Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 217 of 362
Found at i:73205708 original size:26 final size:29
Alignment explanation
Indices: 73205657--73205729 Score: 82
Period size: 26 Copynumber: 2.7 Consensus size: 29
73205647 CTAAAATGGT
**
73205657 CTTATA-TTAATTTTATAATTAATTATAA
1 CTTATACTTAATTTTATAACCAATTATAA
*
73205685 -TT-T-CTTAATTTTATAACCATTTATAA
1 CTTATACTTAATTTTATAACCAATTATAA
*
73205711 CTTATATTTAATTTTATAA
1 CTTATACTTAATTTTATAA
73205730 ATACTTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
26 20 0.54
27 4 0.11
28 1 0.03
29 12 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
CTTATACTTAATTTTATAACCAATTATAA
Found at i:73207202 original size:3 final size:3
Alignment explanation
Indices: 73207196--73207227 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
73207186 CAACAACAAC
73207196 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
73207228 AAGAAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:73209208 original size:25 final size:22
Alignment explanation
Indices: 73209197--73209238 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
73209187 TATAGTGTAA
73209197 AAAATACATACATAATATAATT
1 AAAATACATACATAATATAATT
*
73209219 AAAATATATACATAATATAA
1 AAAATACATACATAATATAA
73209239 CATGTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATACATACATAATATAATT
Found at i:73209281 original size:25 final size:25
Alignment explanation
Indices: 73209175--73209383 Score: 116
Period size: 25 Copynumber: 8.6 Consensus size: 25
73209165 AAAAAAATAT
* * * *
73209175 ATATGTACATAATATAGTGTAAAAA
1 ATATATACATAATATAGTATTAAAG
*
73209200 ATACATACATAATATA--ATTAAA-
1 ATATATACATAATATAGTATTAAAG
** *
73209222 ATATATACATAATATAACATGTAGAAAAA
1 ATATATACATAATAT---A-GTATTAAAG
* *
73209251 AAATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73209276 ATATATACATAAAATAGTA-TAATAT
1 ATATATACATAATATAGTATTAA-AG
* * *
73209301 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
73209325 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
73209347 AATATATATATAATATAATATTAAA-
1 -ATATATACATAATATAGTATTAAAG
73209372 A-ATATA-ATAATA
1 ATATATACATAATA
73209384 ACAAAAAAAA
Statistics
Matches: 142, Mismatches: 28, Indels: 31
0.71 0.14 0.15
Matches are distributed among these distances:
21 1 0.01
22 22 0.15
23 23 0.16
24 18 0.13
25 55 0.39
26 6 0.04
28 4 0.03
29 13 0.09
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:73209707 original size:16 final size:16
Alignment explanation
Indices: 73209669--73209707 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
73209659 CTCCAAAAAA
*
73209669 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
73209685 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
73209701 AATAACT
1 AAAAACT
73209708 CTCCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:73209897 original size:21 final size:21
Alignment explanation
Indices: 73209872--73209915 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
73209862 GTGGTGGTGG
73209872 AGCAAGTGTGGCTAATGGAGT
1 AGCAAGTGTGGCTAATGGAGT
*
73209893 AGCAAGTGTGGCTAGTGGAGT
1 AGCAAGTGTGGCTAATGGAGT
73209914 AG
1 AG
73209916 GTGGTGGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.41, T:0.23
Consensus pattern (21 bp):
AGCAAGTGTGGCTAATGGAGT
Found at i:73209927 original size:30 final size:30
Alignment explanation
Indices: 73209893--73209982 Score: 153
Period size: 30 Copynumber: 3.0 Consensus size: 30
73209883 CTAATGGAGT
*
73209893 AGCAAGTGTGGCTAGTGGAGTAGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
73209923 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
* *
73209953 TGCAAGTGTGACTAGTGGAGTTGGTGGTGG
1 AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
73209983 CAAAGGCTAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.18, C:0.07, G:0.49, T:0.27
Consensus pattern (30 bp):
AGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
Found at i:73210876 original size:91 final size:89
Alignment explanation
Indices: 73210690--73211082 Score: 337
Period size: 91 Copynumber: 4.4 Consensus size: 89
73210680 ACGTGAGCCA
* * * * *
73210690 AGGCTCAACTCACTTCTCGCAATATAAGTTGA-TTTTT--AAAACA-AAATTTGTAAAACAGAT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAAA-ATAAA-TTGAAAAAAAAATA
* ** * *
73210750 TTTGAAAATACCTCAGTATGTGACCCG
64 ATTGAAAATACCTCAGCGTGT-ATCTG
* *
73210777 AGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGTATAAATTGAAAAAAAAATCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAA-AATAAATTGAAAAAAAAAT-A
*
73210841 ATTGAAAATACCTCGGCGTGTAATCTG
64 ATTGAAAATACCTCAGCGTGT-ATCTG
* * *
73210868 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGACAAACATAAATTG---AAAAGA-A
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-CAAAAATAAATTGAAAAAAAAATA
* *
73210929 ATTGAAAATATCTCAGCGTGT-CCTG
64 ATTGAAAATACCTCAGCGTGTATCTG
* * * * *
73210954 AGGCTGAACTCACCTCTCGTAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAAAA-TAAA-TTGAAAAA-AAAAT
*
73211019 --TTGAAAATACCTCAGCGTGTGAGTC-A
63 AATTGAAAATACCTCAGCGTGT-A-TCTG
* *
73211045 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
73211083 TTGAAAGACA
Statistics
Matches: 251, Mismatches: 36, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
84 4 0.02
85 10 0.04
86 35 0.14
87 34 0.14
88 20 0.08
89 35 0.14
90 10 0.04
91 84 0.33
92 1 0.00
93 14 0.06
94 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (89 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAAAATAAATTGAAAAAAAAATAAT
TGAAAATACCTCAGCGTGTATCTG
Found at i:73211025 original size:13 final size:14
Alignment explanation
Indices: 73210993--73211025 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73210983 TGATTTTTTG
73210993 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
73211007 GAAAAACAGAATTT
1 GAAAAACAAAATTT
73211021 GAAAA
1 GAAAA
73211026 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:73211028 original size:177 final size:174
Alignment explanation
Indices: 73210663--73211103 Score: 473
Period size: 177 Copynumber: 2.5 Consensus size: 174
73210653 AAAAACATAA
* ** ** *
73210663 ATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATAAGTTGA--TTTT
1 ATTGAAAATACCTCAGCGTGTGAATCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
** *
73210726 T-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTCAGTATGTGACCCGAGGCTCAACTCAC
66 TGAAAACAAAA-TTG--AAA-AGAAATTGAAAATACCTCAG-ACGTGACCCGAGGCTCAACTCAC
* *
73210790 CTCTCGTAATATGAGTTGATTTTTGCAAAGTATAAATTGAAAAAAAAAT
126 CTCTCGTAATATGAGTTGATTTTTGCAAAGAAAAAATTGAAAAAAAAAT
* *
73210839 CAATTGAAAATACCTCGGCGTGT-AATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
1 --ATTGAAAATACCTCAGCGTGTGAATC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
* * * *
73210903 TTTTGACAAACATAAATTGAAAAGAAATTGAAAATATCTCAG-CGTGTCCTGAGGCTGAACTCAC
63 TTTTGA-AAACA-AAATTGAAAAGAAATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCAC
* *
73210967 CTCTCGTAATATGAGTTGATTTTTTGGAAA-AACAAAATTTGAAAAACAGAAT
126 CTCTCGTAATATGAGTTGA-TTTTTGCAAAGAA-AAAA-TTGAAAAA-AAAAT
* * * *
73211019 -TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 ATTGAAAATACCTCAGCGTGTGAATCAAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTT
73211083 TTGAAAGACAGAAATTGAAAA
65 TTGAAA-ACA-AAATTGAAAA
73211104 ACCTCAGCGT
Statistics
Matches: 224, Mismatches: 26, Indels: 26
0.81 0.09 0.09
Matches are distributed among these distances:
177 90 0.40
178 85 0.38
179 25 0.11
180 12 0.05
181 1 0.00
182 8 0.04
183 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (174 bp):
ATTGAAAATACCTCAGCGTGTGAATCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
TGAAAACAAAATTGAAAAGAAATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACCTCTC
GTAATATGAGTTGATTTTTGCAAAGAAAAAATTGAAAAAAAAAT
Found at i:73211339 original size:73 final size:73
Alignment explanation
Indices: 73211004--73211931 Score: 1246
Period size: 72 Copynumber: 13.0 Consensus size: 73
73210994 AAAAACAAAA
* * * ** *
73211004 TTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
1 TTTG-AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATA
*
73211069 TGAGCTGATTTTT
63 TGAGTTGA--TTT
*
73211082 TTTGAAAGACAGAAATTGAAAA-ACCTC-A-GCGTCTTGAGG-TCAACTCACCTCTCGCAATATG
1 TTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211143 AGTTGA-TT
65 AGTTGATTT
* *
73211151 TTTGAAAACA-AAATTGAAATTACCTCAAC--GTCTTGAGG-TCAACTCACCTATCGCAATATGA
1 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73211212 GTTGA-TT
66 GTTGATTT
*
73211219 TTTGAAAACA-AAATTG-AAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73211282 GTTGATTT
66 GTTGATTT
*
73211290 TTTTAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73211355 GTT-ATTT
66 GTTGATTT
*
73211362 TTTGACAAACA-AAA-T-AAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211422 AGTTGATTT
65 AGTTGATTT
73211431 TTTGAAAACA-AAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCA-CTCTCGCAATATGA
1 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73211493 G-TGATTTT
66 GTTGA-TTT
*
73211501 TTTAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
73211566 GTTGA--T
66 GTTGATTT
* *
73211572 TTTGACAAA-AAAAATTGAAATTACCTCAAC--GTC-TGAGG-TCAACTCA-C-CTCGCAATATG
1 TTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211630 AGTTGATTT
65 AGTTGATTT
*
73211639 TTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCACCTCTCGCAATATG
1 TTTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211703 AG-TGATTT
65 AGTTGATTT
* *
73211711 TTTAAAAGACAGAAATTGAAAATACCTCAACGTATCTT-AGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211775 AGTTGA-TT
65 AGTTGATTT
* * * * * *
73211783 TTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATG
1 TTTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211848 AGTTGATTT
65 AGTTGATTT
*
73211857 TTTGAAAA-ATGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCACAATATG
1 TTTGAAAACA-GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
73211920 AGTTGATTT
65 AGTTGATTT
73211929 TTT
1 TTT
73211932 AGAACTAAAT
Statistics
Matches: 772, Mismatches: 40, Indels: 82
0.86 0.04 0.09
Matches are distributed among these distances:
65 17 0.02
66 1 0.00
67 36 0.05
68 133 0.17
69 36 0.05
70 77 0.10
71 94 0.12
72 180 0.23
73 160 0.21
74 10 0.01
75 3 0.00
77 8 0.01
78 17 0.02
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (73 bp):
TTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:73211387 original size:210 final size:215
Alignment explanation
Indices: 73211004--73212014 Score: 1377
Period size: 211 Copynumber: 4.7 Consensus size: 215
73210994 AAAAACAAAA
* * * ** *
73211004 TTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
1 TTTG-AAAACA-AAATTGAAAATACCTCAACGTGT--CTTGAGG-TCAACTCACCTCTCGCAATA
* *
73211069 TGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAA-ACCTC-A-GCGTCTTGAGG-TCAACTCAC
61 TGAG-TGA-TTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
73211130 CTCTCGCAATATGAGTTGATTTTTGA-AAACAAAATTGAAATTACCTCAACGTCTTGAGG-TCAA
124 CTCTCGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAACGTCTTGAGGCTCAA
73211193 CTCACCTATCGCAATATGAGTTGA-TT
189 CTCACCTATCGCAATATGAGTTGATTT
73211219 TTTGAAAACAAAATTG-AAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTTGAAAACAAAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCACCTCTCGCAATATGAG
73211283 TTGATTTTTTT-AAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
65 -TGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
73211346 GCAATATGAGTT-ATTTTTTGACAAACAAAA-T-AAAATACCTCAGCGTCTTGAGGCTCAACTCA
129 GCAATATGAGTTGA-TTTTTGACAAACAAAATTGAAATTACCTCAACGTCTTGAGGCTCAACTCA
*
73211408 CCTCTCGCAATATGAGTTGATTT
193 CCTATCGCAATATGAGTTGATTT
73211431 TTTGAAAACAAAATTGAAAATACCTCAACGTGTCTTGAGGTCAACTCA-CTCTCGCAATATGAGT
1 TTTGAAAACAAAATTGAAAATACCTCAACGTGTCTTGAGGTCAACTCACCTCTCGCAATATGAGT
73211495 GATTTTTTTAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
66 GATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
*
73211559 AATATGAGTTGA-TTTTGACAAAAAAAATTGAAATTACCTCAACGTC-TGAGG-TCAACTCACC-
131 AATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAACGTCTTGAGGCTCAACTCACCT
73211620 -TCGCAATATGAGTTGATTT
196 ATCGCAATATGAGTTGATTT
73211639 TTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTCAACTCACCTCTCGCAATATGA
1 TTTG-AAAAC-AAAATTGAAAATACCTCAACGTGTCTTGAGGTCAACTCACCTCTCGCAATATGA
*
73211704 GTGA-TTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTATCTT-AGGCTCAACTCACCTCTC
64 GTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
73211767 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACT
129 GCAATATGAGTTGATTTTTGACAAAC-AAAATTGAAATTACCTCA--ACGTCTTGAGGCTCAACT
73211832 CACCTATCGCAATATGAGTTGATTT
191 CACCTATCGCAATATGAGTTGATTT
*
73211857 TTTGAAAA-ATGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCACAATATG
1 TTTGAAAACA--AAATTGAAAATACCTCAACGTGTCTTGAGG-TCAACTCACCTCTCGCAATATG
* * * * *
73211920 AGTTGATTTTTTAGAACTAAATTAAAAAAATGAAAAATGAAAATACCTCAGCGTGTCCTGAGGCT
63 AG-TGATTTTTT-----T--A--AAAGACA-G-AAATTGAAAATACCTCAACGTGTCTTGAGGCT
* *
73211985 TAACTCACTTCTCGCAATATGAGTTGATTT
116 CAACTCACCTCTCGCAATATGAGTTGATTT
73212015 GAAAAGCAGA
Statistics
Matches: 727, Mismatches: 27, Indels: 68
0.88 0.03 0.08
Matches are distributed among these distances:
207 14 0.02
208 31 0.04
209 13 0.02
210 176 0.24
211 203 0.28
212 82 0.11
213 28 0.04
214 10 0.01
215 10 0.01
216 10 0.01
217 48 0.07
218 34 0.05
219 5 0.01
224 1 0.00
226 1 0.00
228 5 0.01
229 1 0.00
230 22 0.03
231 33 0.05
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (215 bp):
TTTGAAAACAAAATTGAAAATACCTCAACGTGTCTTGAGGTCAACTCACCTCTCGCAATATGAGT
GATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAACGTCTTGAGGCTCAACTCACCT
ATCGCAATATGAGTTGATTT
Found at i:73211968 original size:85 final size:86
Alignment explanation
Indices: 73211861--73212305 Score: 391
Period size: 85 Copynumber: 5.0 Consensus size: 86
73211851 TGATTTTTTG
* * * *
73211861 AAAAATG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTCTCACAATATGAGTT
1 AAAAATGAAAAATGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
73211924 GATTTTTTAGAACTA-AATTAA
66 GATTTTTGAAAAC-AGAATTAA
* *
73211945 AAAAATGAAAAATGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAGTT
1 AAAAATGAAAAATGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
73212010 GA--TTTGAAAAGCAGAATTTGTAA
66 GATTTTTGAAAA-CAGAA--T-TAA
*
73212033 GGCAAAATTGAAAAAAAGAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCA
1 ---AAAAATG----AAA-AA-TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
73212097 ATATGAGTTGATTTTTG-AAACAGAATTAAA
57 ATATGAGTTGATTTTTGAAAACAGAATT-AA
*
73212127 ACAAAATTGAAAACA-GAAATAAAATACCTC-GCGTG-CCCGAGGCTCAACTCACCTCTCGCAA-
1 A-AAAA-TGAAAA-ATG----AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
*
73212188 AT-AGTTGA-TTTTGAAAACATAAATT-A
59 ATGAGTTGATTTTTGAAAACA-GAATTAA
* *
73212214 AAAAATGGAAATTG-AAATACCTCAGCGTGTGACCTGAGGC-CAACTCACCTCTCGCAATAATGA
1 AAAAATGAAAAATGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAAT-ATGA
* *
73212277 GTTGATTTTTTGAAAGATAGAAATAA
63 GTTGA-TTTTTGAAA-ACAGAATTAA
73212303 AAA
1 AAA
73212306 CATCAAAATA
Statistics
Matches: 301, Mismatches: 20, Indels: 75
0.76 0.05 0.19
Matches are distributed among these distances:
80 9 0.03
81 5 0.02
83 17 0.06
84 21 0.07
85 46 0.15
86 27 0.09
87 9 0.03
88 26 0.09
89 16 0.05
90 30 0.10
91 17 0.06
92 3 0.01
93 3 0.01
94 3 0.01
95 3 0.01
96 41 0.14
97 21 0.07
98 4 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (86 bp):
AAAAATGAAAAATGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAACAGAATTAA
Found at i:73212105 original size:96 final size:92
Alignment explanation
Indices: 73211954--73212216 Score: 340
Period size: 96 Copynumber: 2.8 Consensus size: 92
73211944 AAAAAATGAA
* *
73211954 AAATGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAGTTGA-TTTGAA
1 AAATGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAA
**
73212018 AAGCAGAATTTGTAAGGCAAAATTGAAAAAAAG
65 AA-CAGAA--T-TAAAACAAAATTG-AAAAAAG
*
73212051 AATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A
1 AAATGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAA
*
73212115 AACAGAATTAAAACAAAATTGAAAACAG
65 AACAGAATTAAAACAAAATTGAAAAAAG
*
73212143 AAAT-AAAATACCTC-GCGTGCCCGAGGCTCAACTCACCTCTCGCAA-AT-AGTTGATTTTGAAA
1 AAATGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA
*
73212204 ACATAAATTAAAA
66 ACA-GAATTAAAA
73212217 AATGGAAATT
Statistics
Matches: 153, Mismatches: 9, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
87 5 0.03
88 11 0.07
89 10 0.07
90 30 0.20
91 10 0.07
92 9 0.06
93 11 0.07
94 1 0.01
96 39 0.25
97 23 0.15
98 4 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (92 bp):
AAATGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA
ACAGAATTAAAACAAAATTGAAAAAAG
Found at i:73224213 original size:25 final size:23
Alignment explanation
Indices: 73224161--73224215 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
73224151 TATAAATAGT
73224161 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
73224184 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
73224209 AATAGTG
1 AATAGTG
73224216 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:73224317 original size:25 final size:25
Alignment explanation
Indices: 73224277--73224489 Score: 125
Period size: 25 Copynumber: 8.4 Consensus size: 25
73224267 ATAGATATAA
*
73224277 AAAAAATATATGTACATAATATAGTGT
1 AAAAAATATA--TACATAATATAGTAT
*
73224304 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* *
73224327 -TAAAATATATACATAATATAACATGTAGAA
1 AAAAAATATATACATAATAT---A-GT--AT
*
73224357 AAAAAATATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
73224382 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * * *
73224407 AATATATATATACGTAATATAGAAT
1 AAAAAATATATACATAATATAGTAT
** * *
73224432 -TTAGA-ATATACCTAATATA-T-T
1 AAAAAATATATACATAATATAGTAT
* *
73224453 AAAAGAATATATATATAATATAATATT
1 AAAA-AATATATACATAATATAGTA-T
73224480 AAAAAATATA
1 AAAAAATATA
73224490 ATAATAACAA
Statistics
Matches: 144, Mismatches: 27, Indels: 31
0.71 0.13 0.15
Matches are distributed among these distances:
21 1 0.01
22 18 0.12
23 15 0.10
24 15 0.10
25 54 0.38
26 6 0.04
27 16 0.11
28 1 0.01
30 1 0.01
31 17 0.12
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:73225016 original size:30 final size:30
Alignment explanation
Indices: 73224976--73225074 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
73224966 TAGGTACAAG
*
73224976 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
73225006 AGGTGATGGAGCAAGTGTGGCTAGTAGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
73225036 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
73225066 TGGTGGTGG
1 TGGTGGTGG
73225075 CAAAGGCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.19, C:0.06, G:0.48, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:73225064 original size:18 final size:18
Alignment explanation
Indices: 73224981--73225064 Score: 57
Period size: 18 Copynumber: 5.3 Consensus size: 18
73224971 ACAAGTGGTG
73224981 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
* *
73224999 ATGGAG-TAG-GT-G--A
1 GTGGAGCAAGTGTGGCTA
73225012 -TGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
73225029 GT--AG--AGT-TGG-TG
1 GTGGAGCAAGTGTGGCTA
73225041 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
73225059 GTGGAG
1 GTGGAG
73225065 TTGGTGGTGG
Statistics
Matches: 49, Mismatches: 5, Indels: 24
0.63 0.06 0.31
Matches are distributed among these distances:
12 8 0.16
13 6 0.12
14 7 0.14
15 2 0.04
16 7 0.14
17 6 0.12
18 13 0.27
ACGTcount: A:0.23, C:0.07, G:0.46, T:0.24
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:73226710 original size:18 final size:18
Alignment explanation
Indices: 73226687--73226725 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73226677 TCTTTTACTG
*
73226687 TTTATTTTATTATTTATA
1 TTTATTTTATTATTCATA
*
73226705 TTTATTTTATTGTTCATA
1 TTTATTTTATTATTCATA
73226723 TTT
1 TTT
73226726 CAGATTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (18 bp):
TTTATTTTATTATTCATA
Found at i:73226800 original size:13 final size:14
Alignment explanation
Indices: 73226777--73226805 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
73226767 TTCAAATCTA
73226777 TTATTTATATTTTT
1 TTATTTATATTTTT
73226791 TTATTT-TATTTTT
1 TTATTTATATTTTT
73226804 TT
1 TT
73226806 TAGAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (14 bp):
TTATTTATATTTTT
Found at i:73228742 original size:13 final size:13
Alignment explanation
Indices: 73228700--73228749 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
73228690 ACAGTTAAAC
73228700 AATTTATAAAGAA
1 AATTTATAAAGAA
* *
73228713 AATTTTTTCAAAAAA
1 AA-TTTAT-AAAGAA
73228728 AATTTATAAAGAA
1 AATTTATAAAGAA
*
73228741 AATTGATAA
1 AATTTATAA
73228750 CATGATACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 15 0.50
14 8 0.27
15 7 0.23
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (13 bp):
AATTTATAAAGAA
Found at i:73229604 original size:26 final size:24
Alignment explanation
Indices: 73229575--73229622 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
73229565 TAAATATTTT
*
73229575 TTTTAAAATATAATAAATCAAATACA
1 TTTTAAAAAATAA-AAA-CAAATACA
73229601 TTTTAAAAAATAAAAACAAATA
1 TTTTAAAAAATAAAAACAAATA
73229623 TTAAAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTTAAAAAATAAAAACAAATACA
Found at i:73229646 original size:23 final size:22
Alignment explanation
Indices: 73229608--73229651 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
73229598 ACATTTTAAA
73229608 AAATAAAAACAAATATTAAAAC
1 AAATAAAAACAAATATTAAAAC
73229630 AAATAAAAA-AATGATATTAAAA
1 AAATAAAAACAA--ATATTAAAA
73229652 TAATTCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATAAAAACAAATATTAAAAC
Found at i:73230506 original size:5 final size:5
Alignment explanation
Indices: 73230496--73230529 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
73230486 ACCTGTCTGT
* *
73230496 CACTG CACTG CACTG CACAG CACAG CACTG CACT
1 CACTG CACTG CACTG CACTG CACTG CACTG CACT
73230530 AGACTCCGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.26, C:0.41, G:0.18, T:0.15
Consensus pattern (5 bp):
CACTG
Found at i:73231932 original size:35 final size:35
Alignment explanation
Indices: 73231893--73231968 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
73231883 GATTACAAGA
**
73231893 AAAATTACTTAAATAAAATATCACTAAATTTATAT
1 AAAATTACCCAAATAAAATATCACTAAATTTATAT
73231928 AAAATTACCCAAATAAAATATCACTAAATTTATAT
1 AAAATTACCCAAATAAAATATCACTAAATTTATAT
*
73231963 AGAATT
1 AAAATT
73231969 TTCCCTTAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.54, C:0.11, G:0.01, T:0.34
Consensus pattern (35 bp):
AAAATTACCCAAATAAAATATCACTAAATTTATAT
Found at i:73233842 original size:17 final size:17
Alignment explanation
Indices: 73233817--73233855 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
73233807 TTTGAAAACT
*
73233817 TTTTCAAAAAAAATA-A
1 TTTTAAAAAAAAATATA
*
73233833 TTTTAAAAAATAATATA
1 TTTTAAAAAAAAATATA
73233850 TTTTAA
1 TTTTAA
73233856 TATTACAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTTAAAAAAAAATATA
Found at i:73234015 original size:19 final size:19
Alignment explanation
Indices: 73233980--73234037 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
73233970 TTTATTAAAA
*
73233980 TATAAATA-TTAGAATTTT
1 TATAAATATTTTGAATTTT
73233998 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
73234017 GA-AAATTATTTTGAAATTTT
1 TATAAA-TATTTTG-AATTTT
73234037 T
1 T
73234038 TGTAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 11 0.32
19 17 0.50
20 6 0.18
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:73234016 original size:18 final size:18
Alignment explanation
Indices: 73233980--73234036 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
73233970 TTTATTAAAA
*
73233980 TATAAATA-TTAGAATTTT
1 TATAAATATTTTGAA-TTT
73233998 TATAAATATTTTGAATTT
1 TATAAATATTTTGAATTT
73234016 TGA-AAATTATTTTGAAATTT
1 T-ATAAA-TATTTTG-AATTT
73234036 T
1 T
73234037 TTGTAATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
18 15 0.44
19 13 0.38
20 6 0.18
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:73238029 original size:39 final size:39
Alignment explanation
Indices: 73237983--73238083 Score: 148
Period size: 39 Copynumber: 2.6 Consensus size: 39
73237973 GCTCTAATGA
73237983 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
73238022 GCTTCAGTTAGCCTTCAGGCTTCCTTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* ** *
73238061 GTTTCAACTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
73238084 AGATCACGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:73238801 original size:6 final size:6
Alignment explanation
Indices: 73238768--73238824 Score: 77
Period size: 6 Copynumber: 10.0 Consensus size: 6
73238758 AGTTTTTTTT
73238768 TAAAAA T-AAAA T--AAA TAAACAA -AAAAA TAAAAA TAAAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAA-AA TAAAAA TAAAAA TAAAAA TAAAAA
73238813 TAAAAA TAAAAA
1 TAAAAA TAAAAA
73238825 AGGTAATTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.09
5 7 0.15
6 34 0.72
7 2 0.04
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (6 bp):
TAAAAA
Found at i:73243075 original size:26 final size:26
Alignment explanation
Indices: 73243039--73243142 Score: 154
Period size: 26 Copynumber: 4.0 Consensus size: 26
73243029 ACAAATTGAG
* *
73243039 AATGGGTTAGGTAAATGTTTCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
* *
73243065 AATGAATTAGGTAAATATTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
*
73243091 AATGGGTTAGGTAAATGTTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
*
73243117 AATGGTTTAGGTAAATGTTCCATGAT
1 AATGGATTAGGTAAATGTTCCATGAT
73243143 GGGCATTTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
AATGGATTAGGTAAATGTTCCATGAT
Found at i:73243101 original size:52 final size:52
Alignment explanation
Indices: 73243039--73243142 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
73243029 ACAAATTGAG
*
73243039 AATGGGTTAGGTAAATGTTTCATGATAATGAATTAGGTAAATATTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCATGAT
** *
73243091 AATGGGTTAGGTAAATGTTCCATGATAATGGTTTAGGTAAATGTTCCATGAT
1 AATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCATGAT
73243143 GGGCATTTCA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.34, C:0.07, G:0.23, T:0.37
Consensus pattern (52 bp):
AATGGGTTAGGTAAATGTTCCATGATAATGAATTAGGTAAATATTCCATGAT
Found at i:73246002 original size:26 final size:26
Alignment explanation
Indices: 73245927--73246002 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 26
73245917 TGATGTTGAT
* *
73245927 GATATTTTATAATTATTAATTAGATAA
1 GATATTTTATTATTATTTATTA-ATAA
73245954 -ATATTATT-TTATTAATATT-TTAATAA
1 GATATT-TTATTATT-AT-TTATTAATAA
73245980 GATATTTTATTATTATTTATTAA
1 GATATTTTATTATTATTTATTAA
73246003 GTATAAAAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
25 2 0.05
26 21 0.51
27 17 0.41
28 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (26 bp):
GATATTTTATTATTATTTATTAATAA
Found at i:73246046 original size:28 final size:28
Alignment explanation
Indices: 73246008--73246063 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73245998 ATTAAGTATA
73246008 AAAGGAAGGAAAGATGAAGAATTTTCAT
1 AAAGGAAGGAAAGATGAAGAATTTTCAT
73246036 AAAGGAAGGAAAGATGAAGAATTTTCAT
1 AAAGGAAGGAAAGATGAAGAATTTTCAT
73246064 CATCTTTCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.25, T:0.21
Consensus pattern (28 bp):
AAAGGAAGGAAAGATGAAGAATTTTCAT
Found at i:73248987 original size:35 final size:35
Alignment explanation
Indices: 73248947--73249105 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 35
73248937 GTATGTACAT
73248947 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
73248982 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * ** * *
73249017 ATGTGATGTTTTATTGAGCTTGTATATTCAGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* *
73249052 ATATGATGATATATT-ATACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGA-ACTTGTATATTTGGCCAC
*
73249087 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
73249106 CTTGAGTATT
Statistics
Matches: 98, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
34 1 0.01
35 96 0.98
36 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:73256465 original size:12 final size:12
Alignment explanation
Indices: 73256448--73256484 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
73256438 AGGTAGAAAG
73256448 AGATGCAAGAAC
1 AGATGCAAGAAC
* *
73256460 AGATGCAAGCAT
1 AGATGCAAGAAC
73256472 AGATGCAAGAAC
1 AGATGCAAGAAC
73256484 A
1 A
73256485 ACCAAGATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.24, T:0.11
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:73259146 original size:22 final size:22
Alignment explanation
Indices: 73259121--73259168 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
73259111 CAACAGTACA
73259121 AAAAATAAAAAATAATAAA-AAT
1 AAAAATAAAAAATAA-AAATAAT
* * *
73259143 AAAAGTGAAGAATAAAAATAAT
1 AAAAATAAAAAATAAAAATAAT
73259165 AAAA
1 AAAA
73259169 CAAAGGTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (22 bp):
AAAAATAAAAAATAAAAATAAT
Found at i:73259745 original size:8 final size:9
Alignment explanation
Indices: 73259727--73259769 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
73259717 ATAAATCATC
73259727 AAAAATAAA
1 AAAAATAAA
73259736 AAAAATAAA
1 AAAAATAAA
*
73259745 AAATTAAT-CA
1 AAA--AATAAA
73259755 AAAAATAAA
1 AAAAATAAA
73259764 AAAAAT
1 AAAAAT
73259770 TCATCAATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
8 3 0.10
9 19 0.66
10 4 0.14
11 3 0.10
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.16
Consensus pattern (9 bp):
AAAAATAAA
Found at i:73259757 original size:21 final size:21
Alignment explanation
Indices: 73259733--73259776 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
73259723 CATCAAAAAT
73259733 AAAAAA-AATAAAAAATTAATC
1 AAAAAATAA-AAAAAATTAATC
*
73259754 AAAAAATAAAAAAAATTCATC
1 AAAAAATAAAAAAAATTAATC
73259775 AA
1 AA
73259777 TCAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (21 bp):
AAAAAATAAAAAAAATTAATC
Found at i:73259764 original size:27 final size:29
Alignment explanation
Indices: 73259711--73259769 Score: 93
Period size: 28 Copynumber: 2.0 Consensus size: 29
73259701 GCCTTGAGAC
73259711 TAAAAAATAAATCATCAAAAATAAAAAAAA
1 TAAAAAATAAATCA-CAAAAATAAAAAAAA
*
73259741 TAAAAAATTAATCA-AAAAATAAAAAAAA
1 TAAAAAATAAATCACAAAAATAAAAAAAA
73259769 T
1 T
73259770 TCATCAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 15 0.54
30 13 0.46
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (29 bp):
TAAAAAATAAATCACAAAAATAAAAAAAA
Found at i:73261173 original size:44 final size:45
Alignment explanation
Indices: 73261125--73261233 Score: 132
Period size: 44 Copynumber: 2.4 Consensus size: 45
73261115 AGCTACCAGC
* *
73261125 CTTATCTCCCTGAGGTAGTAAGGGAGCATG-CCGAAGATTGTAG-T
1 CTTATCTCCCTGAGGTAGTAAGGAAGCA-GACCGAAGATTGAAGAT
* * *
73261169 CTTATCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGAT
1 CTTATCTCCCTGAGGTAGTAAGGAAGCAGACCGAAGATTGAAGAT
* *
73261214 CTTATCTCCCTAAGATAGTA
1 CTTATCTCCCTGAGGTAGTA
73261234 GTAGAGTAGA
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.02
44 36 0.65
45 18 0.33
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAGGTAGTAAGGAAGCAGACCGAAGATTGAAGAT
Found at i:73261250 original size:45 final size:43
Alignment explanation
Indices: 73261125--73261250 Score: 110
Period size: 44 Copynumber: 2.8 Consensus size: 43
73261115 AGCTACCAGC
* * * * * *
73261125 CTTATCTCCCTGAGGTAGTAAGGGAGCATGCCGAAGATTGTAGT
1 CTTATCTCCCTAAGATAGTAAGGAAGTA-GACGAAGATTGAAGT
* * *
73261169 CTTATCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGATTGAAGAT
1 CTTATCTCCCTAAGATAGTAAGGAAGTAGAC-GAAGATTGAAG-T
*
73261214 CTTATCTCCCTAAGATAGT-AGTAGAGTAGATCGAAGA
1 CTTATCTCCCTAAGATAGTAAGGA-AGTAGA-CGAAGA
73261251 CGGCGAATCT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
43 2 0.03
44 38 0.55
45 28 0.41
46 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTAAGATAGTAAGGAAGTAGACGAAGATTGAAGT
Found at i:73261350 original size:178 final size:178
Alignment explanation
Indices: 73261029--73261810 Score: 941
Period size: 178 Copynumber: 4.4 Consensus size: 178
73261019 CATCGGTGAG
* * ** *
73261029 TTGAAAATCTTATCTCCCTAAG-TAGTAGTGGAGTAGATCGAAGATGGAAAATCTTATCTTTCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
* * * * * * * **
73261093 AGGTAGCAGAGAAGCAGATTTTAGCTACCAGCCTTATCTCCCTGAGGTAGTAAGGGAGCATGCCG
66 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
* *
73261158 AAGATTGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGA
131 AAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
*
73261206 TTGAAGATCTTATCTCCCTAAGATAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
* *
73261271 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTT-TGCTCTTTGAGGTAGTAAGAGAGCAGGTT
66 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTAT-CTCTCTGAGGTAGCAAGAGAGCAGGTT
** *
73261335 GAAGATTGTAGTCTTATCTTTTTGAGGTAGCAAGGAAGCAGACCGAAGA
130 GAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* * ** * ** * *
73261384 TTGTAGATCTTATCTCCCTGAGATAGCGGCGGAACAGATCGAAGACAGTGAATCTTATCTTTCC-
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATC-TTCCT
* * * * *
73261448 GAAGTAGTAGGGGAGAAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGAT
65 GAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* * * * *
73261513 GAAGATTGTAGTTTTATCTTTCTAAGGTAGCAA-GAGAGCAGATTG-AGG
130 GAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGA-AGCAGACTGAAGA
* * * * *
73261561 TTTATAAATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-T-CT
1 TTGA-AGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCT
* * * *
73261623 CGAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTATCTTTCTGATGTAGCAAGAGAGCAGGT
65 -GAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
* * *
73261688 TGAAGATTGTAGTCTTATTTTCCTGAGGTAGTAAGGAAGCAAACTGAAGA
129 TGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* * * * *
73261738 TTGTAGATCTTATCTTCCTAAGATAGCAGTGGAGTAGATCGAAGGCGACGAATCTTATCTTCCTG
1 TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
73261803 AGGTAGCA
66 AGGTAGCA
73261811 AAGAAACAGA
Statistics
Matches: 513, Mismatches: 79, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
174 1 0.00
175 1 0.00
176 108 0.21
177 94 0.18
178 302 0.59
179 7 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (178 bp):
TTGAAGATCTTATCTCCCTAAGATAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCTTCCTG
AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
AAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
Found at i:73261716 original size:88 final size:88
Alignment explanation
Indices: 73261436--73261718 Score: 225
Period size: 88 Copynumber: 3.2 Consensus size: 88
73261426 AGACAGTGAA
* * * * * *
73261436 TCTTATCTTTCCGAAGTAGTAGGGGAGAAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCA
1 TCTTATCTTTCTGAGGTAGCAGGGGAGAAGATTTTAGCCACAAACCTTATCTCTCTGAAGTAGCA
*
73261501 AGAGAGCAGGATGAAGATTGTAG
66 AGAGAGCAGGTTGAAGATTGTAG
* * * * * * ** * * *
73261524 TTTTATCTTTCTAAGGTAGCAAGAGAGCAGA-TTGAGGTTTATAAATCTTATCTCCCT-AAGTAG
1 TCTTATCTTTCTGAGGTAGCAGGGGAGAAGATTTTA-G-CCACAAACCTTATCTCTCTGAAGTAG
* * * * * *
73261587 -TAGTGGAGCAGATCGAAGATGGTGAA
64 CAAG-AGAGCAGGTTGAAGATTGT-AG
* * * * *
73261613 TCTTATCTCTC-GAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTATCTTTCTGATGTAGCA
1 TCTTATCTTTCTGAGGTAGCAGGGGAGAAGATTTTAGCCACAAACCTTATCTCTCTGAAGTAGCA
73261677 AGAGAGCAGGTTGAAGATTGTAG
66 AGAGAGCAGGTTGAAGATTGTAG
73261700 TCTTAT-TTTCCTGAGGTAG
1 TCTTATCTTT-CTGAGGTAG
73261719 TAAGGAAGCA
Statistics
Matches: 140, Mismatches: 46, Indels: 18
0.69 0.23 0.09
Matches are distributed among these distances:
86 2 0.01
87 25 0.18
88 86 0.61
89 27 0.19
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (88 bp):
TCTTATCTTTCTGAGGTAGCAGGGGAGAAGATTTTAGCCACAAACCTTATCTCTCTGAAGTAGCA
AGAGAGCAGGTTGAAGATTGTAG
Found at i:73261743 original size:354 final size:356
Alignment explanation
Indices: 73261078--73261764 Score: 931
Period size: 354 Copynumber: 1.9 Consensus size: 356
73261068 GAAGATGGAA
* * * *
73261078 AATCTTATCTTTCTGAGGTAGCAGAGAAGCAGATTTTAGCTACCAGCCTTATCTCCCTGAGGTAG
1 AATCTTATCTTTCCGAAGTAGCAGAGAAGAAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAG
* * * * * * *
73261143 TAAGGGAGCATGCCGAAGATTGTAGTCTTATCTTCCTGAGGTAGTAAGGAAGTAGACTGAAGATT
66 CAAGAGAGCAGGACGAAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
* *
73261208 GAAGATCTTATCTCCCTAAGATAGTAGTAGAGTAGATCGAAGACGGCGAATCTTATCTTCCTGAG
131 GAAAATCTTATCTCCCTAAGATAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCTGAG
* *
73261273 GTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTTGCTCTTTGAGGTAGTAAGAGAGCAGGTTGAA
196 GTAGCAGGGGAGCAGATTTTAGCCACCAACCTTTGCTCTTTGAGGTAGCAAGAGAGCAGGTTGAA
* *
73261338 GATTGTAGTCTTATCTTTTTGAGGTAGCAAGGAAGCAGACCGAAGATTGTAGATCTTATCTCCCT
261 GATTGTAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAAACCGAAGATTGTAGATCTTATCTCCCT
*
73261403 GAGATAGCGGCGGAACAGATCGAAGACAGTG
326 AAGATAGCGGCGGAACAGATCGAAGACAGTG
* * * * *
73261434 AATCTTATCTTTCCGAAGTAGTAGGGGAGAAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTTTCCGAAGTAGCAGAGAAGAAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAG
* * * * *
73261499 CAAGAGAGCAGGATGAAGATTGTAGTTTTATCTTTCTAAGGTAGCAA-GAGAGCAGATTG-AGGT
66 CAAGAGAGCAGGACGAAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGA-AGCAGACTGAAGAT
* * * *
73261562 TTATAAATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATC-T-CTC
130 TGA-AAATCTTATCTCCCTAAGATAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCT-
* *
73261624 GAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTAT-CT-TTCTGATGTAGCAAGAGAGCAGG
193 GAGGTAGCAGGGGAGCAGATTTTAGCCACCAACCTT-TGCTCTT-TGAGGTAGCAAGAGAGCAGG
* *
73261687 TTGAAGATTGTAGTCTTAT-TTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGTAGATCTTAT
256 TTGAAGATTGTAGTCTTATCTTT-CTGAGGTAGCAAGGAAGCAAACCGAAGATTGTAGATCTTAT
*
73261751 CTTCCTAAGATAGC
320 CTCCCTAAGATAGC
73261765 AGTGGAGTAG
Statistics
Matches: 288, Mismatches: 37, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
353 7 0.02
354 123 0.43
355 40 0.14
356 118 0.41
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (356 bp):
AATCTTATCTTTCCGAAGTAGCAGAGAAGAAGATTTTAGCCACCAGCCTTATCTCCCTGAGGTAG
CAAGAGAGCAGGACGAAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
GAAAATCTTATCTCCCTAAGATAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCTGAG
GTAGCAGGGGAGCAGATTTTAGCCACCAACCTTTGCTCTTTGAGGTAGCAAGAGAGCAGGTTGAA
GATTGTAGTCTTATCTTTCTGAGGTAGCAAGGAAGCAAACCGAAGATTGTAGATCTTATCTCCCT
AAGATAGCGGCGGAACAGATCGAAGACAGTG
Found at i:73261842 original size:45 final size:45
Alignment explanation
Indices: 73261657--73262076 Score: 178
Period size: 45 Copynumber: 9.4 Consensus size: 45
73261647 AGCCACCAAC
* * **
73261657 CTTATCTTTCTGATGTAGC-AAGAGAGCAGGTTGAAGATTGTAG-T
1 CTTATCTTCCTGAGGTAGCAAAGA-AGCAGACTGAAGATTGTAGAT
* * * *
73261701 CTTATTTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
* * ** * * **
73261746 CTTATCTTCCTAAGATAGCAGTGGAGTAGA-TCGAAG-GCG-ACGAAT
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACT-GAAGATTGTA-G-AT
*
73261791 CTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
* * * * * ** * * **
73261836 CGTATCTCCCTGAGATAGTAATGGTGTAGATTGAAGACAGT-GAAT
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAG-AT
* ** ** * * * ** **** *
73261881 CTTATTTTCCCAAGGTAGCAGGGGAGTAGATTTTAGCCACTAG-C
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
* ** *
73261925 CTTATCTCCCTGAGGTAGCAAAGGTGCAGGCTGAAGATTGTAG-T
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
* * *
73261969 CTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
* ** * **
73262014 CTTATC-TCCTTGAGATAGCAGTGGAGCAGAAC-GAAGA-TGGCGAAT
1 CTTATCTTCC-TGAGGTAGCAAAGAAGCAG-ACTGAAGATTGTAG-AT
*
73262059 CTTATCTTCCCGAGGTAG
1 CTTATCTTCCTGAGGTAG
73262077 AAGGGGAGCA
Statistics
Matches: 272, Mismatches: 89, Indels: 29
0.70 0.23 0.07
Matches are distributed among these distances:
43 1 0.00
44 103 0.38
45 158 0.58
46 9 0.03
47 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (45 bp):
CTTATCTTCCTGAGGTAGCAAAGAAGCAGACTGAAGATTGTAGAT
Found at i:73261881 original size:90 final size:90
Alignment explanation
Indices: 73261700--73261900 Score: 242
Period size: 90 Copynumber: 2.2 Consensus size: 90
73261690 AAGATTGTAG
* * * * *
73261700 TCTTATTTTCCTGAGGTAGTAAGGAAGCAAACTGAAGATTGTAGATCTTATCTTCCTAAGATAGC
1 TCTTATTTTCCTGAGGTAGCAAAGAAACAAACTGAAGATTGTAGATCGTATCTCCCTAAGATAGC
* *
73261765 AGTGGAGTAGATCGAAGGCGACGAA
66 AATGGAGTAGATCGAAGACGACGAA
* * * *
73261790 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGT
1 TCTTATTTTCCTGAGGTAGCAAAGAAACAAACTGAAGATTGTAGATCGTATCTCCCTAAGATAGC
* * *
73261855 AATGGTGTAGATTGAAGAC-AGTGAA
66 AATGGAGTAGATCGAAGACGA-CGAA
**
73261880 TCTTATTTTCCCAAGGTAGCA
1 TCTTATTTTCCTGAGGTAGCA
73261901 GGGGAGTAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 1 0.01
90 92 0.99
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (90 bp):
TCTTATTTTCCTGAGGTAGCAAAGAAACAAACTGAAGATTGTAGATCGTATCTCCCTAAGATAGC
AATGGAGTAGATCGAAGACGACGAA
Found at i:73261885 original size:444 final size:447
Alignment explanation
Indices: 73261346--73262161 Score: 1124
Period size: 444 Copynumber: 1.8 Consensus size: 447
73261336 AAGATTGTAG
** * * *
73261346 TCTTATCTTTTTGAGGTAGCAAGGAAGCAGACCGAAGATTGTAGATCTTATCTCCCTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTGTAGATCGTATCTCCCTGAGATAGC
** * *
73261411 GGCGGAACAGATCGAAGACAGTGAATCTTATCTTTCCGAA-GTAGTAGGGGAGAAGATTTTAGCC
66 AACGGAACAGATCGAAGACAGTGAATCTTAT-TTTCCCAAGGTAGCAGGGGAGAAGATTTTAGCC
* *
73261475 ACTAGCCTTATCTCTCTGAGGTAGC-AAGAGAGCAGGATGAAGATTGTAGTTTTATCTT-TCTAA
130 ACTAGCCTTATCTCCCTGAGGTAGCAAAG-GAGCAGGATGAAGATTGTAGTCTTATCTTCT-TAA
* * * * *
73261538 GGTAGCAA-GAGAGCAGATTGAGGTTTATAAATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATC
193 GGTAGCAAGGA-AGCAGACTGAAGATTATAAATCTTATCTCCCTAAGATAGCAGTGGAGCAGAAC
* * * * * *
73261601 GAAGATGGTGAATCTTATC-TCTCGAGGTAGCAGGGGAGTAGATTTTAGCCACCAACCTTATCTT
257 GAAGATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCTC
* * * ** * * *
73261665 TCTGATGTAGCAAGAGAGCAGGTTGAAGATTGTA-GTCTTATTTTCCTGAGGTAGTAAGGAAGCA
322 CCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGGTCTTATCTCCCTGAGGTAGTAAGGAAGCA
73261729 AACTGAAGATTGTAGATCTTATCTTCCTAAGATAGCAGTGGAGTAGATCGAAGGCGACGAA
387 AACTGAAGATTGTAGATCTTATCTTCCTAAGATAGCAGTGGAGTAGATCGAAGGCGACGAA
* *
73261790 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTGTAGATCGTATCTCCCTGAGATAGC
* *** * *
73261855 AATGGTGTAGATTGAAGACAGTGAATCTTATTTTCCCAAGGTAGCAGGGGAGTAGATTTTAGCCA
66 AACGGAACAGATCGAAGACAGTGAATCTTATTTTCCCAAGGTAGCAGGGGAGAAGATTTTAGCCA
* * *
73261920 CTAGCCTTATCTCCCTGAGGTAGCAAAGGTGCAGGCTGAAGATTGTAGTCTTATCTTCTTGAGGT
131 CTAGCCTTATCTCCCTGAGGTAGCAAAGGAGCAGGATGAAGATTGTAGTCTTATCTTCTTAAGGT
* * * * *
73261985 AGCAAGGAAGTAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGCAGTGGAGCAGAACGAAG
196 AGCAAGGAAGCAGACTGAAGATTATAAATCTTATCTCCCTAAGATAGCAGTGGAGCAGAACGAAG
*
73262050 ATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAGCCTTACCTCCCTG
261 ATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCTCCCTG
73262115 AGGTAGCAAGAAAGCAGACTGAAGATTGAAGGTCTTATCTCCCTGAG
326 AGGTAGCAAGAAAGCAGACTGAAGATTGAAGGTCTTATCTCCCTGAG
73262162 TTTATAGTGG
Statistics
Matches: 318, Mismatches: 47, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
443 7 0.02
444 191 0.60
445 39 0.12
446 67 0.21
447 14 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (447 bp):
TCTTATCTTCCTGAGGTAGCAAAGAAACAGACCGAAGATTGTAGATCGTATCTCCCTGAGATAGC
AACGGAACAGATCGAAGACAGTGAATCTTATTTTCCCAAGGTAGCAGGGGAGAAGATTTTAGCCA
CTAGCCTTATCTCCCTGAGGTAGCAAAGGAGCAGGATGAAGATTGTAGTCTTATCTTCTTAAGGT
AGCAAGGAAGCAGACTGAAGATTATAAATCTTATCTCCCTAAGATAGCAGTGGAGCAGAACGAAG
ATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCACCAACCTTACCTCCCTG
AGGTAGCAAGAAAGCAGACTGAAGATTGAAGGTCTTATCTCCCTGAGGTAGTAAGGAAGCAAACT
GAAGATTGTAGATCTTATCTTCCTAAGATAGCAGTGGAGTAGATCGAAGGCGACGAA
Found at i:73261973 original size:44 final size:46
Alignment explanation
Indices: 73261925--73262033 Score: 143
Period size: 44 Copynumber: 2.4 Consensus size: 46
73261915 AGCCACTAGC
* * *
73261925 CTTATCTCCCTGAGGTAGCAAAGG-TGCAGGCTGAAGATTGTAG-T
1 CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACTGAAGATTGTAGAT
* *
73261969 CTTATCTTCTTGAGGTAGC-AAGGAAGTAGACTGAAGATTGTAGAT
1 CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACTGAAGATTGTAGAT
*
73262014 CTTATCTCCTTGAGATAGCA
1 CTTATCTCCTTGAGGTAGCA
73262034 GTGGAGCAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
43 4 0.07
44 33 0.60
45 18 0.33
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (46 bp):
CTTATCTCCTTGAGGTAGCAAAGGAAGCAGACTGAAGATTGTAGAT
Found at i:73261985 original size:178 final size:179
Alignment explanation
Indices: 73261790--73262161 Score: 487
Period size: 178 Copynumber: 2.1 Consensus size: 179
73261780 AGGCGACGAA
*
73261790 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGT
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGC
* * ** * * * *
73261855 AATGGTGTAGATTGAAGACAGTGAATCTTATTTTCCCAAGGTAGCAGGGGAGTAGATTTTAGCCA
66 AATGGAGCAGAACGAAGACAGCGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
* * ** * *
73261920 CTAGCCTTATCTCCCTGAGGTAGCAA-AGGTGCAGGCTGAAGATTGTA-G
131 CCAGCCTTACCTCCCTGAGGTAGCAAGA-AAGCAGACTGAAGATTGAAGG
* * ** * *
73261968 TCTTATCTTCTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGATCTTATCTCCTTGAGATAGC
1 TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGC
* ** *
73262033 AGTGGAGCAGAACGAAGATGGCGAATCTTATCTTCCCGAGGTAGAAGGGGAGCAGATTTTAGCCA
66 AATGGAGCAGAACGAAGACAGCGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
73262098 CCAGCCTTACCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGG
131 CCAGCCTTACCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGG
*
73262147 TCTTATCTCCCTGAG
1 TCTTATCTTCCTGAG
73262162 TTTATAGTGG
Statistics
Matches: 165, Mismatches: 27, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
178 150 0.91
179 15 0.09
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (179 bp):
TCTTATCTTCCTGAGGTAGCAAAGAAACAGACTGAAGATTGTAGATCGTATCTCCCTGAGATAGC
AATGGAGCAGAACGAAGACAGCGAATCTTATCTTCCCAAGGTAGAAGGGGAGCAGATTTTAGCCA
CCAGCCTTACCTCCCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGG
Found at i:73264101 original size:23 final size:22
Alignment explanation
Indices: 73264066--73264116 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 22
73264056 TACATTACAC
* *
73264066 TATTTTTTTAATTTATGTATAT
1 TATTTTTTAAATTAATGTATAT
73264088 TATTTATTTAAATTAATGTATAT
1 TATTT-TTTAAATTAATGTATAT
73264111 TATTTT
1 TATTTT
73264117 GTATATTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 6 0.23
23 20 0.77
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TATTTTTTAAATTAATGTATAT
Found at i:73266272 original size:47 final size:48
Alignment explanation
Indices: 73266203--73266424 Score: 239
Period size: 46 Copynumber: 4.7 Consensus size: 48
73266193 GGTGCTTATT
* *
73266203 CCATGTCCCAGACATGGTCTTACAGTAGCTCAT-ATCTC-ATGTCGATG
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCATCATCTCGATGCCGATG
*
73266250 CCATGTCCCAGACATCGTCTTACACT-GACT-ATCATCTCG-TACCCGATG
1 CCATGTCCCAGACAT-GTCTTACACTAG-CTCATCATCTCGAT-GCCGATG
* * * * *
73266298 -CATGTCCCAGACATGCCTTACACTGGCTTA-CGTCTCGAGGCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
73266344 -CATGTCCCAGACATGTCTTACACTAGCTC-TCATCTCGATGCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
* *
73266390 CGATGTCCCAGACATGGTCTTACACTGGCTC-TCAT
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCATCAT
73266425 AATGTGGCTG
Statistics
Matches: 150, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
46 66 0.44
47 61 0.41
48 23 0.15
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACATGTCTTACACTAGCTCATCATCTCGATGCCGATG
Found at i:73266396 original size:93 final size:95
Alignment explanation
Indices: 73266204--73266419 Score: 264
Period size: 93 Copynumber: 2.3 Consensus size: 95
73266194 GTGCTTATTC
* * * * ** * *
73266204 CATGTCCCAGACATGGTCTTACAGTAGCTCATATCTC-ATGTCGATGCCATGTCCCAGACATCGT
1 CATGTCCCAGACATGGCCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGT
73266268 CTTACACTGACTATCATCTCGTACCCGATG
66 CTTACACTGACTATCATCTCGTACCCGATG
73266298 CATGTCCCAGACAT-GCCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGACATGGCCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGT
* *
73266360 CTTACACT-AGCTCTCATCTCG-ATGCCGATG
66 CTTACACTGA-CTATCATCTCGTA-CCCGATG
*
73266390 CGATGTCCCAGACATGGTCTTACACTGGCT
1 C-ATGTCCCAGACATGGCCTTACACTGGCT
73266420 CTCATAATGT
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
91 2 0.02
92 27 0.25
93 43 0.41
94 34 0.32
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.27
Consensus pattern (95 bp):
CATGTCCCAGACATGGCCTTACACTGGCTTACGTCTCGAGGCCGATGCCATGTCCCAGACATCGT
CTTACACTGACTATCATCTCGTACCCGATG
Found at i:73266443 original size:47 final size:45
Alignment explanation
Indices: 73266204--73266446 Score: 240
Period size: 47 Copynumber: 5.2 Consensus size: 45
73266194 GTGCTTATTC
* * * *
73266204 CATGTCCCAGACATGGTCTTACAGTAGCTCAT-ATCTCATGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTC-TCATCTCGTGCCGATG
* * *
73266250 CCATGTCCCAGACATCGTCTTACACTGACTATCATCTCGTACCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGT-GCCGATG
* * *
73266298 CATGTCCCAGACATGCCTTACACTGGCT-TACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCG-TGCCGATG
*
73266344 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCG-TGCCGATG
* *
73266390 CGATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG
1 C-ATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGT-GCCGATG
73266438 CATGTCCCA
1 CATGTCCCA
73266447 AATATGTCCT
Statistics
Matches: 167, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 66 0.40
47 68 0.41
48 31 0.19
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTGCCGATG
Found at i:73273963 original size:47 final size:49
Alignment explanation
Indices: 73273889--73274120 Score: 197
Period size: 47 Copynumber: 4.9 Consensus size: 49
73273879 ACGTGGGTAA
* *
73273889 GATGCCGATGCGATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTC
1 GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
*
73273937 -ATGTCGATGCCATGTTCCAGACATGGTCTTACACT-GACT-ATCATCTC
1 GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAG-CTCATCATCTC
* * * *
73273984 GTAAT--CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTC
1 G--ATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
* * *
73274030 GAGGCCGATG-CATG-TCCTAGACAT-GTCTTACACTAGCAC-TCGTCTC
1 GATGCCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCATCATCTC
* * *
73274076 GATGCCAATGCAATG-TCCTAGACATGGTCTTACACTGGCTC-TCAT
1 GATGCCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCATCAT
73274121 AATGTGGCTG
Statistics
Matches: 155, Mismatches: 16, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 62 0.40
47 67 0.43
48 21 0.14
50 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (49 bp):
GATGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCATCATCTC
Found at i:73274153 original size:140 final size:141
Alignment explanation
Indices: 73273892--73274153 Score: 311
Period size: 140 Copynumber: 1.9 Consensus size: 141
73273882 TGGGTAAGAT
* * * *
73273892 GCCGATGCGATGTCCCAGACATGGTCTTACACTAGCTCATATCTCATGTCGATGCCATGTTCCAG
1 GCCGATGCGATGTCCCAGACATGGTCTTACACTAGCACATATCTCATGCCAATGCAATGTTCCAG
* * *
73273957 ACATGGTCTTACACTGACTATCATCTCGTAATCGATGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAATCGATGCATGTACCAAACATGTCTTACACTGGCT
73274022 TACGTCTCGAG
131 TACGTCTCGAG
* *
73274033 GCCGATGC-ATGTCCTAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGCCAATGCAATG-TCC
1 GCCGATGCGATGTCCCAGACATGGTCTTACACTAGCACAT-ATCTC-ATGCCAATGCAATGTTCC
* * ** *
73274094 TAGACATGGTCTTACACTGGCTCTCATAAT-GT-GGCTGATGCATGTACTAAACATGTCTTA
64 -AGACATGGTCTTACACTGACTATCAT-ATCGTAATC-GATGCATGTACCAAACATGTCTTA
73274154 TACTAGCCAT
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
138 1 0.01
139 22 0.22
140 70 0.69
141 9 0.09
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (141 bp):
GCCGATGCGATGTCCCAGACATGGTCTTACACTAGCACATATCTCATGCCAATGCAATGTTCCAG
ACATGGTCTTACACTGACTATCATATCGTAATCGATGCATGTACCAAACATGTCTTACACTGGCT
TACGTCTCGAG
Found at i:73280515 original size:23 final size:22
Alignment explanation
Indices: 73280481--73280527 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
73280471 AGTGGATGGT
*
73280481 AATGAATGAAATT-ATAAAATAA
1 AATGAATAAAATTAAT-AAATAA
73280503 AATGTAATAAAATTAATAAATAA
1 AATG-AATAAAATTAATAAATAA
73280526 AA
1 AA
73280528 ACAAAACATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 4 0.18
23 16 0.73
24 2 0.09
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (22 bp):
AATGAATAAAATTAATAAATAA
Found at i:73284275 original size:46 final size:46
Alignment explanation
Indices: 73284225--73284400 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73284215 TGGTTGAGCA
73284225 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73284271 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73284316 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73284364 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73284401 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73284381 original size:93 final size:93
Alignment explanation
Indices: 73284222--73284393 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73284212 GGATGGTTGA
* *
73284222 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73284287 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73284315 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73284380 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73284394 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73300920 original size:16 final size:16
Alignment explanation
Indices: 73300895--73300945 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
73300885 ATGAATCGAC
* *
73300895 AAAA-GCCGAAATGCT
1 AAAATGCCGAAAAGCG
73300910 AAAATGCCGAAAAGCG
1 AAAATGCCGAAAAGCG
* *
73300926 AAAATGTCAAAAAGTCG
1 AAAATGCCGAAAAG-CG
73300943 AAA
1 AAA
73300946 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 4 0.13
16 21 0.70
17 5 0.17
ACGTcount: A:0.53, C:0.16, G:0.20, T:0.12
Consensus pattern (16 bp):
AAAATGCCGAAAAGCG
Found at i:73301179 original size:29 final size:29
Alignment explanation
Indices: 73301124--73301237 Score: 128
Period size: 28 Copynumber: 4.0 Consensus size: 29
73301114 GTGATCATGA
* *
73301124 ATATGAATGTGA-CTGGACCTAACGGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
*
73301152 ATATAAATGTGATCTGGGCCTAATGGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
* * *
73301181 ATAT-AAGGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATCTGGGCCTAATGGGCC
*
73301209 ATATGAA-GATGAT-TGGGCTTAATGGGCC
1 ATATGAATG-TGATCTGGGCCTAATGGGCC
73301237 A
1 A
73301238 GATACAGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 51 0.68
29 24 0.32
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGATCTGGGCCTAATGGGCC
Found at i:73303028 original size:15 final size:15
Alignment explanation
Indices: 73303010--73303043 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
73303000 TATTATTTTC
73303010 ATGTTAATTATTAAT
1 ATGTTAATTATTAAT
* *
73303025 ATGTTAATTTTTATT
1 ATGTTAATTATTAAT
73303040 ATGT
1 ATGT
73303044 AGTGGGTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:73306359 original size:21 final size:22
Alignment explanation
Indices: 73306333--73306374 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
73306323 CACTTAACAC
73306333 AGGGGC-ACACGACCGTGTGAG
1 AGGGGCAACACGACCGTGTGAG
*
73306354 AGGGGCAACACGCCCGTGTGA
1 AGGGGCAACACGACCGTGTGA
73306375 CCATTTAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.24, C:0.26, G:0.40, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGACCGTGTGAG
Found at i:73318217 original size:26 final size:24
Alignment explanation
Indices: 73318188--73318236 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
73318178 ATAAAAAAAG
*
73318188 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
73318214 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
73318237 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:73318256 original size:21 final size:21
Alignment explanation
Indices: 73318207--73318265 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
73318197 ATAATAAATC
*
73318207 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
73318227 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
73318249 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
73318266 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:73335204 original size:43 final size:41
Alignment explanation
Indices: 73335137--73335219 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 41
73335127 CATACATTGC
*
73335137 CCACGTCCCAGACGTGGTCCTACATGTAATCAAATATCGATG
1 CCACGTCCCAGACGTGGTCCTACATGAAATCAAATA-CGATG
*
73335179 CCACTGTCCCAGACAG-GGTCTTACATGAAATCAAATACGAT
1 CCAC-GTCCCAGAC-GTGGTCCTACATGAAATCAAATACGAT
73335220 ACCGATGTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 8 0.22
43 28 0.76
44 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (41 bp):
CCACGTCCCAGACGTGGTCCTACATGAAATCAAATACGATG
Found at i:73341441 original size:68 final size:67
Alignment explanation
Indices: 73341369--73341518 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73341359 CATCATGTGT
* * * *
73341369 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73341431 ATGTAG
62 ATGTAG
** * *
73341437 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73341502 AG
66 AG
73341504 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73341519 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73341474 original size:64 final size:64
Alignment explanation
Indices: 73341393--73341576 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73341383 AGACATTATG
* *
73341393 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73341457 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73341522 AA
63 AA
* * * *
73341524 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73341577 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73348584 original size:26 final size:27
Alignment explanation
Indices: 73348554--73348604 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
73348544 TCTCATCCCA
* *
73348554 ATTTTATCCTTGGTAAA-ATTATAATG
1 ATTTTACCCTTGATAAATATTATAATG
73348580 ATTTTACCCTTGATAAATATTATAA
1 ATTTTACCCTTGATAAATATTATAA
73348605 ACTATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (27 bp):
ATTTTACCCTTGATAAATATTATAATG
Found at i:73348885 original size:59 final size:57
Alignment explanation
Indices: 73348765--73348885 Score: 136
Period size: 58 Copynumber: 2.1 Consensus size: 57
73348755 ATTTCATTTT
* * * * *
73348765 CATTCTCATTTCCATTTTGAGAAAACCACATTCATTTTCAAATGATTCTATTTTCTC
1 CATTTTCATTTCCATTTTGAGAAAACCACAATAATTTCCAAATGATTCCATTTTCTC
* * *
73348822 CATTTTCATTTTCATTTTTGAGAAAACCATAATAATTTCCTAAATGTTTTCCA-TTTCTC
1 CATTTTCATTTCCA-TTTTGAGAAAACCACAATAATTTCC-AAATG-ATTCCATTTTCTC
73348881 CATTT
1 CATTT
73348886 CTACTCATTC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
57 12 0.23
58 21 0.40
59 16 0.30
60 4 0.08
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.46
Consensus pattern (57 bp):
CATTTTCATTTCCATTTTGAGAAAACCACAATAATTTCCAAATGATTCCATTTTCTC
Found at i:73351752 original size:40 final size:40
Alignment explanation
Indices: 73351707--73351786 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
73351697 GTGAGTCTAG
*
73351707 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTTTGTA
1 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
73351747 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
1 TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
73351787 GCTCGAATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (40 bp):
TTTCAGGGGAAATTTACGGATCTTAATTTGGAGCTCTGTA
Found at i:73357996 original size:16 final size:16
Alignment explanation
Indices: 73357972--73358008 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
73357962 CTCATAATAT
*
73357972 TGAAAGAGCTCAAGTA
1 TGAATGAGCTCAAGTA
*
73357988 TGAATGAGCTCAAGTT
1 TGAATGAGCTCAAGTA
73358004 TGAAT
1 TGAAT
73358009 ATGAACAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (16 bp):
TGAATGAGCTCAAGTA
Found at i:73359151 original size:17 final size:18
Alignment explanation
Indices: 73359124--73359157 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
73359114 TAAAATTATA
*
73359124 ATTTTTATTATGATTTTT
1 ATTTTTATTATAATTTTT
73359142 ATTTTT-TTATAATTTT
1 ATTTTTATTATAATTTT
73359158 AAATTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
ATTTTTATTATAATTTTT
Found at i:73359767 original size:23 final size:23
Alignment explanation
Indices: 73359715--73359771 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
73359705 TTTCTCTCTC
*
73359715 CAAGGTTAGGGCTTTTTATTTTT
1 CAAGGTTAGGGCGTTTTATTTTT
* *
73359738 TATGGTTAGGG-GTTTTATTTTAT
1 CAAGGTTAGGGCGTTTTATTTT-T
73359761 CAAGGTTAGGG
1 CAAGGTTAGGG
73359772 TTAGGATTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 9 0.32
23 19 0.68
ACGTcount: A:0.19, C:0.05, G:0.28, T:0.47
Consensus pattern (23 bp):
CAAGGTTAGGGCGTTTTATTTTT
Found at i:73359772 original size:22 final size:21
Alignment explanation
Indices: 73359715--73359773 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 21
73359705 TTTCTCTCTC
73359715 CAAGGTTAGGGCTTTTTATTTTT
1 CAAGGTTAGGG--TTTTATTTTT
* *
73359738 TATGGTTAGGGGTTTTATTTTAT
1 CAAGGTTA-GGGTTTTATTTT-T
73359761 CAAGGTTAGGGTT
1 CAAGGTTAGGGTT
73359774 AGGATTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 14 0.47
23 13 0.43
24 3 0.10
ACGTcount: A:0.19, C:0.05, G:0.27, T:0.49
Consensus pattern (21 bp):
CAAGGTTAGGGTTTTATTTTT
Found at i:73367225 original size:93 final size:93
Alignment explanation
Indices: 73367066--73367237 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
73367056 CGCCCATAAG
* *** *
73367066 CGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCAGCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
73367131 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
73367159 CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
73367224 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73367238 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGAAATTCGCAGCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:73367227 original size:46 final size:45
Alignment explanation
Indices: 73367059--73367234 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
73367049 TGTAACCCGC
* * * ** *
73367059 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGAATTCGCAT
* * *
73367105 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAATTCGC-A--T
* *
73367151 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGAAATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGG-AATTCGCAT
*
73367198 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73367235 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 16, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 5 0.05
46 59 0.56
47 31 0.30
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAATTCGCAT
Found at i:73371869 original size:17 final size:17
Alignment explanation
Indices: 73371847--73371881 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
73371837 ACTCAATGAG
73371847 GAATCTATACATATAAA
1 GAATCTATACATATAAA
73371864 GAATCTATACATATAAA
1 GAATCTATACATATAAA
73371881 G
1 G
73371882 TATAACTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (17 bp):
GAATCTATACATATAAA
Found at i:73375319 original size:40 final size:39
Alignment explanation
Indices: 73375234--73375398 Score: 258
Period size: 40 Copynumber: 4.2 Consensus size: 39
73375224 GGACTAAGAT
* *
73375234 CCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTC
*
73375273 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTC
73375313 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTC
* * *
73375353 CCGAAGGCATTTGTACGAGTTGCTATATCCGGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTC
73375392 CCGAAGG
1 CCGAAGG
73375399 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
39 42 0.36
40 76 0.64
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTC
Found at i:73375387 original size:79 final size:79
Alignment explanation
Indices: 73375234--73375398 Score: 260
Period size: 79 Copynumber: 2.1 Consensus size: 79
73375224 GGACTAAGAT
* * *
73375234 CCGAAGGCATTTGTGCTAGTGACTATATCCGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTAT
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAT
*
73375299 ATCCGGGCTAAGTC
66 ATCCGGGCTAAATC
* *
73375313 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTGCTA
1 CCGAAGGCATTTGTGCGAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA
73375378 TATCC-GGCTAAATC
65 TATCCGGGCTAAATC
73375392 CCGAAGG
1 CCGAAGG
73375399 TACTTGGGTT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 43 0.54
80 36 0.46
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAT
ATCCGGGCTAAATC
Found at i:73383351 original size:40 final size:40
Alignment explanation
Indices: 73383303--73383508 Score: 351
Period size: 40 Copynumber: 5.2 Consensus size: 40
73383293 GGACTAAGAT
* *
73383303 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
73383343 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
73383383 TCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73383423 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
73383463 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73383502 CCGAAGG
1 CCGAAGG
73383509 TACTTGGGTT
Statistics
Matches: 160, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 145 0.91
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:73394757 original size:53 final size:54
Alignment explanation
Indices: 73394633--73394884 Score: 234
Period size: 55 Copynumber: 4.7 Consensus size: 54
73394623 CAGGTACCTT
* * * * * *
73394633 ACCATTGCCATGACTTGTCATGGTTTTACGTGGTATCC-T---TT-TGAAACTT
1 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
* * * *
73394682 ACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTC
1 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
* * * *
73394735 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTTCCTTATGGTAACTT
1 ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTC
* * *
73394790 ATCAATGCCATGTCTTGAG-ATGGTCTTACATGATATCCTTGCCTTA-GAAACCTC
1 ACCAATGCCATGCCTTG-GCATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTC
*
73394844 ACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
73394885 AAATCCTAAT
Statistics
Matches: 166, Mismatches: 24, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 33 0.20
50 1 0.01
52 2 0.01
53 47 0.28
54 10 0.06
55 70 0.42
56 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAACTC
Found at i:73394821 original size:108 final size:110
Alignment explanation
Indices: 73394677--73394877 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
73394667 ATCCTTTTGA
* *
73394677 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
73394740 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATGGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATGGT
* * *
73394785 AACTTATCAATGCCATGTCTTGAGATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
1 AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
73394850 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
73394878 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.57
109 8 0.10
110 27 0.32
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTTCCTTATGGT
Found at i:73411818 original size:42 final size:42
Alignment explanation
Indices: 73411706--73411862 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 42
73411696 TGTGTTATCT
** *
73411706 TGTAAGACCATGCCTGGGACGTTGGCATCGACT-TATGATT-TA
1 TGTAAGACCATGTATGGGACG-TGGCATCGA-TATTTGATTATA
* * *
73411748 CGTGTAAGACCATGTCTAGGACGTTGGCATC-ATATTTGATTTTA
1 --TGTAAGACCATGTATGGGACG-TGGCATCGATATTTGATTATA
* *
73411792 TGTAAGACCTTGTTTGGGACAGTGGCATCGATATTTGATTATA
1 TGTAAGACCATGTATGGGAC-GTGGCATCGATATTTGATTATA
73411835 TGTAAGACCATGTATGGGACGTCGGCAT
1 TGTAAGACCATGTATGGGACGT-GGCAT
73411863 TATACGAGCT
Statistics
Matches: 99, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
42 27 0.27
43 43 0.43
44 29 0.29
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTATGGGACGTGGCATCGATATTTGATTATA
Found at i:73411820 original size:86 final size:85
Alignment explanation
Indices: 73411706--73411862 Score: 194
Period size: 86 Copynumber: 1.8 Consensus size: 85
73411696 TGTGTTATCT
*
73411706 TGTAAGACCATGCCTGGGACGTTGGCATCGACT-TATGATT-TACGTGTAAGACCATGTCTAGGA
1 TGTAAGACCATGCCTGGGACGTTGGCATCGA-TATATGATTATA--TGTAAGACCATGTATAGGA
*
73411769 CGTTGGCATCATATTTGATTTTA
63 CGTCGGCATCATATTTGATTTTA
* ** * *
73411792 TGTAAGACCTTGTTTGGGACAG-TGGCATCGATATTTGATTATATGTAAGACCATGTATGGGACG
1 TGTAAGACCATGCCTGGGAC-GTTGGCATCGATATATGATTATATGTAAGACCATGTATAGGACG
73411856 TCGGCAT
65 TCGGCAT
73411863 TATACGAGCT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
85 26 0.43
86 32 0.52
87 3 0.05
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (85 bp):
TGTAAGACCATGCCTGGGACGTTGGCATCGATATATGATTATATGTAAGACCATGTATAGGACGT
CGGCATCATATTTGATTTTA
Found at i:73425975 original size:44 final size:43
Alignment explanation
Indices: 73425865--73425979 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 43
73425855 AGCTTGTACA
* * * *
73425865 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAGATATCG
1 ATGCCAACGTCCTAGACGTGGTCTTACACGAAATCACAAATCG
* *
73425908 ATACC-ACTGT-CTCAGATAG-GGTCTTACACGAAAATCACAAATCG
1 ATGCCAAC-GTCCT-AGA-CGTGGTCTTACACG-AAATCACAAATCG
73425952 ATGCCAACGTCCTAGACGTGGTCTTACA
1 ATGCCAACGTCCTAGACGTGGTCTTACA
73425980 TGATAACACA
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
42 4 0.07
43 20 0.35
44 29 0.51
45 4 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCTAGACGTGGTCTTACACGAAATCACAAATCG
Found at i:73433020 original size:21 final size:21
Alignment explanation
Indices: 73432991--73433030 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73432981 CATAGTTAGT
*
73432991 AGAGGAGGAGATTTGGCTACA
1 AGAGAAGGAGATTTGGCTACA
*
73433012 AGAGAAGGATATTTGGCTA
1 AGAGAAGGAGATTTGGCTA
73433031 GAAAAGCAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (21 bp):
AGAGAAGGAGATTTGGCTACA
Found at i:73442081 original size:27 final size:27
Alignment explanation
Indices: 73442049--73442130 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
73442039 CCATATTGTG
73442049 GGCCCATGTGGGTCCACACTCTTGTAT
1 GGCCCATGTGGGTCCACACTCTTGTAT
** * *
73442076 GGCCCACAT-AG-CC-CA-TATTGTA-
1 GGCCCATGTGGGTCCACACTCTTGTAT
73442098 GGCCCATGTGGGTCCACACTCTTGTAT
1 GGCCCATGTGGGTCCACACTCTTGTAT
73442125 GGCCCA
1 GGCCCA
73442131 CATAGCCCAA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
22 7 0.17
23 7 0.17
24 4 0.10
25 4 0.10
26 7 0.17
27 13 0.31
ACGTcount: A:0.18, C:0.32, G:0.24, T:0.26
Consensus pattern (27 bp):
GGCCCATGTGGGTCCACACTCTTGTAT
Found at i:73442106 original size:49 final size:49
Alignment explanation
Indices: 73442034--73442139 Score: 203
Period size: 49 Copynumber: 2.2 Consensus size: 49
73442024 TAATGGGCCT
*
73442034 ATAGCCCATATTGTGGGCCCATGTGGGTCCACACTCTTGTATGGCCCAC
1 ATAGCCCATATTGTAGGCCCATGTGGGTCCACACTCTTGTATGGCCCAC
73442083 ATAGCCCATATTGTAGGCCCATGTGGGTCCACACTCTTGTATGGCCCAC
1 ATAGCCCATATTGTAGGCCCATGTGGGTCCACACTCTTGTATGGCCCAC
73442132 ATAGCCCA
1 ATAGCCCA
73442140 AAAATGGCCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (49 bp):
ATAGCCCATATTGTAGGCCCATGTGGGTCCACACTCTTGTATGGCCCAC
Found at i:73463068 original size:29 final size:29
Alignment explanation
Indices: 73462997--73463113 Score: 94
Period size: 29 Copynumber: 4.1 Consensus size: 29
73462987 TCTCGCCATG
* * * *
73462997 AAGACATCCTTTTAACAGAGTTTGCTACA
1 AAGACATCCTTTTAACTGAGATAGCCACA
* * *
73463026 ATG-CATTCATTTAACTGAGATAGCCACA
1 AAGACATCCTTTTAACTGAGATAGCCACA
** * * *
73463054 AAGACATTTTTTTAACAGAAATAGCCATA
1 AAGACATCCTTTTAACTGAGATAGCCACA
*
73463083 AAGACATCCTTTTAA-TAGAGATAGCAACA
1 AAGACATCCTTTTAACT-GAGATAGCCACA
73463112 AA
1 AA
73463114 AGCTCACTTT
Statistics
Matches: 67, Mismatches: 19, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
28 21 0.31
29 46 0.69
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (29 bp):
AAGACATCCTTTTAACTGAGATAGCCACA
Found at i:73463123 original size:29 final size:29
Alignment explanation
Indices: 73463091--73463161 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 29
73463081 TAAAGACATC
* *
73463091 CTTTTAATAGAGATAGCAACAAAAGCTCA
1 CTTTTAATAGAAATAACAACAAAAGCTCA
* * * *
73463120 CTTTTAACAAAAATAACCACAAAGGCTCA
1 CTTTTAATAGAAATAACAACAAAAGCTCA
73463149 CTTTT-ATAGAAAT
1 CTTTTAATAGAAAT
73463162 TGGTATTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 6 0.18
29 28 0.82
ACGTcount: A:0.45, C:0.18, G:0.10, T:0.27
Consensus pattern (29 bp):
CTTTTAATAGAAATAACAACAAAAGCTCA
Found at i:73465396 original size:23 final size:23
Alignment explanation
Indices: 73465370--73465420 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
73465360 AATCACTAAT
*
73465370 TTGCACTAAAGTGACACTTTCAC
1 TTGCACTAAAGTGACACTATCAC
* * *
73465393 TTGCACTTAAGTGCCACTATCAT
1 TTGCACTAAAGTGACACTATCAC
73465416 TTGCA
1 TTGCA
73465421 TCGAAATACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (23 bp):
TTGCACTAAAGTGACACTATCAC
Found at i:73469566 original size:15 final size:15
Alignment explanation
Indices: 73469546--73469576 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73469536 TGAAATCATT
73469546 CTACATTGCCTATTG
1 CTACATTGCCTATTG
73469561 CTACATTGCCTATTG
1 CTACATTGCCTATTG
73469576 C
1 C
73469577 ATGAACAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.29, G:0.13, T:0.39
Consensus pattern (15 bp):
CTACATTGCCTATTG
Found at i:73471032 original size:19 final size:19
Alignment explanation
Indices: 73471008--73471047 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
73470998 ATTAATTTTG
73471008 ATCAAGTACAATT-AAATTA
1 ATCAAGTA-AATTAAAATTA
73471027 ATCAAGTAAATTAAAATTA
1 ATCAAGTAAATTAAAATTA
73471046 AT
1 AT
73471048 TTGATATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (19 bp):
ATCAAGTAAATTAAAATTA
Found at i:73475177 original size:28 final size:28
Alignment explanation
Indices: 73475118--73475179 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
73475108 AGGAAGCGTT
* * *
73475118 CTGGTGGCTATGCCACAAATATCTGTTT
1 CTGGTGGCTATGCCACAAATACCTGATG
*
73475146 CTGGTGGCTCTGCCACAAATACCTGATG
1 CTGGTGGCTATGCCACAAATACCTGATG
73475174 CTGGTG
1 CTGGTG
73475180 AAATATCTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAATACCTGATG
Found at i:73483145 original size:27 final size:27
Alignment explanation
Indices: 73483115--73483176 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
73483105 ATTTACTAAA
73483115 ATACCCCTAAGTATG-AAAATTACCACT
1 ATACCCCTAAG-ATGCAAAATTACCACT
* * *
73483142 ATA-CCCTTAGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCACT
73483168 ATACCCCTA
1 ATACCCCTA
73483177 GGGTTAGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.69
27 7 0.24
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCACT
Found at i:73483326 original size:28 final size:28
Alignment explanation
Indices: 73483281--73483396 Score: 139
Period size: 28 Copynumber: 4.2 Consensus size: 28
73483271 GGAGGAAGCG
*
73483281 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
73483309 TTCTGGTGGCTCTACCACAAATATCTGA
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
73483337 TTCTGGTGGCACTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
73483365 ATT-TGGTGACTCTGTCA-TAATATCTG-
1 -TTCTGGTGGCTCTGCCACAAATATCTGT
73483391 TTCTGG
1 TTCTGG
73483397 CAGTCATACT
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
25 2 0.03
26 3 0.04
27 8 0.11
28 61 0.80
29 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:73496018 original size:29 final size:29
Alignment explanation
Indices: 73495976--73496035 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
73495966 AGAGAGAAAG
73495976 ATGAGATGATTCTTTAAGTTTCCATAAAA
1 ATGAGATGATTCTTTAAGTTTCCATAAAA
73496005 ATGAGATGATTCTTTAAGTTTCCATAAAA
1 ATGAGATGATTCTTTAAGTTTCCATAAAA
73496034 AT
1 AT
73496036 ATCTATTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (29 bp):
ATGAGATGATTCTTTAAGTTTCCATAAAA
Found at i:73496773 original size:32 final size:31
Alignment explanation
Indices: 73496737--73496796 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73496727 AGTTTAAGCT
*
73496737 CAAGCTCAAATATTTTTGGATTTGGATAAACG
1 CAAGCTC-AATATTTTTAGATTTGGATAAACG
* *
73496769 CAAGCTCCATTTTTTTAGATTTGGATAA
1 CAAGCTCAATATTTTTAGATTTGGATAA
73496797 TTTCAAGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (31 bp):
CAAGCTCAATATTTTTAGATTTGGATAAACG
Found at i:73512356 original size:21 final size:22
Alignment explanation
Indices: 73512310--73512368 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
73512300 GGAAAGCTAT
* *
73512310 TGATTTTCAAAAGAAAATAGAA
1 TGATTTTCAAAAGAGAACAGAA
73512332 -GATTTTCAAAAGAGAACA-AA
1 TGATTTTCAAAAGAGAACAGAA
* *
73512352 TGATTTTGAACAGAGAA
1 TGATTTTCAAAAGAGAA
73512369 TAGAGACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.51, C:0.07, G:0.17, T:0.25
Consensus pattern (22 bp):
TGATTTTCAAAAGAGAACAGAA
Found at i:73515888 original size:70 final size:70
Alignment explanation
Indices: 73515775--73515923 Score: 298
Period size: 70 Copynumber: 2.1 Consensus size: 70
73515765 GATGCTCATG
73515775 AAGAGCTGCATTTGTGTCTGCAATAAATGCTAGATCACAACTGATCGAATCATGTAACAGGACGC
1 AAGAGCTGCATTTGTGTCTGCAATAAATGCTAGATCACAACTGATCGAATCATGTAACAGGACGC
73515840 TCGCA
66 TCGCA
73515845 AAGAGCTGCATTTGTGTCTGCAATAAATGCTAGATCACAACTGATCGAATCATGTAACAGGACGC
1 AAGAGCTGCATTTGTGTCTGCAATAAATGCTAGATCACAACTGATCGAATCATGTAACAGGACGC
73515910 TCGCA
66 TCGCA
73515915 AAGAGCTGC
1 AAGAGCTGC
73515924 GACAATGCAC
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 79 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (70 bp):
AAGAGCTGCATTTGTGTCTGCAATAAATGCTAGATCACAACTGATCGAATCATGTAACAGGACGC
TCGCA
Found at i:73521927 original size:33 final size:32
Alignment explanation
Indices: 73521880--73521967 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 32
73521870 CTGTTACTGT
*
73521880 ATAGGGCTAGGGCCCAGATTGTACTGATACTAA
1 ATAGGGCTA-GGCCCAGACTGTACTGATACTAA
*
73521913 ATAGGGCTTAGGCCCAGACTGTACTGATACTGA
1 ATAGGGC-TAGGCCCAGACTGTACTGATACTAA
*
73521946 ATAGAGCCTAGGCCCAGACTGT
1 ATAG-GGCTAGGCCCAGACTGT
73521968 GTTATTCACT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 46 0.92
34 4 0.08
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (32 bp):
ATAGGGCTAGGCCCAGACTGTACTGATACTAA
Found at i:73525912 original size:30 final size:30
Alignment explanation
Indices: 73525834--73525913 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 30
73525824 AGCTTCGGCT
* *
73525834 ATCAAATTATGAAAAGGGGTGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGAAGACC
* ** *
73525864 ATCGAACAATGAACAGGGATGGTGAAGACC
1 ATCAAATTATGAAAAGGGATGGTGAAGACC
*
73525894 ATCAAATTATTAAAAGGGAT
1 ATCAAATTATGAAAAGGGAT
73525914 AGCTCCAGTT
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.20
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGAAGACC
Found at i:73531964 original size:42 final size:42
Alignment explanation
Indices: 73531907--73532071 Score: 208
Period size: 42 Copynumber: 3.9 Consensus size: 42
73531897 ACATTAGGGT
* *
73531907 TATGAG-TTTACGTGTAAGACCATATCTGAGATATGGCATCGT
1 TATGAGATTT-CGTGTAAGACCATATCTGGGATATGGCATCGA
*
73531949 TATGAGATTTCGTGTAAGACCATATCTGGGACATGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
* * *
73531991 TATGAGA-ATCGTGTAAGACCATAGCTGGGTTATTGGCATCGA
1 TATGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGA
* ** *
73532033 TATAAGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
73532072 TGGTATGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
41 21 0.20
42 63 0.59
43 23 0.21
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGA
Found at i:73535457 original size:28 final size:28
Alignment explanation
Indices: 73535395--73535491 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
73535385 TATTAAGTCT
*
73535395 GCACACTCAGTGCTATATAATC-AACTC
1 GCACACTTAGTGCTATATAATCAAACTC
73535422 GCACACTTAGTGCTATATAATCAAACTC
1 GCACACTTAGTGCTATATAATCAAACTC
* * * *
73535450 GCACACTTAGTGCTGTACAATTTAAACCC
1 GCACACTTAGTGCTATATAA-TCAAACTC
73535479 GCACACTTAGTGC
1 GCACACTTAGTGC
73535492 CAATCTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
GCACACTTAGTGCTATATAATCAAACTC
Found at i:73542476 original size:15 final size:15
Alignment explanation
Indices: 73542456--73542485 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73542446 ATTATGAAAG
73542456 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
73542471 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
73542486 GAGTTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:73543388 original size:35 final size:35
Alignment explanation
Indices: 73543348--73543506 Score: 167
Period size: 35 Copynumber: 4.5 Consensus size: 35
73543338 GTATGTACAT
73543348 ATGTGATGATATATTGAACTTGTATATTTGTCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGTCCAC
* * * * *
73543383 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGTCCAC
* * * * *
73543418 ATGTGATGTTTTATTGAGCTTGTATATTCGAT-CAT
1 ATGTGATGATATATTGAACTTGTATATTTG-TCCAC
* * * *
73543453 ATATGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGTCCAC
*
73543488 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
73543507 CTTGAGTATT
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
35 99 1.00
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGTCCAC
Found at i:73549257 original size:17 final size:17
Alignment explanation
Indices: 73549235--73549284 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
73549225 AAAGGAGAAG
*
73549235 AATAGAATAGAAAGGAA
1 AATAGAAAAGAAAGGAA
*
73549252 AATAGAAGAGAAA-GAA
1 AATAGAAAAGAAAGGAA
*
73549268 AAGAGGAAAAGAAAGGA
1 AATA-GAAAAGAAAGGA
73549285 TAGGGGTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 20 0.71
18 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.28, T:0.06
Consensus pattern (17 bp):
AATAGAAAAGAAAGGAA
Found at i:73586013 original size:68 final size:67
Alignment explanation
Indices: 73585938--73586223 Score: 259
Period size: 68 Copynumber: 4.3 Consensus size: 67
73585928 CATCCCGTAT
73585938 CACACATGTGACCTAGCTACCACATAGTATCTCGTAGCTCTCTTGTAC-ACATGATGTGCACTTA
1 CACACATGTGACCTAGCTACCACAT-GTATCTCGTAGCTCTCTTGT-CTACATGATGTGCACTTA
73586002 GCAC
64 GCAC
* * * * * *
73586006 CATACATGTGACCTAG---CCAC-TTTATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 CACACATGTGACCTAGCTACCACATGTATCTCGTAGCTCTCTTGTCTACATGATG---TGCACTT
*
73586067 AGAAC
63 AGCAC
* * * * * * * **
73586072 CACACATGCGACCTAGCT---ACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACA-TCCCG
1 CACACATGTGACCTAGCTACCACATGTATCTCGTAGCTCTCTTGTCTACATGATGTGCACT-TAG
* *
73586133 TAT
65 CAC
73586136 CACACATGTGACCTAGCTACCACATAGTATCTCGTAGCTCTCTTGTAC-ACATGATGTGCACTTA
1 CACACATGTGACCTAGCTACCACAT-GTATCTCGTAGCTCTCTTGT-CTACATGATGTGCACTTA
73586200 GCAC
64 GCAC
*
73586204 CATACATGTGACCTAGCTAC
1 CACACATGTGACCTAGCTAC
73586224 ATACCATCTA
Statistics
Matches: 173, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 25 0.14
64 23 0.13
65 4 0.02
66 25 0.14
67 31 0.18
68 62 0.36
69 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (67 bp):
CACACATGTGACCTAGCTACCACATGTATCTCGTAGCTCTCTTGTCTACATGATGTGCACTTAGC
AC
Found at i:73586112 original size:67 final size:67
Alignment explanation
Indices: 73585828--73586122 Score: 309
Period size: 67 Copynumber: 4.4 Consensus size: 67
73585818 AAGAAGACAC
*
73585828 TTTATCCCGTAGCTCTCTTATCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTA
1 TTTATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTA
73585893 CA
66 CA
* * * * * * *
73585895 TTTATCCCGTAGCTTTCTTGTCTACATGGTATACATC-CC--GTATCACACATGTGACCTAGCTA
1 TTTATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCT-
73585957 CCACA
65 --ACA
* * * * * * * *
73585962 TAGTATCTCGTAGCTCTCTTGTAC-ACATGATG---TGCACTTAGCACCATACATGTGACCTAGC
1 T-TTATCCCGTAGCTCTCTTGT-CTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGC
*
73586023 CAC-
64 TACA
* *
73586026 TTTATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTA
1 TTTATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTA
73586091 CA
66 CA
*
73586093 TTTATCCCGTAGCTTTCTTGTCTACATGGT
1 TTTATCCCGTAGCTCTCTTGTCTACATGGT
73586123 ATACATCCCG
Statistics
Matches: 183, Mismatches: 32, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 25 0.14
64 20 0.11
65 3 0.02
66 29 0.16
67 63 0.34
68 41 0.22
69 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.33
Consensus pattern (67 bp):
TTTATCCCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAGCTA
CA
Found at i:73586163 original size:198 final size:198
Alignment explanation
Indices: 73585825--73586220 Score: 765
Period size: 198 Copynumber: 2.0 Consensus size: 198
73585815 GGGAAGAAGA
*
73585825 CACTTTATCCCGTAGCTCTCTTATCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAG
1 CACTTTATCCCATAGCTCTCTTATCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAG
73585890 CTACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACATCCCGTATCACACATGTGACCTAGC
66 CTACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACATCCCGTATCACACATGTGACCTAGC
73585955 TACCACATAGTATCTCGTAGCTCTCTTGTACACATGATGTGCACTTAGCACCATACATGTGACCT
131 TACCACATAGTATCTCGTAGCTCTCTTGTACACATGATGTGCACTTAGCACCATACATGTGACCT
73586020 AGC
196 AGC
* *
73586023 CACTTTATCTCATAGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAG
1 CACTTTATCCCATAGCTCTCTTATCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAG
73586088 CTACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACATCCCGTATCACACATGTGACCTAGC
66 CTACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACATCCCGTATCACACATGTGACCTAGC
73586153 TACCACATAGTATCTCGTAGCTCTCTTGTACACATGATGTGCACTTAGCACCATACATGTGACCT
131 TACCACATAGTATCTCGTAGCTCTCTTGTACACATGATGTGCACTTAGCACCATACATGTGACCT
73586218 AGC
196 AGC
73586221 TACATACCAT
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
198 195 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (198 bp):
CACTTTATCCCATAGCTCTCTTATCTACATGGTGTCCTTCACCTAGAACCACACATGCGACCTAG
CTACATTTATCCCGTAGCTTTCTTGTCTACATGGTATACATCCCGTATCACACATGTGACCTAGC
TACCACATAGTATCTCGTAGCTCTCTTGTACACATGATGTGCACTTAGCACCATACATGTGACCT
AGC
Found at i:73588246 original size:28 final size:28
Alignment explanation
Indices: 73588214--73588317 Score: 104
Period size: 28 Copynumber: 3.8 Consensus size: 28
73588204 TTTGGTCCTT
*
73588214 TTAGGCCCAATCTCACTCATATGGCCCA
1 TTAGGCCCAATCACACTCATATGGCCCA
**
73588242 TTAGGCCCAAATCACTTTCATATGGCCCA
1 TTAGGCCC-AATCACACTCATATGGCCCA
* * *
73588271 -TCGACCC-ATCACATTCATATGGCCCA
1 TTAGGCCCAATCACACTCATATGGCCCA
* * *
73588297 TCAGCCCCAATCACATTCATA
1 TTAGGCCCAATCACACTCATA
73588318 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 18 0.28
27 4 0.06
28 25 0.39
29 17 0.27
ACGTcount: A:0.28, C:0.36, G:0.12, T:0.25
Consensus pattern (28 bp):
TTAGGCCCAATCACACTCATATGGCCCA
Found at i:73588288 original size:26 final size:28
Alignment explanation
Indices: 73588219--73588317 Score: 121
Period size: 26 Copynumber: 3.6 Consensus size: 28
73588209 TCCTTTTAGG
* * * *
73588219 CCCAATCTCACTCATATGGCCCATTAGG
1 CCCAATCACATTCATATGGCCCATCAGA
*
73588247 CCCAAATCACTTTCATATGGCCCATC-GA
1 CCC-AATCACATTCATATGGCCCATCAGA
*
73588275 CCC-ATCACATTCATATGGCCCATCAGC
1 CCCAATCACATTCATATGGCCCATCAGA
73588302 CCCAATCACATTCATA
1 CCCAATCACATTCATA
73588318 GTCATGCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
26 20 0.33
27 4 0.07
28 19 0.31
29 18 0.30
ACGTcount: A:0.28, C:0.37, G:0.10, T:0.24
Consensus pattern (28 bp):
CCCAATCACATTCATATGGCCCATCAGA
Found at i:73588399 original size:17 final size:18
Alignment explanation
Indices: 73588377--73588410 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73588367 TGCCTACTAT
73588377 GGGCCC-TATAGCCCATC
1 GGGCCCATATAGCCCATC
*
73588394 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
73588411 TCTTGCCCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.18, C:0.38, G:0.24, T:0.21
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:73601248 original size:19 final size:19
Alignment explanation
Indices: 73601216--73601261 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
73601206 ACAACATATA
* * *
73601216 ATAATGTCACATTATTTAC
1 ATAATATCAAATTATTCAC
73601235 ATAATATCAAATTATTCAC
1 ATAATATCAAATTATTCAC
73601254 ATATATAT
1 ATA-ATAT
73601262 ACTTACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (19 bp):
ATAATATCAAATTATTCAC
Found at i:73603846 original size:15 final size:15
Alignment explanation
Indices: 73603826--73603879 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
73603816 GTAAATAAAT
*
73603826 CCAAGATAGAGAAAC
1 CCAAGATAAAGAAAC
*
73603841 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAC
* * *
73603856 CCAAAATAAAAAAAAA
1 CCAAGAT-AAAGAAAC
73603872 CCAAGATA
1 CCAAGATA
73603880 CGATACTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.63, C:0.17, G:0.11, T:0.09
Consensus pattern (15 bp):
CCAAGATAAAGAAAC
Found at i:73608955 original size:46 final size:46
Alignment explanation
Indices: 73608905--73609080 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73608895 TGGTTGAGCA
73608905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73608951 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73608996 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73609044 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73609081 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73609061 original size:93 final size:93
Alignment explanation
Indices: 73608902--73609073 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73608892 GGATGGTTGA
* *
73608902 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73608967 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73608995 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73609060 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73609074 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73615748 original size:46 final size:46
Alignment explanation
Indices: 73615698--73615873 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73615688 TGGTTGAGCA
73615698 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73615744 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73615789 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73615837 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73615874 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73615854 original size:93 final size:93
Alignment explanation
Indices: 73615695--73615866 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73615685 GGATGGTTGA
* *
73615695 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73615760 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73615788 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73615853 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73615867 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.