATTACATGTA
* *
72359947 TCGCATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCGATGAGCTCAGATGC
*
72359991 TCGCATCCATAATGAAATCAGACCAACTCGATGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCGATGAGCTCAGATGC
* *
72360035 TCGCATCCACAATGAACTCAGACCAACTCGATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAACTCGATGAGCTCAGATGC
72360079 T
1 T
72360080 TCACATATAC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAACTCGATGAGCTCAGATGC
Found at i:72363536 original size:43 final size:43
Alignment explanation
Indices: 72363377--72363539 Score: 156
Period size: 43 Copynumber: 3.8 Consensus size: 43
72363367 AATGGCAACG
* * *
72363377 TCCCAGACGTGGTCTTACATGTAATCACATGTCGATGCC-ACTA
1 TCCCAGACGTGGTCTTACACG-AAACACATATCGATGCCAACTA
* * *
72363420 TCCCAGACAG-GGTCTTACACGAATCACA-ATTACGATGCCGA-TG
1 TCCCAGAC-GTGGTCTTACACGAAACACATA-T-CGATGCCAACTA
* * *
72363463 TCCCAGACATGGTCTTACTCGAAATTACATATCGATGCCAACT-
1 TCCCAGACGTGGTCTTACACGAAA-CACATATCGATGCCAACTA
72363506 TCCCAGACGTGGTCTTACACGAGAACACATATCG
1 TCCCAGACGTGGTCTTACACGA-AACACATATCG
72363540 GAAATCTTAT
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
42 8 0.08
43 82 0.82
44 9 0.09
45 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAACACATATCGATGCCAACTA
Found at i:72365336 original size:15 final size:15
Alignment explanation
Indices: 72365316--72365346 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72365306 ATAAAATAAA
*
72365316 ATAAAATATAATTAC
1 ATAAAAAATAATTAC
72365331 ATAAAAAATAATTAC
1 ATAAAAAATAATTAC
72365346 A
1 A
72365347 AGCTAACCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAAAAAATAATTAC
Found at i:72365501 original size:4 final size:4
Alignment explanation
Indices: 72365492--72366040 Score: 431
Period size: 4 Copynumber: 139.8 Consensus size: 4
72365482 AAACAAATTT
* * * * * * *
72365492 CTCA CTCA CTCA CTCA CTCA CACA CACA CACA CACA CACA CTCT CTCT
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* *
72365540 CTTTCT CTCA CTCA CTCA CTCA CTCA CTCA CTCA CT-- CTCA CTCA CTCT
1 C--TCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * * * * * *
72365588 CTCT CTC- C-CC CTCCC CTCT CTCT CTCT CTCA --CA CTCA CTTA CTCA
1 CTCA CTCA CTCA CT-CA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* ** * * * *
72365633 CTCA CTCA CTCT CTTT CTCA CTCA TTCA CTCA CTCA CACA CACA CACA
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * * * * * * * *
72365681 CACA CACA CACA -T-A CACA TTCT CTCT CTCT CTCA CTCT CTCA CTCA
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* *
72365727 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CACT
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * *
72365775 CTCT CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCT CTCA CTCT
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * * *
72365823 CTCA CTCA CTCA CTCA CTCA CTCA CACA CACA CACA CACA CT-- CTCA
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * *
72365869 CTCA CTTA CTCA CTCA CTCT CTCA CCCA CTCA CTCA CTCA CTCA CTCA
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* ** * * * * * * * *
72365917 CTCA CTCA CTCT CTTT CTCA CACA CACT CTCT CTC- CCCT CTCT CTCT
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* * * *
72365964 CTCT CTCT CTCT CTCA CTCA CTCA CTCA CTCA CT-- CTCA TTCA CTCA
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTCA
* *
72366010 CTCA CTCA CTCA CTCA CTCA CACA CACA CTC
1 CTCA CTCA CTCA CTCA CTCA CTCA CTCA CTC
72366041 TCTCTTTCTC
Statistics
Matches: 474, Mismatches: 55, Indels: 32
0.84 0.10 0.06
Matches are distributed among these distances:
2 10 0.02
3 4 0.01
4 452 0.95
5 4 0.01
6 4 0.01
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.28
Consensus pattern (4 bp):
CTCA
Found at i:72365674 original size:2 final size:2
Alignment explanation
Indices: 72365667--72365698 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
72365657 TTCACTCACT
*
72365667 CA CA CA CA CA CA CA CA CA CA CA CA CA TA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
72365699 TTCTCTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.47, G:0.00, T:0.03
Consensus pattern (2 bp):
CA
Found at i:72366045 original size:4 final size:4
Alignment explanation
Indices: 72366038--72366080 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
72366028 CACACACACA
* *
72366038 CTCT CTCT TTCT CTCT CTCT CTCT CTCT CTCT ATCT CTCT CTC
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTC
72366081 ACTCAAACCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (4 bp):
CTCT
Found at i:72366053 original size:10 final size:10
Alignment explanation
Indices: 72366038--72366080 Score: 68
Period size: 10 Copynumber: 4.3 Consensus size: 10
72366028 CACACACACA
*
72366038 CTCTCTCTTT
1 CTCTCTCTCT
72366048 CTCTCTCTCT
1 CTCTCTCTCT
72366058 CTCTCTCTCT
1 CTCTCTCTCT
*
72366068 CTATCTCTCT
1 CTCTCTCTCT
72366078 CTC
1 CTC
72366081 ACTCAAACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (10 bp):
CTCTCTCTCT
Found at i:72366333 original size:21 final size:20
Alignment explanation
Indices: 72366309--72366380 Score: 56
Period size: 21 Copynumber: 3.5 Consensus size: 20
72366299 AAATAATAAC
*
72366309 TAAATAATAACTATATAGAAA
1 TAAATAATAA-TATATAAAAA
72366330 TAAA-AATATATATAATAAAAA
1 TAAATAATA-ATAT-ATAAAAA
* * *
72366351 TATATAAAAATAATATATAAA
1 TAAATAATAAT-ATATAAAAA
*
72366372 TAGATAATA
1 TAAATAATA
72366381 TAATTATAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
20 7 0.17
21 29 0.71
22 5 0.12
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.31
Consensus pattern (20 bp):
TAAATAATAATATATAAAAA
Found at i:72366348 original size:15 final size:14
Alignment explanation
Indices: 72366284--72366373 Score: 74
Period size: 15 Copynumber: 5.9 Consensus size: 14
72366274 AATAAATTCT
*
72366284 AAATATACTAAATAT
1 AAATATA-TAAATAA
72366299 AAATAATAACTAAATAA
1 AAAT-AT-A-TAAATAA
*
72366316 TAACTATATAGAAATAA
1 -AA--ATATATAAATAA
72366333 AAATATATATAATAA
1 AAATATATA-AATAA
72366348 AAATATATAAA-AA
1 AAATATATAAATAA
*
72366361 TAATATATAAATA
1 AAATATATAAATA
72366374 GATAATATAA
Statistics
Matches: 64, Mismatches: 4, Indels: 15
0.77 0.05 0.18
Matches are distributed among these distances:
13 12 0.19
14 9 0.14
15 18 0.28
16 4 0.06
17 14 0.22
18 3 0.05
19 2 0.03
20 2 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (14 bp):
AAATATATAAATAA
Found at i:72366355 original size:13 final size:12
Alignment explanation
Indices: 72366329--72366371 Score: 59
Period size: 13 Copynumber: 3.4 Consensus size: 12
72366319 CTATATAGAA
*
72366329 ATAAAAATATAT
1 ATAAAAAAATAT
72366341 ATAATAAAAATAT
1 ATAA-AAAAATAT
72366354 ATAAAAATAATAT
1 ATAAAAA-AATAT
72366367 ATAAA
1 ATAAA
72366372 TAGATAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 7 0.25
13 21 0.75
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATAAAAAAATAT
Found at i:72366372 original size:11 final size:11
Alignment explanation
Indices: 72366295--72366435 Score: 56
Period size: 11 Copynumber: 11.8 Consensus size: 11
72366285 AATATACTAA
72366295 ATATAAATAAT
1 ATATAAATAAT
72366306 A-ACTAAATAAT
1 ATA-TAAATAAT
* *
72366317 A-ACTATATAGAA
1 ATA-TAAATA-AT
*
72366329 ATAAAAATATAT
1 ATATAAATA-AT
72366341 ATAATAAA-AAT
1 AT-ATAAATAAT
72366352 ATATAAAAATAAT
1 ATAT--AAATAAT
72366365 ATATAAATAGAT
1 ATATAAATA-AT
*
72366377 A-ATATAATTAT
1 ATATA-AATAAT
72366388 AGCTAATATAATAAT
1 A--T-ATA-AATAAT
*
72366403 AGATAGAATAAT
1 ATATA-AATAAT
*
72366415 AAAATAAATAAT
1 -ATATAAATAAT
*
72366427 ATAGAAATA
1 ATATAAATA
72366436 TAGCACTCAC
Statistics
Matches: 102, Mismatches: 14, Indels: 28
0.71 0.10 0.19
Matches are distributed among these distances:
10 3 0.03
11 39 0.38
12 34 0.33
13 16 0.16
15 10 0.10
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (11 bp):
ATATAAATAAT
Found at i:72366378 original size:15 final size:14
Alignment explanation
Indices: 72366295--72366382 Score: 83
Period size: 15 Copynumber: 6.2 Consensus size: 14
72366285 AATATACTAA
72366295 ATATAAATAATAACT
1 ATATAAATAATAA-T
*
72366310 AAAT-AATAACT-AT
1 ATATAAATAA-TAAT
* *
72366323 ATAGAAATAAAAAT
1 ATATAAATAATAAT
*
72366337 ATATATAATAAAAAT
1 ATATA-AATAATAAT
72366352 ATATAAA-AATAAT
1 ATATAAATAATAAT
72366365 ATATAAATAGATAAT
1 ATATAAATA-ATAAT
72366380 ATA
1 ATA
72366383 ATTATAGCTA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
13 15 0.25
14 20 0.33
15 26 0.43
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (14 bp):
ATATAAATAATAAT
Found at i:72366389 original size:15 final size:15
Alignment explanation
Indices: 72366334--72366437 Score: 75
Period size: 15 Copynumber: 7.4 Consensus size: 15
72366324 TAGAAATAAA
*
72366334 AATATATATAATA-AA
1 AATATA-ATAATAGAT
*
72366349 AATAT-ATAA-AAAT
1 AATATAATAATAGAT
72366362 AATAT-ATAAATAGAT
1 AATATAAT-AATAGAT
* *
72366377 AATATAATTATAGCT
1 AATATAATAATAGAT
72366392 AATATAATAATAGAT
1 AATATAATAATAGAT
72366407 AGA-ATAATAA-A-AT
1 A-ATATAATAATAGAT
72366420 AA-ATAAT-ATAGA-
1 AATATAATAATAGAT
72366432 AATATA
1 AATATA
72366438 GCACTCACTC
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.01
12 10 0.13
13 19 0.25
14 3 0.04
15 39 0.52
16 3 0.04
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (15 bp):
AATATAATAATAGAT
Found at i:72366448 original size:4 final size:4
Alignment explanation
Indices: 72366439--72366615 Score: 142
Period size: 4 Copynumber: 44.2 Consensus size: 4
72366429 AGAAATATAG
* **
72366439 CACT CACT CACT CACT --CT CAATCT CACT CATT CACT CACT CACT TTCT
1 CACT CACT CACT CACT CACT C-A-CT CACT CACT CACT CACT CACT CACT
* * ** * * * * **
72366487 CTCT CTCT TTCT CATT CATT CACT CACT CACT CTCT CTCT TTCT CACT
1 CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT
* * * * ** *
72366535 CATT CACT CACT CACT CACT CACT CACC CTCT CTCT TTCT CACT CATT
1 CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT CACT
72366583 CACT CACT CACT CACT CACT CACT CACT CACT C
1 CACT CACT CACT CACT CACT CACT CACT CACT C
72366616 TTTCTCTCCC
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
2 2 0.01
4 139 0.96
5 1 0.01
6 3 0.02
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.36
Consensus pattern (4 bp):
CACT
Found at i:72366493 original size:36 final size:36
Alignment explanation
Indices: 72366439--72366599 Score: 187
Period size: 36 Copynumber: 4.4 Consensus size: 36
72366429 AGAAATATAG
* *
72366439 CACTCACTCACTCACTCTCAATCTCACTCATTCACT
1 CACTCACTCACTCTCTCTCATTCTCACTCATTCACT
** * *
72366475 CACTCACTTTCTCTCTCTCTTTCTCATTCATTCACT
1 CACTCACTCACTCTCTCTCATTCTCACTCATTCACT
* * *
72366511 CACTCACTCTCTCTCTTTCTCACTCATTCACTCACTCACT
1 CACTCACTCACTCTC--TCTCATTC--TCACTCATTCACT
* *
72366551 CACTCACTCACCCTCTCTCTTTCTCACTCATTCACT
1 CACTCACTCACTCTCTCTCATTCTCACTCATTCACT
72366587 CACTCACTCACTC
1 CACTCACTCACTC
72366600 ACTCACTCAC
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
36 68 0.65
38 12 0.12
40 24 0.23
ACGTcount: A:0.19, C:0.45, G:0.00, T:0.37
Consensus pattern (36 bp):
CACTCACTCACTCTCTCTCATTCTCACTCATTCACT
Found at i:72366518 original size:44 final size:42
Alignment explanation
Indices: 72366462--72366603 Score: 165
Period size: 40 Copynumber: 3.5 Consensus size: 42
72366452 ACTCTCAATC
*
72366462 TCACTCATTCACTCACTCACTTTCTCTCTCTCTTTCTCATTCAT
1 TCACTCACTCACTCACTCAC--TCTCTCTCTCTTTCTCATTCAT
** *
72366506 TCACTCACTCACT--CT--CTCTCT-T-TCTCACTCATTCAC
1 TCACTCACTCACTCACTCACTCTCTCTCTCTTTCTCATTCAT
*
72366542 TCACTCACTCACTCACTCAC-C-CTCTCTCTTTCTCACTCAT
1 TCACTCACTCACTCACTCACTCTCTCTCTCTTTCTCATTCAT
72366582 TCACTCACTCACTCACTCACTC
1 TCACTCACTCACTCACTCACTC
72366604 ACTCACTCAC
Statistics
Matches: 83, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
36 24 0.29
37 1 0.01
38 9 0.11
39 2 0.02
40 32 0.39
41 1 0.01
42 2 0.02
44 12 0.14
ACGTcount: A:0.18, C:0.44, G:0.00, T:0.38
Consensus pattern (42 bp):
TCACTCACTCACTCACTCACTCTCTCTCTCTTTCTCATTCAT
Found at i:72366604 original size:44 final size:44
Alignment explanation
Indices: 72366497--72366621 Score: 196
Period size: 44 Copynumber: 2.8 Consensus size: 44
72366487 CTCTCTCTTT
* * *
72366497 CTCATTCATTCACTCACTCACTCTCTCTCTTTCTCACTCATTCA
1 CTCACTCACTCACTCACTCACCCTCTCTCTTTCTCACTCATTCA
72366541 CTCACTCACTCACTCACTCACCCTCTCTCTTTCTCACTCATTCA
1 CTCACTCACTCACTCACTCACCCTCTCTCTTTCTCACTCATTCA
*
72366585 CTCACTCACTCACTCACTCACTCACTCACTCTTTCTC
1 CTCACTCACTCACTCACTCAC-C-CTCTCTCTTTCTC
72366622 TCCCCCTCTC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
44 62 0.83
45 1 0.01
46 12 0.16
ACGTcount: A:0.18, C:0.46, G:0.00, T:0.36
Consensus pattern (44 bp):
CTCACTCACTCACTCACTCACCCTCTCTCTTTCTCACTCATTCA
Found at i:72366641 original size:2 final size:2
Alignment explanation
Indices: 72366613--72368209 Score: 821
Period size: 2 Copynumber: 828.5 Consensus size: 2
72366603 CACTCACTCA
* * * *
72366613 CT CT TT CT CT CC CC CT CT CC CT C- CT CT CT CT C- CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
72366653 CT CT C- CT C- CT CT CT CT CT CT CT CT CT CT CT CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
72366693 CC CT CT CT CT CT CC CT CT CT AC- CT CT CT CT CT CT CT CT CC CT
1 CT CT CT CT CT CT CT CT CT CT -CT CT CT CT CT CT CT CT CT CT CT
* * * * * *
72366735 CT CT CC CT CT CC CT CC CT CA CT CT CC CT CT TT CT CT CT CT -T
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
72366776 C- CT CT CC CT CT CT CA CT -T C- CT CT -T C- CT CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72366813 CT CA CAT -T CT CT CT CT CT CT CC CT -T CC CC CT CT CT CT CT CT
1 CT CT C-T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * ** * * * * * * * * * *
72366854 CT CA CT CA AA CA CA CA CA CA CA CA CA CC CT CT CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72366896 CC CT CT -T C- CT CT CT CA CT C- CT CT CC CT CT TT GC- CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -CT CT CT CT
* * * *
72366935 CC CT CT CT CT C- CT -T CT CT CT CT CC CT CC CT -T C- CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * * * * * * * *
72366973 CT CC CT CC CT CC CT CC CT GT CT CT CA CT CA CT CA CA CA CA CA
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * * * * *
72367015 CA CA CA CT CT CT CT CT CT CT CT TT CC CC CT CC CT CC CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * *
72367057 C- CT -T CT CC CT CT CT CC CT CT CC CT CC CT CC CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367097 CT CT CT CT CT CT TT CT CT CC CT CT CT CT CC CT CC CT CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * * * * * * * *
72367139 CT CT CT AT CT TT TT CC CT CT -T C- CC CC CA CA CA CA CA CA CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * *
72367179 CT CT CT CA CT CT CT C- CT -T TT C- CT CC CT CC CT CC CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367218 CT C- CT C- CT CC CT C- CT CT CT CT CT AT CT CT CT CA CT CA CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367257 CC CT CT CT CC CT CT CC CT CT CC CT CT CT CT CT C- CT CT CT C-
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
72367297 CT CT CT CT CT CC CC CT CT C- CT C- CT CT CT CT C- CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367336 CT CT CT C- CT CT CT CT CC CC CC CC CT CC CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367377 C- CT CC CT CT CC CT C- CT C- CT CT CT C- CT CT CC CT CT -T CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367414 CT CT CT CT CT CT CT CC CT -T CT TT CT CT TT CT CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* *
72367455 CT CT CT CT CT CC CT CT CC CT CT C- CT C- CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367495 CT CC CC CT C- CC CT CT CC CT CT CT C- CC CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367535 -T C- CC CC CT CT CT CT CT CT -T CC CT CT CAT -T CT CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C-T CT CT CT CT CT CT
* * * * * * * *
72367574 C- CC CC CT CC CT TT C- CC CT CT CC CT CT CT CT CT CC CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367614 CT CC CT CT CC CT CT CC CT CT CT CT CT CT CA CT CT C- CT TT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367655 TT CT CT CT CC CT CT CT CC CT CT CT CT CT CT CT CC CT AT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * * *
72367697 CT CT CC CT CT CC CT CT CT CT CT CC CT CT CC CT CT CC CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367739 CC CT CT CC CT CT TT CT CT CT CT -T C- CT CT CC CT CT CT CA CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367779 -T C- CT CT -T C- CT CT CC CT CT CT CC CT CT CT CT CC CT CA CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72367817 CT -T ACT CA CT CA CT CT CT CC CT CT -T C- CT CT CC CT CT CT CT
1 CT CT -CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72367857 CT CT CT CT CC CC CT CT CT CT CT CT TT CC CT CT CAT -T CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C-T CT CT CT CT
* * * * * *
72367899 CT CT CT C- CC CT CC CT CT CC CC CT CT CC CT CT CT CT CT CT CC
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
72367940 CT CC CT CT CT CT CT CT CT CT CA CT CT CT CT CA CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * *
72367982 TT CT CC CT CC CT CT C- CAT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT C-T CT CT CT CT CT CT CT CT CT CT CT CT
* *
72368024 CT CT CT CT CT CC CT CT C- CAT CT C- CAT CT CT CT CT CT CC CT CT
1 CT CT CT CT CT CT CT CT CT C-T CT CT C-T CT CT CT CT CT CT CT CT
* * * * * * *
72368066 CT CC CG CT TT CT CT CT CC CC CT CT CT CT CT CC CT CT CT TT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * * *
72368108 CT CT CA CT CT CT CT CT CT CT CC CC CT CT CT CT CT C- CC CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
* * * *
72368149 CT CC CT CT CC CC CT CT CT CT CT CT CT CC CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
72368191 TT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT C
72368210 ATGTTAAATT
Statistics
Matches: 1207, Mismatches: 310, Indels: 156
0.72 0.19 0.09
Matches are distributed among these distances:
1 69 0.06
2 1131 0.94
3 7 0.01
ACGTcount: A:0.03, C:0.57, G:0.00, T:0.39
Consensus pattern (2 bp):
CT
Found at i:72369684 original size:6 final size:6
Alignment explanation
Indices: 72369673--72369704 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
72369663 ATCAAGAGTT
72369673 TAAATA TAAATA TAAATA TAAATA TAAATA TA
1 TAAATA TAAATA TAAATA TAAATA TAAATA TA
72369705 TAATTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
TAAATA
Found at i:72382166 original size:27 final size:28
Alignment explanation
Indices: 72382136--72382216 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 28
72382126 CTTTTCTGGT
*
72382136 GAACCATGAAAGGATAGCCTCTGTGGC-
1 GAACCATGAAAGGATAGCCTTTGTGGCG
* * * *
72382163 GAACCTTGCAATGATAGACTTTGTGGCG
1 GAACCATGAAAGGATAGCCTTTGTGGCG
*
72382191 GAA-TATGAAAGGA-ATGCCTTTGTGGC
1 GAACCATGAAAGGATA-GCCTTTGTGGC
72382217 AAACTCCATA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 1 0.02
27 38 0.90
28 3 0.07
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (28 bp):
GAACCATGAAAGGATAGCCTTTGTGGCG
Found at i:72387754 original size:20 final size:19
Alignment explanation
Indices: 72387700--72387759 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 19
72387690 GTCATTAGAC
72387700 TAATTAATATATAGATT-AAT
1 TAATTAAT-TAT-GATTAAAT
*
72387720 TAAGTTAAATCATGATTAAGAT
1 TAA-TT-AATTATGATTAA-AT
72387742 TAATTAATTATGATTAAA
1 TAATTAATTATGATTAAA
72387760 CATGTTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 1 0.03
20 18 0.53
21 7 0.21
22 8 0.24
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (19 bp):
TAATTAATTATGATTAAAT
Found at i:72389621 original size:42 final size:42
Alignment explanation
Indices: 72389563--72389735 Score: 170
Period size: 42 Copynumber: 4.1 Consensus size: 42
72389553 ACATTAGGGT
*
72389563 TATGAG-TTTACATGTAAGACCATATCTGGGATATGGCATTGT
1 TATGAGATTT-CATGTAAGACCATATCTGGGATATGGCATTGA
* * *
72389605 TATGAGATTTCGTGTAAGACTATGTCTGGGATATGGCATTGA
1 TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
* * * * * **
72389647 TATGAGA-ATCGTGTAAGACCATTTTTGGGCTATTGGCATCAA
1 TATGAGATTTCATGTAAGACCATATCTGGGATA-TGGCATTGA
* ** * *
72389689 TGTGAGATCCCATGTAAGACCATATCTGGGATATGGTATTGG
1 TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
72389731 TATGA
1 TATGA
72389736 TTCTATGTGT
Statistics
Matches: 105, Mismatches: 23, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
41 20 0.19
42 63 0.60
43 22 0.21
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGATATGGCATTGA
Found at i:72390356 original size:24 final size:22
Alignment explanation
Indices: 72390329--72390376 Score: 53
Period size: 24 Copynumber: 2.1 Consensus size: 22
72390319 ATGCCCTTGA
72390329 GATGTGGTT-TGTGATTGTGTATAT
1 GATG-GGTTATGTGATTG-GT-TAT
*
72390353 GATGGGTTATGTTATTGGTTAT
1 GATGGGTTATGTGATTGGTTAT
72390375 GA
1 GA
72390377 ATGTCTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 11 0.50
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (22 bp):
GATGGGTTATGTGATTGGTTAT
Found at i:72393289 original size:28 final size:29
Alignment explanation
Indices: 72393257--72393311 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
72393247 CACGGGCGAT
*
72393257 GACACGGGCGTGT-TTAGGCCGTGTGAGG
1 GACACGGGCATGTGTTAGGCCGTGTGAGG
*
72393285 GACACGGGCATGTGTTCGGCCGTGTGA
1 GACACGGGCATGTGTTAGGCCGTGTGA
72393312 AAACCTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.15, C:0.20, G:0.44, T:0.22
Consensus pattern (29 bp):
GACACGGGCATGTGTTAGGCCGTGTGAGG
Found at i:72406320 original size:28 final size:28
Alignment explanation
Indices: 72406289--72406404 Score: 86
Period size: 28 Copynumber: 4.4 Consensus size: 28
72406279 AACAACATTT
72406289 AATACATAAATGATATATACAATATAAA
1 AATACATAAATGATATATACAATATAAA
* * *
72406317 AATATATAAAAGA-ATTAGTA-TATATAAA
1 AATACATAAATGATA-TA-TACAATATAAA
* * **
72406345 AAT--ATAAA--ATA-AAACAACAT-TT
1 AATACATAAATGATATATACAATATAAA
72406367 AATACATAAATGATATATACAATATAAA
1 AATACATAAATGATATATACAATATAAA
*
72406395 AATATATAAA
1 AATACATAAA
72406405 AGAATTAGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
22 4 0.06
23 4 0.06
24 6 0.09
25 1 0.02
26 8 0.12
27 8 0.12
28 32 0.49
29 2 0.03
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.29
Consensus pattern (28 bp):
AATACATAAATGATATATACAATATAAA
Found at i:72406322 original size:8 final size:9
Alignment explanation
Indices: 72406301--72406433 Score: 52
Period size: 8 Copynumber: 15.3 Consensus size: 9
72406291 TACATAAATG
*
72406301 ATATATACA
1 ATATATAAA
72406310 ATATA-AAA
1 ATATATAAA
72406318 ATATATAAA
1 ATATATAAA
* **
72406327 AGA-ATTAGT
1 ATATA-TAAA
72406336 ATATATAAA
1 ATATATAAA
72406345 A-ATATAAA
1 ATATATAAA
72406353 ATA-A-AACA
1 ATATATAA-A
* *
72406361 ACAT-T-TA
1 ATATATAAA
*
72406368 ATACATAAA
1 ATATATAAA
*
72406377 TGATATATACA
1 --ATATATAAA
72406388 ATATA-AAA
1 ATATATAAA
72406396 ATATATAAA
1 ATATATAAA
* **
72406405 AGA-ATTAGT
1 ATATA-TAAA
72406414 ATATATAAA
1 ATATATAAA
72406423 A-ATATAAA
1 ATATATAAA
72406431 ATA
1 ATA
72406434 AAGTGAGTAA
Statistics
Matches: 88, Mismatches: 21, Indels: 30
0.63 0.15 0.22
Matches are distributed among these distances:
7 5 0.06
8 37 0.42
9 37 0.42
10 2 0.02
11 7 0.08
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (9 bp):
ATATATAAA
Found at i:72406375 original size:78 final size:78
Alignment explanation
Indices: 72406275--72406435 Score: 322
Period size: 78 Copynumber: 2.1 Consensus size: 78
72406265 AATAATAATT
72406275 ATAAAACAACATTTAATACATAAATGATATATACAATATAAAAATATATAAAAGAATTAGTATAT
1 ATAAAACAACATTTAATACATAAATGATATATACAATATAAAAATATATAAAAGAATTAGTATAT
72406340 ATAAAAATATAAA
66 ATAAAAATATAAA
72406353 ATAAAACAACATTTAATACATAAATGATATATACAATATAAAAATATATAAAAGAATTAGTATAT
1 ATAAAACAACATTTAATACATAAATGATATATACAATATAAAAATATATAAAAGAATTAGTATAT
72406418 ATAAAAATATAAA
66 ATAAAAATATAAA
72406431 ATAAA
1 ATAAA
72406436 GTGAGTAATT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (78 bp):
ATAAAACAACATTTAATACATAAATGATATATACAATATAAAAATATATAAAAGAATTAGTATAT
ATAAAAATATAAA
Found at i:72406824 original size:16 final size:16
Alignment explanation
Indices: 72406777--72406824 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
72406767 TTTTAAAATT
72406777 ATAAATAATATAAT-G
1 ATAAATAATATAATAG
* *
72406792 ---AATAATATAAAAC
1 ATAAATAATATAATAG
72406805 ATAAATAATATAATAG
1 ATAAATAATATAATAG
72406821 ATAA
1 ATAA
72406825 TATACATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
12 10 0.40
16 15 0.60
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (16 bp):
ATAAATAATATAATAG
Found at i:72406840 original size:28 final size:29
Alignment explanation
Indices: 72406772--72406849 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
72406762 ACAAATTTTA
72406772 AAATTATAAATAATATAAT-GAATAATAT
1 AAATTATAAATAATATAATAGAATAATAT
**
72406800 AAAACATAAATAATATAATAG-ATAATAT
1 AAATTATAAATAATATAATAGAATAATAT
* *
72406828 ACATTATACATAACATATAATA
1 AAATTATAAAT-A-ATATAATA
72406850 AAAAAATAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 31 0.76
29 2 0.05
30 8 0.20
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (29 bp):
AAATTATAAATAATATAATAGAATAATAT
Found at i:72406858 original size:11 final size:11
Alignment explanation
Indices: 72406842--72406884 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
72406832 TATACATAAC
72406842 ATATAATAAAA
1 ATATAATAAAA
* *
72406853 AAATAAGT-AAT
1 ATATAA-TAAAA
72406864 ATATAATAAAA
1 ATATAATAAAA
72406875 ATATAATAAA
1 ATATAATAAA
72406885 TGTTATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (11 bp):
ATATAATAAAA
Found at i:72406882 original size:25 final size:24
Alignment explanation
Indices: 72406781--72406918 Score: 83
Period size: 25 Copynumber: 5.7 Consensus size: 24
72406771 AAAATTATAA
*
72406781 ATAATATAATGAATA-AT-ATAAAAC
1 ATAATA-AAT-AATATATAATAAAAT
* *
72406805 ATAAATAATATAATAGATAATATACAT
1 AT-AATAA-ATAATATATAATA-AAAT
* *
72406832 -T-ATACATAACATATAATAAAA-
1 ATAATAAATAATATATAATAAAAT
*
72406853 A-AATAAGTAATATATAATAAAAAT
1 ATAATAAATAATATATAAT-AAAAT
**
72406877 ATAATAAATGTTATATAATAAAAT
1 ATAATAAATAATATATAATAAAAT
72406901 ATAATGTAAAT-ATATATA
1 ATAA--TAAATAATATATA
72406919 GGAAAATAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 23
0.71 0.10 0.18
Matches are distributed among these distances:
22 15 0.17
23 15 0.17
24 20 0.22
25 28 0.31
26 9 0.10
27 2 0.02
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (24 bp):
ATAATAAATAATATATAATAAAAT
Found at i:72406928 original size:47 final size:44
Alignment explanation
Indices: 72406842--72406944 Score: 104
Period size: 47 Copynumber: 2.3 Consensus size: 44
72406832 TATACATAAC
*
72406842 ATATAATAAAAAAATAAGTAATATATAATAAAAATATAATAAATG
1 ATATAAT-AAAATATAAGTAATATATAATAAAAATATAATAAATG
* *
72406887 TTATATAATAAAATATAATGTAA-ATATATATAGGAAA-ATAATATATG
1 --ATATAATAAAATATAA-GTAATATATA-ATA-AAAATATAATAAATG
72406934 ATA-AATAAAAT
1 ATATAATAAAAT
72406945 TTTTTATACA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
44 8 0.16
45 3 0.06
46 13 0.26
47 23 0.46
48 3 0.06
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (44 bp):
ATATAATAAAATATAAGTAATATATAATAAAAATATAATAAATG
Found at i:72406939 original size:14 final size:14
Alignment explanation
Indices: 72406855--72406941 Score: 53
Period size: 14 Copynumber: 6.6 Consensus size: 14
72406845 TAATAAAAAA
* *
72406855 ATAAGTAATATATA
1 ATAAATAATATATG
72406869 ATAAA-AATATA--
1 ATAAATAATATATG
** *
72406880 ATAAATGTTATATA
1 ATAAATAATATATG
72406894 AT-AA-AATATAATG
1 ATAAATAATAT-ATG
*
72406907 -TAAATATATATAGG
1 ATAAATA-ATATATG
72406921 A-AAATAATATATG
1 ATAAATAATATATG
72406934 ATAAATAA
1 ATAAATAA
72406942 AATTTTTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
11 5 0.09
12 8 0.14
13 19 0.34
14 20 0.36
15 4 0.07
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
ATAAATAATATATG
Found at i:72406972 original size:26 final size:26
Alignment explanation
Indices: 72406924--72406987 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
72406914 ATATAGGAAA
*
72406924 ATAAT-ATATGATAAATAAAATTTTTT
1 ATAATAATAT-ATAAATAAAATTTTTG
**
72406950 ATACA-AATATATAAATAGTATTTTTG
1 ATA-ATAATATATAAATAAAATTTTTG
72406976 ATAATAATATAT
1 ATAATAATATAT
72406988 GTATAGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 1 0.03
26 26 0.81
27 5 0.16
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.44
Consensus pattern (26 bp):
ATAATAATATATAAATAAAATTTTTG
Found at i:72407005 original size:24 final size:26
Alignment explanation
Indices: 72406955--72407006 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
72406945 TTTTTATACA
*
72406955 AATATATAAATAGTATTTTTGATAAT
1 AATATATAAATAGTATTTTTGAAAAT
**
72406981 AATATATGTATAGT-TTTTT-AAAAT
1 AATATATAAATAGTATTTTTGAAAAT
72407005 AA
1 AA
72407007 ATAAATTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 5 0.22
26 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (26 bp):
AATATATAAATAGTATTTTTGAAAAT
Found at i:72409125 original size:206 final size:206
Alignment explanation
Indices: 72408586--72409165 Score: 948
Period size: 205 Copynumber: 2.8 Consensus size: 206
72408576 CTGCTTCTTT
* * * * **
72408586 GATTTGTTCTCTGACAATACACAGATACCAAATCATCTTAGATTTGCTTCAGCATAAGTACACGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAGCACGTGA
* *
72408651 AAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCATAAGGATACCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
* * * * *
72408716 CTGCTTCAGTCTAATCATCTGAAAGTTAGATCTGCTATGTGTCTGCCCTTCGTCGAATATGGAGA
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGA
72408781 CGCCAAACTTC
196 CGCCAAACTTC
*
72408792 GATTTGTTCTCTGACAATACAGAGATG-CAAATCATCTTAGATTTGCTTCAACGTAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAGCACGTGA
72408856 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
* *
72408921 TTGCTTCAGTATAAACATCTGAAGGTTGGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGA
131 CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGA
72408986 CGCCAAACTTC
196 CGCCAAACTTC
*
72408997 GATTTGTTCTCTGACAATACAGAGATGCCAAACCATCTTAGATTTGCTTCAACATAAGCACGTGA
1 GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAGCACGTGA
*
72409062 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGAT
66 AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
* * *
72409127 CGGCTTTAGTATAAACATCTGAA-GTCCAGATCTGCTATG
131 CTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCTATG
72409166 CCGTGGCCTA
Statistics
Matches: 348, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
205 193 0.55
206 155 0.45
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (206 bp):
GATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACATAAGCACGTGA
AAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGAT
CTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATGGAGA
CGCCAAACTTC
Found at i:72417112 original size:14 final size:15
Alignment explanation
Indices: 72417065--72417114 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
72417055 ATAACTTTGA
*
72417065 ATGCAAACG-ATGCG
1 ATGCAAACGCATGAG
*
72417079 ATG-AAATGCTATGAG
1 ATGCAAACGC-ATGAG
72417094 ATGCAAACGCATG-G
1 ATGCAAACGCATGAG
72417108 ATGCAAA
1 ATGCAAA
72417115 AAGGGTATCG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 4 0.13
14 11 0.37
15 10 0.33
16 5 0.17
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.18
Consensus pattern (15 bp):
ATGCAAACGCATGAG
Found at i:72419789 original size:22 final size:22
Alignment explanation
Indices: 72419764--72419807 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
72419754 AGACAAGAGA
72419764 TAATCAATTACACGGCCTGACT
1 TAATCAATTACACGGCCTGACT
72419786 TAATCAATTACACGGCCTGACT
1 TAATCAATTACACGGCCTGACT
72419808 CTCTTATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (22 bp):
TAATCAATTACACGGCCTGACT
Found at i:72421226 original size:16 final size:16
Alignment explanation
Indices: 72421179--72421226 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
72421169 TTTTAAAATT
72421179 ATAAATAATATAAT-G
1 ATAAATAATATAATAG
* *
72421194 ---AATAATATAAAAC
1 ATAAATAATATAATAG
72421207 ATAAATAATATAATAG
1 ATAAATAATATAATAG
72421223 ATAA
1 ATAA
72421227 TATACGTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
12 10 0.40
16 15 0.60
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (16 bp):
ATAAATAATATAATAG
Found at i:72421271 original size:11 final size:11
Alignment explanation
Indices: 72421244--72421318 Score: 64
Period size: 11 Copynumber: 6.5 Consensus size: 11
72421234 TATACATAAC
*
72421244 ATATAATAAAA
1 ATATAATAAAT
*
72421255 AAATAAGT-AAT
1 ATATAA-TAAAT
72421266 ATATAATAAAT
1 ATATAATAAAT
72421277 ATATAATAAATATT
1 ATATAAT-AA-A-T
72421291 ATATAATAAA-
1 ATATAATAAAT
72421301 ATATAATGTAAAT
1 ATATAA--TAAAT
72421314 ATATA
1 ATATA
72421319 TAGGAAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
10 7 0.13
11 22 0.42
12 8 0.15
13 8 0.15
14 8 0.15
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
ATATAATAAAT
Found at i:72421318 original size:25 final size:24
Alignment explanation
Indices: 72421244--72421320 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 24
72421234 TATACATAAC
*
72421244 ATATAATAAA-A-A-AATAAGTAAT
1 ATATAATAAATATATAATAAAT-AT
72421266 ATATAATAAATATATAATAAATATT
1 ATATAATAAATATATAATAAATA-T
72421291 ATATAATAAA-ATATAATGTAAATAT
1 ATATAATAAATATATAA--TAAATAT
72421316 ATATA
1 ATATA
72421321 GGAAAATAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
22 10 0.21
23 1 0.02
24 8 0.17
25 23 0.48
26 6 0.12
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (24 bp):
ATATAATAAATATATAATAAATAT
Found at i:72421375 original size:26 final size:25
Alignment explanation
Indices: 72421336--72421411 Score: 64
Period size: 26 Copynumber: 3.0 Consensus size: 25
72421326 ATAATATTTG
* *
72421336 ATAAATAAATTTTTTTATATAAATAT
1 ATAAAT-AGTTTTTTAATATAAATAT
*
72421362 ATAAATAGTATTTTTGATA-ATAATAT
1 ATAAATAGT-TTTTTAATATA-AATAT
** *
72421388 ATGTATAGTTTTTTAAAATAAATA
1 ATAAATAGTTTTTTAATATAAATA
72421412 AATTATATAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 14 0.34
26 27 0.66
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (25 bp):
ATAAATAGTTTTTTAATATAAATAT
Found at i:72422947 original size:17 final size:17
Alignment explanation
Indices: 72422921--72422961 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
72422911 TATATTCAGT
72422921 TAAT-ATTAAACTT-ATA
1 TAATAATTAAA-TTCATA
72422937 TAATAATTAAATTCATA
1 TAATAATTAAATTCATA
*
72422954 TATTAATT
1 TAATAATT
72422962 TTAACTGTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATAATTAAATTCATA
Found at i:72424550 original size:6 final size:6
Alignment explanation
Indices: 72424539--72424567 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
72424529 AGAATGCTAG
72424539 AAATAA AAATAA AAATAA AAATAA AAATA
1 AAATAA AAATAA AAATAA AAATAA AAATA
72424568 GGCGGTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:72434580 original size:39 final size:39
Alignment explanation
Indices: 72434526--72434605 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
72434516 ATAATATGAC
* *
72434526 ATTTTACACATATATTTCCTATGTAGTTGATTATACACA
1 ATTTTACACATATATTTCCTATATAGCTGATTATACACA
*
72434565 ATTTTACACATATATTTCCTATATAGCTGATTATAGACA
1 ATTTTACACATATATTTCCTATATAGCTGATTATACACA
72434604 AT
1 AT
72434606 CACACATATG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.42
Consensus pattern (39 bp):
ATTTTACACATATATTTCCTATATAGCTGATTATACACA
Found at i:72435871 original size:16 final size:16
Alignment explanation
Indices: 72435852--72435882 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72435842 CTTCTTCACT
72435852 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
72435868 TACTTACTTACTTAA
1 TACTCACTTACTTAA
72435883 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:72435888 original size:20 final size:20
Alignment explanation
Indices: 72435849--72435888 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72435839 AAACTTCTTC
* *
72435849 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
72435869 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
72435889 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:72435999 original size:23 final size:24
Alignment explanation
Indices: 72435961--72436005 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
72435951 TTTGCTCATC
*
72435961 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
72435985 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
72436006 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:72436201 original size:53 final size:52
Alignment explanation
Indices: 72436084--72436328 Score: 225
Period size: 55 Copynumber: 4.6 Consensus size: 52
72436074 CTTACCATTT
* * * *
72436084 CCATGACTTGTCATGGTCTTA-AGTGGTATCCTT---TT-GAAACTTACCATTG
1 CCATGCCTTGGCATGGTCTTACA-TGGTATCCTTGCCTTATAAACTTA-CAATG
* * *
72436133 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTCACGAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAACTTAC-AATG
*
72436186 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTATA--AACTTA-CAATG
* * * * *
72436241 CCATGTC-TGGATATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAATTG
1 CCATGCCTTGG-CATGGTCTTACATGGTATCCTTGCCTTATAAA-CTTA-CAA-TG
72436296 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
72436329 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 20, Indels: 24
0.79 0.10 0.12
Matches are distributed among these distances:
49 29 0.18
50 1 0.01
52 5 0.03
53 46 0.29
54 10 0.06
55 64 0.40
56 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (52 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAAACTTACAATG
Found at i:72436273 original size:108 final size:110
Alignment explanation
Indices: 72436121--72436321 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
72436111 ATCCTTTTGA
* * * * *
72436121 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAA-CTCACGAA-
1 AACTTACCAATGCCATGTCTGGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
72436184 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
72436229 AACTTATCAATGCCATGTCTGGATATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTGGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
72436294 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
72436322 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 48 0.59
109 6 0.07
110 28 0.34
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTGGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:72436448 original size:22 final size:22
Alignment explanation
Indices: 72436422--72436466 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
72436412 TGCTTGAGTC
72436422 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
72436444 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
72436466 T
1 T
72436467 AAATATACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (22 bp):
TTCTTTGAATAATTTCATAAAA
Found at i:72443364 original size:22 final size:22
Alignment explanation
Indices: 72443339--72443405 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
72443329 TGCTTAAGTC
72443339 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
72443361 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
72443383 TTCTTTGAATAATTTCATAAAA
1 TTCTTTGAATAATTTCATAAAA
72443405 T
1 T
72443406 AAATATACAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.46
Consensus pattern (22 bp):
TTCTTTGAATAATTTCATAAAA
Found at i:72445791 original size:12 final size:13
Alignment explanation
Indices: 72445774--72445810 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
72445764 TTTGAGTTAT
72445774 CATATAATA-TAA
1 CATATAATACTAA
72445786 CATAT-ATACTAA
1 CATATAATACTAA
72445798 CATAT-ATACTAA
1 CATATAATACTAA
72445810 C
1 C
72445811 TTATTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 3 0.12
12 21 0.88
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
CATATAATACTAA
Found at i:72447154 original size:23 final size:23
Alignment explanation
Indices: 72447101--72447147 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
72447091 GCTAGATCTT
*
72447101 TCCTAAATATTATCAGTAAATAA
1 TCCTAAATATTATCACTAAATAA
*
72447124 TCCTAAATATTATCACTATATAA
1 TCCTAAATATTATCACTAAATAA
72447147 T
1 T
72447148 TTAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:72456449 original size:20 final size:18
Alignment explanation
Indices: 72456401--72456449 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
72456391 TTCAAAAAAT
72456401 AAAATAAAAACAAATTTG
1 AAAATAAAAACAAATTTG
*
72456419 AAAATCCAAAAATAAATTTAAG
1 AAAAT--AAAAACAAATTT--G
72456441 AAAATAAAA
1 AAAATAAAA
72456450 GAAATGGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.19
20 15 0.58
22 6 0.23
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.20
Consensus pattern (18 bp):
AAAATAAAAACAAATTTG
Found at i:72457332 original size:23 final size:24
Alignment explanation
Indices: 72457301--72457349 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
72457291 AGCTAGATTT
72457301 TTCCTAAATATTATCACTAAATAA
1 TTCCTAAATATTATCACTAAATAA
*
72457325 TTCC-AAATATTGTCACTAAATAA
1 TTCCTAAATATTATCACTAAATAA
72457348 TT
1 TT
72457350 AAAAATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (24 bp):
TTCCTAAATATTATCACTAAATAA
Found at i:72457355 original size:23 final size:23
Alignment explanation
Indices: 72457306--72457355 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
72457296 GATTTTTCCT
**
72457306 AAATATTATCACTAAATAATTCC
1 AAATATTATCACTAAATAATTAA
*
72457329 AAATATTGTCACTAAATAATTAA
1 AAATATTATCACTAAATAATTAA
72457352 AAAT
1 AAAT
72457356 TTAAAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (23 bp):
AAATATTATCACTAAATAATTAA
Found at i:72459587 original size:15 final size:15
Alignment explanation
Indices: 72459567--72459599 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72459557 ATCCTCTGTC
72459567 GTTCCTTATCCAAGT
1 GTTCCTTATCCAAGT
72459582 GTTCCTTATCCAAGT
1 GTTCCTTATCCAAGT
72459597 GTT
1 GTT
72459600 ACAAACTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.42
Consensus pattern (15 bp):
GTTCCTTATCCAAGT
Found at i:72462708 original size:30 final size:30
Alignment explanation
Indices: 72462644--72462709 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
72462634 GGGCATACCG
* *
72462644 TGTGTCACACATGGCCTATACACACGCTCG
1 TGTGTCACACATGGCCTATACACACGCCCA
* *
72462674 TGTGTCACACATGGCCTATTCAGACGCCCA
1 TGTGTCACACATGGCCTATACACACGCCCA
72462704 TGTGTC
1 TGTGTC
72462710 TACTCGTGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (30 bp):
TGTGTCACACATGGCCTATACACACGCCCA
Found at i:72463565 original size:49 final size:49
Alignment explanation
Indices: 72463511--72463621 Score: 145
Period size: 49 Copynumber: 2.3 Consensus size: 49
72463501 TCCTAGACAA
72463511 GTCTTACACTGACTTTC-ATATATC-GATGCTGATGCCATGTCCCAGATAG
1 GTCTTACACTGACTTTCAAT-TATCAGATGC-GATGCCATGTCCCAGATAG
* * * *
72463560 GTCTTACACTGGCTTTCAATTATCAGTTTCGATGCCATGTCTCAGATAG
1 GTCTTACACTGACTTTCAATTATCAGATGCGATGCCATGTCCCAGATAG
*
72463609 GTCTTATACTGAC
1 GTCTTACACTGAC
72463622 ACATAACAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
49 49 0.91
50 5 0.09
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (49 bp):
GTCTTACACTGACTTTCAATTATCAGATGCGATGCCATGTCCCAGATAG
Found at i:72483546 original size:6 final size:6
Alignment explanation
Indices: 72483535--72483562 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
72483525 GCTACAATGT
72483535 AAAGGA AAAGGA AAAGGA AAAGGA AAAG
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAG
72483563 TTATGACTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:72493507 original size:27 final size:27
Alignment explanation
Indices: 72493465--72493555 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
72493455 TCTCAAATGC
* * *
72493465 TCACCACAATTTTTTTTCTTGCATGAT
1 TCACCACAAATGTTTTTCTTTCATGAT
72493492 TCACCACAAATGTTTTTCTTTCATGAT
1 TCACCACAAATGTTTTTCTTTCATGAT
* * * *
72493519 TCGCCATAAAGGCTTTTCTTTCATGAT
1 TCACCACAAATGTTTTTCTTTCATGAT
*
72493546 TCACTACAAA
1 TCACCACAAA
72493556 AGGCATTTCT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (27 bp):
TCACCACAAATGTTTTTCTTTCATGAT
Found at i:72493558 original size:28 final size:27
Alignment explanation
Indices: 72493478--72493570 Score: 100
Period size: 27 Copynumber: 3.4 Consensus size: 27
72493468 CCACAATTTT
* * *
72493478 TTTTCTTGCATGATTCAC-CACAAATGT
1 TTTTCTTTCATGATTCACACA-AAAGGC
*
72493505 TTTTCTTTCATGATTCGC-CATAAAGGC
1 TTTTCTTTCATGATTCACACA-AAAGGC
72493532 TTTTCTTTCATGATTCACTACAAAAGGC
1 TTTTCTTTCATGATTCAC-ACAAAAGGC
*
72493560 ATTTCTTTCAT
1 TTTTCTTTCAT
72493571 AACATGTTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
27 39 0.68
28 16 0.28
29 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.43
Consensus pattern (27 bp):
TTTTCTTTCATGATTCACACAAAAGGC
Found at i:72506671 original size:13 final size:13
Alignment explanation
Indices: 72506653--72506686 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
72506643 TTAATTGAGA
* *
72506653 AATTAATTTAGTT
1 AATTAAATTAATT
72506666 AATTAAATTAATT
1 AATTAAATTAATT
72506679 AATTAAAT
1 AATTAAAT
72506687 AATATTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
AATTAAATTAATT
Found at i:72510276 original size:21 final size:22
Alignment explanation
Indices: 72510250--72510292 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
72510240 TTCATTTATG
*
72510250 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
72510271 TTTCATTTCCACATACATCATA
1 TTTCATTGCCACATACATCATA
72510293 ATACGTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:72510768 original size:28 final size:28
Alignment explanation
Indices: 72510700--72510778 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
72510690 GAATCATTTG
* *
72510700 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
72510728 ATATCTCACACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
72510756 ATATTTCGTACACTGAGTGCCAT
1 ATATTTCGCACACTAAGTGCCAT
72510779 ATTTGATTGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.34
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:72515616 original size:18 final size:19
Alignment explanation
Indices: 72515589--72515636 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
72515579 CTTACTTTTG
* *
72515589 AATATGTAAAA-AAAATTA
1 AATATATAAAACAAAATAA
72515607 AATATATAAAACAAAATAA
1 AATATATAAAACAAAATAA
72515626 AACTA-ATAAAA
1 AA-TATATAAAA
72515637 TTTATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 10 0.38
19 14 0.54
20 2 0.08
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (19 bp):
AATATATAAAACAAAATAA
Found at i:72523418 original size:15 final size:14
Alignment explanation
Indices: 72523384--72523427 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
72523374 TTTGTGTTTA
*
72523384 TTATGTGTGAATTT
1 TTATGTGTTAATTT
*
72523398 ATATGTGTTAATTT
1 TTATGTGTTAATTT
*
72523412 TTCATGTATTAATTT
1 TT-ATGTGTTAATTT
72523427 T
1 T
72523428 ACTGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (14 bp):
TTATGTGTTAATTT
Found at i:72534729 original size:48 final size:47
Alignment explanation
Indices: 72534668--72534821 Score: 136
Period size: 48 Copynumber: 3.3 Consensus size: 47
72534658 CATGTCACAG
* *
72534668 GTCTTACATTAGCTTGTATATCTCGAGGTCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTT-TATATCTCGAGGCCGATGCATGTCCCAGACAT
* * * *
72534716 GTCTTACACTAGCTCT-CATCTC-ATTGCCAATGCCATGTCCCAGACAT
1 GTCTTACACTAGCTTTATATCTCGA-GGCCGATG-CATGTCCCAGACAT
* * * * *
72534763 GGTCTTACACTGGCTCTCATA-AT-GTGGCCGATACATGTCCCAGACAT
1 -GTCTTACACTAGCT-TTATATCTCGAGGCCGATGCATGTCCCAGACAT
72534810 GTCTTACACTAG
1 GTCTTACACTAG
72534822 TACACATATC
Statistics
Matches: 84, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
45 1 0.01
46 21 0.25
47 29 0.35
48 31 0.37
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (47 bp):
GTCTTACACTAGCTTTATATCTCGAGGCCGATGCATGTCCCAGACAT
Found at i:72534761 original size:47 final size:46
Alignment explanation
Indices: 72534702--72534821 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 46
72534692 GAGGTCGATG
* *
72534702 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAT-T-GCCAATGC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCA--TAATGTGGCCAAT-A
* *
72534749 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATA
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCAATA
72534796 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
72534822 TACACATATC
Statistics
Matches: 65, Mismatches: 5, Indels: 7
0.84 0.06 0.09
Matches are distributed among these distances:
46 14 0.22
47 29 0.45
48 22 0.34
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCAATA
Found at i:72535198 original size:17 final size:17
Alignment explanation
Indices: 72535176--72535208 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
72535166 CGTGTTTATT
*
72535176 TAGTCACACGGACTTAA
1 TAGTCACACAGACTTAA
72535193 TAGTCACACAGACTTA
1 TAGTCACACAGACTTA
72535209 CCTCATTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (17 bp):
TAGTCACACAGACTTAA
Found at i:72535438 original size:14 final size:14
Alignment explanation
Indices: 72535419--72535449 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
72535409 AGGCTTGTAA
72535419 AATCAAATTCATTC
1 AATCAAATTCATTC
72535433 AATCAAATTCATTC
1 AATCAAATTCATTC
72535447 AAT
1 AAT
72535450 TTCTTTGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.35
Consensus pattern (14 bp):
AATCAAATTCATTC
Found at i:72539407 original size:42 final size:42
Alignment explanation
Indices: 72539281--72539409 Score: 132
Period size: 42 Copynumber: 3.0 Consensus size: 42
72539271 CACATAGTAC
* * * **
72539281 CATACCAATGCCATATCCCAGATGTGATCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
* * * *
72539323 CATATCAATGACAGTAGCTCAGCTATGGTCTTACATGAAATCT
1 CATATCAATGCCA-TATCCCAGATATGGTCTTACATGAAATCT
* * * *
72539366 CATATCGATGCCATATCCCAGATACGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
72539408 CA
1 CA
72539410 ACTAACCCTA
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
42 36 0.52
43 33 0.48
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCT
Found at i:72543065 original size:99 final size:99
Alignment explanation
Indices: 72542929--72543184 Score: 273
Period size: 99 Copynumber: 2.6 Consensus size: 99
72542919 TCATGAAGTG
* ** * * * *
72542929 AGTTAACCCTACAATCCAAGTAAATCGATTTAACTGTATAAACTCCATCTTTTGGGAGGCTACTT
1 AGTTAACCTTACGCTCCGAGTAAACCGATTGAGCTGTATAAACTCCATCTTTTGGGAGGCTACTT
* *
72542994 CTAATATGACCATTGAGATT-ATTAGCTTTAACTA
66 CCAATATGACCATT-AAATTGATTAGCTTTAACTA
* * * *
72543028 AGTTAGTCC-TACGTTCCGAGTAAACCGGTTGAGCTGTATATACTCCATCTTTTGGGAGGCTACT
1 AGTTA-ACCTTACGCTCCGAGTAAACCGATTGAGCTGTATAAACTCCATCTTTTGGGAGGCTACT
* * * *
72543092 TCCAATATGACTATTAAATTGATTTGCTTTAATTG
65 TCCAATATGACCATTAAATTGATTAGCTTTAACTA
* * * * * *
72543127 AGTTAACCTTGCGCTCTGAGTAAACTGATTGAGTTGTATGAACTCTATCTTTTGGGAG
1 AGTTAACCTTACGCTCCGAGTAAACCGATTGAGCTGTATAAACTCCATCTTTTGGGAG
72543185 CATTTCTTCC
Statistics
Matches: 129, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
98 6 0.05
99 121 0.94
100 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (99 bp):
AGTTAACCTTACGCTCCGAGTAAACCGATTGAGCTGTATAAACTCCATCTTTTGGGAGGCTACTT
CCAATATGACCATTAAATTGATTAGCTTTAACTA
Found at i:72553261 original size:47 final size:47
Alignment explanation
Indices: 72553186--72553493 Score: 508
Period size: 47 Copynumber: 6.5 Consensus size: 47
72553176 TTCGGGACTC
* * * * * * *
72553186 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
* *
72553233 GTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
72553280 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
72553327 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
72553374 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
72553421 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
72553470 ATCACATATATACACTTTCACATT
1 ATCACATATATACACTTTCACATT
72553494 TATTCAAATA
Statistics
Matches: 246, Mismatches: 13, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
47 199 0.81
49 47 0.19
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:72558973 original size:47 final size:47
Alignment explanation
Indices: 72558918--72559069 Score: 270
Period size: 47 Copynumber: 3.2 Consensus size: 47
72558908 TAGTATTAAT
72558918 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72558965 TATGTGATAAGGTCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72559012 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
72559059 -ATTGTGATAAG
1 TA-TGTGATAAG
72559070 TCCCGAAGGG
Statistics
Matches: 101, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.01
47 100 0.99
ACGTcount: A:0.33, C:0.07, G:0.31, T:0.29
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:72560879 original size:40 final size:40
Alignment explanation
Indices: 72560819--72561094 Score: 444
Period size: 40 Copynumber: 6.9 Consensus size: 40
72560809 CTCGATGATG
*
72560819 ATCCAGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
72560859 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
72560899 ATCCGGGTAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72560939 ATCCGGGCAAAATCCCGAGGGGCATTCGTGTCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72560979 ATCCAGGAAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * * *
72561019 ATCCGGGCTAAATCCCAAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72561059 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
72561095 ATGTGTATTC
Statistics
Matches: 217, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.24
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:72565306 original size:47 final size:47
Alignment explanation
Indices: 72565251--72565402 Score: 279
Period size: 47 Copynumber: 3.2 Consensus size: 47
72565241 TAGTATTAAT
72565251 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
72565298 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72565345 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
72565392 -ATTGTGATAAG
1 TA-TGTGATAAG
72565403 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
46 1 0.01
47 102 0.99
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:72567203 original size:40 final size:40
Alignment explanation
Indices: 72567148--72567423 Score: 462
Period size: 40 Copynumber: 6.9 Consensus size: 40
72567138 CTCGACGATG
72567148 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
72567188 ATCCGGGCAAAATCCCGAAAGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
72567228 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72567268 ATCTGGGCAAAATCCCGAGGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
72567308 ATCCAGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * * *
72567348 ATCCGGGCTAAATCCCAAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72567388 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
72567424 ATGTGTATTC
Statistics
Matches: 220, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:72571657 original size:47 final size:47
Alignment explanation
Indices: 72571588--72571739 Score: 286
Period size: 47 Copynumber: 3.2 Consensus size: 47
72571578 TAGTATTAAT
72571588 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
72571635 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72571682 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72571729 AATGTGATAAG
1 TATGTGATAAG
72571740 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:72573834 original size:40 final size:40
Alignment explanation
Indices: 72573779--72573974 Score: 311
Period size: 40 Copynumber: 4.9 Consensus size: 40
72573769 CTCGACGATG
*
72573779 ATCCGGGCAAAATCCCAAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
72573819 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
72573859 ATCTGGGCAAAATCCCGAGGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * *
72573899 ATCCGGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
** *
72573939 ATCCGGGTTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
72573975 ATGTGTATTC
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:72578193 original size:47 final size:47
Alignment explanation
Indices: 72578139--72578290 Score: 259
Period size: 47 Copynumber: 3.2 Consensus size: 47
72578129 TAGTATTAAT
*
72578139 TATGTGATAAGGCCGAATTGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
72578186 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
* * *
72578233 TATGTGACAAGGCCGAATGGCTAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
72578280 AATGTGATAAG
1 TATGTGATAAG
72578291 TCCCGAAGGG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:72583998 original size:15 final size:15
Alignment explanation
Indices: 72583978--72584016 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
72583968 CTTCATGATT
72583978 AATTTAATTTATTTA
1 AATTTAATTTATTTA
* *
72583993 AATTTAAATTATTTT
1 AATTTAATTTATTTA
*
72584008 ATTTTAATT
1 AATTTAATT
72584017 AAATAATTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTTAATTTATTTA
Found at i:72595871 original size:6 final size:6
Alignment explanation
Indices: 72595853--72595940 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
72595843 AAGAAATATT
* *
72595853 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
72595902 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
72595941 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72595900 original size:31 final size:31
Alignment explanation
Indices: 72595862--72595940 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
72595852 TATCAGAACT
* *
72595862 AGAATCAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
72595893 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
72595924 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
72595941 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:72595930 original size:25 final size:24
Alignment explanation
Indices: 72595867--72595913 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
72595857 GAACTAGAAT
*
72595867 CAGAATTAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCA-GTGA
72595892 CAGAATCAGAATCAGAATCAGT
1 CAGAATCAGAATCAGAATCAGT
72595914 ATCAGGTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (24 bp):
CAGAATCAGAATCAGAATCAGTGA
Found at i:72596095 original size:27 final size:26
Alignment explanation
Indices: 72596058--72596143 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
72596048 AGCATGGCTG
* *
72596058 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
72596084 CCAGATACAGATATTTTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
72596111 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
72596138 CCAGAA
1 CCAGAA
72596144 TTAGATAATG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.77
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:72596150 original size:54 final size:53
Alignment explanation
Indices: 72596058--72596165 Score: 119
Period size: 54 Copynumber: 2.0 Consensus size: 53
72596048 AGCATGGCTG
* * * * *
72596058 CCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTTTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
* * *
72596111 CCAGAACAGATATTTGTGGCATAGCCACCAGA-ATTAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGATA-CAGATAATGTGGCAAAGCCA
72596165 C
1 C
72596166 TTAATAGAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
Found at i:72596155 original size:27 final size:27
Alignment explanation
Indices: 72596058--72596165 Score: 96
Period size: 27 Copynumber: 4.0 Consensus size: 27
72596048 AGCATGGCTG
** * *
72596058 CCAGAACAGATAT-TGTGATAGAGTCA
1 CCAGAACAGATATATGTGGCAAAGCCA
* *
72596084 CCAGATACAGATAT-TTTGGCAGAGCCA
1 CCAGA-ACAGATATATGTGGCAAAGCCA
* *
72596111 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAAAGCCA
*
72596138 CCAGAATTAGATA-ATGTGGCAAAGCCA
1 CCAGAA-CAGATATATGTGGCAAAGCCA
72596165 C
1 C
72596166 TTAATAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 52 0.74
28 5 0.07
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (27 bp):
CCAGAACAGATATATGTGGCAAAGCCA
Found at i:72596814 original size:27 final size:27
Alignment explanation
Indices: 72596754--72596816 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
72596744 TGAGGGTACC
72596754 TCGGTAATTCTACCCTACAGGAGTATT
1 TCGGTAATTCTACCCTACAGGAGTATT
* * *
72596781 TCAGTAATTCTACCCTATAGG-GTTGTT
1 TCGGTAATTCTACCCTACAGGAG-TATT
72596808 TCGGTAATT
1 TCGGTAATT
72596817 TTGTAAATCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGAGTATT
Found at i:72596868 original size:27 final size:27
Alignment explanation
Indices: 72596838--72597086 Score: 252
Period size: 27 Copynumber: 9.3 Consensus size: 27
72596828 GGGTAGAACG
*
72596838 GTAATTTTATAAATCAGGGGTACTTT-A
1 GTAATTTTACAAATCAGGGGTA-TTTCA
* * ** *
72596865 GTAATTTTACAAGTTAAAGGTATTTTA
1 GTAATTTTACAAATCAGGGGTATTTCA
72596892 GTAATTTTACAAATC-GGGGTATTTCA
1 GTAATTTTACAAATCAGGGGTATTTCA
* ** *
72596918 GTAATTTTGCAAATCAAAGGTATTTCG
1 GTAATTTTACAAATCAGGGGTATTTCA
*
72596945 GTAATTTTGCAAATCAGGGGTATTTCA
1 GTAATTTTACAAATCAGGGGTATTTCA
**
72596972 GTAATTTTACAAATCAGGGGTATTTTG
1 GTAATTTTACAAATCAGGGGTATTTCA
* **
72596999 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAATCAGGGGTATTTCA
* *
72597026 GTAATTTTACAAACCAAGGGTATTTCA
1 GTAATTTTACAAATCAGGGGTATTTCA
* * * **
72597053 ATAATTTTGCTAATC-GAGGGTATTTTG
1 GTAATTTTACAAATCAG-GGGTATTTCA
72597080 GTAATTT
1 GTAATTT
72597087 AGTAAACTAA
Statistics
Matches: 187, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 25 0.13
27 162 0.87
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCAGGGGTATTTCA
Found at i:72596896 original size:54 final size:54
Alignment explanation
Indices: 72596837--72597050 Score: 279
Period size: 54 Copynumber: 4.0 Consensus size: 54
72596827 AGGGTAGAAC
* * *
72596837 GGTAATTTTATAAATCAGGGGTACTTT-AGTAATTTTACAAGTTAAAGGTATTTT
1 GGTAATTTTACAAATCAGGGGTA-TTTCAGTAATTTTACAAATCAAAGGTATTTT
* * *
72596891 AGTAATTTTACAAATC-GGGGTATTTCAGTAATTTTGCAAATCAAAGGTATTTC
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCAAAGGTATTTT
* **
72596944 GGTAATTTTGCAAATCAGGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCAAAGGTATTTT
* ** * *
72596998 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCAAAGGTATTT
72597051 CAATAATTTT
Statistics
Matches: 140, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
52 3 0.02
53 43 0.31
54 94 0.67
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAATTTTACAAATCAGGGGTATTTCAGTAATTTTACAAATCAAAGGTATTTT
Found at i:72597031 original size:81 final size:80
Alignment explanation
Indices: 72596837--72597086 Score: 302
Period size: 81 Copynumber: 3.1 Consensus size: 80
72596827 AGGGTAGAAC
* * * * * * *
72596837 GGTAATTTTATAAATCAGGGGTACTTTAGTAATTTTACAAGTTAAAGGTATTTTAGTAATTTTAC
1 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTAC
*
72596902 AAATCGGGGTATTTC
66 AAATCGGGGTATTTT
* * ** * * *
72596917 AGTAATTTTGCAAATCAAAGGTATTTCGGTAATTTTGCAAATCAGGGGTATTTCAGTAATTTTAC
1 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTAC
72596982 AAATCAGGGGTATTTT
66 AAATC-GGGGTATTTT
* * * *
72596998 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTGC
1 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTAC
*
72597063 TAATCGAGGGTATTTT
66 AAATCG-GGGTATTTT
72597079 GGTAATTT
1 GGTAATTT
72597087 AGTAAACTAA
Statistics
Matches: 141, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 57 0.40
81 84 0.60
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTAC
AAATCGGGGTATTTT
Found at i:72598456 original size:13 final size:13
Alignment explanation
Indices: 72598435--72598466 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
72598425 CTCGAATCTA
*
72598435 ACGTGTCACATTG
1 ACGTATCACATTG
72598448 ACGTATCACATTG
1 ACGTATCACATTG
72598461 ACGTAT
1 ACGTAT
72598467 TTTTCGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (13 bp):
ACGTATCACATTG
Found at i:72599065 original size:6 final size:6
Alignment explanation
Indices: 72599047--72599140 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
72599037 AAGAAATATT
* * *
72599047 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAG- GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
72599096 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA AT
72599141 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.06
6 57 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:72599103 original size:31 final size:31
Alignment explanation
Indices: 72599056--72599140 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
72599046 TATCAGAACT
* * *
72599056 AGAATCAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
72599087 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
72599118 AGAATCAAAATCAAAATCAGAAT
1 AGAATCAAAATCAGAATCAGAAT
72599141 GTGAATGCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:72599295 original size:27 final size:26
Alignment explanation
Indices: 72599258--72599365 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
72599248 AGCATGGCTG
* *
72599258 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
72599284 CCAGATACAGATATTTTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
72599311 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
72599338 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
72599365 C
1 C
72599366 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 12 0.17
27 53 0.75
28 6 0.08
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:72599349 original size:54 final size:53
Alignment explanation
Indices: 72599258--72599365 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
72599248 AGCATGGCTG
* * * * *
72599258 CCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTTTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
* *
72599311 CCAGAACAGATATTTGTGGCATAGCCACCAGA-ATCAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGATA-CAGATAATGTGGCAAAGCCA
72599365 C
1 C
72599366 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 13 0.28
54 33 0.72
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGGCAAAGCCA
Found at i:72599996 original size:27 final size:27
Alignment explanation
Indices: 72599929--72600016 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
72599919 GAGGCAAAAT
* * * *
72599929 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72599956 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
72599983 AGTAATTCTACCCTATAGGGTTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
72600010 GGTAATT
1 GGTAATT
72600017 TTGTAAATCG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:72600067 original size:27 final size:27
Alignment explanation
Indices: 72600010--72600286 Score: 187
Period size: 27 Copynumber: 10.3 Consensus size: 27
72600000 GGGTTGTTTC
* * ****
72600010 GGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGCAAATCGGGGGTATTTT
* *
72600037 GGTAATTTTGTAAATCGGGGGTACTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
* * * **
72600064 GGTAATTTTACAAGTTGAAGGTATTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
* * * *
72600091 AGTAATTTTACAAATC-AGGGTATTTC
1 GGTAATTTTGCAAATCGGGGGTATTTT
* ** * *
72600117 AGTAATTTTGCAAATCGGATGAATTTC
1 GGTAATTTTGCAAATCGGGGGTATTTT
72600144 GGTAATTTTGCAAATCGGGGGTATTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
* * *
72600171 AGTAATTTTACAAATCAGGGGTATTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
** * *** *
72600198 GGTAATTTTAAAAACCAAAGGTATTTC
1 GGTAATTTTGCAAATCGGGGGTATTTT
** * * **
72600225 AATAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
* *
72600252 GGTAATTTTGCTAATCGAGGGTATTTT
1 GGTAATTTTGCAAATCGGGGGTATTTT
72600279 GGTAATTT
1 GGTAATTT
72600287 AGTAAACTAA
Statistics
Matches: 202, Mismatches: 47, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
26 23 0.11
27 179 0.89
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAATTTTGCAAATCGGGGGTATTTT
Found at i:72600096 original size:54 final size:53
Alignment explanation
Indices: 72600038--72600186 Score: 156
Period size: 53 Copynumber: 2.8 Consensus size: 53
72600028 GGGTAAAACG
* * * * * *
72600038 GTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAAGGTATTTTA
1 GTAATTTTGCAAATCGGGGGTA-TTTAGTAATTTTACAAATCGAAGGAATTTCA
* * * * * *
72600092 GTAATTTTACAAATC-AGGGTATTTCAGTAATTTTGCAAATCGGATGAATTTCG
1 GTAATTTTGCAAATCGGGGGTATTT-AGTAATTTTACAAATCGAAGGAATTTCA
72600145 GTAATTTTGCAAATCGGGGGTATTTTAGTAATTTTACAAATC
1 GTAATTTTGCAAATCGGGGGTA-TTTAGTAATTTTACAAATC
72600187 AGGGGTATTT
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
52 3 0.04
53 38 0.49
54 33 0.43
55 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
GTAATTTTGCAAATCGGGGGTATTTAGTAATTTTACAAATCGAAGGAATTTCA
Found at i:72600148 original size:80 final size:81
Alignment explanation
Indices: 72600038--72600206 Score: 216
Period size: 80 Copynumber: 2.1 Consensus size: 81
72600028 GGGTAAAACG
* * * * *
72600038 GTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAAGGTATTTTAGTAATTTTACA
1 GTAATTTTGCAAATCGGAGGTAATTTGGTAATTTTACAAATCGAAGGTATTTTAGTAATTTTACA
72600103 AATCA-GGGTATTTCA
66 AATCAGGGGTATTTCA
* * **
72600118 GTAATTTTGCAAATCGGATG-AATTTCGGTAATTTTGCAAATCGGGGGTATTTTAGTAATTTTAC
1 GTAATTTTGCAAATCGGAGGTAATTT-GGTAATTTTACAAATCGAAGGTATTTTAGTAATTTTAC
**
72600182 AAATCAGGGGTATTTTG
65 AAATCAGGGGTATTTCA
72600199 GTAATTTT
1 GTAATTTT
72600207 AAAAACCAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
79 4 0.05
80 56 0.74
81 16 0.21
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (81 bp):
GTAATTTTGCAAATCGGAGGTAATTTGGTAATTTTACAAATCGAAGGTATTTTAGTAATTTTACA
AATCAGGGGTATTTCA
Found at i:72600176 original size:134 final size:135
Alignment explanation
Indices: 72600006--72600268 Score: 321
Period size: 134 Copynumber: 2.0 Consensus size: 135
72599996 TATAGGGTTG
* * ** *
72600006 TTTCGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGGGGGTACTTTGGTAATT
1 TTTCGGTAATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCAGGGGTACTTTGGTAATT
* **** * * *
72600071 TTACAAGTTGAAGGTATTTTAGTAATTTTACAAATC-AGGGTATTTCAGTAATTTTGCAAATCGG
66 TTAAAAACCAAAGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAGTAATTTTGCAAATCGG
72600135 ATGAA
131 ATGAA
* **** *
72600140 TTTCGGTAATTTTGCAAATCGGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATT
1 TTTCGGTAATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCAGGGGTACTTTGGTAATT
** *
72600205 TTAAAAACCAAAGGTATTTCAATAATTTTACAAACCAAGGGTATTTTGGTAATTTTGCTAATCG
66 TTAAAAACCAAAGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAGTAATTTTGCAAATCG
72600269 AGGGTATTTT
Statistics
Matches: 106, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
134 82 0.77
135 24 0.23
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (135 bp):
TTTCGGTAATTTTGCAAATCGAGGGTAAAACAGTAATTTTACAAATCAGGGGTACTTTGGTAATT
TTAAAAACCAAAGGTATTTCAATAATTTTACAAACCAAGGGTATTTCAGTAATTTTGCAAATCGG
ATGAA
Found at i:72600202 original size:54 final size:54
Alignment explanation
Indices: 72600037--72600286 Score: 227
Period size: 54 Copynumber: 4.6 Consensus size: 54
72600027 AGGGTAAAAC
* * * * * * *
72600037 GGTAATTTTGTAAATCGGGGGTACTTTGGTAATTTTACAAGT-TGAAGGTATTTT
1 GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTTTACAAATCAG-GGGTATTTT
* * * * * * *
72600091 AGTAATTTTACAAATC-AGGGTATTTCAGTAATTTTGCAAATC-GGATGAATTTC
1 GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTTTACAAATCAGG-GGTATTTT
*
72600144 GGTAATTTTGCAAATCGGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTT
1 GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTT
** * * * * * * *
72600198 GGTAATTTTAAAAACCAAAGGTATTTCAATAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTT
* *
72600252 GGTAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTT
72600287 AGTAAACTAA
Statistics
Matches: 152, Mismatches: 40, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
53 39 0.26
54 111 0.73
55 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTAATTTTGCAAATCGAGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTT
Found at i:72600233 original size:81 final size:81
Alignment explanation
Indices: 72600083--72600286 Score: 223
Period size: 81 Copynumber: 2.5 Consensus size: 81
72600073 ACAAGTTGAA
** ** * ** * **
72600083 GGTATTTTAGTAATTTTACAAATCA-GGGTATTTCAGTAATTTTGCAAATCGGATGAATTTCGGT
1 GGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACCAAAGGAATTTCAAT
* * **
72600147 AATTTTGCAAATCGGG
66 AATTTTACAAACCAAG
*
72600163 GGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACCAAAGGTATTTCAAT
1 GGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACCAAAGGAATTTCAAT
72600228 AATTTTACAAACCAAG
66 AATTTTACAAACCAAG
* * *
72600244 GGTATTTTGGTAATTTTGCTAATC-GAGGGTATTTTGGTAATTT
1 GGTATTTTAGTAATTTTACAAATCAG-GGGTATTTTGGTAATTT
72600287 AGTAAACTAA
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
80 26 0.25
81 78 0.75
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
GGTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTAAAAACCAAAGGAATTTCAAT
AATTTTACAAACCAAG
Found at i:72604564 original size:12 final size:12
Alignment explanation
Indices: 72604530--72604602 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
72604520 AAAAGAAGTC
72604530 TAAAAATATAACAA
1 TAAAAATA-AA-AA
*
72604544 TAAACATAAAAA
1 TAAAAATAAAAA
* *
72604556 TAGAAATAAAAC
1 TAAAAATAAAAA
72604568 TAAAAATAATAAA
1 TAAAAATAA-AAA
* * *
72604581 TTAAATTAAAAT
1 TAAAAATAAAAA
*
72604593 TAAAATTAAA
1 TAAAAATAAA
72604603 TGATAAATGG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
12 30 0.62
13 11 0.23
14 7 0.15
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (12 bp):
TAAAAATAAAAA
Done.