Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 216 of 362
Found at i:72914698 original size:43 final size:44
Alignment explanation
Indices: 72914514--72914711 Score: 158
Period size: 43 Copynumber: 4.6 Consensus size: 44
72914504 ACCAAGATGT
* * * *
72914514 GATTACATGTAAGACCATG-CTTGAGACGTTGGCATTGA-ATTGT
1 GATTACATGTAAGACCATGTC-TGGGACATTGGCATCGATATTGA
* * * * *
72914557 GATTACATGTAAGACCATGTTTGAGACATTGACATTG-TATTGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGA
* * * * *
72914600 GATTACGTGTAAGACCATGTTTTGGACATTGGTATCGTTA-T-A
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGA
* *
72914642 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TGA
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGA
* *
72914686 GTTTACACGTAAGACCA-GATCTGGGA
1 GATTACATGTAAGACCATG-TCTGGGA
72914712 TATGACATTG
Statistics
Matches: 130, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
42 1 0.01
43 126 0.97
44 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTGA
Found at i:72915671 original size:19 final size:20
Alignment explanation
Indices: 72915633--72915671 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
72915623 GGCTTATATG
*
72915633 TTGGCTAGATAGTAATTGAT
1 TTGGCTAGATAGTAAATGAT
*
72915653 TTGGCTA-ATTGTAAATGAT
1 TTGGCTAGATAGTAAATGAT
72915672 ATGTCATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGGCTAGATAGTAAATGAT
Found at i:72916552 original size:85 final size:85
Alignment explanation
Indices: 72916409--72916587 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
72916399 GGCCGGCCAT
*
72916409 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
72916474 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
72916494 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
72916559 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
72916579 GGGCATGGG
1 GAGCATGGG
72916588 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTCGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:72917929 original size:49 final size:47
Alignment explanation
Indices: 72917850--72918403 Score: 756
Period size: 47 Copynumber: 11.6 Consensus size: 47
72917840 TATTTGAATA
72917850 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
72917897 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* **
72917946 AATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
72917995 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
72918044 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
72918093 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
72918140 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCATTGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
72918189 AATGTGAACA-TGTGTATGTGTGATAAGG-CTGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATG
* * *
72918236 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
72918283 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
72918330 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
72918377 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
72918404 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 20, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.00
47 243 0.51
48 1 0.00
49 232 0.48
50 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:72917977 original size:98 final size:94
Alignment explanation
Indices: 72917850--72918403 Score: 756
Period size: 98 Copynumber: 5.8 Consensus size: 94
72917840 TATTTGAATA
*
72917850 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
72917915 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * **
72917946 AATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
*
72918011 TATATGTGATAAGGCCTAATGGCCGATGTGATG
62 TATATGTGATAAGGCCTAATGGCCAATGTGATG
** *
72918044 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
72918109 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCAATGTGATG
* *
72918140 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCATTGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
72918204 ATGTGTGATAAGG-CTGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCT-AATGGCCAATGTGATG
* * *
72918236 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
* *
72918299 TGTGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
72918330 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
72918395 TGTGATAAG
66 TGTGATAAG
72918404 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 26, Indels: 18
0.91 0.06 0.04
Matches are distributed among these distances:
93 2 0.00
94 139 0.33
95 2 0.00
96 139 0.33
97 2 0.00
98 140 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:72918328 original size:22 final size:22
Alignment explanation
Indices: 72918301--72918375 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
72918291 CATGTGTATG
72918301 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
72918323 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
72918348 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
72918370 TGTGAT
1 TGTGAT
72918376 GGATGTGGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 14 0.37
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:72922333 original size:27 final size:26
Alignment explanation
Indices: 72922293--72922404 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
72922283 AGGAAGCATA
*
72922293 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
**
72922320 CTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
72922347 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
72922375 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
72922401 CTGG
1 CTGG
72922405 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 50 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:72922397 original size:54 final size:54
Alignment explanation
Indices: 72922293--72922404 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
72922283 AGGAAGCATA
* *
72922293 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
72922347 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
72922401 CTGG
1 CTGG
72922405 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:72929555 original size:27 final size:26
Alignment explanation
Indices: 72929515--72929627 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
72929505 AGGAAGCGTC
*
72929515 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
72929542 CTGGTGGCTCTGCCACTTATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
72929569 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
72929597 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
72929623 CTGGT
1 CTGGT
72929628 AGCCATGCTG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.69
28 16 0.21
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:72929590 original size:54 final size:54
Alignment explanation
Indices: 72929515--72929627 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
72929505 AGGAAGCGTC
* *
72929515 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACTTATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
72929569 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACATTATCTGTT
72929623 CTGGT
1 CTGGT
72929628 AGCCATGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGTATCTGGTGACTCTGCCACATTATCTGTT
Found at i:72932864 original size:13 final size:13
Alignment explanation
Indices: 72932846--72932870 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72932836 CTTTCGGGCT
72932846 TATTGGACAATCA
1 TATTGGACAATCA
72932859 TATTGGACAATC
1 TATTGGACAATC
72932871 CTTTGATGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TATTGGACAATCA
Found at i:72937278 original size:50 final size:49
Alignment explanation
Indices: 72937164--72937396 Score: 178
Period size: 50 Copynumber: 4.7 Consensus size: 49
72937154 CTGGTACGCA
* * * * * *
72937164 TAGTAGCATGCATTTAGTACTACCCATGTGACCAACAATCTAGTACACG
1 TAGTAGCCTGCACTTATTACTACACACGTGACCAACAATCTAATACACG
*
72937213 TAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTATTACTACACACGTGACC-AACAATCTAATACACG
* * * * *** *** * *
72937263 TAGTATCTTGTACTTATTACTACACACGTGATCGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTATTACTACACACGTGA-CCAA-CAATCTAATACACG
* * * ** * **
72937314 TAGTAGCCAGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTATTACTACACACGTGACC-AACAATCTAATACACG
*
72937364 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTATTACTACACACGTGACC
72937397 CTAAACCATC
Statistics
Matches: 143, Mismatches: 37, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
49 28 0.20
50 83 0.58
51 32 0.22
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTATTACTACACACGTGACCAACAATCTAATACACG
Found at i:72937338 original size:101 final size:101
Alignment explanation
Indices: 72937213--72937394 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
72937203 CTAGTACACG
* * ** * * *
72937213 TAGTAGCCTGCACTTATTACTACACACGTGACCTAACCATCTAATACACGTAGTATCTTGTACTT
1 TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACGTAGTAGCCTGCACTT
*
72937278 ATTACTACACACGTGATCGAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
* * **
72937314 TAGTAGCCAGCACTTAGTACTACACATGCAACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACGTAGTAGCCTGCACTT
72937379 AGTACTACACACGTGA
66 AGTACTACACACGTGA
72937395 CCCTAAACCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (101 bp):
TAGTAGCCAGCACTTAGTACTACACACGCAACCTAACCATCTAATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTGTCGGGTACGCA
Found at i:72940280 original size:18 final size:19
Alignment explanation
Indices: 72940247--72940282 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
72940237 TTAAATTTGG
*
72940247 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
72940266 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
72940283 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:72940767 original size:64 final size:63
Alignment explanation
Indices: 72940686--72940869 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 63
72940676 AGACATTATG
* * *
72940686 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72940750 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAAGACCCCATGTAGAAAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTG---TACACCATGTAGACAAGAGAGCTACGAGAT
72940815 AA
62 AA
* * *
72940817 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGC
72940870 CAAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 16 0.17
64 27 0.28
66 22 0.23
67 30 0.31
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72944853 original size:20 final size:20
Alignment explanation
Indices: 72944828--72944867 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
72944818 TGAAATTGTG
72944828 TATAACAGGAACATTAATGA
1 TATAACAGGAACATTAATGA
72944848 TATAACAGGAACATTAATGA
1 TATAACAGGAACATTAATGA
72944868 AAAACTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (20 bp):
TATAACAGGAACATTAATGA
Found at i:72945723 original size:12 final size:12
Alignment explanation
Indices: 72945706--72945733 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
72945696 CACACACGCT
72945706 CGTGTGCTAGGC
1 CGTGTGCTAGGC
72945718 CGTGTGCTAGGC
1 CGTGTGCTAGGC
72945730 CGTG
1 CGTG
72945734 CCAAACCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:72953413 original size:39 final size:39
Alignment explanation
Indices: 72953359--72953507 Score: 289
Period size: 39 Copynumber: 3.8 Consensus size: 39
72953349 GATGTGTATT
72953359 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
72953398 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
72953437 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
*
72953476 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
1 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
72953508 ATATGTTCGG
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.27
Consensus pattern (39 bp):
CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATC
Found at i:72953544 original size:78 final size:78
Alignment explanation
Indices: 72953359--72953561 Score: 241
Period size: 78 Copynumber: 2.6 Consensus size: 78
72953349 GATGTGTATT
** * *
72953359 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTG
1 CGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTG
*
72953424 CTGGAATTATATC
66 CTGGAAATATATC
** *
72953437 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTG
1 CGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTG
* *
72953502 CTGGAAATATGTT
66 CTGGAAATATATC
* * * *
72953515 CGGGC-TAAAGTCCCGTAGGCT-TCGAGCTGGTATTATA-CCGGATTTAA
1 CGGACTTAAAGT-CCGCAGGCTAT-GAGCTGGAATTATATCCGGACTTAA
72953562 ATTCCCGCAG
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
77 14 0.12
78 98 0.88
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (78 bp):
CGGACTTAAAGTCCGCAGGCTATGAGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTATGTG
CTGGAAATATATC
Found at i:72953570 original size:117 final size:117
Alignment explanation
Indices: 72953359--72953587 Score: 259
Period size: 117 Copynumber: 2.0 Consensus size: 117
72953349 GATGTGTATT
* * ** *
72953359 CGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTG
1 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAG
**
72953424 CTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGG-AATTATATC
66 CTGGAATTATATCCGGACTTAAAGTCCGCAGG-TATGTGCTGGTAATTATATC
* * * *
72953476 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATGTTCGGGC-TAAAGTCCCGTAGGCT-TCG
1 CGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGGCTAT-G
* * * *
72953539 AGCTGGTATTATA-CCGGATTTAAATTCCCGCAGGTTTGTGCTGGTAATT
64 AGCTGGAATTATATCCGGACTTAAAGT-CCGCAGGTATGTGCTGGTAATT
72953588 GGTTTCAAGT
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
116 23 0.25
117 70 0.75
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (117 bp):
CGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGCTATGAG
CTGGAATTATATCCGGACTTAAAGTCCGCAGGTATGTGCTGGTAATTATATC
Found at i:72958809 original size:44 final size:43
Alignment explanation
Indices: 72958745--72958850 Score: 151
Period size: 44 Copynumber: 2.5 Consensus size: 43
72958735 TATATTGTAC
*
72958745 ATTGGAACTAAGTGTGCGAGACTGAGATAGCTTCGATTAAATAT
1 ATTGGCACTAAGTGTGCGAGACT-AGATAGCTTCGATTAAATAT
* * **
72958789 ATTGGCACTAAGTGTACGAGACTAGATAGCTTCGTTTATTTAT
1 ATTGGCACTAAGTGTGCGAGACTAGATAGCTTCGATTAAATAT
72958832 -TTGGCACTAAGTGTGCGAG
1 ATTGGCACTAAGTGTGCGAG
72958851 TTTTCGGGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 18 0.32
43 17 0.30
44 21 0.38
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.32
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGCGAGACTAGATAGCTTCGATTAAATAT
Found at i:72960363 original size:30 final size:30
Alignment explanation
Indices: 72960327--72960423 Score: 133
Period size: 30 Copynumber: 3.2 Consensus size: 30
72960317 TGTTTAATGC
* *
72960327 CGTGTGAGGCACACGACCTATTCACACGAG
1 CGTGTGAGGCACACGGCCTATTCACACGGG
* *
72960357 CGTGTGAGGAACATGGCCTATTCACACGGG
1 CGTGTGAGGCACACGGCCTATTCACACGGG
*
72960387 CATGTGAGGCACACGGCC-AGTTCACACGGG
1 CGTGTGAGGCACACGGCCTA-TTCACACGGG
72960417 CGTGTGA
1 CGTGTGA
72960424 CCCCTTTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 1 0.02
30 57 0.98
ACGTcount: A:0.24, C:0.27, G:0.32, T:0.18
Consensus pattern (30 bp):
CGTGTGAGGCACACGGCCTATTCACACGGG
Found at i:72964491 original size:39 final size:39
Alignment explanation
Indices: 72964448--72964529 Score: 128
Period size: 39 Copynumber: 2.1 Consensus size: 39
72964438 CCGACTATAT
*
72964448 TCCAGCACGTAGCCTGCGGACCTCAAGTCTAGATATGTG
1 TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTG
* * *
72964487 TCCAGCACGTAGCCTGCGGACCTCATGTCCGGATATGTT
1 TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTG
72964526 TCCA
1 TCCA
72964530 AATATCATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.30, G:0.24, T:0.24
Consensus pattern (39 bp):
TCCAGCACGTAGCCTGCGGACCTCAAGTCCAGATATGTG
Found at i:72965584 original size:50 final size:50
Alignment explanation
Indices: 72965488--72965593 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 50
72965478 ATTGGAACAC
* * * * *
72965488 CACATAAATACTTACCTATATGACCGGATATACCAAATTCATTATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
* * *
72965538 TACATAAGTACATACCTATAAGACCGAATATA-CAAGGCTCAATATATCAT
1 CACATAAATACATACCTATAAGACCGAATATACCAA-ACTCAATATATCAT
72965588 CACATA
1 CACATA
72965594 TGGCTAGTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
49 3 0.07
50 43 0.93
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (50 bp):
CACATAAATACATACCTATAAGACCGAATATACCAAACTCAATATATCAT
Found at i:72972321 original size:39 final size:39
Alignment explanation
Indices: 72972278--72972400 Score: 192
Period size: 39 Copynumber: 3.2 Consensus size: 39
72972268 CCCAGCTATA
*
72972278 TTCCAACACATAGCCTGCGGACCTCAAGTCCGGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
* *
72972317 TTCCAGCATGTAGCCTGCGGACCTCAAGTCCGGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
* * *
72972356 TTCCAGCACGTAGCCTGTGGACCACAAGTCCGGATATGT
1 TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
72972395 TTCCAA
1 TTCCAA
72972401 ATATCATGCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAACACGTAGCCTGCGGACCTCAAGTCCGGATATGT
Found at i:72974332 original size:24 final size:24
Alignment explanation
Indices: 72974296--72974457 Score: 87
Period size: 24 Copynumber: 6.8 Consensus size: 24
72974286 GAGCCAACAT
* *
72974296 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* * *
72974320 TGGCACTATGTGTGCGAAATCGAT
1 TGGCACTATGTGTGCGAATTTGAA
* * *
72974344 TGGCACTATGTATACTG-GTTTGAA
1 TGGCACTATGTGTGC-GAATTTGAA
* * ** * * *
72974368 TGTCAATAAATGAGTGAATTTCCAA
1 TGGCACTATGTGTGCGAATTT-GAA
* * * *
72974393 -AGCACTATGTGTACG-GTTTAGCA
1 TGGCACTATGTGTGCGAATTT-GAA
*
72974416 TGGCACTATGTGTGCGAATTTGAT
1 TGGCACTATGTGTGCGAATTTGAA
*
72974440 TAGCACTATGTGTGCGAA
1 TGGCACTATGTGTGCGAA
72974458 ATCGGTTGAG
Statistics
Matches: 94, Mismatches: 39, Indels: 10
0.66 0.27 0.07
Matches are distributed among these distances:
23 5 0.05
24 83 0.88
25 6 0.06
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:72975599 original size:24 final size:24
Alignment explanation
Indices: 72975567--72975617 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
72975557 TACTAACTAG
72975567 CTATTTAAACATCATACATATGCC
1 CTATTTAAACATCATACATATGCC
72975591 CTATTTAAACATCATACATATGCC
1 CTATTTAAACATCATACATATGCC
72975615 CTA
1 CTA
72975618 CTCATGCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.04, T:0.33
Consensus pattern (24 bp):
CTATTTAAACATCATACATATGCC
Found at i:72990093 original size:46 final size:46
Alignment explanation
Indices: 72989966--72990085 Score: 186
Period size: 46 Copynumber: 2.6 Consensus size: 46
72989956 ATTTGGGCAT
* * *
72989966 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATAGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
72990012 CCGAATTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
72990058 CCGACCTCGTTGAGTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC
72990086 GCCTATGGGT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72995981 original size:46 final size:46
Alignment explanation
Indices: 72995856--72995983 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
72995846 ATTTGGGCAT
* *
72995856 CCGAACTCGTTGAGTTGAG-TCTGAGTTCACATATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGGATGCGAACGC
* *
72995902 CCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGC
*
72995948 CCGAACTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGG
72995984 GTGGGTTACA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
46 73 0.99
47 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGC
Found at i:72997470 original size:27 final size:27
Alignment explanation
Indices: 72997408--72997519 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
72997398 AGCATGGCTG
* *
72997408 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
72997434 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
72997462 CCAGAACAGA-AATATGTGGCACAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
72997489 CCAGATCAGGTAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
72997516 CCAG
1 CCAG
72997520 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:72997508 original size:54 final size:54
Alignment explanation
Indices: 72997408--72997519 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
72997398 AGCATGGCTG
* * *
72997408 CCAGAACAGATAATGTGACAGAGTCACCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACACAGCCACCAAATACAGATAATCGTGGCAGAGCCA
* * * * *
72997462 CCAGAACAGAAATATGTGGCACAGCCACCAGAT-CAGGTAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACACAGCCACCAAATACAGATAATCGTGGCAGAGCCA
72997516 CCAG
1 CCAG
72997520 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACACAGCCACCAAATACAGATAATCGTGGCAGAGCCA
Found at i:73004204 original size:11 final size:10
Alignment explanation
Indices: 73004184--73004218 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
73004174 AGTACAGACA
73004184 AATAATTCAG
1 AATAATTCAG
73004194 AATATATTCAG
1 AATA-ATTCAG
*
73004205 AAAAATTCAG
1 AATAATTCAG
73004215 AATA
1 AATA
73004219 CTTACAGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (10 bp):
AATAATTCAG
Found at i:73005308 original size:27 final size:27
Alignment explanation
Indices: 73005273--73005384 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
73005263 AGCATGGCTG
* *
73005273 CCAGAACAGATAAT-GTGACAGTGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
73005299 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
* * * *
73005327 CCAGAATAGA-AATATGTGGCACAGCCA
1 CCAGAACAGATAAT-CGTGACAGAGCCA
* * * *
73005354 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
73005381 CCAG
1 CCAG
73005385 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:73015143 original size:28 final size:29
Alignment explanation
Indices: 73015111--73015166 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
73015101 TCTGAAGTAT
73015111 TGATAT-CATGGCCCGAA-GCCAAATCAGC
1 TGATATGCATGGCCC-AACGCCAAATCAGC
73015139 TGATATGCATGGCCCAACGCCAAATCAG
1 TGATATGCATGGCCCAACGCCAAATCAG
73015167 TACAATTCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (29 bp):
TGATATGCATGGCCCAACGCCAAATCAGC
Found at i:73015821 original size:20 final size:21
Alignment explanation
Indices: 73015781--73015822 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
73015771 AACTTGTATT
*
73015781 TCTATCAACAAGCATTCAAAA
1 TCTATCAACAAACATTCAAAA
*
73015802 TCTATCATCAAACA-TCAAAA
1 TCTATCAACAAACATTCAAAA
73015822 T
1 T
73015823 ACATGCTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (21 bp):
TCTATCAACAAACATTCAAAA
Found at i:73016936 original size:22 final size:23
Alignment explanation
Indices: 73016910--73016953 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
73016900 ATATATAGAC
*
73016910 CACAT-CATAAATATACTTAAGT
1 CACATGCACAAATATACTTAAGT
*
73016932 CACATGTACAAATATACTTAAG
1 CACATGCACAAATATACTTAAG
73016954 CTTACAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (23 bp):
CACATGCACAAATATACTTAAGT
Found at i:73020674 original size:24 final size:24
Alignment explanation
Indices: 73020607--73020676 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
73020597 GCTATCCAGT
73020607 GCTCCCTGA-TAATAACTCTT-TGGA
1 GCTCCCTGATTAA-AACTCTTAT-GA
* * *
73020631 GTTACCTG-TT-AAGCTC-TATGA
1 GCTCCCTGATTAAAACTCTTATGA
73020652 GCTCCCTGATTAAAACTCTTATGA
1 GCTCCCTGATTAAAACTCTTATGA
73020676 G
1 G
73020677 TTTCCTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
21 9 0.26
22 7 0.20
23 6 0.17
24 13 0.37
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (24 bp):
GCTCCCTGATTAAAACTCTTATGA
Found at i:73022253 original size:13 final size:13
Alignment explanation
Indices: 73022231--73022263 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73022221 AAGGGTTTGT
73022231 TTAT-TAAACTAA
1 TTATCTAAACTAA
73022243 TTATCTAAACTAA
1 TTATCTAAACTAA
*
73022256 TTAACTAA
1 TTATCTAA
73022264 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:73025166 original size:5 final size:5
Alignment explanation
Indices: 73025156--73025245 Score: 51
Period size: 6 Copynumber: 16.8 Consensus size: 5
73025146 TATGTCTTTC
* * *
73025156 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAGA AAAAT CAAAAG AAAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAA-T AAAAT -AAAAT A-AAAT
73025204 AAAAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT AATAAT AAAA
1 -AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AA-AAT AAAA
73025246 AGGAAGAGTC
Statistics
Matches: 67, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 25 0.37
6 35 0.52
7 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:73025190 original size:6 final size:6
Alignment explanation
Indices: 73025176--73025240 Score: 62
Period size: 6 Copynumber: 11.0 Consensus size: 6
73025166 AATAAAATTG
* * * *
73025176 AAATGA AAAGAA AAATCA AAAGAA AAATAA AAAT-A AAAT-A AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
73025222 AAATAA GAATAA ATAATAA
1 AAATAA AAATAA A-AATAA
73025241 TAAAAAGGAA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
5 10 0.21
6 33 0.69
7 5 0.10
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:73025207 original size:11 final size:11
Alignment explanation
Indices: 73025176--73025227 Score: 61
Period size: 11 Copynumber: 4.5 Consensus size: 11
73025166 AATAAAATTG
73025176 AAATGAAAAGAA
1 AAAT-AAAAGAA
73025188 AAATCAAAAGAA
1 AAAT-AAAAGAA
73025200 AAATAAAA-ATA
1 AAATAAAAGA-A
*
73025211 AAATAAAATAA
1 AAATAAAAGAA
73025222 AAATAA
1 AAATAA
73025228 GAATAAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 1 0.03
11 20 0.54
12 16 0.43
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (11 bp):
AAATAAAAGAA
Found at i:73025242 original size:22 final size:22
Alignment explanation
Indices: 73025187--73025246 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
73025177 AATGAAAAGA
*
73025187 AAAATCAAAAGAAAAATAAAAAT
1 AAAAT-AAAATAAAAATAAAAAT
*
73025210 AAAATAAAATAAAAATAAGAAT
1 AAAATAAAATAAAAATAAAAAT
73025232 -AAATAATAATAAAAA
1 AAAATAA-AATAAAAA
73025247 GGAAGAGTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 23 0.68
23 5 0.15
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAATAAAATAAAAATAAAAAT
Found at i:73029026 original size:37 final size:37
Alignment explanation
Indices: 73028985--73029058 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
73028975 TCTTCAAGGT
73028985 TTGATTTTTTCTCCTGTTGATAAGGTGGCTATTGAAA
1 TTGATTTTTTCTCCTGTTGATAAGGTGGCTATTGAAA
73029022 TTGATTTTTTCTCCTGTTGATAAGGTGGCTATTGAAA
1 TTGATTTTTTCTCCTGTTGATAAGGTGGCTATTGAAA
73029059 ACCCTGAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.46
Consensus pattern (37 bp):
TTGATTTTTTCTCCTGTTGATAAGGTGGCTATTGAAA
Found at i:73030602 original size:13 final size:13
Alignment explanation
Indices: 73030584--73030608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73030574 GGTTTGTTTA
73030584 TTAAACTAATTAT
1 TTAAACTAATTAT
73030597 TTAAACTAATTA
1 TTAAACTAATTA
73030609 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:73033536 original size:47 final size:46
Alignment explanation
Indices: 73033419--73033591 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
73033409 GGATGGTTGA
73033419 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
73033466 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
73033509 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
73033559 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
73033592 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:73033588 original size:93 final size:92
Alignment explanation
Indices: 73033419--73033588 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
73033409 GGATGGTTGA
* *
73033419 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
73033484 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
73033511 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
73033576 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
73033589 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73041000 original size:46 final size:46
Alignment explanation
Indices: 73040950--73041122 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
73040940 TGGTTGAGCA
73040950 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73040996 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73041041 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73041089 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73041123 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73041106 original size:93 final size:93
Alignment explanation
Indices: 73040947--73041117 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
73040937 GGATGGTTGA
* *
73040947 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73041012 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73041040 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73041105 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
73041118 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73042020 original size:20 final size:20
Alignment explanation
Indices: 73041983--73042025 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
73041973 CTATTCTGAC
* *
73041983 TTTAAAAATTCATAATAAAT
1 TTTAAAAAATAATAATAAAT
* *
73042003 TTTAAAAAATAATTATAAGT
1 TTTAAAAAATAATAATAAAT
73042023 TTT
1 TTT
73042026 TATTTATATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTAAAAAATAATAATAAAT
Found at i:73047723 original size:15 final size:15
Alignment explanation
Indices: 73047703--73047732 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73047693 CAGAGTTAGA
73047703 AAAGATTCACGATGT
1 AAAGATTCACGATGT
*
73047718 AAAGATTCATGATGT
1 AAAGATTCACGATGT
73047733 GTTTCATGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
AAAGATTCACGATGT
Found at i:73054391 original size:24 final size:24
Alignment explanation
Indices: 73054359--73054414 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
73054349 TCAGGAGAGA
73054359 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTTGATAAGGGATAGG
73054383 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTTGATAAGGGATAGG
73054407 ATTTAGGA
1 ATTTAGGA
73054415 TCAGATAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.36, T:0.30
Consensus pattern (24 bp):
ATTTAGGAGTTGATAAGGGATAGG
Found at i:73054421 original size:24 final size:24
Alignment explanation
Indices: 73054359--73054426 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 24
73054349 TCAGGAGAGA
*
73054359 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTAGATAAGGGATAGG
*
73054383 ATTTAGGAGTTGATAAGGGATAGG
1 ATTTAGGAGTAGATAAGGGATAGG
73054407 ATTTAGGA-TCAGATAAGGGA
1 ATTTAGGAGT-AGATAAGGGA
73054427 GGAAATCTAG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.35, C:0.01, G:0.35, T:0.28
Consensus pattern (24 bp):
ATTTAGGAGTAGATAAGGGATAGG
Found at i:73055885 original size:27 final size:26
Alignment explanation
Indices: 73055845--73055957 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
73055835 AGGAAGCATC
*
73055845 CTGGTGGCTATGCCACAATCATCTGAT
1 CTGGTGGCTCTGCCACAAT-ATCTGAT
* *
73055872 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
*
73055899 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-AATATCTG-AT
* * * *
73055927 CTGGTGACTCTGTCACACTATCTGTT
1 CTGGTGGCTCTGCCACAATATCTGAT
73055953 CTGGT
1 CTGGT
73055958 TGGGTGGGTC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.67
28 18 0.25
ACGTcount: A:0.15, C:0.26, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:73055951 original size:54 final size:53
Alignment explanation
Indices: 73055845--73055957 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 53
73055835 AGGAAGCATC
*
73055845 CTGGTGGCTATGCCACAATCATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATCATCTGATCTGGTGACTCTGCCACATA-TTCTGTT
* * * *
73055899 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACACTA-TCTGTT
1 CTGGTGGCTATGCCACAATCATCTG-ATCTGGTGACTCTGCCACA-TATTCTGTT
73055953 CTGGT
1 CTGGT
73055958 TGGGTGGGTC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 33 0.63
55 17 0.33
56 2 0.04
ACGTcount: A:0.15, C:0.26, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATCATCTGATCTGGTGACTCTGCCACATATTCTGTT
Found at i:73062156 original size:24 final size:24
Alignment explanation
Indices: 73062124--73062180 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
73062114 TGTCAGGAGA
73062124 GATTTAGGAGTTGATAAGGGATAG
1 GATTTAGGAGTTGATAAGGGATAG
73062148 GATTTAGGAGTTGATAAGGGATAG
1 GATTTAGGAGTTGATAAGGGATAG
73062172 GATTTAGGA
1 GATTTAGGA
73062181 TCAGATAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.37, T:0.30
Consensus pattern (24 bp):
GATTTAGGAGTTGATAAGGGATAG
Found at i:73062187 original size:24 final size:24
Alignment explanation
Indices: 73062124--73062192 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 24
73062114 TGTCAGGAGA
*
73062124 GATTTAGGAGTTGATAAGGGATAG
1 GATTTAGGAGTAGATAAGGGATAG
*
73062148 GATTTAGGAGTTGATAAGGGATAG
1 GATTTAGGAGTAGATAAGGGATAG
73062172 GATTTAGGA-TCAGATAAGGGA
1 GATTTAGGAGT-AGATAAGGGA
73062193 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
23 1 0.02
24 42 0.98
ACGTcount: A:0.35, C:0.01, G:0.36, T:0.28
Consensus pattern (24 bp):
GATTTAGGAGTAGATAAGGGATAG
Found at i:73063644 original size:27 final size:28
Alignment explanation
Indices: 73063606--73063659 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
73063596 AGCGTCCTGG
73063606 TGGCTATGCCACAATCATCTG-ATCTGA
1 TGGCTATGCCACAATCATCTGTATCTGA
* * *
73063633 TGGCTCTGCCACGATTATCTGTATCTG
1 TGGCTATGCCACAATCATCTGTATCTG
73063660 GTGACTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
TGGCTATGCCACAATCATCTGTATCTGA
Found at i:73066122 original size:16 final size:16
Alignment explanation
Indices: 73066103--73066133 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73066093 CTTCTTCACT
73066103 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
73066119 TACTTACTTACTTAA
1 TACTCACTTACTTAA
73066134 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:73066139 original size:20 final size:20
Alignment explanation
Indices: 73066100--73066139 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
73066090 TTACTTCTTC
* *
73066100 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
73066120 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
73066140 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:73066573 original size:55 final size:54
Alignment explanation
Indices: 73066323--73066579 Score: 232
Period size: 55 Copynumber: 4.9 Consensus size: 54
73066313 ATACACGGGT
* * * * * *
73066323 ACCTTACCATTACCATGACTT-GTCATGGTCTTACGTGGTATCCTT---TT-CA
1 ACCTTACCAATGCCATGCCTTGGACATGGTCTTACATGGTATCCTTGCCTTAGA
* * * * *
73066372 AGCTTACCATTGCCATGTC-TCGACATGGTCTTACATGGTGTCCTTGCCTTATGA
1 ACCTTACCAATGCCATGCCTTGGACATGGTCTTACATGGTATCCTTGCCTTA-GA
* *
73066426 A-CTCACCAATGCCATGCCTTGG-CATGGTCTTACATGGGA-CCTTTGCCTTATAGTA
1 ACCTTACCAATGCCATGCCTTGGACATGGTCTTACATGGTATCC-TTGCC-T-TAG-A
* *
73066481 ACC-TATCAATGCCATGTCTT-GACATGGTCTTACATGGTATCCTTGCCTTAGAA
1 ACCTTACCAATGCCATGCCTTGGACATGGTCTTACATGGTATCCTTGCCTTAG-A
73066534 ACCTTACCAATTGCCATGCCTTGGA-ATGGTCTTACATGGTATCCTT
1 ACCTTACCAA-TGCCATGCCTTGGACATGGTCTTACATGGTATCCTT
73066580 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 20, Indels: 28
0.78 0.09 0.13
Matches are distributed among these distances:
48 1 0.01
49 37 0.22
52 4 0.02
53 41 0.24
54 13 0.08
55 70 0.41
56 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (54 bp):
ACCTTACCAATGCCATGCCTTGGACATGGTCTTACATGGTATCCTTGCCTTAGA
Found at i:73071216 original size:40 final size:40
Alignment explanation
Indices: 73071169--73071313 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
73071159 CTCGCACAAG
* * * * *
73071169 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
73071209 GCCTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
73071249 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
73071290 GCCTTCGAGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73071314 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.64
41 27 0.30
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:73076591 original size:26 final size:26
Alignment explanation
Indices: 73076542--73076591 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
73076532 TTTGGTTGGA
*
73076542 AATTATATGATATGTGTGGTATTATG
1 AATTATATGATATGTGTGGAATTATG
* * *
73076568 AATTATATGGTATGTTTTGAATTA
1 AATTATATGATATGTGTGGAATTA
73076592 CCAAAAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (26 bp):
AATTATATGATATGTGTGGAATTATG
Found at i:73079904 original size:43 final size:43
Alignment explanation
Indices: 73079843--73079929 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
73079833 ATTTACAAAT
73079843 TTTCACAAGATCAAAAGTACCAATCGGAAATTGGTTAGTGTGA
1 TTTCACAAGATCAAAAGTACCAATCGGAAATTGGTTAGTGTGA
73079886 TTTCACAAGATCAAAAGTACCAATCGGAAATTGGTTAGTGTGA
1 TTTCACAAGATCAAAAGTACCAATCGGAAATTGGTTAGTGTGA
73079929 T
1 T
73079930 GTGTAACTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (43 bp):
TTTCACAAGATCAAAAGTACCAATCGGAAATTGGTTAGTGTGA
Found at i:73080418 original size:22 final size:22
Alignment explanation
Indices: 73080360--73080472 Score: 133
Period size: 22 Copynumber: 5.1 Consensus size: 22
73080350 CTTAAGCTGA
*
73080360 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATAGAGC
73080382 TGAA-ACGATAAGCTCTATAGAGC
1 TGAACA-G-TAAGCTCTATAGAGC
* *
73080405 TGAACAGTAAGCTCTATCGAGT
1 TGAACAGTAAGCTCTATAGAGC
*
73080427 TGAAC-GATAAGCTCTATCGAGC
1 TGAACAG-TAAGCTCTATAGAGC
73080449 TGAACAGTAAGCTC-ATATGAGC
1 TGAACAGTAAGCTCTATA-GAGC
73080471 TG
1 TG
73080473 TGCTGAGTCT
Statistics
Matches: 80, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
21 4 0.05
22 55 0.69
23 20 0.25
24 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATAGAGC
Found at i:73080449 original size:44 final size:45
Alignment explanation
Indices: 73080360--73080472 Score: 176
Period size: 44 Copynumber: 2.5 Consensus size: 45
73080350 CTTAAGCTGA
*
73080360 TGAACAGTAAGCTCTATTGAGCTGAAACGATAAGCTCTATAGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAAACGATAAGCTCTATAGAGC
* *
73080405 TGAACAGTAAGCTCTATCGAGTTG-AACGATAAGCTCTATCGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAAACGATAAGCTCTATAGAGC
73080449 TGAACAGTAAGCTCATAT-GAGCTG
1 TGAACAGTAAGCTC-TATCGAGCTG
73080473 TGCTGAGTCT
Statistics
Matches: 63, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
44 38 0.60
45 25 0.40
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTGAAACGATAAGCTCTATAGAGC
Found at i:73084055 original size:28 final size:28
Alignment explanation
Indices: 73083990--73084058 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
73083980 TATGTGGTAT
* *
73083990 TTAGTGTGGGAAATATTGAAAATGGCAC
1 TTAGTGTGTGAGATATTGAAAATGGCAC
* **
73084018 TTGGTGTGTGAGATATTGAGTATGGCAC
1 TTAGTGTGTGAGATATTGAAAATGGCAC
*
73084046 TTAGTTTGTGAGA
1 TTAGTGTGTGAGA
73084059 CATCGAAGAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.28, C:0.06, G:0.32, T:0.35
Consensus pattern (28 bp):
TTAGTGTGTGAGATATTGAAAATGGCAC
Found at i:73086578 original size:28 final size:28
Alignment explanation
Indices: 73086504--73086581 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
73086494 TATATATATG
* *
73086504 TGGCACTTAGTGTGCGAAACATTGAGAA
1 TGGCACTTAGTGTGCGAGACATGGAGAA
* * *
73086532 TGGCACTTGGTGTGCGAGATATGGAGTA
1 TGGCACTTAGTGTGCGAGACATGGAGAA
*
73086560 TGGCACTTAGTGTGTGAGACAT
1 TGGCACTTAGTGTGCGAGACAT
73086582 CGAAGATGCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.26, C:0.13, G:0.33, T:0.28
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAGACATGGAGAA
Found at i:73096079 original size:85 final size:86
Alignment explanation
Indices: 73095929--73096092 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 86
73095919 ATCTGAGATA
* * * * * * * *
73095929 TCGTGTAAGATCGTGTCTGGGACACAGGCCTCGATTTTAGAATTACGTGTAAGACCATGTTTGGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCTGGG
73095994 ACATCAACATTGTATCTTATT
66 ACATCAACATTGTATCTTATT
* *
73096015 TCGTGTAAGACCCTGTCTAGGACAGAGGCATTGATATT-GAATTACATGTAAGACCACGTCTGGG
1 TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCTGGG
**
73096079 ACATCGGCATTGTA
66 ACATCAACATTGTA
73096093 CTCGTTTATG
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 35 0.53
86 31 0.47
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCCTGTCTAGGACACAGGCATCGATATTAGAATTACATGTAAGACCACGTCTGGG
ACATCAACATTGTATCTTATT
Found at i:73098248 original size:17 final size:17
Alignment explanation
Indices: 73098226--73098261 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
73098216 AGCATTAATG
73098226 TGCAAAAGGTTTGAAGA
1 TGCAAAAGGTTTGAAGA
73098243 TGCAAAAGGTTTGAAGA
1 TGCAAAAGGTTTGAAGA
73098260 TG
1 TG
73098262 GGCTAAACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.25
Consensus pattern (17 bp):
TGCAAAAGGTTTGAAGA
Found at i:73106726 original size:15 final size:14
Alignment explanation
Indices: 73106670--73106786 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
73106660 TTATTATGTT
*
73106670 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
73106684 T-T-TTCTTATTCTAA
1 TCTATTTTTATT-T-A
*
73106698 TACTATTATTATTTA
1 T-CTATTTTTATTTA
73106713 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
73106728 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
73106742 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
73106757 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
* *
73106772 TTTATTTCTATTTA
1 TCTATTTTTATTTA
73106786 T
1 T
73106787 ATACTAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 24 0.29
15 37 0.45
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:73106739 original size:29 final size:28
Alignment explanation
Indices: 73106658--73106765 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
73106648 TTATTGCTAT
73106658 TATTATTATGTT-TCTATTTATATTTAT-
1 TATTATTAT-TTATCTATTTATATTTATC
*
73106685 T-TTCTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATT-T-AT-CTATTTA-TATTTATC
* *
73106715 TAATTTTTATTTATCTATTTATATTTCTAC
1 T-ATTATTATTTATCTATTTATATTTAT-C
73106745 TATTATTATATT-TCTATTTAT
1 TATTATTAT-TTATCTATTTAT
73106766 TATATTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 4 0.06
29 35 0.53
30 10 0.15
31 1 0.02
32 7 0.11
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (28 bp):
TATTATTATTTATCTATTTATATTTATC
Found at i:73106755 original size:17 final size:15
Alignment explanation
Indices: 73106733--73106778 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
73106723 ATTTATCTAT
73106733 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
73106750 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
73106765 TTATATTTTTATTT
1 TTATATTTCTATTT
73106779 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:73106822 original size:52 final size:54
Alignment explanation
Indices: 73106701--73106822 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
73106691 ATTCTAATAC
* * *
73106701 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
73106753 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
73106802 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
73106823 ATGTTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:73106860 original size:4 final size:4
Alignment explanation
Indices: 73106851--73106875 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
73106841 ATTAACATTC
73106851 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
73106876 TACATTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:73107017 original size:25 final size:25
Alignment explanation
Indices: 73106927--73107018 Score: 76
Period size: 25 Copynumber: 3.6 Consensus size: 25
73106917 CTCATTTAAA
* * *
73106927 TTTTTATACATTATTTACTTTAATA
1 TTTTTATACATTATATATTTTAATT
* * *
73106952 TTTTCATATATTATATATTTCAAACTT
1 TTTTTATACATTATATATTT-TAA-TT
* *
73106979 TTTTTCACACATTATATATTTTGATT
1 TTTTT-ATACATTATATATTTTAATT
*
73107005 TTTTTATATATTAT
1 TTTTTATACATTAT
73107019 TTTTAAAGAG
Statistics
Matches: 51, Mismatches: 13, Indels: 6
0.73 0.19 0.09
Matches are distributed among these distances:
25 23 0.45
26 9 0.18
27 6 0.12
28 13 0.25
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (25 bp):
TTTTTATACATTATATATTTTAATT
Found at i:73113949 original size:177 final size:177
Alignment explanation
Indices: 73113653--73114028 Score: 583
Period size: 177 Copynumber: 2.1 Consensus size: 177
73113643 AACGACATCG
*
73113653 GAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGATGGCGAGTCTTATCTC
1 GAAAATTACAGATCTTATCTCCCTAAGAAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTC
* *
73113718 TATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCAG
66 CATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCAG
* *
73113783 GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATT
131 GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
* * * * *
73113830 GAAAATTGCAAATCTTATCTCCCTAA-ACAGTAGCGGAGCAGATCAAATATGGTGATTCTTATCT
1 GAAAATTACAGATCTTATCTCCCTAAGA-AGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCT
* * ** *
73113894 CCATGTATCGGCTATGGAGTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTA
65 CCATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCA
* *
73113959 GGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACT
130 GGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
73114007 GAAAATTACAGATCTTATCTCC
1 GAAAATTACAGATCTTATCTCC
73114029 ATGTATCGGC
Statistics
Matches: 179, Mismatches: 19, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
176 1 0.01
177 178 0.99
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (177 bp):
GAAAATTACAGATCTTATCTCCCTAAGAAGTAGCGGAGCAGATCAAAGATGGCGAGTCTTATCTC
CATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATATCTCTGATGTAGCAAGAGAGCAG
GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT
Found at i:73113965 original size:133 final size:132
Alignment explanation
Indices: 73113886--73114183 Score: 355
Period size: 133 Copynumber: 2.2 Consensus size: 132
73113876 ATATGGTGAT
* *
73113886 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCAG-TCTTATATCTCTGATGTAGC
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCT-TTATATCTCTGAGGTAGC
* * * * * * *
73113950 AAGAGAGTAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTA
65 AAGAGAGTAGGTTGAAAATACAAATCTTATCTCCCTAAAGTAGC-AGTAAGCAGACTCAAAATTA
73114015 CAGA
129 CAGA
*
73114019 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATATCTCTGAGGTAGCA
* ** * * * * * *
73114084 AGAGAGTAGGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC
66 AGAGAGTAGGTTGAAAATACAAATCTTATCTCCCTAAAGTAGC-AGTAAGCAGACTCAAAATTAC
73114149 AGA
130 AGA
* * * *
73114152 TCTTATCTTCATGTATCAGATATGGAGTAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
73114184 CTAAAATGGC
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
133 151 0.99
134 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATATCTCTGAGGTAGCA
AGAGAGTAGGTTGAAAATACAAATCTTATCTCCCTAAAGTAGCAGTAAGCAGACTCAAAATTACA
GA
Found at i:73114382 original size:311 final size:310
Alignment explanation
Indices: 73113709--73114366 Score: 833
Period size: 311 Copynumber: 2.1 Consensus size: 310
73113699 AGATGGCGAG
* * * ** * * * *
73113709 TCTTATCTCTATGTATCGGCTATGGAGCAGAAT-TTAGCCACCAACCTTATCTCTCTGATGTAGC
1 TCTTATCTCCATGTAGCAGCTATGGAGCAG-ATGAAAACCACCAGCTTTATCTCTCTGAGGTAGC
* * * * * *
73113773 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATTGAAAATTG
65 AAGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTA
* * *
73113838 CAAATCTTATCTCCCTAAACAGTAGCGGAGCAGATCAAATATGGTGATTCTTATCTCCATGTATC
130 CAAATCTTATCTCCATAAACAGTAGCGGAGCAGATCAAATATGGCGAGTCTTATCTCCATGTATC
* * ** * * *
73113903 GGCTATGGAGTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGA
195 GACTATGGAGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAAGA
*
73113968 TACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTACAGA
260 TACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
* * *** *
73114019 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTAGCAGCTATGGAGCAGATGAAAACCACCAGCTTTATCTCTCTGAGGTAGCA
* *
73114084 AGAGAGTAGGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC
* * * * * * *
73114149 AGATCTTATCTTCATGTATCAGATA-TGGAGTAGATCTAAA-ATGGCGAGTCTTATCTCTATGTA
131 AAATCTTATCTCCAT-AAACAG-TAGCGGAGCAGATC-AAATATGGCGAGTCTTATCTCCATGTA
*
73114212 TCGACTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAA
193 TCGACTATGGAGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAA
73114277 GATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
258 GATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
73114330 TCTTATCTCC-T-TAAGCAG-TAGTGGAGCAGATCGAAAA
1 TCTTATCTCCATGT-AGCAGCTA-TGGAGCAGAT-GAAAA
73114367 TGGCGAGTAT
Statistics
Matches: 304, Mismatches: 37, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
309 5 0.02
310 141 0.46
311 153 0.50
312 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (310 bp):
TCTTATCTCCATGTAGCAGCTATGGAGCAGATGAAAACCACCAGCTTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC
AAATCTTATCTCCATAAACAGTAGCGGAGCAGATCAAATATGGCGAGTCTTATCTCCATGTATCG
ACTATGGAGCAGATTTTAGCCACCAACCTTATATCTCTAAGGTAGCAAGAGAGCAGGTTGAAGAT
ACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGA
Found at i:73114707 original size:133 final size:133
Alignment explanation
Indices: 73114551--73114848 Score: 470
Period size: 133 Copynumber: 2.2 Consensus size: 133
73114541 AGATGGCGAT
* * * *
73114551 TCTTATCTCCATGTATCGCCTATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
* * *
73114616 AGAGAGTAGGTTGAAGATACAAGTATTATCTTCTTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
73114681 AGA
131 AGA
* * *
73114684 TCTTATCTTCATGTATCGGCTATGAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
* * *
73114749 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
73114814 AGA
131 AGA
*
73114817 TCTTATCTCCATGTATCAACTATGGAGCAGAT
1 TCTTATCTCCATGTATCGACTATGGAGCAGAT
73114849 CTAAAATGGC
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
133 149 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAAACTAAAAATTAC
AGA
Found at i:73114736 original size:177 final size:177
Alignment explanation
Indices: 73114019--73114695 Score: 955
Period size: 177 Copynumber: 3.8 Consensus size: 177
73114009 AAATTACAGA
*
73114019 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
73114084 AGAGAGTAGGTTGAAGATACAGGTATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
* * *
73114149 AGATCTTATCTTCATGTATCAGATA-TGGAGTAGATCTAAAATGGCGAG
131 AGATCTTATCTTCAT-TAGCAG-TAGTGGAGCAGATCTAAAATGGCCAG
* * * *
73114197 TCTTATCTCTATGTATCGACTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * *
73114262 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
* * *
73114327 AGATCTTATC-TCCTTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
131 AGATCTTATCTTCATT-AGCAGTAGTGGAGCAGATCTAAAATGGCCAG
* * * *
73114374 TATTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * * *
73114439 AGAGAGCAGGTTGAAGATACGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAAATTGC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
* * * * * *
73114504 AGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC-AAAGATGGCGAT
131 AGATCTTATCTTCATTAGCAGTAGTGGAGCAGATCTAAA-ATGGCCAG
* * ** *
73114551 TCTTATCTCCATGTATCGCCTATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* *
73114616 AGAGAGTAGGTTGAAGATACAAGTATTATCTTCTTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
66 AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
73114681 AGATCTTATCTTCAT
131 AGATCTTATCTTCAT
73114696 GTATCGGCTA
Statistics
Matches: 447, Mismatches: 48, Indels: 9
0.89 0.10 0.02
Matches are distributed among these distances:
176 6 0.01
177 309 0.69
178 132 0.30
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (177 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTATTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTAC
AGATCTTATCTTCATTAGCAGTAGTGGAGCAGATCTAAAATGGCCAG
Found at i:73114923 original size:665 final size:665
Alignment explanation
Indices: 73113653--73115208 Score: 2603
Period size: 665 Copynumber: 2.3 Consensus size: 665
73113643 AACGACATCG
*
73113653 GAAAATTACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATC-AAAGATGGCGAGTCTTATCT
1 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAA-ATGGCGAGTCTTATCT
* * *
73113717 CTATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCA
65 CCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCA
* * *
73113782 GGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATTGAAAATTGCAAATCTTA
130 GGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGCAGATCTTA
* * * *
73113847 TCTCCCTAAACAGTAGCGGAGCAGATCAAATATGGTGATTCTTATCTCCATGTATCGGCTATGGA
195 TCTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGCGATTCTTATCTCCATGTATCGCCTATGGA
* *
73113912 GTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTCT
260 GCAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTAT
* * *
73113977 TATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
325 TATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* *
73114042 GGAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATACAGG
390 GAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGG
* *
73114107 TATTATCTTCCTGAGGTAGCAAGAAAGCAGACTAAAAATTACAGATCTTATCTTCATGTATCAGA
455 TATTATCTTCCTGAGGTAGCAAGAAAGCAAACTAAAAATTACAGATCTTATCTCCATGTATCAGA
* *
73114172 TATGGAGTAGATCTAAAATGGCGAGTCTTATCTCTATGTATCGACTATGGAGCAGATTTTAGCCA
520 TATGGAGCAGATCTAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCA
*
73114237 CCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGT
585 CCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAGATACAAGTCTTATCTTCCTGAGGT
73114302 AGCAAGGAAGTAGACT
650 AGCAAGGAAGTAGACT
* *
73114318 GAAAATTACAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTATTATCTC
1 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTCTTATCTC
* * *
73114383 CATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAACAAGAGAGCAG
66 CATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCAG
* * *
73114448 GTTGAAGATACGAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAAATTGCAGATCTTAT
131 GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGCAGATCTTAT
73114513 CTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGCGATTCTTATCTCCATGTATCGCCTATGGAG
196 CTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGCGATTCTTATCTCCATGTATCGCCTATGGAG
* * *
73114578 CAGATTTTAGCCACTAGTTTTATCTCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTATT
261 CAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTATT
* *
73114643 ATCTTCTTGAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTTCATGTATCGGCTATG
326 ATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATG
73114708 AAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGGT
391 AAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGGT
* * *
73114773 CTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTACAGATCTTATCTCCATGTATCA-AC
456 ATTATCTTCCTGAGGTAGCAAGAAAGCAAACTAAAAATTACAGATCTTATCTCCATGTATCAGA-
*
73114837 TATGGAGCAGATCTAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGTAGATTTTAGCCA
520 TATGGAGCAGATCTAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCA
* * *
73114902 CCAGCCTTATCTCTCTAAGGTAGCAAGAGAGGAGATTGAAGATACAGGTCTTATCTTCCTGAGGT
585 CCAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAGATACAAGTCTTATCTTCCTGAGGT
73114967 AGCAAGGAAGTAGACT
650 AGCAAGGAAGTAGACT
*
73114983 GAAAATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTCTTATCTC
1 GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTCTTATCTC
* **
73115048 CATGTATCGGCAATGGAGCAGATTTTAGCCACCAACGTTATCTCTCTGATGTAGCAAGAGAGTTG
66 CATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCAG
* * *
73115113 GCTGAAGATACAAGTCTTATCTTCCTGGGGTAGCAAGGAAGCAGACTGAAAATTACAGATCTTAT
131 GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGCAGATCTTAT
* * *
73115178 CTTCCTAAGCAGTAGTGGAGCAGATCGAAGA
196 CTCCCTAAGCAGTAGCGGAGCAGATCAAAGA
73115209 CGGTGAGCCT
Statistics
Matches: 828, Mismatches: 61, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
664 1 0.00
665 824 1.00
666 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (665 bp):
GAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTCTTATCTC
CATGTATCGGCAATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGATGTAGCAAGAGAGCAG
GTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGCAGATCTTAT
CTCCCTAAGCAGTAGCGGAGCAGATCAAAGATGGCGATTCTTATCTCCATGTATCGCCTATGGAG
CAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTATT
ATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTATG
AAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACAGGT
ATTATCTTCCTGAGGTAGCAAGAAAGCAAACTAAAAATTACAGATCTTATCTCCATGTATCAGAT
ATGGAGCAGATCTAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCAC
CAACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGAAGATACAAGTCTTATCTTCCTGAGGTA
GCAAGGAAGTAGACT
Found at i:73115107 original size:488 final size:483
Alignment explanation
Indices: 73113709--73115179 Score: 1781
Period size: 488 Copynumber: 3.0 Consensus size: 483
73113699 AGATGGCGAG
* *
73113709 TCTTATCTCTATGTATCGGCTATGGAGCAGAATTTAGCCACCAACCTTATCTCTCTGATGTAGCA
1 TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGCA
* * *
73113774 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCGGATTGAAAATTGC
66 AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * * *
73113839 AAATCTTATCTCCCTAAACAGTAGCGGAGCAGATCAAATATGGTGATTCTTATCTCCATGTATCG
131 AGATCTTATCT-CCTTAACAGTAGTGGAGCAGATCAAA-ATGGCGAGTCTTATCTCCATGTATCG
* * * *
73113904 GCTATGGAGTAGATTTTAGCCACCAGTCTTATATCTCTGATGTAGCAAGAGAGTAGGTTGAAGAT
194 GCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAGCAAGAGAGCAGGTTGAAGAT
* * * *
73113969 ACAAGTCTTATCTTCCTGAGGTAGCAAGTAAGTAGACTGAAAATTACAGATCTTATCTCCATGTA
259 ACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGATCTTATCTCCCT-AA
* * *** **** * * *
73114034 TCGGCTA-TGGAGCAGATTTTAGCCACCAG-CTTTATCTCTC-TG-AGGT-AGCAA-GAGAGTAG
323 GCAG-TAGTGGAGCAGATCAAAATGGCGAGTC-TTATCTC-CATGTA--TCGGCAATG-GAGCAG
* ** ** * * * * * * *
73114093 GTTGAAGATA-C-AGGTATTATCT-TCCTGAGGTAGCAAGAAAGCAGACTAAAAATTAC-AGATC
382 ATTTTAGCCACCAACG--TTATCTCT-CTGATGTAGCAAGAGAGTAGGCTGAAGA-TACAAG-TC
* **
73114154 TTATCTTCATGTA--TCAG-ATATGG-AGTAGATCTAAAATGGC-GA
442 TTATCTTCATG-AGGT-AGCA-A-GGAAGCAGA-CTAAAATTACAGA
* *
73114196 GTCTTATCTCTATGTATCGACTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTAAGGTAGC
1 -TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGC
*
73114261 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTA
65 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTA
*
73114326 CAGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTATTATCTCCATGTATC
130 CAGATCTTATCTCCTTAA-CAGTAGTGGAGCAGATC-AAAATGGCGAGTCTTATCTCCATGTATC
* * *
73114391 GGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAACAAGAGAGCAGGTTGAAGA
193 GGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAGCAAGAGAGCAGGTTGAAGA
* * * *
73114456 TAC-GAGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTAAAAATTGCAGATCTTATCTCCCTA
258 TACAG-GTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGATCTTATCTCCCTA
* * * *
73114520 AGCAGTAGCGGAGCAGATCAAAGATGGCGATTCTTATCTCCATGTATCGCCTATGGAGCAGATTT
322 AGCAGTAGTGGAGCAGATCAAA-ATGGCGAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTT
* *** * * *
73114585 TAGCCACTAGTTTTATCTCTCTGATGTAGCAAGAGAGTAGGTTGAAGATACAAGTATTATCTTCT
386 TAGCCACCAACGTTATCTCTCTGATGTAGCAAGAGAGTAGGCTGAAGATACAAGTCTTATCTTCA
73114650 TGAGGTAGCAAGGAAGCAGACTAAAAATTACAGA
451 TGAGGTAGCAAGGAAGCAGACT-AAAATTACAGA
* * *
73114684 TCTTATCT-TCATGTATCGGCTATGAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGC
1 TCTTATCTCT-ATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGC
* *
73114748 AAGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTA
65 AAGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTA
* *
73114813 CAGATCTTATCTCCATGTATCAACTA-TGGAGCAGATCTAAAATGGCGAGTCTTATCTCCATGTA
130 CAGATCTTATCTCC-T-TAAC-AGTAGTGGAGCAGATC-AAAATGGCGAGTCTTATCTCCATGTA
* * * * *
73114877 TCGACTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGAGAGGAGATTGAA
191 TCGGCTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAGCAAGAGAGCAGGTTGAA
*
73114942 GATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTATAGATCTTATCTCCCT
256 GATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGATCTTATCTCCCT
73115007 AAGCAGTAGTGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATCGGCAATGGAGCAGATT
321 AAGCAGTAGTGGAGCAGATC-AAAATGGCGAGTCTTATCTCCATGTATCGGCAATGGAGCAGATT
*
73115072 TTAGCCACCAACGTTATCTCTCTGATGTAGCAAGAGAGTTGGCTGAAGATACAAGTCTTATCTTC
385 TTAGCCACCAACGTTATCTCTCTGATGTAGCAAGAGAGTAGGCTGAAGATACAAGTCTTATCTTC
* *
73115137 CTGGGGTAGCAAGGAAGCAGACTGAAAATTACAGA
450 ATGAGGTAGCAAGGAAGCAGACT-AAAATTACAGA
73115172 TCTTATCT
1 TCTTATCT
73115180 TCCTAAGCAG
Statistics
Matches: 852, Mismatches: 105, Indels: 52
0.84 0.10 0.05
Matches are distributed among these distances:
486 8 0.01
487 181 0.21
488 647 0.76
489 16 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (483 bp):
TCTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTCCTTAACAGTAGTGGAGCAGATCAAAATGGCGAGTCTTATCTCCATGTATCGGC
TATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGACGTAGCAAGAGAGCAGGTTGAAGATAC
AGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTACAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCAAAATGGCGAGTCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCC
ACCAACGTTATCTCTCTGATGTAGCAAGAGAGTAGGCTGAAGATACAAGTCTTATCTTCATGAGG
TAGCAAGGAAGCAGACTAAAATTACAGA
Found at i:73115150 original size:177 final size:177
Alignment explanation
Indices: 73114684--73115206 Score: 787
Period size: 177 Copynumber: 2.9 Consensus size: 177
73114674 AAATTACAGA
* * *
73114684 TCTTATCTTCATGTATCGGCTATGAAGCAGATTTTAGCCACCAGCTTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
*
73114749 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
* * * * *
73114814 AGATCTTATCTCCATGTATCAACTA-TGGAGCAGATCTAAAATGGCGAG
131 AGATCTTATCTCCCT-AAGC-AGTAGTGGAGCAGATCGAAAATGGCGAG
* * *
73114862 TCTTATCTCCATGTATCGACTATGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTAAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
* * * *
73114927 AGAGAGGAGATTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAAATTAT
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
73114992 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
131 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
* * * *
73115039 TCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAACGTTATCTCTCTGATGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
** * * *
73115104 AGAGAGTTGGCTGAAGATACAAGTCTTATCTTCCTGGGGTAGCAAGGAAGCAGACTGAAAATTAC
66 AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
*
73115169 AGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAA
131 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA
73115207 GACGGTGAGC
Statistics
Matches: 312, Mismatches: 32, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
176 3 0.01
177 176 0.56
178 133 0.43
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
AGAGAGCAGGTTGAAGATACAGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTAC
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGGCGAG
Found at i:73115222 original size:44 final size:44
Alignment explanation
Indices: 73115173--73115688 Score: 215
Period size: 44 Copynumber: 11.6 Consensus size: 44
73115163 AATTACAGAT
*
73115173 CTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * *
73115217 CTTATCCCCCTAAGCAGTAG-GGAAAACAG-GCTGAAAATGACAGATCA-C
1 CTTATCTCCCTAAGCAGTAGTGG--AGCAGATC-G--AA-GAC-GGTGAGC
* * * * * *
73115265 CCTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAAGACTGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * *** *
73115309 CTTATAC-CCCTAAGCAGTAG-GGAAACAG-GCTGAAAATTAT-AGAT
1 CTTAT-CTCCCTAAGCAGTAGTGG-AGCAGATC-GAAGACGGTGAG-C
**
73115353 CTTATCTCCCTAAAAAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * *
73115397 CTTATCCCCCTAAGCAGTAG-GGAAGCAGGCTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* * * *
73115441 CTTATCTCCCTAAGCAGTAGTGAAGCTGATCAAAGACAGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * * *
73115485 CTTATCCCCCTAAGCAGTAG-GGAAACAGGTTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* *
73115529 CTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTGAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * * * * *
73115573 CTTATCCCCCTAAGCAGTAG-GGAAACAGGCTGGAA-A--TTACAGAT
1 CTTATCTCCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGT-GAG-C
* *
73115617 CTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTGATC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
* * * *
73115661 CTTATCTCCTTGAGCAATAGTAGAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAG
73115689 GCTTGAAATT
Statistics
Matches: 340, Mismatches: 90, Indels: 84
0.66 0.18 0.16
Matches are distributed among these distances:
42 3 0.01
43 34 0.10
44 231 0.68
45 37 0.11
46 3 0.01
47 6 0.02
48 21 0.06
49 5 0.01
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.22
Consensus pattern (44 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
Found at i:73115397 original size:88 final size:88
Alignment explanation
Indices: 73115149--73115734 Score: 782
Period size: 88 Copynumber: 6.6 Consensus size: 88
73115139 GGGGTAGCAA
* * *
73115149 GGAAGCAGACTGAAAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
73115214 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * * * *
73115237 GGAAAACAGGCTGAAAATGACAGATCACCCTATCTCCTTAAGCAGTAGTGGAGTAGGTTGAAGAC
1 GG-AAACAGGCTGAAAATTACAGAT---CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC
* *
73115302 TGTGAGCCTTATACCCCTAAGCAGTAG
62 GGTGAGCCTTATCCCCCTAAGCAGTAG
* **
73115329 GGAAACAGGCTGAAAATTATAGATCTTATCTCCCTAAAAAGTAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
73115394 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * * * *
73115417 GGAAGCAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGAAGCTGATCAAAGACAGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
73115482 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* * * *
73115505 GGAAACAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGATGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
73115570 AGCCTTATCCCCCTAAGCAGTAG
66 AGCCTTATCCCCCTAAGCAGTAG
* *
73115593 GGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTG
1 GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
* * * * *
73115658 ATCCTTATCTCCTTGAGCAATA-
66 AGCCTTATCCCCCTAAGCAGTAG
* * *
73115680 GTAGAGCAGGCTTG-AAATTACAGATCATATCTCCCTAAGCTA-TAGTGGAGCAGAT
1 GGA-AACAGGC-TGAAAATTACAGATCTTATCTCCCTAAGC-AGTAGTGGAGCAGAT
73115735 TGAAATGAAA
Statistics
Matches: 441, Mismatches: 50, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
87 2 0.00
88 339 0.77
89 22 0.05
91 20 0.05
92 58 0.13
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (88 bp):
GGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTG
AGCCTTATCCCCCTAAGCAGTAG
Found at i:73116669 original size:17 final size:18
Alignment explanation
Indices: 73116644--73116754 Score: 56
Period size: 17 Copynumber: 6.0 Consensus size: 18
73116634 GCTATTATTA
*
73116644 TTATGTTTCTATTTATAT
1 TTATATTTCTATTTATAT
73116662 TTAT-TTTCTTATTCTA-A-
1 TTATATTTC-TATT-TATAT
73116679 -TACTATTAT-TATTTATCTAT
1 TTA-TATT-TCTATTTA--TAT
*
73116699 TTATATTTCTA-CTAT-T
1 TTATATTTCTATTTATAT
73116715 ATTATATTTCTATTTATTATAT
1 -TTATATTTCTA--T-TTATAT
*
73116737 TTTTATTTCTATTTATAT
1 TTATATTTCTATTTATAT
73116755 ACTAATATTA
Statistics
Matches: 73, Mismatches: 3, Indels: 34
0.66 0.03 0.31
Matches are distributed among these distances:
16 5 0.07
17 21 0.29
18 17 0.23
19 8 0.11
20 6 0.08
21 15 0.21
22 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATATTTCTATTTATAT
Found at i:73116702 original size:29 final size:28
Alignment explanation
Indices: 73116670--73116732 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
73116660 ATTTATTTTC
73116670 TTATTCTAATACTATTATTAT-TTATCTAT
1 TTATT-TAATACTATTATTATATT-TCTAT
**
73116699 TTATATTTCTACTATTATTATATTTCTAT
1 TTAT-TTAATACTATTATTATATTTCTAT
73116728 TTATT
1 TTATT
73116733 ATATTTTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.03
29 26 0.87
30 3 0.10
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (28 bp):
TTATTTAATACTATTATTATATTTCTAT
Found at i:73116728 original size:43 final size:43
Alignment explanation
Indices: 73116639--73116783 Score: 125
Period size: 43 Copynumber: 3.3 Consensus size: 43
73116629 TTATTGCTAT
* ** * * * *
73116639 TATTATTATGTTTCTATTTATATTTATTTTCTTATTCTAATAC
1 TATTATTATATTTCTATTTATATTTATACTATTATTATATTTC
*
73116682 TATTATTAT-TTATCTATTTATATTTCTACTATTATTATATTTC
1 TATTATTATATT-TCTATTTATATTTATACTATTATTATATTTC
* * *
73116725 TATTTATTATATTTTTATTTCTATTTATATACTAATATTAT-TTTC
1 TA-TTATTATATTTCTATTTATA-TT-TATACTATTATTATATTTC
*
73116770 -ATTATTATTTTTCT
1 TATTATTATATTTCT
73116784 TATATATGTT
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
42 2 0.02
43 46 0.55
44 16 0.19
45 8 0.10
46 12 0.14
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (43 bp):
TATTATTATATTTCTATTTATATTTATACTATTATTATATTTC
Found at i:73116731 original size:15 final size:15
Alignment explanation
Indices: 73116699--73116744 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
73116689 ATTTATCTAT
73116699 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
73116716 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
73116731 TTATATTTTTATTT
1 TTATATTTCTATTT
73116745 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:73120001 original size:44 final size:42
Alignment explanation
Indices: 73119859--73120020 Score: 157
Period size: 44 Copynumber: 3.8 Consensus size: 42
73119849 AGCTCGTACA
* * * * *
73119859 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATAT-G
* * * *
73119902 ATGCCACTGTCCCAGACAGGGTCTT-CACAAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
* *
73119943 ATGTCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATATG
* *
73119987 ATGCCAATGTCCCAGACGTGTTCTTACACGAAAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAT
73120021 TACATATCGG
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 23 0.24
42 14 0.15
43 26 0.27
44 27 0.28
45 6 0.06
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATG
Found at i:73121607 original size:28 final size:28
Alignment explanation
Indices: 73121562--73121617 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
73121552 CAGTATCATT
* * *
73121562 ATAGTCTGGGCCTTAGCCCTATACAGTA
1 ATAGTCTGGACCTAAGCCCAATACAGTA
*
73121590 ATAGTGTGGACCTAAGCCCAATACAGTA
1 ATAGTCTGGACCTAAGCCCAATACAGTA
73121618 TCAGAAGAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.25
Consensus pattern (28 bp):
ATAGTCTGGACCTAAGCCCAATACAGTA
Found at i:73123918 original size:28 final size:28
Alignment explanation
Indices: 73123878--73123938 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
73123868 TTAGTTCATT
* * *
73123878 ACAGTCTGGGCCTTAGCCCTATACAGTA
1 ACAGTCTAGGCCTAAGCCCAATACAGTA
73123906 ACAGTCTAGGCCTAAGCCCAATACAGTA
1 ACAGTCTAGGCCTAAGCCCAATACAGTA
*
73123934 TCAGT
1 ACAGT
73123939 ATGGTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (28 bp):
ACAGTCTAGGCCTAAGCCCAATACAGTA
Found at i:73124144 original size:27 final size:27
Alignment explanation
Indices: 73124089--73124153 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
73124079 AGCATAGCTG
* *
73124089 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
* * *
73124116 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
73124143 CCAGT-ACAGTA
1 CCAGTAACAGTA
73124154 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGCCA
Found at i:73124319 original size:27 final size:27
Alignment explanation
Indices: 73124289--73124379 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
73124279 GGGCATAATT
*
73124289 GTCATTGTACTATACAGGGGTATTACG
1 GTCATTTTACTATACAGGGGTATTACG
* *
73124316 GTCATTTTATCCTAT--AGAGGCATTACG
1 GTCATTTTA--CTATACAGGGGTATTACG
**
73124343 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACTATACAGGGGTATTACG
*
73124370 ATCATTTTAC
1 GTCATTTTAC
73124380 CTATTTTAGG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.04
27 46 0.88
29 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACTATACAGGGGTATTACG
Found at i:73124380 original size:27 final size:27
Alignment explanation
Indices: 73124301--73124380 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
73124291 CATTGTACTA
*
73124301 TACAGGGGTATTACGGTCATTTTATCC
1 TACAGGGGTATTACGGTCATTTTACCC
* * *
73124328 TATAGAGGCATTACGGTCATTTTACCC
1 TACAGGGGTATTACGGTCATTTTACCC
*
73124355 TACAGGGGTATTACGATCATTTTACC
1 TACAGGGGTATTACGGTCATTTTACC
73124381 TATTTTAGGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (27 bp):
TACAGGGGTATTACGGTCATTTTACCC
Found at i:73132815 original size:28 final size:28
Alignment explanation
Indices: 73132753--73132818 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
73132743 ACCCAAGTCT
*
73132753 ACGGATTCATGCTTTGCAAAACATACCG
1 ACGGATTCATGCTTTGCAAAACATACCA
* *
73132781 GCAGATTCATGCTTTGCAAAACATACCA
1 ACGGATTCATGCTTTGCAAAACATACCA
73132809 ACGGATTCAT
1 ACGGATTCAT
73132819 AAGGAAGACC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (28 bp):
ACGGATTCATGCTTTGCAAAACATACCA
Found at i:73147362 original size:43 final size:43
Alignment explanation
Indices: 73147311--73147426 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
73147301 GTTTATTTAA
*
73147311 AAAAACGCCGCTAAAGATCATGACCTTTAACGACGTTTTTCCC
1 AAAAACGCCGCTAAAGATCATGACCTTTAACGACGCTTTTCCC
* * * * * *
73147354 ACAAACGCCACTAAAGATCAGGACCTTTAGCGGCGCTTTTCTC
1 AAAAACGCCGCTAAAGATCATGACCTTTAACGACGCTTTTCCC
* * *
73147397 AAAAACGCCGCTAAAAATTATGACATTTAA
1 AAAAACGCCGCTAAAGATCATGACCTTTAA
73147427 AAAAAATATT
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCATGACCTTTAACGACGCTTTTCCC
Found at i:73148887 original size:15 final size:16
Alignment explanation
Indices: 73148861--73148891 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
73148851 TCTCTCTTGC
73148861 TTTTAGATCATATATA
1 TTTTAGATCATATATA
73148877 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
73148892 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:73152199 original size:17 final size:18
Alignment explanation
Indices: 73152177--73152215 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
73152167 TATTACTTAA
*
73152177 TTTTAA-ATTTTTTTTAT
1 TTTTAACATATTTTTTAT
73152194 TTTTAACATATTTTTTAT
1 TTTTAACATATTTTTTAT
73152212 TTTT
1 TTTT
73152216 TTCTTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTAACATATTTTTTAT
Found at i:73152333 original size:8 final size:8
Alignment explanation
Indices: 73152322--73152363 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
73152312 AAATATTAAA
73152322 TTTTTTAT
1 TTTTTTAT
73152330 TTTTTTA-
1 TTTTTTAT
73152337 TTTTTTAT
1 TTTTTTAT
**
73152345 TTTTAGAT
1 TTTTTTAT
*
73152353 TTTTTAAT
1 TTTTTTAT
73152361 TTT
1 TTT
73152364 AAATTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 7 0.24
8 22 0.76
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (8 bp):
TTTTTTAT
Found at i:73152339 original size:15 final size:15
Alignment explanation
Indices: 73152321--73152370 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
73152311 TAAATATTAA
**
73152321 ATTTTTTATTTTTTT
1 ATTTTTTATTTTTAG
73152336 ATTTTTTATTTTTAG
1 ATTTTTTATTTTTAG
* *
73152351 ATTTTTTAATTTTAA
1 ATTTTTTATTTTTAG
73152366 ATTTT
1 ATTTT
73152371 AAAATTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (15 bp):
ATTTTTTATTTTTAG
Found at i:73153166 original size:21 final size:21
Alignment explanation
Indices: 73153152--73153198 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
73153142 CCTAACACTT
73153152 AACCCCTAACCCCTAAGCCTTA
1 AACCCC-AACCCCTAAGCCTTA
* * *
73153174 AACCCCAACCCTTAAACCATA
1 AACCCCAACCCCTAAGCCTTA
73153195 AACC
1 AACC
73153199 ATAAACCATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.15
Consensus pattern (21 bp):
AACCCCAACCCCTAAGCCTTA
Found at i:73153188 original size:14 final size:15
Alignment explanation
Indices: 73153159--73153191 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
73153149 CTTAACCCCT
*
73153159 AACCCCTAAGCCTTA
1 AACCCCTAACCCTTA
73153174 AACCCC-AACCCTTA
1 AACCCCTAACCCTTA
73153188 AACC
1 AACC
73153192 ATAAACCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.36, C:0.45, G:0.03, T:0.15
Consensus pattern (15 bp):
AACCCCTAACCCTTA
Found at i:73153203 original size:14 final size:14
Alignment explanation
Indices: 73153186--73153246 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
73153176 CCCCAACCCT
73153186 TAAACCATAAACCA
1 TAAACCATAAACCA
*
73153200 TAAACCATAAACTA
1 TAAACCATAAACCA
* *
73153214 TAATCCCTAAACCCA
1 TAAACCATAAA-CCA
* *
73153229 TAATCCATAAACCT
1 TAAACCATAAACCA
73153243 TAAA
1 TAAA
73153247 ACAGTAACTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 27 0.69
15 12 0.31
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:73153400 original size:7 final size:7
Alignment explanation
Indices: 73153388--73153501 Score: 63
Period size: 7 Copynumber: 16.0 Consensus size: 7
73153378 ATTAATTAAT
73153388 CTAAACC
1 CTAAACC
73153395 CTAAACTC
1 CTAAAC-C
* *
73153403 ATAATCC
1 CTAAACC
73153410 CTAAACC
1 CTAAACC
*
73153417 TTAAACC
1 CTAAACC
* *
73153424 GTAAATC
1 CTAAACC
*
73153431 CTAAAAC
1 CTAAACC
*
73153438 ATAAACC
1 CTAAACC
73153445 CTAAACC
1 CTAAACC
* *
73153452 ATGAACC
1 CTAAACC
73153459 ACT-AACC
1 -CTAAACC
73153466 ACT-AACC
1 -CTAAACC
*
73153473 CTTAACC
1 CTAAACC
73153480 C-ATAACAC
1 CTA-AAC-C
73153488 CTAAACC
1 CTAAACC
*
73153495 TTAAACC
1 CTAAACC
73153502 ACAACCCTTA
Statistics
Matches: 84, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
6 2 0.02
7 70 0.83
8 11 0.13
9 1 0.01
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:73153465 original size:21 final size:21
Alignment explanation
Indices: 73153441--73153516 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
73153431 CTAAAACATA
*
73153441 AACCCTAAACCATGAACCACT
1 AACCCTAAACCATAAACCACT
* * *
73153462 AACCACTAACCCTTAACCCA-T
1 AACC-CTAAACCATAAACCACT
*
73153483 AACACCTAAACCTTAAACCAC-
1 AAC-CCTAAACCATAAACCACT
73153504 AACCCTTAAACCA
1 AACCC-TAAACCA
73153517 CCGTTAAACC
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
20 2 0.05
21 30 0.68
22 12 0.27
ACGTcount: A:0.43, C:0.39, G:0.01, T:0.16
Consensus pattern (21 bp):
AACCCTAAACCATAAACCACT
Found at i:73153645 original size:324 final size:307
Alignment explanation
Indices: 73152972--73153699 Score: 847
Period size: 324 Copynumber: 2.3 Consensus size: 307
73152962 TTACATAATT
* * * *
73152972 TAAACTATAATTATAATT--TTAATATATTAAAATTAATATTATCTCTTTTACAATTATATAATA
1 TAAACTATAATGATAATTAATCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAGA
* * * * * **
73153035 AATTATTTAAT-ATATAAATT-ACAAAACATTAATTAATCTAAGCCTTAAACCCCTAACCCCTGC
66 AAATATTT-ATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAA
* * * * * * *
73153098 CCCCTAAACCTTAAATCATAAACATAATCTCTAAACCCTAAAAACCTAACACTTAACCCCTAACC
130 ACCCTAAACCGTAAATCATAAACATAAACCCTAAACCATAAAAACCTAACACTTAACCCATAACA
* * *
73153163 CCTAAGCCTTAAACCCCAACCCTTAAACCATAAACCATAAACCATAAACTATAATCCCTAAACCC
195 CCTAAACCTTAAACCACAACCCTTAAACC---AACCAT-----ATAAACCATAATCCCTAAACCC
* *
73153228 ATAATCCATAAACCTTAAAACAGTAACTCATACACTTTAAACCTTAAACCAAACCC
252 ATAATCCATAAACCTTAAAACAGTAACTCATAAACATTAAACCTTAAACCAAACCC
*
73153284 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATATTATCTCTTTTATAATTATATAAG
1 TAAACTATAATGATAATTAA-TCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAG
* *
73153349 AAAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACTCATAATCCCTAA
65 AAAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAA
* * *
73153414 ACCTTAAACCGTAAATCCTAAAACATAAACCCTAAACCATGAACCACTAACCACTAACCCTTAAC
130 ACCCTAAACCGTAAATCAT-AAACATAAACCCTAAACCAT-AA--A--AA-C-CTAACACTTAAC
*
73153479 CCATAACACCTAAACCTTAAACCACAACCCTTAAACC-ACCGT-TAAACCATAATCCCTAAACCC
187 CCATAACACCTAAACCTTAAACCACAACCCTTAAACCAACCATATAAACCATAATCCCTAAACCC
* *
73153542 ATAATCCGTTAAACCTTAAAATAGTAACTCATAAACATTAAACCCTTAACCATATACCGTAAACC
252 ATAATCC-ATAAACCTTAAAACAGTAACTCATAAACATTAAA-CCTT----A-A-ACC--AAACC
73153607 C
307 C
*
73153608 TAAACTATAATGATAATTAACTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
1 TAAACTATAATGATAATTAA-TCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAG
*
73153673 AAAATATTTAACATATAAATTAAAAAA
65 AAAATATTTATCATATAAATTAAAAAA
73153700 CAATTAGTCA
Statistics
Matches: 357, Mismatches: 36, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
312 17 0.05
314 29 0.08
315 87 0.24
316 54 0.15
317 17 0.05
318 2 0.01
320 6 0.02
321 1 0.00
322 5 0.01
323 1 0.00
324 138 0.39
ACGTcount: A:0.46, C:0.23, G:0.02, T:0.29
Consensus pattern (307 bp):
TAAACTATAATGATAATTAATCAATATTTTAAAATTAATATTATCTCTTTTACAATTATATAAGA
AAATATTTATCATATAAATTAAAAAAACATTAATTAATCTAAACCCTAAACCCATAACCCCTAAA
CCCTAAACCGTAAATCATAAACATAAACCCTAAACCATAAAAACCTAACACTTAACCCATAACAC
CTAAACCTTAAACCACAACCCTTAAACCAACCATATAAACCATAATCCCTAAACCCATAATCCAT
AAACCTTAAAACAGTAACTCATAAACATTAAACCTTAAACCAAACCC
Found at i:73153915 original size:40 final size:40
Alignment explanation
Indices: 73153772--73153920 Score: 140
Period size: 41 Copynumber: 3.7 Consensus size: 40
73153762 CATTTTTTGT
* * *
73153772 GGCGTTTTTCAAAAAAACGCCGCTAAAGATTGAGCATTAGC
1 GGCGTTTTTCAAAAAAGCGCCGCTAAA-ATTGACCTTTAGC
* ** * *
73153813 GGCGTTTTTCAAAAAAGCGTCGCTAAAGGTGTACCTATAGT
1 GGCGTTTTTCAAAAAAGCGCCGCTAAAATTG-ACCTTTAGC
* * *
73153854 GGCCTTTCTT-AAAAAAGCGCCGCTAATACTTGATCTTTAGC
1 GGCGTTT-TTCAAAAAAGCGCCGCTAA-AATTGACCTTTAGC
*
73153895 GGCGTTTTT-GAAAAAGCGCCGCTAAA
1 GGCGTTTTTCAAAAAAGCGCCGCTAAA
73153921 GCCACCAAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 19 0.22
41 63 0.72
42 5 0.06
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAAGCGCCGCTAAAATTGACCTTTAGC
Found at i:73154019 original size:132 final size:133
Alignment explanation
Indices: 73153865--73154106 Score: 389
Period size: 132 Copynumber: 1.8 Consensus size: 133
73153855 GCCTTTCTTA
*
73153865 AAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAAAGCCACCAAA
1 AAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTT-AAAAAGCACCGCTAAAGCCACCAAA
*
73153930 AGCTCAATAC-AAACGATGGAGTTTTGCAAAATT-TTTTGCAGCGTCGCGTACATATAGCGGCTT
65 AGCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTTGCAGCGTCGCGTACATATAGCGGCTT
73153993 TTTT
130 TTTT
* **
73153997 AAAAAGTGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAAAGCACCGCTAAAGCCATTAAAA
1 AAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAAAGCACCGCTAAAGCCACCAAAA
* * *
73154062 GCTCAATACAAAATGGCGGAGTTTTGCAAAATTCTTTTGCGGCGT
66 GCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTTGCAGCGT
73154107 TTTTCAAAAA
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
131 32 0.32
132 58 0.58
133 10 0.10
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (133 bp):
AAAAAGCGCCGCTAATACTTGATCTTTAGCGGCGTTTTTAAAAAGCACCGCTAAAGCCACCAAAA
GCTCAATACAAAACGACGGAGTTTTGCAAAATTCTTTTGCAGCGTCGCGTACATATAGCGGCTTT
TTT
Found at i:73171396 original size:2 final size:2
Alignment explanation
Indices: 73171389--73171413 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
73171379 CTTTCTTCTT
73171389 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
73171414 ATGTATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:73175461 original size:12 final size:12
Alignment explanation
Indices: 73175444--73175472 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
73175434 TTTAAATTAG
73175444 TTAATCTTATGT
1 TTAATCTTATGT
73175456 TTAATCTTATGT
1 TTAATCTTATGT
73175468 TTAAT
1 TTAAT
73175473 GAACGAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (12 bp):
TTAATCTTATGT
Found at i:73178737 original size:11 final size:12
Alignment explanation
Indices: 73178711--73178740 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73178701 TCGCCCATAT
73178711 TAATTTTTATAC
1 TAATTTTTATAC
73178723 TAATTTTTATA-
1 TAATTTTTATAC
73178734 TAATTTT
1 TAATTTT
73178741 AAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (12 bp):
TAATTTTTATAC
Found at i:73178765 original size:18 final size:18
Alignment explanation
Indices: 73178742--73178781 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
73178732 TATAATTTTA
*
73178742 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
73178760 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
73178778 AAAA
1 AAAA
73178782 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:73183600 original size:28 final size:28
Alignment explanation
Indices: 73183547--73183630 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
73183537 CACTTTGTGC
73183547 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
73183576 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
73183604 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
73183631 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:73183642 original size:23 final size:24
Alignment explanation
Indices: 73183551--73183644 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
73183541 TTGTGCTATT
73183551 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
73183578 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
73183608 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
73183631 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
73183645 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:73183864 original size:23 final size:23
Alignment explanation
Indices: 73183834--73183920 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 23
73183824 GCTTTACTGA
*
73183834 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
73183857 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTATGTGTCGTATT
* **
73183878 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTATGTGTCGTATT
73183899 TCAGGCA-CTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
73183921 CTGATCAGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 9 0.17
21 23 0.44
22 2 0.04
23 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.36
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:73188990 original size:19 final size:19
Alignment explanation
Indices: 73188966--73189012 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
73188956 AAAGGATGCG
73188966 AGAAAAAGAAAT-CAAGAGA
1 AGAAAAAGAAATACAAG-GA
*
73188985 AG-AAAA-AAATACATGGA
1 AGAAAAAGAAATACAAGGA
73189002 AGAAAAAGAAA
1 AGAAAAAGAAA
73189013 AGGAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 8 0.33
18 11 0.46
19 5 0.21
ACGTcount: A:0.70, C:0.04, G:0.19, T:0.06
Consensus pattern (19 bp):
AGAAAAAGAAATACAAGGA
Found at i:73189105 original size:18 final size:20
Alignment explanation
Indices: 73189082--73189129 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
73189072 TCATGTGAGC
73189082 AAGAAAAGAAAG-TTGAA-A
1 AAGAAAAGAAAGATTGAAGA
*
73189100 AAG-AAAGAGAGATTGAAGA
1 AAGAAAAGAAAGATTGAAGA
73189119 AAGAAAAGAAA
1 AAGAAAAGAAA
73189130 ATGTCCAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 7 0.28
18 8 0.32
19 4 0.16
20 6 0.24
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.08
Consensus pattern (20 bp):
AAGAAAAGAAAGATTGAAGA
Found at i:73205188 original size:21 final size:22
Alignment explanation
Indices: 73205141--73205182 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
73205131 AAGATGAAGA
73205141 TAAAAAACTAAACCCCAAAAATC
1 TAAAAAAC-AAACCCCAAAAATC
*
73205164 TAAAAAA-AAACCCTAAAAA
1 TAAAAAACAAACCCCAAAAA
73205183 CGTAAACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.67, C:0.21, G:0.00, T:0.12
Consensus pattern (22 bp):
TAAAAAACAAACCCCAAAAATC
Found at i:73205687 original size:18 final size:18
Alignment explanation
Indices: 73205664--73205729 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 18
73205654 GGTCTTATAT
73205664 TAATTTTATAATTAATTA
1 TAATTTTATAATTAATTA
73205682 TAATTTCT-TAATT--TTA
1 TAATTT-TATAATTAATTA
*
73205698 TAACCATTTATAACTTATATT-
1 TAA--TTTTATAA-TTA-ATTA
73205719 TAATTTTATAA
1 TAATTTTATAA
73205730 ATACTTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 15
0.69 0.04 0.27
Matches are distributed among these distances:
16 6 0.16
17 1 0.03
18 16 0.42
19 10 0.26
21 3 0.08
22 2 0.05
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (18 bp):
TAATTTTATAATTAATTA
Done.