Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 215 of 362
Found at i:72606773 original size:37 final size:37
Alignment explanation
Indices: 72606720--72606822 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
72606710 CGAATAGTCC
*
72606720 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
72606757 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
72606794 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
72606823 ATATATTTCC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:72607023 original size:48 final size:48
Alignment explanation
Indices: 72606971--72607259 Score: 488
Period size: 48 Copynumber: 5.9 Consensus size: 48
72606961 ACATCTCCTG
72606971 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
72607019 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
*
72607067 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
*
72607115 CATATTTCACACTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
1 CATA--T-----TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
72607170 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
*
72607218 CATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
72607260 ATTTATCTTG
Statistics
Matches: 231, Mismatches: 3, Indels: 14
0.93 0.01 0.06
Matches are distributed among these distances:
48 182 0.79
50 1 0.00
53 1 0.00
55 47 0.20
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
Found at i:72607144 original size:151 final size:151
Alignment explanation
Indices: 72606976--72607259 Score: 550
Period size: 151 Copynumber: 1.9 Consensus size: 151
72606966 TCCTGCATAT
72606976 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
1 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
72607041 GCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
72607106 TATCTCATTCATATTTCACAC
131 TATCTCATTCATATTTCACAC
*
72607127 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCG
1 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
*
72607192 GCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
72607257 TAT
131 TAT
72607260 ATTTATCTTG
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
151 131 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (151 bp):
TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
GCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
TATCTCATTCATATTTCACAC
Found at i:72607187 original size:103 final size:102
Alignment explanation
Indices: 72606971--72607259 Score: 467
Period size: 103 Copynumber: 2.9 Consensus size: 102
72606961 ACATCTCCTG
72606971 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATA--T----TTCACA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACA
72607030 CTAGCCATTCGGCTTTACCACATATACATATCTCATA
66 CTAGCCATTCGGCTTTACCACATATACATATCTCATA
*
72607067 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTTCAC
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA-TTCAC
*
72607132 ACTAGCCATTCGGCTTTACCACATATACATATCTCATT
65 ACTAGCCATTCGGCTTTACCACATATACATATCTCATA
72607170 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA-T----
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACA
72607230 -TAGCCATTCGGCTTTACCACATATACATAT
66 CTAGCCATTCGGCTTTACCACATATACATAT
72607260 ATTTATCTTG
Statistics
Matches: 183, Mismatches: 3, Indels: 14
0.92 0.01 0.07
Matches are distributed among these distances:
96 81 0.44
98 1 0.01
101 1 0.01
103 100 0.55
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (102 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACA
CTAGCCATTCGGCTTTACCACATATACATATCTCATA
Found at i:72609887 original size:21 final size:18
Alignment explanation
Indices: 72609836--72609896 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
72609826 TCAACAAATC
*
72609836 AATAAAGCAAT-AATAAT
1 AATAAAACAATAAATAAT
*
72609853 AGT-AAACAATAAATCAAT
1 AATAAAACAATAAAT-AAT
72609871 AATAAAACTAATAAAATAA-
1 AATAAAAC-AAT-AAATAAT
72609890 AATAAAA
1 AATAAAA
72609897 AGTGAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
16 6 0.17
17 5 0.14
18 5 0.14
19 11 0.31
20 5 0.14
21 4 0.11
ACGTcount: A:0.69, C:0.07, G:0.03, T:0.21
Consensus pattern (18 bp):
AATAAAACAATAAATAAT
Found at i:72610904 original size:145 final size:145
Alignment explanation
Indices: 72610650--72610920 Score: 366
Period size: 145 Copynumber: 1.9 Consensus size: 145
72610640 TTTCACACGG
* * * * *
72610650 CCGTGTCGCACGGCCGTTTCCAAGCTCGTTTGTTTCTCTCATGCCCATGTAGCCTACCACACGCC
1 CCGTGTCGCACGGCCGTGTCCAAGCTCCTTTGCTTCTCCCATGCCCATGTAGCATACCACACGCC
* *
72610715 CGTGTACAATTAATAAAATAAGCCCAATTTTCACACGGCCTTGGACAC-ATCCGTGTGTCCAGGC
66 CGTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACGCT-CGTGTGTCCAGGC
72610779 CATCTGGTTCACTCAC
130 CATCTGGTTCACTCAC
* * * * *
72610795 CCGTGTCGCACGGTCGTGTGCAATCTCCTTTGCTTCTCCCATGCCCGTGT-GACATACCACATGC
1 CCGTGTCGCACGGCCGTGTCCAAGCTCCTTTGCTTCTCCCATGCCCATGTAG-CATACCACACGC
** * *
72610859 TTGTGTGCAATTAATAAAATAATCCCAATTTTCACACAGCCTTGGACACGCTCGTGTGTCCA
65 CCGTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACGCTCGTGTGTCCA
72610921 AGTCGTGTGG
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
144 1 0.01
145 106 0.98
146 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (145 bp):
CCGTGTCGCACGGCCGTGTCCAAGCTCCTTTGCTTCTCCCATGCCCATGTAGCATACCACACGCC
CGTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACGCTCGTGTGTCCAGGCC
ATCTGGTTCACTCAC
Found at i:72610967 original size:145 final size:145
Alignment explanation
Indices: 72610716--72610992 Score: 344
Period size: 145 Copynumber: 1.9 Consensus size: 145
72610706 CCACACGCCC
* *
72610716 GTGTACAATTAATAAAATAAGCCCAATTTTCACACGGCCTTGGACACATCCGTGTGTCCAGGCCA
1 GTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACATCCGTGTGTCCAAGCCA
* * * *
72610781 TCTGGTTCACTCACCCGTGTCGCACGGTCGTGTGCAATCTCCTTTGCTTCTCCCATGCCCGTGTG
66 TCTGGTTCACTCACCCGTGTCGCACGGTCATCTGCAATCTCCTTCGCTTCTCCCACGCCCGTGTG
72610846 ACATACCACATGCTT
131 ACATACCACATGCTT
* * * *
72610861 GTGTGCAATTAATAAAATAATCCCAATTTTCACACAGCCTTGGACAC-GCTCGTGTGTCCAAGTC
1 GTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACATC-CGTGTGTCCAAGCC
* * * * * * * *
72610925 GTGTGGTTCACAT-AGCTGTGTCGCATGG-CTATCTGTAGTCTCCTTCGCTTCTCCCACGCCTGT
65 ATCTGGTTCAC-TCACCCGTGTCGCACGGTC-ATCTGCAATCTCCTTCGCTTCTCCCACGCCCGT
72610988 GTGAC
128 GTGAC
72610993 CGAACACATG
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
144 2 0.02
145 108 0.97
146 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (145 bp):
GTGTACAATTAATAAAATAAGCCCAATTTTCACACAGCCTTGGACACATCCGTGTGTCCAAGCCA
TCTGGTTCACTCACCCGTGTCGCACGGTCATCTGCAATCTCCTTCGCTTCTCCCACGCCCGTGTG
ACATACCACATGCTT
Found at i:72611007 original size:20 final size:20
Alignment explanation
Indices: 72610982--72611020 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
72610972 CTTCTCCCAC
*
72610982 GCCTGTGTGACCGAACACAT
1 GCCTGTGGGACCGAACACAT
72611002 GCCTGTGGGACCGAACACA
1 GCCTGTGGGACCGAACACA
72611021 CAGCCGTGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.31, G:0.28, T:0.15
Consensus pattern (20 bp):
GCCTGTGGGACCGAACACAT
Found at i:72611030 original size:22 final size:20
Alignment explanation
Indices: 72610982--72611030 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
72610972 CTTCTCCCAC
* *
72610982 GCCTGTGTGACCGAACACAT
1 GCCTGTGGGACCGAACACAA
72611002 GCCTGTGGGACCGAACACACA
1 GCCTGTGGGACCGAACACA-A
72611023 GCCGTGTG
1 GCC-TGTG
72611031 TGTTGCCCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 18 0.72
21 3 0.12
22 4 0.16
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (20 bp):
GCCTGTGGGACCGAACACAA
Found at i:72616237 original size:29 final size:29
Alignment explanation
Indices: 72616095--72616234 Score: 140
Period size: 29 Copynumber: 4.9 Consensus size: 29
72616085 ACATACATGC
* *
72616095 ATATGGCCCGCTT-GG-CCTAATCTCATTT
1 ATATGGCCCG-TTAGGCCCAAATCACATTT
* * * * *
72616123 ATATGGCCCATCAGGCCCAATTCACGTTC
1 ATATGGCCCGTTAGGCCCAAATCACATTT
* * * * *
72616152 ATATGGCCCATTAGGCCCAATTTATATTC
1 ATATGGCCCGTTAGGCCCAAATCACATTT
*
72616181 ATATGGCCCGTTAGGCCCAAATCACCTTT
1 ATATGGCCCGTTAGGCCCAAATCACATTT
72616210 ATATGGCCCGTTAGGCCCAAATCAC
1 ATATGGCCCGTTAGGCCCAAATCAC
72616235 CTTATATTCA
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
27 1 0.01
28 11 0.12
29 81 0.87
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (29 bp):
ATATGGCCCGTTAGGCCCAAATCACATTT
Found at i:72616489 original size:24 final size:23
Alignment explanation
Indices: 72616453--72616497 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
72616443 CGCAGCCGAA
* *
72616453 CTTTTGGCTTTTCGGCATTTTGAC
1 CTTTCGGCATTTCGGC-TTTTGAC
72616477 CTTTCGGCATTTCGGCTTTTG
1 CTTTCGGCATTTCGGCTTTTG
72616498 CCGATCTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.07, C:0.22, G:0.22, T:0.49
Consensus pattern (23 bp):
CTTTCGGCATTTCGGCTTTTGAC
Found at i:72620219 original size:16 final size:16
Alignment explanation
Indices: 72620198--72620235 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
72620188 GATTTAATAA
72620198 GATATGATGTGGCCAT
1 GATATGATGTGGCCAT
72620214 GATATGATGTGGCCAT
1 GATATGATGTGGCCAT
72620230 GATATG
1 GATATG
72620236 TTCTAAGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.32
Consensus pattern (16 bp):
GATATGATGTGGCCAT
Found at i:72621049 original size:47 final size:47
Alignment explanation
Indices: 72620986--72621177 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
72620976 GAAATGATAG
*
72620986 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
72621033 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
72621080 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
72621127 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
72621174 TAAG
1 TAAG
72621178 TCCCGAAGGG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:72621352 original size:37 final size:37
Alignment explanation
Indices: 72621296--72621374 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
72621286 CCGAGCTCTA
* *
72621296 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
72621333 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
72621370 AAGAC
1 AAGAC
72621375 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:72627322 original size:29 final size:28
Alignment explanation
Indices: 72627220--72627340 Score: 116
Period size: 29 Copynumber: 4.2 Consensus size: 28
72627210 TCCATCTCAT
* * * *
72627220 TTATATGGCCCATCAGACCCAATTCACA
1 TTATATGGCCCATTAGGCCCAAATCACC
* * * * **
72627248 TTCATATGGCCCATCAAGCCTAATTCATA
1 TT-ATATGGCCCATTAGGCCCAAATCACC
72627277 TTCATATGGCCCATTAGGCCCAAATCACC
1 TT-ATATGGCCCATTAGGCCCAAATCACC
*
72627306 TTTATATGGCCCGTTAGGCCCAAATCACC
1 -TTATATGGCCCATTAGGCCCAAATCACC
72627335 TTATAT
1 TTATAT
72627341 TCATGCTCAC
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
28 8 0.10
29 70 0.88
30 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (28 bp):
TTATATGGCCCATTAGGCCCAAATCACC
Found at i:72627577 original size:16 final size:16
Alignment explanation
Indices: 72627552--72627594 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
72627542 GCAGTTGAAC
* *
72627552 TTTTGGCTTTTCGGTA
1 TTTTGACTTTTCGGCA
72627568 TTTTGACTTTTCGGCA
1 TTTTGACTTTTCGGCA
*
72627584 TTTCGACTTTT
1 TTTTGACTTTT
72627595 ACCGATCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (16 bp):
TTTTGACTTTTCGGCA
Found at i:72633657 original size:81 final size:81
Alignment explanation
Indices: 72633556--72633718 Score: 317
Period size: 81 Copynumber: 2.0 Consensus size: 81
72633546 AACCAATTAA
72633556 CACAACTACTGACTGGTGGGCTAGAAAAAGGAAAGAACCCTGTGGTCAATGCTGGAGATGATAAT
1 CACAACTACTGACTGGTGGGCTAGAAAAAGGAAAGAACCCTGTGGTCAATGCTGGAGATGATAAT
72633621 GAAGATCCTCTTTACC
66 GAAGATCCTCTTTACC
72633637 CACAACTACTGACTGGTGGGCTAGAAAAAGGAAAGAACCCTGTGGTCAATGCTGGAGATGATAAT
1 CACAACTACTGACTGGTGGGCTAGAAAAAGGAAAGAACCCTGTGGTCAATGCTGGAGATGATAAT
*
72633702 GAAGATCTTCTTTACC
66 GAAGATCCTCTTTACC
72633718 C
1 C
72633719 CCTGGGTTTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (81 bp):
CACAACTACTGACTGGTGGGCTAGAAAAAGGAAAGAACCCTGTGGTCAATGCTGGAGATGATAAT
GAAGATCCTCTTTACC
Found at i:72638786 original size:16 final size:17
Alignment explanation
Indices: 72638765--72638804 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
72638755 CCTAGCCTTG
*
72638765 TCTTTCTCCTTTT-TTT
1 TCTTTCCCCTTTTCTTT
72638781 TCTTTCCCCTTTTCTTT
1 TCTTTCCCCTTTTCTTT
72638798 TCTTTCC
1 TCTTTCC
72638805 TTTCTATTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (17 bp):
TCTTTCCCCTTTTCTTT
Found at i:72638921 original size:26 final size:26
Alignment explanation
Indices: 72638861--72638925 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
72638851 GTTTTATTAT
*
72638861 AATTTTGTAATATATAATTAATTCTTA
1 AATTTTATAATATATAATTAA-TCTTA
* * *
72638888 AGTATTATAATATATATTTTAA-CTTA
1 AATTTTATAATATATA-ATTAATCTTA
72638914 AATTTTATAATA
1 AATTTTATAATA
72638926 ACATTACACC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 14 0.45
27 13 0.42
28 4 0.13
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (26 bp):
AATTTTATAATATATAATTAATCTTA
Found at i:72646523 original size:82 final size:81
Alignment explanation
Indices: 72646407--72646562 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
72646397 AAATTGTACA
* * * *
72646407 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
72646471 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72646488 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
72646553 TGCGAGTTGA
65 TGCGAATTGA
72646563 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72646530 original size:55 final size:52
Alignment explanation
Indices: 72646406--72646559 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
72646396 TAAATTGTAC
* *
72646406 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
72646459 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
72646514 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
72646560 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:72646564 original size:27 final size:27
Alignment explanation
Indices: 72646407--72646562 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
72646397 AAATTGTACA
*
72646407 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
72646434 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
72646461 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
72646488 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
72646516 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
72646543 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
72646563 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:72646573 original size:27 final size:27
Alignment explanation
Indices: 72646399--72646583 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
72646389 GCGGGATTAA
*
72646399 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
72646426 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
72646453 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
72646480 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
72646508 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
72646535 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
72646562 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
72646584 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:72646574 original size:82 final size:81
Alignment explanation
Indices: 72646399--72646583 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
72646389 GCGGGATTAA
* * * *
72646399 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
72646464 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
72646480 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
72646544 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
72646562 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
72646584 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:72654599 original size:82 final size:81
Alignment explanation
Indices: 72654483--72654638 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
72654473 AAATTGTACA
* * * *
72654483 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
72654547 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72654564 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
72654629 TGCGAGTTGA
65 TGCGAATTGA
72654639 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72654606 original size:55 final size:52
Alignment explanation
Indices: 72654482--72654635 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
72654472 TAAATTGTAC
* *
72654482 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
72654535 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
72654590 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
72654636 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:72654640 original size:27 final size:27
Alignment explanation
Indices: 72654483--72654638 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
72654473 AAATTGTACA
*
72654483 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
72654510 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
72654537 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
72654564 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
72654592 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
72654619 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
72654639 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:72654649 original size:27 final size:27
Alignment explanation
Indices: 72654475--72654659 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
72654465 GCGGGATTAA
*
72654475 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
72654502 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
72654529 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
72654556 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
72654584 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
72654611 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
72654638 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
72654660 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:72654650 original size:82 final size:81
Alignment explanation
Indices: 72654475--72654659 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
72654465 GCGGGATTAA
* * * *
72654475 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
72654540 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
72654556 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
72654620 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
72654638 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
72654660 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:72656299 original size:47 final size:47
Alignment explanation
Indices: 72656236--72656340 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
72656226 CCCTTCGGGA
* *
72656236 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
72656283 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
72656330 CTTATCACATA
1 CTTATCACATA
72656341 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:72673153 original size:19 final size:19
Alignment explanation
Indices: 72673126--72673166 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
72673116 AACAATATAT
*
72673126 AAATTTATAAAAAAATTAA
1 AAATATATAAAAAAATTAA
**
72673145 AAATATATAAAATTATTAA
1 AAATATATAAAAAAATTAA
72673164 AAA
1 AAA
72673167 GCACGTCCAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATATATAAAAAAATTAA
Found at i:72673259 original size:25 final size:24
Alignment explanation
Indices: 72673223--72673272 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
72673213 ATATCAACTG
*
72673223 TTTTATTAATTTATATATTTTAAAA
1 TTTTATTAATTTATA-ATTTCAAAA
*
72673248 TTTTA-TATATTTTTAATTTCAAAA
1 TTTTATTA-ATTTATAATTTCAAAA
72673272 T
1 T
72673273 AATAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTATTAATTTATAATTTCAAAA
Found at i:72673265 original size:16 final size:16
Alignment explanation
Indices: 72673228--72673266 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
72673218 AACTGTTTTA
72673228 TTAA-TTTATATATTT
1 TTAATTTTATATATTT
*
72673243 TAAAATTTTATATATTT
1 T-TAATTTTATATATTT
72673260 TTAATTT
1 TTAATTT
72673267 CAAAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 1 0.05
16 7 0.35
17 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTAATTTTATATATTT
Found at i:72673434 original size:22 final size:20
Alignment explanation
Indices: 72673409--72673453 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
72673399 TTATACTTTT
72673409 TATTAATTTATATATTTTTACA
1 TATTAATTT-T-TATTTTTACA
* *
72673431 TATTCATTTTTATTTTTATA
1 TATTAATTTTTATTTTTACA
72673451 TAT
1 TAT
72673454 ACTTACCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 1 0.05
22 8 0.38
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTAATTTTTATTTTTACA
Found at i:72675151 original size:16 final size:16
Alignment explanation
Indices: 72675130--72675183 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
72675120 TGAATTACTG
* *
72675130 ATTACAGCTCTATTCC
1 ATTACAACTTTATTCC
72675146 ATTACAACTTTATTCC
1 ATTACAACTTTATTCC
* * *
72675162 ACTATAACTTTATTCA
1 ATTACAACTTTATTCC
72675178 ATTACA
1 ATTACA
72675184 GCGAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.33, C:0.24, G:0.02, T:0.41
Consensus pattern (16 bp):
ATTACAACTTTATTCC
Found at i:72680752 original size:17 final size:16
Alignment explanation
Indices: 72680726--72680769 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
72680716 TTAAGTATTT
*
72680726 TTTTATTTGATATATAC
1 TTTT-TTTGATATATAA
*
72680743 TTTTTCTTGATATCTAA
1 TTTTT-TTGATATATAA
72680760 TTTTTTTGAT
1 TTTTTTTGAT
72680770 TAATTTTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.64
Consensus pattern (16 bp):
TTTTTTTGATATATAA
Found at i:72682659 original size:22 final size:22
Alignment explanation
Indices: 72682631--72682680 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
72682621 CTTTGTTTCA
*
72682631 TATTTTTACTTTGATATTTATT
1 TATTTTTACTTTGATATTAATT
*
72682653 TATTTTTATTTTGATATTAATT
1 TATTTTTACTTTGATATTAATT
72682675 T-TTTTT
1 TATTTTT
72682681 GTTTCAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (22 bp):
TATTTTTACTTTGATATTAATT
Found at i:72684667 original size:5 final size:5
Alignment explanation
Indices: 72684650--72684679 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
72684640 CATTTGCTTC
72684650 TGATA TG-TA TGATA TGATA TGATA TGATA T
1 TGATA TGATA TGATA TGATA TGATA TGATA T
72684680 AAACTGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (5 bp):
TGATA
Found at i:72692903 original size:25 final size:26
Alignment explanation
Indices: 72692875--72692934 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
72692865 TCGTTGGGCC
72692875 TGTTTGGGTTTTAAGGAAATGG-GTT
1 TGTTTGGGTTTTAAGGAAATGGTGTT
* ** * *
72692900 TGTTTAGGTTTTGTGTAATTGGTGTT
1 TGTTTGGGTTTTAAGGAAATGGTGTT
72692926 TGTTTGGGT
1 TGTTTGGGT
72692935 GTTGGGTTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 17 0.61
26 11 0.39
ACGTcount: A:0.13, C:0.00, G:0.35, T:0.52
Consensus pattern (26 bp):
TGTTTGGGTTTTAAGGAAATGGTGTT
Found at i:72696768 original size:40 final size:40
Alignment explanation
Indices: 72696678--72696862 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
72696668 TCGAATGATG
* *
72696678 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
72696717 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
72696758 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72696797 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
72696836 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
72696863 AATGAGTAGT
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:72696814 original size:79 final size:80
Alignment explanation
Indices: 72696680--72696857 Score: 211
Period size: 79 Copynumber: 2.2 Consensus size: 80
72696670 GAATGATGTC
* *
72696680 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
72696745 GCGAGTTACTAATTT
66 GCGAGTTACTAATTT
* * **
72696760 CGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
* **
72696822 GTGCGAGTTGCT-ATAAC
64 GTGCGAGTTACTAAT-TT
*
72696839 CGGGCTATGTCCCGAAGGC
1 CGGGCTAAGTCCCGAAGGC
72696858 ATTTGAATGA
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.04
79 57 0.68
80 24 0.29
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATTT
Found at i:72696884 original size:79 final size:75
Alignment explanation
Indices: 72696714--72696885 Score: 168
Period size: 79 Copynumber: 2.2 Consensus size: 75
72696704 GCTAAGTGAC
* **
72696714 TATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCA
1 TATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
* *
72696779 TTGGTGCGAGT
65 TTGATGAGAGT
* *
72696790 TACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTGCT-ATAACCGGGCTATGTCCCG
1 TA-T--ATCC-GGTTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCG
72696853 AAGGCATTTGAATGAGTAGT
59 AAGGCA-TTG-ATGAG-AGT
72696873 TATATCCGGTTAA
1 TATATCCGGTTAA
72696886 ATTTCAAAGG
Statistics
Matches: 79, Mismatches: 7, Indels: 17
0.77 0.07 0.17
Matches are distributed among these distances:
76 2 0.03
77 1 0.01
78 3 0.04
79 45 0.57
80 16 0.20
81 3 0.04
82 4 0.05
83 5 0.06
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (75 bp):
TATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCAT
TGATGAGAGT
Found at i:72701820 original size:45 final size:45
Alignment explanation
Indices: 72701760--72701847 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
72701750 AAACATATGT
*
72701760 CACATACATCATGAACTCAGACCAGAACTCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
* * *
72701805 CACATATATCTTGAACTCAGACCACAACTCAATGGGTTCAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
72701848 TACATAGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:72715772 original size:34 final size:34
Alignment explanation
Indices: 72715727--72715817 Score: 121
Period size: 34 Copynumber: 2.6 Consensus size: 34
72715717 TTGCTTGCAT
*
72715727 ACTATT-CTAAAATGGGCTAAGGCCTAGACTGTC
1 ACTATTACTAAAATGGGCTAAGGCCTAAACTGTC
*
72715760 ACTATTACTAAAATGGGCTAAGGCCTAAACTGTT
1 ACTATTACTAAAATGGGCTAAGGCCTAAACTGTC
* *
72715794 ACTGTTACTGAAAAAGGGGCTAAG
1 ACTATTACT--AAAATGGGCTAAG
72715818 ACTCCTAACT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
33 6 0.12
34 33 0.65
36 12 0.24
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (34 bp):
ACTATTACTAAAATGGGCTAAGGCCTAAACTGTC
Found at i:72726419 original size:44 final size:44
Alignment explanation
Indices: 72726356--72726490 Score: 252
Period size: 44 Copynumber: 3.1 Consensus size: 44
72726346 ATTTTGTCAC
72726356 GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
1 GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
72726400 GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
1 GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
* *
72726444 GTAAGGTTAAACAGTTAAGTAATAAAAGCATAGCTCTCGTGAAA
1 GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
72726488 GTA
1 GTA
72726491 GTTTAGAAAC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 89 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (44 bp):
GTAAGGTTAAACAGTTGAGAAATAAAAGCATAGCTCTCGTGAAA
Found at i:72742068 original size:37 final size:37
Alignment explanation
Indices: 72742018--72742096 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
72742008 TTATTACGAA
* *
72742018 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
72742055 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
72742092 GTCTT
1 GTCTT
72742097 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:72742292 original size:47 final size:47
Alignment explanation
Indices: 72742214--72742745 Score: 901
Period size: 47 Copynumber: 11.4 Consensus size: 47
72742204 CCCTTCGGGA
* * * * * * *
72742214 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72742261 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742308 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72742355 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742402 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72742447 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72742494 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742541 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72742586 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72742680 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742727 CTTATCACATATATACACT
1 CTTATCACATATATACACT
72742746 GTCTTGGCTG
Statistics
Matches: 460, Mismatches: 21, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
45 88 0.19
47 372 0.81
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72742466 original size:139 final size:139
Alignment explanation
Indices: 72742214--72742745 Score: 911
Period size: 139 Copynumber: 3.8 Consensus size: 139
72742204 CCCTTCGGGA
* * * * * * * * * *
72742214 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATACAC
72742279 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
72742344 GGCCATTAGGC
129 GGCTATTAGGC
*
72742355 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
72742420 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
72742485 CTATTAGGC
131 CTATTAGGC
72742494 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
72742559 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
72742624 CTATTAGGC
131 CTATTAGGC
*
72742633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT--CACATATACAC
72742698 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
72742746 GTCTTGGCTG
Statistics
Matches: 375, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
139 272 0.73
141 103 0.27
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CTATTAGGC
Found at i:72742543 original size:186 final size:186
Alignment explanation
Indices: 72742214--72742745 Score: 879
Period size: 186 Copynumber: 2.8 Consensus size: 186
72742204 CCCTTCGGGA
* * * * * * * *
72742214 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACA--TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
72742279 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
72742344 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
129 GGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72742402 CTTATCACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 CTTATCACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
72742467 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
* *
72742532 CTATTAGGCCTTA-T-CACATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72742586 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
72742651 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
72742716 GGCCATTAGGCCTTATCACATATATACACT
129 GGCCATTAGGCCTTATTACATATATACACT
72742746 GTCTTGGCTG
Statistics
Matches: 322, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
184 46 0.14
185 1 0.00
186 255 0.79
188 20 0.06
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (186 bp):
CTTATCACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72759513 original size:12 final size:12
Alignment explanation
Indices: 72759496--72759520 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72759486 AATATCTTAT
72759496 TATAATAAAACA
1 TATAATAAAACA
72759508 TATAATAAAACA
1 TATAATAAAACA
72759520 T
1 T
72759521 CATGCATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TATAATAAAACA
Found at i:72760501 original size:54 final size:54
Alignment explanation
Indices: 72760420--72760525 Score: 167
Period size: 54 Copynumber: 2.0 Consensus size: 54
72760410 TGGTATTGAT
* * *
72760420 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCTG
1 ATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGATTCTG
* *
72760474 ATATTTGTGCGAGTAAGATCACATTTAATACGTTGACATCGATATGTGATTC
1 ATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGATTC
72760526 AGTTATATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (54 bp):
ATATGTGTGCGAGTAAGACCACATTTAATACGTTGACATCGATATGTGATTCTG
Found at i:72765188 original size:10 final size:11
Alignment explanation
Indices: 72765166--72765191 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72765156 TGTATATATA
72765166 TTTTAGAATTT
1 TTTTAGAATTT
72765177 TTTTAGAATTT
1 TTTTAGAATTT
72765188 TTTT
1 TTTT
72765192 CAAAGTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTAGAATTT
Found at i:72767574 original size:19 final size:20
Alignment explanation
Indices: 72767552--72767593 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
72767542 AAAACTAAGG
*
72767552 TTTTCCTTAA-AATGAACGA
1 TTTTACTTAAGAATGAACGA
*
72767571 TTTTACTTAAGAATGAATGA
1 TTTTACTTAAGAATGAACGA
72767591 TTT
1 TTT
72767594 CCAATGCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.43
Consensus pattern (20 bp):
TTTTACTTAAGAATGAACGA
Found at i:72774160 original size:47 final size:47
Alignment explanation
Indices: 72774106--72774299 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
72774096 TTAGGATTTT
** * * *
72774106 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAAAGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72774153 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
72774200 AGGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72774247 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72774294 ATGTGA
1 ATGTGA
72774300 AATATGTATG
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 128 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72774427 original size:52 final size:48
Alignment explanation
Indices: 72774269--72774455 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
72774259 TGAACATGCA
*
72774269 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72774317 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
72774365 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
72774417 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72774456 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 79 0.63
49 1 0.01
50 2 0.02
51 1 0.01
52 40 0.32
53 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72774439 original size:100 final size:96
Alignment explanation
Indices: 72774270--72774455 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
72774260 GAACATGCAT
*
72774270 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
72774335 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
72774366 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGAAATGTATATGTGGTAAA
*
72774430 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
72774456 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
98 1 0.01
99 1 0.01
100 52 0.64
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:72774651 original size:37 final size:37
Alignment explanation
Indices: 72774601--72774713 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
72774591 GGAAATATAT
*
72774601 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
72774638 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
72774675 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
72774712 TC
1 TC
72774714 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:72776321 original size:199 final size:200
Alignment explanation
Indices: 72775974--72776400 Score: 757
Period size: 199 Copynumber: 2.1 Consensus size: 200
72775964 GAGAATTGAG
*
72775974 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCG
* *
72776039 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAAATAT
*
72776104 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAG-TCCGAAGAGCATTC
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTC
72776168 GTGCT
196 GTGCT
* *
72776173 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCG
72776238 AAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAAATAT
66 AAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAAATAT
*
72776303 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC
131 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTC
72776368 GTGCT
196 GTGCT
* * *
72776373 GGTGTTATATCCGGGCTAGGTCCCGAAG
1 AGTGATATATCCGGGCTAAGTCCCGAAG
72776401 TGCAATCATG
Statistics
Matches: 216, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
199 173 0.80
200 43 0.20
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (200 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAAATAT
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCCGAAGAGCATTC
GTGCT
Found at i:72776416 original size:40 final size:40
Alignment explanation
Indices: 72775974--72776400 Score: 730
Period size: 40 Copynumber: 10.7 Consensus size: 40
72775964 GAGAATTGAG
72775974 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72776014 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72776054 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72776094 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72776134 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72776173 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72776213 AGTGATGTATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72776253 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72776293 AGTGAAATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72776333 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72776373 GGTGTTATATCCGGGCTAGGTCCCGAAG
1 AGTGATATATCCGGGCTAAGTCCCGAAG
72776401 TGCAATCATG
Statistics
Matches: 367, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
39 38 0.10
40 329 0.90
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72780420 original size:47 final size:47
Alignment explanation
Indices: 72780366--72780557 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
72780356 TTAGGATTTT
** * *
72780366 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72780413 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
72780460 AGGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
72780507 ATG-G-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72780552 ATGTGA
1 ATGTGA
72780558 AATATGTATG
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
45 38 0.29
46 2 0.02
47 89 0.69
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72780579 original size:47 final size:48
Alignment explanation
Indices: 72780527--72780714 Score: 254
Period size: 47 Copynumber: 3.8 Consensus size: 48
72780517 TGAACATGCA
72780527 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA-ATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72780574 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
72780622 CATATGCGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG----A-A-ATATGTATGAGATATG
*
72780676 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72780715 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
47 45 0.37
48 34 0.28
49 1 0.01
50 1 0.01
52 1 0.01
53 1 0.01
54 39 0.32
55 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72780591 original size:92 final size:93
Alignment explanation
Indices: 72780401--72780698 Score: 261
Period size: 92 Copynumber: 3.1 Consensus size: 93
72780391 ATGAGATAAG
* * * * *
72780401 GCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAAGGTGA
1 GCCGAATGGCCAATG-G-TGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
* * * *
72780466 TGA-ATG--TGAGCATGCATATGTGTGATAAG
64 TAATATGTATGAGAATGTATATGTG-G-TAAA
72780495 GCCGAATGGCCAATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA-A
1 GCCGAATGGCCAATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGATA
72780559 ATATGTATGAGAATGTATATGTGGTAAA
66 ATATGTATGAGAATGTATATGTGGTAAA
* * * *
72780587 GCCGAATGGCTAAT-GTGAAATATGTATGAGAT--ATGCATATGCGGTAAAGCTGAATGG-TCAA
1 GCCGAATGGCCAATGGTG-AATATG-A--ACATGCAT--ATATGTGGTAAAGCCGAATGGCT-AA
*
72780648 TGTGAAATATATATATATATGAGATATGTATATGTGGTAAA
59 TGTG----ATA-ATATGTATGAGA-ATGTATATGTGGTAAA
72780689 GCCGAATGGC
1 GCCGAATGGC
72780699 TAGTGTGAAA
Statistics
Matches: 173, Mismatches: 14, Indels: 26
0.81 0.07 0.12
Matches are distributed among these distances:
91 4 0.02
92 67 0.39
93 5 0.03
94 30 0.17
95 28 0.16
99 1 0.01
100 1 0.01
101 11 0.06
102 26 0.15
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (93 bp):
GCCGAATGGCCAATGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGATA
ATATGTATGAGAATGTATATGTGGTAAA
Found at i:72780674 original size:54 final size:54
Alignment explanation
Indices: 72780528--72780711 Score: 180
Period size: 54 Copynumber: 3.6 Consensus size: 54
72780518 GAACATGCAT
* * *
72780528 ATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATGAGA-ATGT
1 ATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATATATGAGATATGC
* *
72780575 ATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATGTATGAGATATGC
1 ATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATATATGAGATATGC
* *
72780623 ATATGCGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATATGAGATATGT
1 ATATGCGGTAAAGCCGAATGGCT-AATGTGAAATATATATATATATGAGATATGC
* *
72780677 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGCGGTAAAGCCGAATGGCTAATGTGAAATAT
72780712 GTAGGCGATG
Statistics
Matches: 120, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
47 44 0.37
48 28 0.23
52 1 0.01
53 1 0.01
54 45 0.38
55 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.30
Consensus pattern (54 bp):
ATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATATATATGAGATATGC
Found at i:72780910 original size:37 final size:36
Alignment explanation
Indices: 72780860--72781015 Score: 195
Period size: 36 Copynumber: 4.1 Consensus size: 36
72780850 GGAAATATAT
72780860 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
72780897 TCCGGGTAAGACCCGATGACTACGTGTGGAGATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTAC-------G-TGTGGAGATT-TG
*
72780942 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
* *
72780978 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
72781014 TC
1 TC
72781016 TGAGCTAAAG
Statistics
Matches: 107, Mismatches: 4, Indels: 17
0.84 0.03 0.13
Matches are distributed among these distances:
36 37 0.35
37 33 0.31
38 1 0.01
44 1 0.01
45 35 0.33
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:72780949 original size:45 final size:45
Alignment explanation
Indices: 72780884--72780974 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
72780874 GATGACTACG
72780884 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGA
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGA
*
72780929 TGTGGAGATTATGTCTGGGTAAGACCCGATGACTACGTGTGGAGA
1 TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGA
72780974 T
1 T
72780975 TTGTCCGGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.26
Consensus pattern (45 bp):
TGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTGGAGA
Found at i:72783358 original size:40 final size:40
Alignment explanation
Indices: 72782275--72783346 Score: 1829
Period size: 40 Copynumber: 26.8 Consensus size: 40
72782265 GAGAATTGAG
72782275 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782315 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782355 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782395 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782435 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782475 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782515 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782555 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72782595 AGTGATATATCTGAGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782635 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72782675 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782715 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782755 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782795 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72782835 AGTGATATATCTGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72782875 AGTGATGTATCCGGGATAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72782915 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72782955 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72782995 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
72783035 AGTGATATATCCAAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72783075 AGTGATGTATCCGAGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72783115 AGTGATTTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72783155 AGTAATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72783195 AGTAATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72783235 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTTCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
72783275 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72783315 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
72783347 ATCATGCTGG
Statistics
Matches: 985, Mismatches: 47, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 985 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72787371 original size:47 final size:47
Alignment explanation
Indices: 72787317--72787510 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
72787307 TTAGGATTTT
** * *
72787317 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
72787364 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
72787411 AGGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72787458 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72787505 ATGTGA
1 ATGTGA
72787511 AATATGTATG
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72787638 original size:98 final size:96
Alignment explanation
Indices: 72787481--72787664 Score: 271
Period size: 98 Copynumber: 1.9 Consensus size: 96
72787471 GAACATGCAT
* *
72787481 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
*
72787546 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATATGAAATATGTATGAGATATGC
* *
72787577 ATATGCGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGCGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
* *
72787641 TGAATGGCTAGTATGAAATATGTA
63 CGAATGGCTAATATGAAATATGTA
72787665 GGCGATGTGC
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.32
97 2 0.03
98 50 0.64
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (96 bp):
ATATGCGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATATGAAATATGTATGAGATATGC
Found at i:72787680 original size:50 final size:48
Alignment explanation
Indices: 72787480--72787664 Score: 264
Period size: 48 Copynumber: 3.8 Consensus size: 48
72787470 TGAACATGCA
*
72787480 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72787528 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
72787576 CATATGCGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* * *
72787626 TATATGTGGTAAAGCTGAATGGCTAGTATGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72787665 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72787885 original size:37 final size:36
Alignment explanation
Indices: 72787814--72787917 Score: 154
Period size: 37 Copynumber: 2.8 Consensus size: 36
72787804 ATATATTCCG
*
72787814 GGTAAGACCCGATGACTAGTGTGGAGATTATGTCCC
1 GGTAAGACCCGATGACTAGTGTGGAGATTTTGTCCC
*
72787850 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTA-GTGTGGAGATTTTGTCCC
* *
72787887 GGTAAGACCCGATAACTTTGTGTGGAGATTT
1 GGTAAGACCCGATGAC-TAGTGTGGAGATTT
72787918 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 18 0.29
37 43 0.69
38 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (36 bp):
GGTAAGACCCGATGACTAGTGTGGAGATTTTGTCCC
Found at i:72791076 original size:25 final size:24
Alignment explanation
Indices: 72791042--72791131 Score: 112
Period size: 24 Copynumber: 3.7 Consensus size: 24
72791032 TTTGAAAGTC
72791042 CGCACACATAGTGCTCTTAC-TTAT-T
1 CGCACACATAGTGC-C--ACGTTATCT
*
72791067 CGCACACATAGTGCCACGTTTTCT
1 CGCACACATAGTGCCACGTTATCT
* *
72791091 CGCACACATAGTGCCATGTAATCT
1 CGCACACATAGTGCCACGTTATCT
72791115 CGCACACATAGTGCCAC
1 CGCACACATAGTGCCAC
72791132 TTAGTTTTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
22 2 0.03
23 3 0.05
24 39 0.67
25 14 0.24
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (24 bp):
CGCACACATAGTGCCACGTTATCT
Found at i:72791098 original size:24 final size:24
Alignment explanation
Indices: 72791066--72791177 Score: 107
Period size: 24 Copynumber: 4.6 Consensus size: 24
72791056 TCTTACTTAT
**
72791066 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCACGTAATC
*
72791090 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTAATC
* * *
72791114 TCGCACACATAGTGCCACTTAGTTT
1 TCGCACACATAGTGCCACGTA-ATC
** * * *
72791139 TTACACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCACGTAATC
*
72791163 TTGCACACATAGTGC
1 TCGCACACATAGTGC
72791178 TGAAATTTCT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
24 54 0.75
25 18 0.25
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (24 bp):
TCGCACACATAGTGCCACGTAATC
Found at i:72791146 original size:49 final size:48
Alignment explanation
Indices: 72791066--72791177 Score: 129
Period size: 49 Copynumber: 2.3 Consensus size: 48
72791056 TCTTACTTAT
* ** *
72791066 TCGCACACATAGTGCCACGTTTTCTCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCACGTTTTCTCACACACATAGTGCCACATAACC
*
72791114 TCGCACACATAGTGCCACTTAGTTTT-T-ACACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCAC---GTTTTCTCACACACATAGTGCCACATAACC
*
72791163 TTGCACACATAGTGC
1 TCGCACACATAGTGC
72791178 TGAAATTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
48 18 0.33
49 31 0.56
50 1 0.02
51 5 0.09
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (48 bp):
TCGCACACATAGTGCCACGTTTTCTCACACACATAGTGCCACATAACC
Found at i:72792215 original size:20 final size:21
Alignment explanation
Indices: 72792190--72792228 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
72792180 TAATTTCTTC
*
72792190 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
72792210 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
72792229 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:72794795 original size:36 final size:36
Alignment explanation
Indices: 72794755--72794826 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 36
72794745 ATGCAGGGAA
*
72794755 TGATGGGGCA-TGATATGGTGTTTGTGTAAAATAAAC
1 TGATGGGG-AGTGATATGGTGGTTGTGTAAAATAAAC
** * *
72794791 TGATGTTGAGTGTTGTGGTGGTTGTGTAAAATAAAC
1 TGATGGGGAGTGATATGGTGGTTGTGTAAAATAAAC
72794827 CAAAACTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.28, C:0.04, G:0.32, T:0.36
Consensus pattern (36 bp):
TGATGGGGAGTGATATGGTGGTTGTGTAAAATAAAC
Found at i:72794864 original size:2 final size:2
Alignment explanation
Indices: 72794857--72794900 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
72794847 TGAAGAATGA
*
72794857 GT GT GT GT GT GT GT GT GT GT AT GT GT GT GT GT GT GT GT GCT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G-T GT
72794900 G
1 G
72794901 ATGGTTGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.02, C:0.02, G:0.48, T:0.48
Consensus pattern (2 bp):
GT
Found at i:72796435 original size:28 final size:28
Alignment explanation
Indices: 72796397--72796455 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
72796387 AATTAACTAT
72796397 TTAAAGTTAAATAATTTAATAAATTTAC
1 TTAAAGTTAAATAATTTAATAAATTTAC
72796425 TTAAAGTTAAATAATTTAATAAATTTAC
1 TTAAAGTTAAATAATTTAATAAATTTAC
72796453 TTA
1 TTA
72796456 CCATTTGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (28 bp):
TTAAAGTTAAATAATTTAATAAATTTAC
Found at i:72796563 original size:15 final size:15
Alignment explanation
Indices: 72796529--72796568 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
72796519 AAAATATTTT
*
72796529 AAGAATAAAATTGAA
1 AAGAATAAAATTCAA
*
72796544 GAGAATAAAATTCAA
1 AAGAATAAAATTCAA
*
72796559 AAGAAGAAAA
1 AAGAATAAAA
72796569 GAATTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.68, C:0.03, G:0.15, T:0.15
Consensus pattern (15 bp):
AAGAATAAAATTCAA
Found at i:72796603 original size:7 final size:7
Alignment explanation
Indices: 72796593--72796640 Score: 69
Period size: 7 Copynumber: 6.9 Consensus size: 7
72796583 TTGATGATTG
72796593 AAAATTA
1 AAAATTA
72796600 AAAATTA
1 AAAATTA
72796607 AAAATTA
1 AAAATTA
72796614 AAAATTA
1 AAAATTA
*
72796621 GAAATTA
1 AAAATTA
*
72796628 GAAATTA
1 AAAATTA
*
72796635 GAAATT
1 AAAATT
72796641 TAAATGTGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (7 bp):
AAAATTA
Found at i:72796660 original size:21 final size:20
Alignment explanation
Indices: 72796579--72796703 Score: 92
Period size: 21 Copynumber: 6.0 Consensus size: 20
72796569 GAATTTAAAA
*
72796579 AAAATTGATGATTGAAAATT
1 AAAATTGAAGATTGAAAATT
* * *
72796599 AAAAATTAAAAATTAAAAATT
1 -AAAATTGAAGATTGAAAATT
72796620 AGAAATTAGAA-ATT-AGAAATT
1 A-AAATT-GAAGATTGA-AAATT
*
72796641 TAAATGTGAAGATTGAAAATAT
1 AAAAT-TGAAGATTGAAAAT-T
* * *
72796663 AAAATTGAAAATTGAAGATA
1 AAAATTGAAGATTGAAAATT
*
72796683 AAAGATTGAAGATTGAGAATT
1 AAA-ATTGAAGATTGAAAATT
72796704 TAGAAAGAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 16
0.73 0.12 0.14
Matches are distributed among these distances:
20 12 0.15
21 62 0.76
22 8 0.10
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAATTGAAGATTGAAAATT
Found at i:72803203 original size:11 final size:11
Alignment explanation
Indices: 72803189--72803221 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
72803179 TCTTTAAATG
72803189 ATTACTAAAAA
1 ATTACTAAAAA
72803200 ATTAC-AAAAA
1 ATTACTAAAAA
72803210 ATTA-TAAAAA
1 ATTACTAAAAA
72803220 AT
1 AT
72803222 ATTAGGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 16 0.76
11 5 0.24
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (11 bp):
ATTACTAAAAA
Found at i:72803883 original size:19 final size:21
Alignment explanation
Indices: 72803859--72803897 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
72803849 AATATTTACA
72803859 TTAATAAAA-T-AAATTATTG
1 TTAATAAAATTGAAATTATTG
72803878 TTAATAAAATTGAAATTATT
1 TTAATAAAATTGAAATTATT
72803898 TGTTCTCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 1 0.06
21 8 0.44
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAATAAAATTGAAATTATTG
Found at i:72805932 original size:6 final size:6
Alignment explanation
Indices: 72805921--72805947 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
72805911 ATTATGTGTA
72805921 AATTAT AATTAT AATTAT AATTAT AAT
1 AATTAT AATTAT AATTAT AATTAT AAT
72805948 ATTATATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:72809984 original size:46 final size:46
Alignment explanation
Indices: 72809934--72810109 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
72809924 TGGTTGAGCA
*
72809934 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72809980 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72810025 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72810073 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72810110 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72810090 original size:93 final size:93
Alignment explanation
Indices: 72809931--72810102 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
72809921 GGATGGTTGA
* *
72809931 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72809996 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
72810024 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72810089 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72810103 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72813844 original size:47 final size:47
Alignment explanation
Indices: 72813790--72813983 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
72813780 TTAGGATTTT
** * *
72813790 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72813837 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
72813884 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
72813931 ATGTGGTGAATATGAACATGCATATATGTGATAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72813978 ATGTGA
1 ATGTGA
72813984 AATATGTATG
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72813890 original size:22 final size:22
Alignment explanation
Indices: 72813819--72813890 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72813809 GTATATATGA
72813819 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
72813841 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
72813866 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
72813888 GAT
1 GAT
72813891 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:72813939 original size:25 final size:25
Alignment explanation
Indices: 72813864--72813939 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
72813854 ATGCATATAT
72813864 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
72813889 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
72813911 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
72813936 GTGA
1 GTGA
72813940 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:72814017 original size:48 final size:48
Alignment explanation
Indices: 72813953--72814338 Score: 542
Period size: 48 Copynumber: 7.8 Consensus size: 48
72813943 TGAACATGCA
*
72813953 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72814001 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72814049 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
72814097 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
72814147 TATATGTCGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
72814195 TATATGTGGTAAAGCCGAATGGCTAATTTAAAAAAATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGT-GAAATATGTATGAGATATG
* *
72814244 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG------A-A-ATATGTATGAGATATG
*
72814300 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72814339 GGCGATGTGC
Statistics
Matches: 303, Mismatches: 20, Indels: 30
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.00
48 170 0.56
49 47 0.16
50 41 0.14
51 1 0.00
54 1 0.00
55 1 0.00
56 40 0.13
57 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72814160 original size:146 final size:147
Alignment explanation
Indices: 72813954--72814338 Score: 607
Period size: 146 Copynumber: 2.6 Consensus size: 147
72813944 GAACATGCAT
* *
72813954 ATATGTGATAAAGCCGAATGG-CTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
*
72814016 CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT-GA
65 CGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAA
*
72814080 AATATGTATGAGATATGC
130 AAAATGTATGAGATATGC
* *
72814098 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTCGTAAAGCA
1 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
*
72814163 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATTTAAAA
66 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAA
72814228 AAATGTATGAGATATGC
131 AAATGTATGAGATATGC
72814245 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATATATATGAGATATGTATATGTGGT
1 ATATGTGGTAAAGCCGAATGGTCAATGTG----A-A-ATATATATATGAGATATGTATATGTGGT
*
72814310 AAAGCCGAATGGCTAGTGTGAAATATGTA
60 AAAGCCGAATGGCTAATGTGAAATATGTA
72814339 GGCGATGTGC
Statistics
Matches: 221, Mismatches: 10, Indels: 11
0.91 0.04 0.05
Matches are distributed among these distances:
144 26 0.12
145 3 0.01
146 89 0.40
147 47 0.21
151 1 0.00
152 1 0.00
153 54 0.24
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (147 bp):
ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTAAAA
AAATGTATGAGATATGC
Found at i:72814192 original size:98 final size:97
Alignment explanation
Indices: 72813953--72814338 Score: 546
Period size: 98 Copynumber: 3.9 Consensus size: 97
72813943 TGAACATGCA
*
72813953 TATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
72814018 AATGGCTAATGTG-AAATATGTATGAGATATG
66 AATGGCTAATGTGAAAATATGTATGAGATATG
*
72814049 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
72814114 AATGG-TCAATGTGAAATATATATATGAGATATG
66 AATGGCT-AATGTGAAA-ATATGTATGAGATATG
* *
72814147 TATATGTCGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
* * *
72814212 AATGGCTAATTTAAAAAAATGTATGAGATATG
66 AATGGCTAATGTGAAAATATGTATGAGATATG
* *
72814244 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATATATGAGATATGTATATGTG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG------A-A-ATATGTATGAGATATGTATATGTG
*
72814308 GTAAAGCCGAATGGCTAGTGTG-AAATATGTA
57 GTAAAGCCGAATGGCTAATGTGAAAATATGTA
72814339 GGCGATGTGC
Statistics
Matches: 259, Mismatches: 18, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
95 1 0.00
96 75 0.29
97 41 0.16
98 89 0.34
99 1 0.00
103 1 0.00
104 9 0.03
105 42 0.16
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (97 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAAATATGTATGAGATATG
Found at i:72814592 original size:37 final size:37
Alignment explanation
Indices: 72814484--72814592 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
72814474 GGAAATATAT
*
72814484 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
72814521 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
72814558 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
72814593 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:72815876 original size:40 final size:40
Alignment explanation
Indices: 72815832--72816435 Score: 931
Period size: 40 Copynumber: 15.1 Consensus size: 40
72815822 GAGAATTGAG
* * *
72815832 AGTGATATATCCGGGCTATGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72815872 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72815912 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72815952 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72815992 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72816032 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72816072 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72816112 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72816152 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72816192 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
72816232 AGTGATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
72816272 AGTGATATATCCGGACTAAG-CCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
72816311 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
72816351 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
72816391 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
72816431 AGTGA
1 AGTGA
72816436 CGTGTATTCG
Statistics
Matches: 516, Mismatches: 47, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
39 34 0.07
40 482 0.93
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:72820580 original size:47 final size:47
Alignment explanation
Indices: 72820526--72820719 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
72820516 TTAGGATTTT
** * *
72820526 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72820573 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
72820620 ATGTGATGAATGTGAGCATGCATATTTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
72820667 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
72820714 ATGTGA
1 ATGTGA
72820720 AATATGTATG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:72820626 original size:22 final size:22
Alignment explanation
Indices: 72820555--72820626 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
72820545 GTATATATGA
72820555 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
72820577 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
72820602 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
72820624 GAT
1 GAT
72820627 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:72820748 original size:48 final size:48
Alignment explanation
Indices: 72820689--72821069 Score: 604
Period size: 48 Copynumber: 7.8 Consensus size: 48
72820679 TGAACATGCA
72820689 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
72820737 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72820785 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
72820833 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
* *
72820885 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
72820933 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
72820981 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
72821031 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
72821070 GGCGATGTGC
Statistics
Matches: 308, Mismatches: 15, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
47 2 0.01
48 214 0.69
49 5 0.02
50 43 0.14
51 2 0.01
52 41 0.13
53 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:72820910 original size:196 final size:198
Alignment explanation
Indices: 72820689--72821066 Score: 647
Period size: 196 Copynumber: 1.9 Consensus size: 198
72820679 TGAACATGCA
* * *
72820689 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTG
1 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCG
*
72820754 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAATGTG-AA
66 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAA
*
72820817 -ATATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAG
130 TATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATATGAG
72820880 ATATG
194 ATATG
72820885 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCG
1 TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCG
72820950 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAT
66 AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAT
* *
72821015 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
131 ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
72821067 GTAGGCGATG
Statistics
Matches: 171, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
196 120 0.70
197 3 0.02
198 47 0.27
199 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (198 bp):
TATATGTCGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAAT
ATATATATGAGATATGCATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGAT
ATG
Found at i:72821085 original size:148 final size:146
Alignment explanation
Indices: 72820690--72821071 Score: 671
Period size: 148 Copynumber: 2.6 Consensus size: 146
72820680 GAACATGCAT
*
72820690 ATATGTGGTAAAGCCGAATGG-CTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
* *
72820752 TGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
65 CGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
72820817 ATATGTATGAGATATGC
130 ATATGTATGAGATATGC
*
72820834 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATATGAGATATGTATATGTCGTAAAG
1 ATATGTGGTAAAGCCGAATGGTCAATGTG-AA-ATATATATATGAGATATGTATATGTGGTAAAG
72820899 CCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
64 CCGAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGA
72820964 AATATGTATGAGATATGC
129 AATATGTATGAGATATGC
72820982 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
*
72821047 GAATGGCTAGTGTGAAATATGTAGG
66 GAATGGCTAATGTGAAATATGTAGG
72821072 CGATGTGCGT
Statistics
Matches: 227, Mismatches: 6, Indels: 8
0.94 0.02 0.03
Matches are distributed among these distances:
144 27 0.12
145 1 0.00
146 58 0.26
147 3 0.01
148 138 0.61
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (146 bp):
ATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTAGGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
TATGTATGAGATATGC
Found at i:72821323 original size:37 final size:37
Alignment explanation
Indices: 72821218--72821323 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
72821208 AATATATTCT
*
72821218 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
72821255 GGGTAATACCCGATGACTACGTGTGCAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
72821292 GGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTT
72821324 CGTCTGAGCT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:72824832 original size:43 final size:43
Alignment explanation
Indices: 72824748--72824896 Score: 135
Period size: 43 Copynumber: 3.5 Consensus size: 43
72824738 TCTGAGACAT
* * * *
72824748 CGTGTAAGACCGTGTTTGGGACACAAGTC-TCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAC-AGGCATCGATAT-TGATTTA
* *
72824791 CGTATAAGACCATGTCTGGGACACCGGCATC-ATATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATAT-TGATTTA
* * * *
72824833 CGTGTAAGACCCTATCTGGGACAGAGGCATCGATATTGAGTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATATTGATTTA
* *
72824876 CATGTAAGACCACGTCTGGGA
1 CGTGTAAGACCATGTCTGGGA
72824897 TGTCAGCATT
Statistics
Matches: 85, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
42 35 0.41
43 50 0.59
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATATTGATTTA
Found at i:72824852 original size:42 final size:42
Alignment explanation
Indices: 72824785--72824896 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
72824775 TCTCGATTGA
* * *
72824785 GATTTACGTATAAGACCATGTCTGGGACACCGGCATC-ATATCT
1 GATTT-CGTGTAAGACCATATCTGGGACACAGGCATCGATAT-T
* *
72824828 GATTTCGTGTAAGACCCTATCTGGGACAGAGGCATCGATATT
1 GATTTCGTGTAAGACCATATCTGGGACACAGGCATCGATATT
* * **
72824870 GAGTTACATGTAAGACCACGTCTGGGA
1 GA-TTTCGTGTAAGACCATATCTGGGA
72824897 TGTCAGCATT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.51
43 28 0.49
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATATCTGGGACACAGGCATCGATATT
Found at i:72834874 original size:47 final size:47
Alignment explanation
Indices: 72834796--72835108 Score: 491
Period size: 47 Copynumber: 6.6 Consensus size: 47
72834786 CCCTTCGGGA
* * * * * *
72834796 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72834843 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72834890 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72834937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72834984 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72835033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72835080 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
72835109 TATTCAAATA
Statistics
Matches: 246, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 182 0.74
49 64 0.26
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72835034 original size:96 final size:96
Alignment explanation
Indices: 72834796--72835108 Score: 526
Period size: 96 Copynumber: 3.3 Consensus size: 96
72834786 CCCTTCGGGA
* * * * *
72834796 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72834859 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72834890 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72834953 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72834984 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72835049 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72835080 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
72835109 TATTCAAATA
Statistics
Matches: 204, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 91 0.45
96 112 0.55
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72851016 original size:19 final size:19
Alignment explanation
Indices: 72850992--72851031 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
72850982 GTGACGAACT
72850992 ATGTGTGCAAATTCGATTG
1 ATGTGTGCAAATTCGATTG
72851011 ATGTGTGCAAATTCGATTG
1 ATGTGTGCAAATTCGATTG
72851030 AT
1 AT
72851032 AATATAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.38
Consensus pattern (19 bp):
ATGTGTGCAAATTCGATTG
Found at i:72860879 original size:40 final size:40
Alignment explanation
Indices: 72860764--72860946 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
72860754 TCCTCGTTCA
* * * * *
72860764 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72860803 AATGCCTTCGGGACATAACCC-GATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
72860842 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72860882 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72860922 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
72860947 ATATTCACTT
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
38 13 0.10
39 42 0.33
40 72 0.57
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72860939 original size:80 final size:78
Alignment explanation
Indices: 72860762--72860946 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 78
72860752 GCTCCTCGTT
* * * * *
72860762 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGAT
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGAT
72860827 TTAACAACTCGCA
66 TTAACAACTCGCA
* ** * *
72860840 CGACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCC-G
** *
72860905 ATTTAGTATCTCGCA
64 ATTTAACAACTCGCA
*
72860920 CAAAGGCCTTC-GGATCTTAATCCGGAT
1 CAAAGGCCTTCGGGA-CTTAACCCGGAT
72860947 ATATTCACTT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 34 0.38
79 23 0.26
80 32 0.36
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (78 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGAT
TTAACAACTCGCA
Found at i:72860969 original size:80 final size:79
Alignment explanation
Indices: 72860762--72860984 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 79
72860752 GCTCCTCGTT
* * * * * * *
72860762 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCC-G
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
72860825 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* ** * *
72860840 CGACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
** *
72860905 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
* * * * *
72860920 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTC-GGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
72860983 GA
64 GA
72860985 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 33 0.28
79 36 0.30
80 45 0.38
81 5 0.04
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:72860993 original size:40 final size:41
Alignment explanation
Indices: 72860917--72860993 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
72860907 TTAGTATCTC
* * *
72860917 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
*
72860958 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACA-CATTCA
72860994 ATTAATCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
39 10 0.32
40 14 0.45
41 7 0.23
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
Found at i:72868810 original size:40 final size:40
Alignment explanation
Indices: 72868634--72868856 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
72868624 TCCTCGTTCA
* * * * *
72868634 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72868673 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
72868713 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72868753 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
72868793 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72868833 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72868857 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72872918 original size:40 final size:40
Alignment explanation
Indices: 72872839--72872918 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
72872829 AGCGAGAGAC
* * *
72872839 AGTGTAAGACCTATTAGGGACATGGCATCGGCCTCGATGT
1 AGTGTAACACCTATTAGGGACATGGCATCGACCTAGATGT
*
72872879 AGTGTAACACCTATCTA-GGACATGGCATCGACTTAGATGT
1 AGTGTAACACCTAT-TAGGGACATGGCATCGACCTAGATGT
72872919 GAGAGCCAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 33 0.94
41 2 0.06
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
AGTGTAACACCTATTAGGGACATGGCATCGACCTAGATGT
Found at i:72893571 original size:27 final size:27
Alignment explanation
Indices: 72893533--72893586 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
72893523 AAGTTTTCAA
*
72893533 AGTTAGGTGAGTTTTTGTGACTAAATT
1 AGTTAGGTGAGTTTTGGTGACTAAATT
72893560 AGTTAGGTGAGTTTTGGTGACTAAATT
1 AGTTAGGTGAGTTTTGGTGACTAAATT
72893587 GACTAGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.28, T:0.43
Consensus pattern (27 bp):
AGTTAGGTGAGTTTTGGTGACTAAATT
Found at i:72894544 original size:49 final size:48
Alignment explanation
Indices: 72894491--72894672 Score: 199
Period size: 49 Copynumber: 3.7 Consensus size: 48
72894481 TGATAGATGA
* *
72894491 AAGCTTGTGTAAGACCTGTTTAGGACATGGCATCGGCCTCAAAATATAC
1 AAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGGCCTC-AAATATAC
* * *
72894540 AAGCTAGTGTAAGACCTGTCTAGGACATGGCATTGG-CACAGATA-AGC
1 AAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGGCCTCAAATATA-C
* **
72894587 AAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGACGTATGA-
1 -A-AGCTAGTGTAAGACCTGTCTAGGACATGGCATCGGCCTC-AAATAT-AC
* *
72894638 AAGTTAGTGTAAGACCTGTCTAGGACATGACATCG
1 AAGCTAGTGTAAGACCTGTCTAGGACATGGCATCG
72894673 ACTTAGATGT
Statistics
Matches: 113, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 1 0.01
47 5 0.04
48 3 0.03
49 97 0.86
50 3 0.03
51 3 0.03
53 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
AAGCTAGTGTAAGACCTGTCTAGGACATGGCATCGGCCTCAAATATAC
Found at i:72894615 original size:98 final size:98
Alignment explanation
Indices: 72894444--72894666 Score: 272
Period size: 98 Copynumber: 2.3 Consensus size: 98
72894434 TGACGTGCGT
* ** *
72894444 GCTAGTGTAAGACCTGTCTGGGACATGGAAACAGCATTGATAGATGAAAGCTTGTGTAAGACCTG
1 GCTAGTGTAAGACCTGTCTAGGACATGGAAACAGCACAGATAGATGAAAGCTAGTGTAAGACCTG
*
72894509 TTTAGGACATGGCATCGGCCTCAAAATAT-ACAA
66 TCTAGGACATGGCATCGGCCTCAAAATATGA-AA
* ***
72894542 GCTAGTGTAAGACCTGTCTAGGACATGGCATTGGCACAGATA-A-GCAAGAGCTAGTGTAAGACC
1 GCTAGTGTAAGACCTGTCTAGGACATGGAAACAGCACAGATAGATG-AA-AGCTAGTGTAAGACC
* * **
72894605 TGTCTGGGACATGGCATCGGCCTCGACGTATGAAA
64 TGTCTAGGACATGGCATCGGCCTCAAAATATGAAA
*
72894640 GTTAGTGTAAGACCTGTCTAGGACATG
1 GCTAGTGTAAGACCTGTCTAGGACATG
72894667 ACATCGACTT
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
96 1 0.01
97 3 0.03
98 103 0.95
99 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (98 bp):
GCTAGTGTAAGACCTGTCTAGGACATGGAAACAGCACAGATAGATGAAAGCTAGTGTAAGACCTG
TCTAGGACATGGCATCGGCCTCAAAATATGAAA
Found at i:72899430 original size:21 final size:22
Alignment explanation
Indices: 72899390--72899431 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
72899380 GATACCTAGT
*
72899390 AAAAGGTATCGATACTTTTTAA
1 AAAAGGGATCGATACTTTTTAA
72899412 AAAAGGGATCGATACTTTTT
1 AAAAGGGATCGATACTTTTT
72899432 GTAATTGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (22 bp):
AAAAGGGATCGATACTTTTTAA
Found at i:72899617 original size:20 final size:20
Alignment explanation
Indices: 72899561--72899617 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
72899551 ACTTATTTTA
*
72899561 AAACTCTTTTAACTT-ATTG
1 AAACTATTTTAACTTAATTG
* *
72899580 AAA--ATGTTGAACTAAATTG
1 AAACTAT-TTTAACTTAATTG
72899599 AAACTATTTTAACTTAATT
1 AAACTATTTTAACTTAATT
72899618 TTATCATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
17 1 0.03
18 6 0.21
19 10 0.34
20 10 0.34
21 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (20 bp):
AAACTATTTTAACTTAATTG
Found at i:72901099 original size:18 final size:18
Alignment explanation
Indices: 72901074--72901117 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
72901064 AACATTACAT
72901074 TAACAGTAATCAATGCAG
1 TAACAGTAATCAATGCAG
* *
72901092 TAAGAGTAATCAGTGCAG
1 TAACAGTAATCAATGCAG
72901110 TAACAGTA
1 TAACAGTA
72901118 TACAAATCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.23
Consensus pattern (18 bp):
TAACAGTAATCAATGCAG
Found at i:72906632 original size:27 final size:27
Alignment explanation
Indices: 72906602--72906706 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
72906592 CTACTAGAAT
* *
72906602 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
* *
72906629 AGATAATCGTGGCAGAGCCACCGGA-AG
1 AGATAAT-GTGGCAGAGCCACCAGATAC
72906656 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
72906683 AGATAATTGTGGCATAGCCACCAG
1 AGATAA-TGTGGCAGAGCCACCAG
72906707 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 1 0.01
27 50 0.75
28 16 0.24
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:72906660 original size:54 final size:54
Alignment explanation
Indices: 72906602--72906704 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
72906592 CTACTAGAAT
*
72906602 AGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACCGGAAG
1 AGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCACCGGAAG
* * *
72906656 AGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACC
1 AGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACC
72906705 AGGACGCTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 26 0.59
55 18 0.41
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.17
Consensus pattern (54 bp):
AGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACCGGAAG
Found at i:72907122 original size:8 final size:8
Alignment explanation
Indices: 72907093--72907125 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
72907083 CCTCAAAATG
72907093 TCGGCTTT
1 TCGGCTTT
72907101 TCGGCATTT
1 TCGGC-TTT
72907110 T-GGCTTT
1 TCGGCTTT
72907117 TCGGCTTT
1 TCGGCTTT
72907125 T
1 T
72907126 GCCGATCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.03, C:0.21, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:72914619 original size:43 final size:43
Alignment explanation
Indices: 72914511--72914677 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
72914501 ATTACCAAGA
* * *
72914511 TGTGATTACATGTAAGACCATGCTTGAGACGTTGGCATTGAAT
1 TGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTGTAT
*
72914554 TGTGATTACATGTAAGACCATGTTTGAGACATTGACATTGTAT
1 TGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTGTAT
* * *
72914597 TGTGATTACGTGTAAGACCATGTTTTG-GACATTGGTATCGT-T
1 TGTGATTACATGTAAGACCATG-TTTGAGACATTGGCATTGTAT
* * * * *
72914639 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
1 -TGTGATTACATGTAAGACCATGTTTGAGACATTGGCAT
72914678 CGATATGAGT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 4 0.04
43 101 0.93
44 4 0.04
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTTTGAGACATTGGCATTGTAT
Done.