Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 218 of 362
Found at i:73624576 original size:12 final size:12
Alignment explanation
Indices: 73624559--73624584 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73624549 TTAAAATCCT
73624559 AAAAACACTCTC
1 AAAAACACTCTC
73624571 AAAAACACTCTC
1 AAAAACACTCTC
73624583 AA
1 AA
73624585 GAGGGAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAACACTCTC
Found at i:73627147 original size:39 final size:39
Alignment explanation
Indices: 73627103--73627339 Score: 393
Period size: 39 Copynumber: 6.1 Consensus size: 39
73627093 ATGCAAGACA
73627103 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* ** *
73627142 CTGGAAATATATTTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73627181 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73627220 CTGGAAATATATCCGGGCAAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
73627259 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGGTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73627298 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73627337 CTG
1 CTG
73627340 ATAATATAAT
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 182 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:73636466 original size:40 final size:40
Alignment explanation
Indices: 73636352--73636532 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
73636342 TACTCGAATG
* *
73636352 ATATCC-GGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGAC-
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGCGACT
73636391 -TATCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGCGACT
* *
73636429 ACATCCGGACTAAGATCCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAAGCGACT
* * *
73636469 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAAGCGACT
* *
73636509 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
73636533 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
37 14 0.11
38 13 0.10
39 20 0.16
40 70 0.56
41 8 0.06
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGCGACT
Found at i:73636551 original size:79 final size:80
Alignment explanation
Indices: 73636391--73636568 Score: 193
Period size: 80 Copynumber: 2.3 Consensus size: 80
73636381 GCTAAGTGAC
* * * *
73636391 TATCCGGGCTAAGT-CCGAAGGCTTTGTGCTAAGCGACTACATCCGGACTAAGATCCGAAGGCAT
1 TATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGCAC
*
73636455 TTGTGCTAGCGACTA
66 TTGTGCGAGCGACTA
* * **
73636470 TATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGTTAAGACCCGAAGGC-
1 TATCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGCA
* **
73636533 CTTGTGCGAGTGGTTA
65 CTTGTGCGAGCGACTA
**
73636549 TATCC-GGCTAAACCCCGAAG
1 TATCCGGGCTAAGTCCCGAAG
73636569 ATGCTTGATT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 13 0.16
79 30 0.36
80 33 0.40
81 7 0.08
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGCGACCACATCCGGACTAAGACCCGAAGGCAC
TTGTGCGAGCGACTA
Found at i:73644489 original size:40 final size:39
Alignment explanation
Indices: 73644418--73644602 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 39
73644408 TACTCGAATG
*
73644418 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGCGACT
*
73644459 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
73644499 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
73644539 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
* *
73644579 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
73644603 CTTGTGCGAG
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.75
41 32 0.24
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:73644559 original size:81 final size:81
Alignment explanation
Indices: 73644420--73644572 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 81
73644410 CTCGAATGAT
* * *
73644420 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCTTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCATT
*
73644485 TGTGCTAAGCGACTAC
66 TATGCTAAGCGACTAC
73644501 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGT-CCGAAGGCA
73644564 TTTATGCTA
64 TTTATGCTA
73644573 GTGACCATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
80 22 0.33
81 43 0.65
82 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (81 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCATT
TATGCTAAGCGACTAC
Found at i:73646453 original size:28 final size:28
Alignment explanation
Indices: 73646413--73646476 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
73646403 TGTACTAGAG
*
73646413 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
73646441 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
73646469 TACCCCTA
1 TACCCCTA
73646477 GGGTTAACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:73646623 original size:28 final size:27
Alignment explanation
Indices: 73646583--73646663 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
73646573 GGAAACGTCC
* *
73646583 TGGTGGCTA-TGCCATAAATTATCTGTTT
1 TGGTGGC-ACTGCCACAAA-TATCTGTTA
* **
73646611 TGGTGGCCCTGCCACGTATATCTGTTA
1 TGGTGGCACTGCCACAAATATCTGTTA
73646638 TGGTGGCACTGCCACAAAATATCTGT
1 TGGTGGCACTGCCAC-AAATATCTGT
73646664 ATCTAGTGAC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (27 bp):
TGGTGGCACTGCCACAAATATCTGTTA
Found at i:73648697 original size:22 final size:22
Alignment explanation
Indices: 73648647--73648702 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
73648637 TTTATAATAC
73648647 ATTAAATA-AAACTATATTATTA
1 ATTAAATATAAA-TATATTATTA
* *
73648669 CTAAAATATAAATATATTATTA
1 ATTAAATATAAATATATTATTA
73648691 ATTAAAT-TAAAT
1 ATTAAATATAAAT
73648703 TAAAATAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 5 0.17
22 21 0.72
23 3 0.10
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTAAATATAAATATATTATTA
Found at i:73650607 original size:15 final size:15
Alignment explanation
Indices: 73650589--73650671 Score: 55
Period size: 15 Copynumber: 5.4 Consensus size: 15
73650579 GCTTAGAAAT
73650589 TTATTTGTATGTTAA
1 TTATTTGTATGTTAA
*
73650604 TTATTTGCATGTT-A
1 TTATTTGTATGTTAA
*
73650618 TT-TTAT-TACTTTATATA
1 TTATT-TGTA-TGT-TA-A
*
73650635 TTAATTGTATGTTAA
1 TTATTTGTATGTTAA
* *
73650650 ATATTTGTATATTAA
1 TTATTTGTATGTTAA
73650665 TATATTT
1 T-TATTT
73650672 AATTTAACGA
Statistics
Matches: 51, Mismatches: 9, Indels: 15
0.68 0.12 0.20
Matches are distributed among these distances:
13 3 0.06
14 6 0.12
15 26 0.51
16 7 0.14
17 6 0.12
18 3 0.06
ACGTcount: A:0.30, C:0.02, G:0.08, T:0.59
Consensus pattern (15 bp):
TTATTTGTATGTTAA
Found at i:73654060 original size:29 final size:29
Alignment explanation
Indices: 73654013--73654070 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
73654003 ACAAAACATA
* * *
73654013 TTCAACTACCTTTATCCTATACATGCCAT
1 TTCAACTACCTCTAGCCTAGACATGCCAT
73654042 TTCAACTACCTCTAGCCTAGACATGCCAT
1 TTCAACTACCTCTAGCCTAGACATGCCAT
73654071 ACTCCAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.33
Consensus pattern (29 bp):
TTCAACTACCTCTAGCCTAGACATGCCAT
Found at i:73654583 original size:43 final size:43
Alignment explanation
Indices: 73654517--73654673 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 43
73654507 AGCTCGTACA
*
73654517 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * *
73654560 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAATATCG
* * *
73654602 ATGCCGATGTCCCAGACATGGTCTTACATGTAAATCACAA-GTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCA-AATATCG
73654646 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
73654674 CGATAACACA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
42 29 0.30
43 39 0.40
44 30 0.31
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
Found at i:73662170 original size:42 final size:43
Alignment explanation
Indices: 73662091--73662193 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
73662081 TCCCAGACGT
* * * *
73662091 GGTCTTACATGTAATTAAATATCGATGCCACTGTCCTAGACAA
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACAA
** *
73662134 GGTCTTACACGAAATCAAATA-CGATGCCGGTGTCCTAAACAT
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACAA
*
73662176 GGTCTTAAACGTAAATCA
1 GGTCTTACACG-AAATCA
73662194 CAAGTTGATG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCTAAACAA
Found at i:73664262 original size:44 final size:45
Alignment explanation
Indices: 73664213--73664338 Score: 123
Period size: 44 Copynumber: 2.8 Consensus size: 45
73664203 TATATACGTA
*
73664213 CTGATGCATGTCCCGGACATGTCTTACACTAGCACAAC-TCTTA-G
1 CTGATGCATGTCCCGGACATGTCTTACACTAGCACAACGTC-GAGG
** * * *
73664257 CTGATGCATGTCCCATACACGTCTGACACTAGCTATCATCGTCGAGG
1 CTGATGCATGTCCCGGACATGTCTTACACTAGC-A-CAACGTCGAGG
* *
73664304 CCGATGCATGTCCCAGG-CATGTCTTACACTGGCAC
1 CTGATGCATGTCCC-GGACATGTCTTACACTAGCAC
73664339 TCATCTCTAT
Statistics
Matches: 65, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
44 29 0.45
45 2 0.03
46 5 0.08
47 29 0.45
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
CTGATGCATGTCCCGGACATGTCTTACACTAGCACAACGTCGAGG
Found at i:73664333 original size:47 final size:44
Alignment explanation
Indices: 73664215--73664427 Score: 167
Period size: 47 Copynumber: 4.6 Consensus size: 44
73664205 TATACGTACT
* * *
73664215 GATGCATGTCCCGGACATGTCTTACACTAGCA-CAACTCTTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTC-TAGCC
* * * *
73664259 GATGCATGTCCCATACACGTCTGACACTAGCTATCATCGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ATCATC-TCTA-GCC
* *
73664306 GATGCATGTCCCAGGCATGTCTTACACTGGCACTCATCTCTATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCTA-GCC
* * * * * *
73664352 GATTCCATGTCCTAGACATGGTCTTACACTGGCACTCATAATGTGGCC
1 GA-TGCATGTCCCAGACAT-GTCTTACACTAGCA-TCAT-CTCTAGCC
* * *
73664400 AATGCATGTTCCAGAGATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
73664428 GGCACATAAG
Statistics
Matches: 136, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
44 27 0.20
45 1 0.01
46 23 0.17
47 60 0.44
48 23 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTAGCC
Found at i:73670841 original size:47 final size:47
Alignment explanation
Indices: 73670643--73670951 Score: 217
Period size: 47 Copynumber: 6.6 Consensus size: 47
73670633 CCTTATGCGT
* *
73670643 ATGTCCCAGACATGGTTTTACACT-GCTA-TCCTCATCGAGGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGC-ACTCATCATCGAGGCCGATGC
* * * * * * *
73670690 GATATCCCAAACATGGTCTTATACTAGCTCTCGTAT-ATACG-TGCTGAT-C
1 -ATGTCCCAGACAT-GTCTTACACTGGCACTC--ATCAT-CGAGGCCGATGC
* * * * * **
73670739 ATTTCCCAGACATGTCTTACTCTAGCA--CAACTTTTA-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCCGATGC
*
73670783 ATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGC-ACTCATCATCGAGGCCGATGC
* * * *
73670830 ATGTCCTAGACATGTCTTACATTGGCACTCATC-TCTACGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCCGATG-C
* * * * *
73670877 ATGTCCTAAACATGGTCTTACACTGGCACTCATAAT-GGGGCCGATGT
1 ATGTCCCAGACAT-GTCTTACACTGGCACTCATCATCGAGGCCGATGC
73670924 ATGTCCCAGACATGTCTTACACTGGCAC
1 ATGTCCCAGACATGTCTTACACTGGCAC
73670952 ACAAGAAATC
Statistics
Matches: 206, Mismatches: 40, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.03
44 24 0.12
45 2 0.01
46 31 0.15
47 71 0.34
48 56 0.27
49 6 0.03
50 7 0.03
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTGGCACTCATCATCGAGGCCGATGC
Found at i:73670920 original size:94 final size:93
Alignment explanation
Indices: 73670742--73670951 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 93
73670732 GCTGATCATT
* * * * *
73670742 TCCCAGACATGTCTTACTCTAGCA--CAACTTTTA-GCCGATGCATGTCCCAGACACGTCTTACA
1 TCCCAGACATGTCTTACACTGGCACTCATC-TCTACGCCGATGCATGTCCCAAACACGTCTTACA
*
73670804 CTGGCTATCATCATCGAGGCCGATGCATG
65 CTGGCTATCATAATCGAGGCCGATGCATG
* * * *
73670833 TCCTAGACATGTCTTACATTGGCACTCATCTCTACGCCGATGCCATGTCCTAAACATGGTCTTAC
1 TCCCAGACATGTCTTACACTGGCACTCATCTCTACGCCGATG-CATGTCCCAAACA-CGTCTTAC
* *
73670898 ACTGGC-ACTCATAAT-GGGGCCGATGTATG
64 ACTGGCTA-TCATAATCGAGGCCGATGCATG
73670927 TCCCAGACATGTCTTACACTGGCAC
1 TCCCAGACATGTCTTACACTGGCAC
73670952 ACAAGAAATC
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
91 20 0.20
92 3 0.03
93 10 0.10
94 47 0.47
95 19 0.19
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
TCCCAGACATGTCTTACACTGGCACTCATCTCTACGCCGATGCATGTCCCAAACACGTCTTACAC
TGGCTATCATAATCGAGGCCGATGCATG
Found at i:73674625 original size:25 final size:25
Alignment explanation
Indices: 73674588--73674657 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
73674578 GCCCATTTTC
* *
73674588 ACAGCTCGCGTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACAGATTT
* *
73674613 ACAGCTCATGTGAGCATATAGATTT
1 ACAGCTCGTGTGAGCATACAGATTT
*
73674638 ACATCTCGTGTGAGCATACA
1 ACAGCTCGTGTGAGCATACA
73674658 TGTACAGGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACAGATTT
Found at i:73677738 original size:24 final size:25
Alignment explanation
Indices: 73677691--73677738 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
73677681 TTGATTTGAA
*
73677691 TGTTAATTGAGTGAAATATGATATT
1 TGTTAATTGAGTGAAATATCATATT
* *
73677716 TGTTAATT-ATTGAACTATCATAT
1 TGTTAATTGAGTGAAATATCATAT
73677739 GTAGCTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (25 bp):
TGTTAATTGAGTGAAATATCATATT
Found at i:73679265 original size:30 final size:30
Alignment explanation
Indices: 73679229--73679286 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
73679219 AAAAGTAAAT
73679229 ATATTTGAAAGATGAATCCTTGTTGAAAAC
1 ATATTTGAAAGATGAATCCTTGTTGAAAAC
73679259 ATATTTGAAAGATGAATCCTTGTTGAAA
1 ATATTTGAAAGATGAATCCTTGTTGAAA
73679287 TGATTGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (30 bp):
ATATTTGAAAGATGAATCCTTGTTGAAAAC
Found at i:73680149 original size:25 final size:25
Alignment explanation
Indices: 73680108--73680212 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 25
73680098 GTCATTAGGG
*
73680108 TTACCGA-TTTCAGCTCATGAGAGC
1 TTACCGATTTTCAACTCATGAGAGC
*
73680132 TTACCGATTTTCAGCTCAT-ATGAGC
1 TTACCGATTTTCAACTCATGA-GAGC
73680157 TTACCGATTTTCAACTCATGAGAGC
1 TTACCGATTTTCAACTCATGAGAGC
*
73680182 ATACC---TTTCAACTCATGAGAGC
1 TTACCGATTTTCAACTCATGAGAGC
*
73680204 ATACCGATT
1 TTACCGATT
73680213 CATAGCTCGT
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
22 22 0.30
24 8 0.11
25 42 0.58
26 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (25 bp):
TTACCGATTTTCAACTCATGAGAGC
Found at i:73680193 original size:22 final size:22
Alignment explanation
Indices: 73680165--73680208 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
73680155 GCTTACCGAT
73680165 TTTCAACTCATGAGAGCATACC
1 TTTCAACTCATGAGAGCATACC
73680187 TTTCAACTCATGAGAGCATACC
1 TTTCAACTCATGAGAGCATACC
73680209 GATTCATAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (22 bp):
TTTCAACTCATGAGAGCATACC
Found at i:73682754 original size:30 final size:29
Alignment explanation
Indices: 73682718--73682776 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
73682708 TTTTAATCCT
* *
73682718 ACACCATATTATGCACCATCATCAACCTTG
1 ACACCATATTATACACC-CCATCAACCTTG
73682748 ACACCATATTATACACCCCATCAACCTTG
1 ACACCATATTATACACCCCATCAACCTTG
73682777 TAACATCTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.34, C:0.36, G:0.05, T:0.25
Consensus pattern (29 bp):
ACACCATATTATACACCCCATCAACCTTG
Found at i:73684045 original size:48 final size:48
Alignment explanation
Indices: 73683974--73684103 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
73683964 AACTCTCGTA
* * * * *
73683974 TAAGACCATATCTAGGATATGGCTTTAGCAGTGA-CATGTGATCCCATG
1 TAAGACCATGTCTGGGACATGGCTTTAGCA-TCATCATGTAATCCCATG
* * *
73684022 TAAGACCATGTTTGGGACATGGCTTTGGCATCATTATGTAATCCCATG
1 TAAGACCATGTCTGGGACATGGCTTTAGCATCATCATGTAATCCCATG
* * *
73684070 TAAGACCATGTCCGGGACATGGCATTGGCATCAT
1 TAAGACCATGTCTGGGACATGGCTTTAGCATCAT
73684104 AATGAGACAT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
47 2 0.03
48 68 0.97
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCTTTAGCATCATCATGTAATCCCATG
Found at i:73684217 original size:48 final size:48
Alignment explanation
Indices: 73684009--73684240 Score: 174
Period size: 48 Copynumber: 4.9 Consensus size: 48
73683999 TAGCAGTGAC
* * *
73684009 ATGTGATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCATCATT
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATT
** * *
73684057 ATGTAATCCCATGTAAGACCATGTCCGGGACATGGCATTGGCATCATA
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATT
* * * * * *
73684105 ATG-AGACATCGTGTAAGACCATAG-CTGGG-C-T---ATCGGCGTCGA-T
1 ATGTGGTC-CCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATC-ATT
** *
73684148 ATGTGTGATCCCATAAAAGACCATGTCTGGGACATGGCATTGGCATCGTT
1 ATGTG-G-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATT
* * * * *
73684198 ATGTGGTCTCATGCAAGACCATCTCTAGGATATGGCATTGGCA
1 ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
73684241 CCCTACCTTG
Statistics
Matches: 143, Mismatches: 28, Indels: 26
0.73 0.14 0.13
Matches are distributed among these distances:
43 10 0.07
44 2 0.01
45 16 0.11
46 3 0.02
47 4 0.03
48 93 0.65
49 2 0.01
50 13 0.09
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (48 bp):
ATGTGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATT
Found at i:73687938 original size:45 final size:45
Alignment explanation
Indices: 73687887--73687976 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
73687877 AAATTGGTGT
*
73687887 GGAATGCCTTTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
1 GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
*
73687932 GGAATGCCTCTAAATAGTGTAACAAATAGATGTGCAATAGGATGA
1 GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
73687977 CTTTATAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (45 bp):
GGAATGCCTCTAAATAGTGTAACAAATAAATGTGCAATAGGATGA
Found at i:73690696 original size:46 final size:44
Alignment explanation
Indices: 73690553--73690765 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 44
73690543 ATTGTGAGCT
* * *
73690553 AGTGTAAGACATGTTTGGGACATGCATCGACACATC-ATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-C-TCGA-GACGAGTC
* * *
73690598 AGTGTAGGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT-C
73690645 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGTC
* * *
73690692 AGTGTAAGACATGTCTGGGACATGAATTGG-CTACGAGA--TGT-
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGTC
* *
73690733 TGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
73690766 ACAGATATGC
Statistics
Matches: 140, Mismatches: 16, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
41 8 0.06
42 15 0.11
43 5 0.04
45 13 0.09
46 65 0.46
47 23 0.16
48 11 0.08
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGTC
Found at i:73702087 original size:37 final size:36
Alignment explanation
Indices: 73702037--73702114 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 36
73702027 TTATTACGAA
* *
73702037 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATC-G
*
73702074 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
73702110 GTCTT
1 GTCTT
73702115 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 6 0.16
37 29 0.78
38 2 0.05
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:73702311 original size:47 final size:47
Alignment explanation
Indices: 73702233--73702692 Score: 762
Period size: 47 Copynumber: 9.7 Consensus size: 47
73702223 CCCTTCGGGA
* * * * * *
73702233 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73702280 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73702327 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73702374 CTTATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73702419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73702466 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73702513 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73702560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73702607 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73702656 CTTATCACATATATATACATGTTCACATCCATCACAT
1 CTTATCACATATATACAC-T-TTCACATTCATCACAT
73702693 AGAATCCTAA
Statistics
Matches: 391, Mismatches: 16, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
45 45 0.12
47 283 0.72
48 1 0.00
49 62 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73702547 original size:186 final size:187
Alignment explanation
Indices: 73702233--73702692 Score: 760
Period size: 186 Copynumber: 2.4 Consensus size: 187
73702223 CCCTTCGGGA
* * * * * * * *
73702233 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73702298 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73702363 GGCCATTAGGCCTTATCACATATAT-ACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGC
73702419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
73702484 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73702549 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATA-ACTTTCACATTCATCACATCGGCCATTAGGC
*
73702607 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73702672 ACATGTTCACATCCATCACAT
64 AC-T-TTCACATTCATCACAT
73702693 AGAATCCTAA
Statistics
Matches: 256, Mismatches: 12, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
186 145 0.57
188 39 0.15
190 56 0.22
191 1 0.00
192 15 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (187 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATAACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73702729 original size:141 final size:139
Alignment explanation
Indices: 73702233--73702692 Score: 726
Period size: 139 Copynumber: 3.3 Consensus size: 139
73702223 CCCTTCGGGA
* * * * * * * *
73702233 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATATACTTTCACATTCATCACATCGG-CA-TAGGCCTTATCACATATATACAC
73702298 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73702363 GGCCATTAGGC
129 GGCCATTAGGC
73702374 CTTATCAC--ATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATATACTTTCACATTCATCACATCGG-CA-TAGGCCTTATCACATATATACAC
73702437 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
73702502 GGCTATTAGGC
129 GGCCATTAGGC
73702513 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATATACTTTCACATTCATCACATCGG-CA-TAGGCCTTATCACATATATACAC
73702578 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
73702643 TCGGCCATTAGGC
127 TCGGCCATTAGGC
*
73702656 CTTATCACATATATATACATGTTCACATCCATCACAT
1 CTTATCACATATATATAC-T-TTCACATTCATCACAT
73702693 AGAATCCTAA
Statistics
Matches: 301, Mismatches: 12, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
139 129 0.43
141 100 0.33
143 56 0.19
144 1 0.00
145 15 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATATACTTTCACATTCATCACATCGGCATAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGC
Found at i:73714447 original size:42 final size:43
Alignment explanation
Indices: 73714388--73714503 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
73714378 GTCTGAACTT
* * * * * *
73714388 GTTGAGTGGTCTGAGTTCGTGA-GATATGTG-GCATTCGAGCTC
1 GTTGAGAGGTCTGAGTTCATGATG-GATGCGAGCATTCAACCTC
*
73714430 GTTGAGAGGTCTGAGTTCATTATGGATGCGAGCATTCAACCTC
1 GTTGAGAGGTCTGAGTTCATGATGGATGCGAGCATTCAACCTC
*
73714473 GTTGAGAGGTCTGAGTTCATAATGGATGCGA
1 GTTGAGAGGTCTGAGTTCATGATGGATGCGA
73714504 TTTATGTAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 23 0.36
43 41 0.64
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.31
Consensus pattern (43 bp):
GTTGAGAGGTCTGAGTTCATGATGGATGCGAGCATTCAACCTC
Found at i:73714477 original size:43 final size:43
Alignment explanation
Indices: 73714418--73714503 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
73714408 GAGATATGTG
* * *
73714418 GCATTCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCGA
1 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
73714461 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
1 GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
73714504 TTTATGTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATTCAACCTCGTTGAGAGGTCTGAGTTCATAATGGATGCGA
Found at i:73716470 original size:23 final size:23
Alignment explanation
Indices: 73716444--73716487 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
73716434 TGAAAAAATA
* *
73716444 ATTAAATGTTAAATTTCATGTCT
1 ATTAAATGTGAAATTACATGTCT
*
73716467 ATTATATGTGAAATTACATGT
1 ATTAAATGTGAAATTACATGT
73716488 GTGAAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.45
Consensus pattern (23 bp):
ATTAAATGTGAAATTACATGTCT
Found at i:73718876 original size:48 final size:48
Alignment explanation
Indices: 73718812--73718959 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
73718802 TTGATGTACA
*
73718812 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
73718860 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** *
73718908 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
73718956 AGAT
1 AGAT
73718960 GTGTATATAT
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:73722085 original size:35 final size:31
Alignment explanation
Indices: 73722026--73722105 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 31
73722016 AAGGTATGCA
*
73722026 TATATACAATATATATATGCATGGG-CTTTGT
1 TATATATAATATATATATGCATGGGTC-TTGT
73722057 TATATATAATATATATATGCAGATATGGGTCTTGT
1 TATATATAATATATATATGC----ATGGGTCTTGT
*
73722092 TTTATATAATATAT
1 TATATATAATATAT
73722106 TTGTATATGG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
31 19 0.45
35 22 0.52
36 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (31 bp):
TATATATAATATATATATGCATGGGTCTTGT
Found at i:73722338 original size:17 final size:18
Alignment explanation
Indices: 73722312--73722349 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
73722302 TGTGAGCCAA
*
73722312 TTATATTTGTGTACCGTG
1 TTATATTTGTGAACCGTG
73722330 TTATA-TTGTGAACCGTG
1 TTATATTTGTGAACCGTG
73722347 TTA
1 TTA
73722350 ACTTGACGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.21, C:0.11, G:0.21, T:0.47
Consensus pattern (18 bp):
TTATATTTGTGAACCGTG
Found at i:73722384 original size:36 final size:36
Alignment explanation
Indices: 73722344--73722424 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
73722334 ATTGTGAACC
**
73722344 GTGTTAACTTGA-CGAATTATATTATTATGGTGAATT
1 GTGTTAA-TTGAGCGAATTATATTAAGATGGTGAATT
* * * *
73722380 GTGTTAATTTAGTGATTTGTATTAAGATGGTGAATT
1 GTGTTAATTGAGCGAATTATATTAAGATGGTGAATT
73722416 GTGTTAATT
1 GTGTTAATT
73722425 TGGTGATTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.08
36 35 0.92
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.47
Consensus pattern (36 bp):
GTGTTAATTGAGCGAATTATATTAAGATGGTGAATT
Found at i:73722394 original size:18 final size:18
Alignment explanation
Indices: 73722357--73722462 Score: 97
Period size: 18 Copynumber: 5.9 Consensus size: 18
73722347 TTAACTTGAC
*
73722357 GAATTATATT-ATTATGGT
1 GAATTGTATTAATT-TGGT
* *
73722375 GAATTGTGTTAATTTAGT
1 GAATTGTATTAATTTGGT
* **
73722393 GATTTGTATTAAGATGGT
1 GAATTGTATTAATTTGGT
*
73722411 GAATTGTGTTAATTTGGT
1 GAATTGTATTAATTTGGT
* * *
73722429 GATTTGTATTAATATGGA
1 GAATTGTATTAATTTGGT
*
73722447 GAACTGTATTAATTTG
1 GAATTGTATTAATTTG
73722463 CCAAACTGTG
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
18 65 0.96
19 3 0.04
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.47
Consensus pattern (18 bp):
GAATTGTATTAATTTGGT
Found at i:73722462 original size:36 final size:36
Alignment explanation
Indices: 73722363--73722462 Score: 146
Period size: 36 Copynumber: 2.8 Consensus size: 36
73722353 TGACGAATTA
* *
73722363 TATTATTATGGTGAATTGTGTTAATTTAGTGATTTG
1 TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
*
73722399 TATTAAGATGGTGAATTGTGTTAATTTGGTGATTTG
1 TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
* * *
73722435 TATTAATATGGAGAACTGTATTAATTTG
1 TATTAATATGGTGAATTGTGTTAATTTG
73722463 CCAAACTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.28, C:0.01, G:0.23, T:0.48
Consensus pattern (36 bp):
TATTAATATGGTGAATTGTGTTAATTTGGTGATTTG
Found at i:73733633 original size:28 final size:27
Alignment explanation
Indices: 73733576--73733727 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
73733566 TAAATTGTGC
*
73733576 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
73733603 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
73733631 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
73733658 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
73733686 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
73733713 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73733728 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:73733640 original size:55 final size:55
Alignment explanation
Indices: 73733576--73733727 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
73733566 TAAATTGTGC
*
73733576 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
73733631 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
73733686 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
73733728 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:73749359 original size:25 final size:24
Alignment explanation
Indices: 73749306--73749353 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
73749296 CAAGGTTAAT
73749306 CAAAGTTTAAATGGAAAACTAAAAA
1 CAAAGTTTAAATGGAAAAC-AAAAA
*
73749331 CAAAGTTTAACTGGAAAA-AAAAA
1 CAAAGTTTAAATGGAAAACAAAAA
73749354 TCCAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
25 17 0.77
ACGTcount: A:0.60, C:0.08, G:0.12, T:0.19
Consensus pattern (24 bp):
CAAAGTTTAAATGGAAAACAAAAA
Found at i:73753251 original size:46 final size:45
Alignment explanation
Indices: 73753081--73753253 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 45
73753071 TGTAACCCGC
* * *
73753081 CCATAAGTGAACTCGGACCCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
* * *
73753127 CCATAAGTGAACTCGGACTCGACTCAACGAGATCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* ***
73753173 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
73753220 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
73753254 ATCCTAGTGA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 62 0.60
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:73756725 original size:28 final size:27
Alignment explanation
Indices: 73756639--73756728 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
73756629 GTGACAGAGT
*
73756639 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
73756668 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
73756695 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
73756723 CACCAG
1 CACCAG
73756729 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:73756881 original size:28 final size:28
Alignment explanation
Indices: 73756834--73756895 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
73756824 AAATTAACCC
*
73756834 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
73756862 TAGGGGTATAACGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
73756890 TAGGGG
1 TAGGGG
73756896 CATTCTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:73762543 original size:42 final size:42
Alignment explanation
Indices: 73762464--73762552 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
73762454 ACAATTCGGA
* *
73762464 TATATATGTGGCACATAGTGTACGATTCAAGAAAGCTTCAGC
1 TATATATATGGCACATAGTGTACGATTCAAGAAAGCTTCAAC
* * **
73762506 TATATATATGGCACTTAGTGTGCGATT-TGGAATAGCTTCAAC
1 TATATATATGGCACATAGTGTACGATTCAAGAA-AGCTTCAAC
73762548 TATAT
1 TATAT
73762553 TTGGTACCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
41 3 0.08
42 37 0.93
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
TATATATATGGCACATAGTGTACGATTCAAGAAAGCTTCAAC
Found at i:73762606 original size:41 final size:43
Alignment explanation
Indices: 73762561--73762655 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 43
73762551 ATTTGGTACC
* *
73762561 TAGTGTGAGAGACCGA-GATAGCTTCGGCTATGTA-AGGCACT
1 TAGTGTGAGAGAACGATAATAGCTTCGGCTATGTATAGGCACT
* ** *
73762602 TAGTGTGA-AAAATTATAATAGCTTCGGCTATGTATTGGCACT
1 TAGTGTGAGAGAACGATAATAGCTTCGGCTATGTATAGGCACT
*
73762644 TAGTGTGTGAGA
1 TAGTGTGAGAGA
73762656 TACCGAGTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
40 3 0.07
41 25 0.58
42 13 0.30
43 2 0.05
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (43 bp):
TAGTGTGAGAGAACGATAATAGCTTCGGCTATGTATAGGCACT
Found at i:73765299 original size:42 final size:42
Alignment explanation
Indices: 73765235--73765439 Score: 275
Period size: 42 Copynumber: 4.9 Consensus size: 42
73765225 GTTACTTGGA
* * * *
73765235 AATCTCGCACACTAAGTGCCAATACGTAGCTGAAGCTAACTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
*
73765277 AATCACGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
*
73765319 AATCTTGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * *
73765361 GATCTTGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTT
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * * * * *
73765403 GATCTCACATACTAAGTGCCATTTCATAGCTGAAGCT
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCT
73765440 TCATCAAATA
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 148 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (42 bp):
AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
Found at i:73768617 original size:8 final size:8
Alignment explanation
Indices: 73768575--73768599 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73768565 ATATAGACTA
73768575 AATAAAAT
1 AATAAAAT
73768583 AATAAAAT
1 AATAAAAT
73768591 AATAAAAT
1 AATAAAAT
73768599 A
1 A
73768600 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:73768623 original size:29 final size:31
Alignment explanation
Indices: 73768572--73768640 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
73768562 TATATATAGA
*
73768572 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
73768601 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
73768632 CTAATTAAA
1 CTAATTAAA
73768641 TAACTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:73770626 original size:64 final size:64
Alignment explanation
Indices: 73770525--73770844 Score: 532
Period size: 64 Copynumber: 5.0 Consensus size: 64
73770515 TTCATGTATC
* *
73770525 ATGCTTATGCCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* *
73770589 ATGCTTATGTCAAATAATTAGGATGCTACGTTCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
73770653 ATGCTGATGTCAAATAATTAGGATGCTATAATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
73770717 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
* * * *
73770781 ATGCTTATGTCAAATAATTAGGACGTTATGATCGAAATGAATCAAATGCTCCTAACTATATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
73770845 TTATGAATGA
Statistics
Matches: 238, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 238 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:73773054 original size:16 final size:16
Alignment explanation
Indices: 73773033--73773066 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
73773023 CTCATTGACC
73773033 CTTCGTAAAGTAGGAT
1 CTTCGTAAAGTAGGAT
73773049 CTTCGTAAAGTAGGAT
1 CTTCGTAAAGTAGGAT
73773065 CT
1 CT
73773067 ATTTTTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (16 bp):
CTTCGTAAAGTAGGAT
Found at i:73776807 original size:119 final size:119
Alignment explanation
Indices: 73776645--73776872 Score: 293
Period size: 120 Copynumber: 1.9 Consensus size: 119
73776635 GGAAATACAC
* * *
73776645 GTAATATATTTACAAAACATATATATACATAAATAGATTTAGAAGCAATTATTTGTA-AAAATAA
1 GTAATAGATTTACAAAACATATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAATAA
*
73776709 CAT-GAAATTAATAATGCATATA-AGAGAAAATTAATTTTATCATGTATTATGTAT
66 CATAG-AATTAATAACGCATATAGA-AGAAAATTAATTTTATCATGTATTATGTAT
* * * *
73776763 GTAATAGATTTA-AAAACATGAATATGTATATGAATAGATTTAGAAGAAATTATATGTATAAGAT
1 GTAATAGATTTACAAAACAT--ATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAAT
* * *
73776827 AACATAGATTTAATAACGTATATAGAATAAAATTAATTTTATCATG
64 AACATAGAATTAATAACGCATATAGAAGAAAATTAATTTTATCATG
73776873 AACCATATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 7 0.07
118 11 0.12
119 32 0.34
120 42 0.45
121 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.11, T:0.36
Consensus pattern (119 bp):
GTAATAGATTTACAAAACATATATATACATAAATAGATTTAGAAGAAATTATATGTATAAAATAA
CATAGAATTAATAACGCATATAGAAGAAAATTAATTTTATCATGTATTATGTAT
Found at i:73778610 original size:27 final size:27
Alignment explanation
Indices: 73778386--73778725 Score: 242
Period size: 27 Copynumber: 12.8 Consensus size: 27
73778376 TATTACATCG
73778386 GTAATTTTACAAA-CTGA-GGTATTTC-
1 GTAATTTTACAAATC-GAGGGTATTTCA
*
73778411 GATAATTTTA-TAATCCGAGGGTATTTCA
1 G-TAATTTTACAAAT-CGAGGGTATTTCA
* * *
73778439 GTGATTTTACAAATCGAGAGTATTTCG
1 GTAATTTTACAAATCGAGGGTATTTCA
*
73778466 GTAATTTTAC-AATCTGAGGGTATTTCG
1 GTAATTTTACAAATC-GAGGGTATTTCA
* ** *
73778493 GTAATTTTAAAAATAAATGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
73778520 GTAATTTTACAAA-CTG-GGGATATTTC-
1 GTAATTTTACAAATC-GAGGG-TATTTCA
* ** **
73778546 GATAATTTTACAATTCGAAAGTATTTTG
1 G-TAATTTTACAAATCGAGGGTATTTCA
* *
73778574 GTGATTTTACAAATCGCGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* **
73778601 ATAATTTTAC-AA--GTTGGTATTTCTA
1 GTAATTTTACAAATCGAGGGTATTTC-A
* *
73778626 -TAATTTCACAAATCGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTCA
**
73778652 GTAATTTCCCAAATC-AGAGGTATTTCA
1 GTAATTTTACAAATCGAG-GGTATTTCA
* * *
73778679 GTAATTTTAC-AACCTGGGGGTATATCA
1 GTAATTTTACAAATC-GAGGGTATTTCA
*
73778706 GTAA-TTTACAAATTGAGGGT
1 GTAATTTTACAAATCGAGGGT
73778726 TTTAACGACC
Statistics
Matches: 247, Mismatches: 45, Indels: 45
0.73 0.13 0.13
Matches are distributed among these distances:
24 17 0.07
25 6 0.02
26 35 0.14
27 178 0.72
28 11 0.04
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:73779584 original size:17 final size:17
Alignment explanation
Indices: 73779562--73779598 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
73779552 ACCTGAACAA
73779562 CATAACATTCAATTAAT
1 CATAACATTCAATTAAT
73779579 CATAACATTCAATTAAT
1 CATAACATTCAATTAAT
73779596 CAT
1 CAT
73779599 TAATCAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (17 bp):
CATAACATTCAATTAAT
Found at i:73791005 original size:27 final size:27
Alignment explanation
Indices: 73790975--73791152 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
73790965 ATATTGAGCC
* * *
73790975 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
73791002 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
73791029 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
73791057 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
73791084 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
73791111 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
73791138 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73791153 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:73791068 original size:55 final size:55
Alignment explanation
Indices: 73790975--73791152 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
73790965 ATATTGAGCC
* * *
73790975 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
73791029 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
73791084 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
73791138 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73791153 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:73791114 original size:82 final size:81
Alignment explanation
Indices: 73790996--73791151 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
73790986 TGCTATACAA
* * *
73790996 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
73791061 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
73791078 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
73791142 CACTTAGTGC
65 CACTTAGTGC
73791152 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73798454 original size:68 final size:67
Alignment explanation
Indices: 73798406--73798530 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 67
73798396 AGACATTATG
* * * * *
73798406 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGGCAT
73798468 AT
66 AT
* *
73798470 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
73798531 AGATAAACTG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 20 0.38
65 4 0.08
66 2 0.04
67 26 0.50
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (67 bp):
ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGTAGACAAGAGAGCTACGGCAT
AT
Found at i:73806549 original size:57 final size:58
Alignment explanation
Indices: 73806424--73806551 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 58
73806414 CTCATTACAG
* * * * * *
73806424 AAAGGATTTAACCCAGATGGGTAATCTTGATATAAGTCCTCTTGAGCATATGTTATAT
1 AAAGGATTTAGCCCAGATGGGTAATCTAGATACAAGTCCTCTAGAGCATATGTCATAA
** *
73806482 ATTGGATTTAGCCCGGATGGGTAATCTAGAT-CAAGTTCCT-TAGAGCATATGTCATAA
1 AAAGGATTTAGCCCAGATGGGTAATCTAGATACAAG-TCCTCTAGAGCATATGTCATAA
73806539 AAAGGATTTAGCC
1 AAAGGATTTAGCC
73806552 TAGACCGGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
57 28 0.48
58 30 0.52
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (58 bp):
AAAGGATTTAGCCCAGATGGGTAATCTAGATACAAGTCCTCTAGAGCATATGTCATAA
Found at i:73813233 original size:24 final size:23
Alignment explanation
Indices: 73813127--73813294 Score: 108
Period size: 24 Copynumber: 7.0 Consensus size: 23
73813117 TTGAGCTATG
* *
73813127 AACAGTAAGCTCCTCCTGAGCTGA
1 AACAGTAAGCTCATAC-GAGCTGA
* *
73813151 TAGATAGTAAGCTC-TATTGAGCTGA
1 -A-ACAGTAAGCTCATA-CGAGCTGA
** *
73813176 AAGGGTAAGCT-TTGACGAGCTGA
1 AACAGTAAGCTCAT-ACGAGCTGA
*
73813199 ATCAGTAAGCTCATACGAGCTGA
1 AACAGTAAGCTCATACGAGCTGA
*
73813222 GAACAGTAAGCTCCA-ACAAGCTGAA
1 -AACAGTAAGCT-CATACGAGCTG-A
* *
73813247 AACAGTAAGCTCTTACAAGCTGA
1 AACAGTAAGCTCATACGAGCTGA
*
73813270 TATATCAGTAAGCTCATTCGAGCTG
1 -A-A-CAGTAAGCTCATACGAGCTG
73813295 TGGTGAGTCC
Statistics
Matches: 115, Mismatches: 16, Indels: 23
0.75 0.10 0.15
Matches are distributed among these distances:
23 35 0.30
24 40 0.35
25 13 0.11
26 27 0.23
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCATACGAGCTGA
Found at i:73849919 original size:17 final size:17
Alignment explanation
Indices: 73849882--73849921 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
73849872 TAAGGCTACA
* *
73849882 AAACTGAGACTGTAGGG
1 AAACTGAGACAGTAGCG
*
73849899 AAACTGAGACAGTAGCT
1 AAACTGAGACAGTAGCG
73849916 AAACTG
1 AAACTG
73849922 TGATTGCGCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.17
Consensus pattern (17 bp):
AAACTGAGACAGTAGCG
Found at i:73853171 original size:28 final size:29
Alignment explanation
Indices: 73853118--73853191 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
73853108 CACTTTGTGC
* * *
73853118 TATTCTGATGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTGGGATGGATTACAT
73853147 TATTCTGGTGTGTTTGGGA-GGATTACAT
1 TATTCTGGTGTGTTTGGGATGGATTACAT
* *
73853175 GATACTGGTGTGTTTGG
1 TATTCTGGTGTGTTTGG
73853192 ACATTTTGGC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.57
29 17 0.43
ACGTcount: A:0.18, C:0.05, G:0.31, T:0.46
Consensus pattern (29 bp):
TATTCTGGTGTGTTTGGGATGGATTACAT
Found at i:73855390 original size:26 final size:26
Alignment explanation
Indices: 73855361--73855537 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
73855351 ATATTGAGCC
* *
73855361 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
73855387 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
73855414 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
73855442 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
73855469 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
73855496 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
73855523 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73855538 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:73855418 original size:27 final size:27
Alignment explanation
Indices: 73855381--73855536 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
73855371 GTGCTATACA
* * *
73855381 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
73855408 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
73855435 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
73855463 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
73855490 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
73855517 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
73855537 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:73855453 original size:55 final size:55
Alignment explanation
Indices: 73855361--73855537 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
73855351 ATATTGAGCC
* * * *
73855361 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
73855414 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
73855469 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
73855523 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73855538 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:73855480 original size:82 final size:81
Alignment explanation
Indices: 73855381--73855536 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
73855371 GTGCTATACA
* * *
73855381 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
73855445 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
73855463 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
73855528 ACTTAGTGC
66 ACTTAGTGC
73855537 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73863500 original size:26 final size:26
Alignment explanation
Indices: 73863471--73863647 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
73863461 ATATTGAGCC
* *
73863471 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
73863497 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
73863524 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
73863552 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
73863579 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
73863606 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
73863633 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73863648 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:73863528 original size:27 final size:27
Alignment explanation
Indices: 73863491--73863646 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
73863481 GTGCTATACA
* * *
73863491 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
73863518 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
73863545 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
73863573 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
73863600 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
73863627 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
73863647 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:73863563 original size:55 final size:55
Alignment explanation
Indices: 73863471--73863647 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
73863461 ATATTGAGCC
* * * *
73863471 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
73863524 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
73863579 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
73863633 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73863648 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:73863590 original size:82 final size:81
Alignment explanation
Indices: 73863491--73863646 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
73863481 GTGCTATACA
* * *
73863491 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
73863555 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
73863573 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
73863638 ACTTAGTGC
66 ACTTAGTGC
73863647 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73870550 original size:46 final size:46
Alignment explanation
Indices: 73870500--73870672 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
73870490 TGGTTGAGCA
* * *
73870500 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
73870546 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
73870593 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
73870639 -CCTGAGCTCGTTGAGTTGAGTCCGAATTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
73870673 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 57 0.54
47 29 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:73870934 original size:19 final size:20
Alignment explanation
Indices: 73870897--73870934 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73870887 ATAAGGTGGT
73870897 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73870917 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73870935 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73879184 original size:33 final size:32
Alignment explanation
Indices: 73879147--73879242 Score: 104
Period size: 34 Copynumber: 2.9 Consensus size: 32
73879137 CTACGGGTCA
* *
73879147 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGT-T
1 TACTG-TATCTGAAAA-GGGCTTAGGCCCAGTAC
*
73879180 TACTGTATTCTGAAAAGGGCTTCGGCCCAGTACC
1 TACTGTA-TCTGAAAAGGGCTTAGGCCCAGTA-C
*
73879214 TACTGCTATCTGAATAGGGCTTAGGCCCA
1 TACTG-TATCTGAAAAGGGCTTAGGCCCA
73879243 ATGGGCTTGA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
32 15 0.28
33 13 0.24
34 24 0.44
35 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (32 bp):
TACTGTATCTGAAAAGGGCTTAGGCCCAGTAC
Found at i:73882397 original size:27 final size:27
Alignment explanation
Indices: 73882366--73882418 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
73882356 TACACTTAAG
*
73882366 TCATTTCTTGTCCTCAAGCAACACAAT
1 TCATTGCTTGTCCTCAAGCAACACAAT
73882393 TCATTGCTTGTCCTCAAGCAACACAA
1 TCATTGCTTGTCCTCAAGCAACACAA
73882419 ATAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.30
Consensus pattern (27 bp):
TCATTGCTTGTCCTCAAGCAACACAAT
Found at i:73884557 original size:43 final size:42
Alignment explanation
Indices: 73884414--73884569 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
73884404 TGTGATATCG
**
73884414 TGTAAGACCACGTCTGGGACATTGGCATCGAT-TCGGTATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTTG-A-TTACA
* * * * * * *
73884458 TTTAAGACTA-GTCTGGGACGTTGGCATCGTACTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
* *
73884499 TGTAACACC-CTGTCTGGGACAATGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATC-ATATTTGATTACA
73884542 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
73884570 TGCACAAGCT
Statistics
Matches: 87, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
41 9 0.10
42 18 0.21
43 51 0.59
44 9 0.10
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:73892250 original size:43 final size:43
Alignment explanation
Indices: 73892097--73892251 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
73892087 TGATATTGTA
*
73892097 TAAGACCACGTCTGGGATGTTGGCATCGAT-TTGGTATTTACGTG
1 TAAGACCACGTCTGGGATGTTGGCATCGATATTTG-A-TTACGTG
* * *
73892141 TAAAACCACGTCTGGGATGTTGGCATCG-TACTTGATTTCGTG
1 TAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACGTG
* *
73892183 TAAGACC-CTATCTGGGATAG-TGGCATCGATATTTGATTACATG
1 TAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATTACGTG
*
73892226 TAAGACCACGT-TCGGGACGTTGGCAT
1 TAAGACCACGTCT-GGGATGTTGGCAT
73892252 TGTACAATCT
Statistics
Matches: 93, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 32 0.34
44 30 0.32
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTACGTG
Found at i:73896984 original size:40 final size:40
Alignment explanation
Indices: 73896908--73896998 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
73896898 TAACTCATTC
* * *
73896908 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
** *
73896948 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
*
73896988 AAGGCCTTCGG
1 AATGCCTTCGG
73896999 ACCTTAGTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
Found at i:73906481 original size:26 final size:25
Alignment explanation
Indices: 73906444--73906501 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 25
73906434 ACACACCTTA
73906444 GCTCTTATGAGCATCCCGATTAAA-G
1 GCTCTTATGAGCATCCCG-TTAAATG
*
73906469 GCTCTTCATGAGCTTCCCGTTAAATTG
1 GCTCTT-ATGAGCATCCCGTTAAA-TG
73906496 GCTCTT
1 GCTCTT
73906502 TGTGAGCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 11 0.38
26 11 0.38
27 7 0.24
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (25 bp):
GCTCTTATGAGCATCCCGTTAAATG
Found at i:73906507 original size:27 final size:26
Alignment explanation
Indices: 73906444--73906516 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
73906434 ACACACCTTA
*
73906444 GCTCTT-ATGAGCATCCCGATTAAAG
1 GCTCTTCATGAGCTTCCCGATTAAAG
73906469 GCTCTTCATGAGCTTCCCG-TTAAATTG
1 GCTCTTCATGAGCTTCCCGATTAAA--G
** *
73906496 GCTCTTTGTGAGCTTCTCGAT
1 GCTCTTCATGAGCTTCCCGAT
73906517 AGTGCTCGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 11 0.28
26 11 0.28
27 17 0.43
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
GCTCTTCATGAGCTTCCCGATTAAAG
Found at i:73911203 original size:23 final size:23
Alignment explanation
Indices: 73911177--73911220 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
73911167 ATTGGTTTGG
*
73911177 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
73911200 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
73911221 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.27, T:0.39
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Found at i:73912144 original size:30 final size:30
Alignment explanation
Indices: 73912108--73912166 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
73912098 GGCATACATA
*
73912108 CACACACGGCCAATAGAGACACCCGTGTGC
1 CACACACGGCCAATAGACACACCCGTGTGC
73912138 CACACACGGCCAATAGACACACCCGTGTG
1 CACACACGGCCAATAGACACACCCGTGTG
73912167 TCTAAGCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.37, G:0.22, T:0.10
Consensus pattern (30 bp):
CACACACGGCCAATAGACACACCCGTGTGC
Found at i:73913276 original size:20 final size:20
Alignment explanation
Indices: 73913248--73913318 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
73913238 ATTCATTTCT
* *
73913248 ATTCGTATAAACAGTAATTC
1 ATTCATATAAACAGTAGTTC
* *
73913268 ATTCATATAACCAGTAGTGC
1 ATTCATATAAACAGTAGTTC
*
73913288 ATTCGTATAAACAGTAGTTC
1 ATTCATATAAACAGTAGTTC
73913308 A-TCTATATAAA
1 ATTC-ATATAAA
73913319 AACATATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 2 0.05
20 40 0.95
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.34
Consensus pattern (20 bp):
ATTCATATAAACAGTAGTTC
Found at i:73913383 original size:79 final size:79
Alignment explanation
Indices: 73913278--73913437 Score: 275
Period size: 79 Copynumber: 2.0 Consensus size: 79
73913268 ATTCATATAA
*
73913278 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATTTTATTCATATGATCAG
1 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
73913343 TAACAGGAATTATG
66 TAACAGGAATTATG
* * *
73913357 CCAGTAGTTCATTCGTATAAATAGTAGTTCATCTATATGAAAACATATCTTATTCATATGATCAG
1 CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
*
73913422 TAACAGTAATTATG
66 TAACAGGAATTATG
73913436 CC
1 CC
73913438 TGCTAAACCT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (79 bp):
CCAGTAGTGCATTCGTATAAACAGTAGTTCATCTATATAAAAACATATCTTATTCATATGATCAG
TAACAGGAATTATG
Found at i:73913609 original size:23 final size:23
Alignment explanation
Indices: 73913583--73913646 Score: 87
Period size: 22 Copynumber: 2.8 Consensus size: 23
73913573 AAAATTTATT
73913583 GAGCTGAAACGGTAAGCTCTAT-C
1 GAGCTGAAACGGTAAGCTC-ATGC
*
73913606 GAGCTG-AACAGTAAGCTCATGC
1 GAGCTGAAACGGTAAGCTCATGC
*
73913628 GAGCTAAAACGGTAAGCTC
1 GAGCTGAAACGGTAAGCTC
73913647 CAATAAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 2 0.06
22 17 0.47
23 17 0.47
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.19
Consensus pattern (23 bp):
GAGCTGAAACGGTAAGCTCATGC
Found at i:73913622 original size:22 final size:22
Alignment explanation
Indices: 73913565--73913646 Score: 67
Period size: 23 Copynumber: 3.6 Consensus size: 22
73913555 CTTGAGTTGA
** * *
73913565 TGAACAGTAAAATTTATTGAGC
1 TGAACAGTAAGCTCTATCGAGC
*
73913587 TGAAACGGTAAGCTCTATCGAGC
1 TG-AACAGTAAGCTCTATCGAGC
73913610 TGAACAGTAAGCTC-ATGCGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
* *
73913632 TAAAACGGTAAGCTC
1 T-GAACAGTAAGCTC
73913647 CAATAAGCTG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
21 2 0.04
22 19 0.39
23 28 0.57
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:73913873 original size:23 final size:24
Alignment explanation
Indices: 73913839--73913894 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
73913829 GCATTTAATG
*
73913839 ATCA-ATA-ATTCAATT-TATCAA
1 ATCATATACATTCAATTCAATCAA
*
73913860 ATCATATACATTCAATTCAATTAA
1 ATCATATACATTCAATTCAATCAA
73913884 AT-ATATACATT
1 ATCATATACATT
73913895 TAAATACTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 17 0.57
24 6 0.20
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.39
Consensus pattern (24 bp):
ATCATATACATTCAATTCAATCAA
Found at i:73920354 original size:25 final size:25
Alignment explanation
Indices: 73920320--73920395 Score: 98
Period size: 25 Copynumber: 3.0 Consensus size: 25
73920310 ATACCTAGAT
*
73920320 CTCACCACAAAGGTTTTACAGATAA
1 CTCACCACAAAGGATTTACAGATAA
** *
73920345 CTTGCCACAAAGGCTTTACAGATAA
1 CTCACCACAAAGGATTTACAGATAA
* *
73920370 ATCACCACAAAGGATTTATAGATAA
1 CTCACCACAAAGGATTTACAGATAA
73920395 C
1 C
73920396 ACAAAGGCTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (25 bp):
CTCACCACAAAGGATTTACAGATAA
Found at i:73920400 original size:20 final size:20
Alignment explanation
Indices: 73920375--73920415 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
73920365 GATAAATCAC
*
73920375 CACAAAGGATTTATAGATAA
1 CACAAAGGATCTATAGATAA
*
73920395 CACAAAGGCTCTATAGATAA
1 CACAAAGGATCTATAGATAA
73920415 C
1 C
73920416 TAACCATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.22
Consensus pattern (20 bp):
CACAAAGGATCTATAGATAA
Found at i:73925214 original size:14 final size:14
Alignment explanation
Indices: 73925195--73925272 Score: 77
Period size: 14 Copynumber: 5.4 Consensus size: 14
73925185 CAAAGATAAC
*
73925195 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
73925209 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
73925224 GAGAAACCCGAATA
1 AAGAAATCCGAATA
73925238 AAGAAATCCAGAATA
1 AAGAAATCC-GAATA
*
73925253 AAG-AATCCAGGATA
1 AAGAAATCC-GAATA
73925267 AAGAAA
1 AAGAAA
73925273 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 32 0.60
15 21 0.40
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:73925234 original size:29 final size:29
Alignment explanation
Indices: 73925195--73925281 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
73925185 CAAAGATAAC
*
73925195 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
73925224 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
73925253 AAGAATCCAGGATAAAGAAACCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
73925282 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
28 2 0.04
29 45 0.92
30 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:73929748 original size:13 final size:13
Alignment explanation
Indices: 73929730--73929754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73929720 CCAAGCACAC
73929730 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
73929743 GCCCGTGTCCCT
1 GCCCGTGTCCCT
73929755 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:73935104 original size:37 final size:37
Alignment explanation
Indices: 73935054--73935132 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73935044 TTATTACGAA
* * *
73935054 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73935091 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73935128 GTCTT
1 GTCTT
73935133 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73935362 original size:47 final size:47
Alignment explanation
Indices: 73935250--73935662 Score: 772
Period size: 47 Copynumber: 8.7 Consensus size: 47
73935240 GCCCTTCGGG
*
73935250 ACTTATCACATTCATCACATCGGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATC-GGCCATTAGGCCTTATCAC--ATATATAC
73935301 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935348 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935395 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935442 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935489 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935536 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT-ATAC
73935584 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73935631 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
73935663 ATTACTATCA
Statistics
Matches: 360, Mismatches: 1, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
47 275 0.76
48 47 0.13
49 18 0.05
50 16 0.04
51 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:73939222 original size:40 final size:40
Alignment explanation
Indices: 73939177--73939452 Score: 356
Period size: 40 Copynumber: 6.9 Consensus size: 40
73939167 CGAATACACG
* * * * *
73939177 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** * *
73939217 ACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
73939257 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
73939297 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73939337 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
73939377 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
73939417 TCGCTAGCATGAATGCTCTTC-GGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
73939453 TTAGTAACTC
Statistics
Matches: 208, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
39 15 0.07
40 193 0.93
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:73939306 original size:80 final size:80
Alignment explanation
Indices: 73939177--73939531 Score: 387
Period size: 80 Copynumber: 4.5 Consensus size: 80
73939167 CGAATACACG
* * * * * * * * * *
73939177 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
* *
73939242 TTTAGCACGGATATA
66 CTTAGCCCGGATATA
* * *
73939257 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATGCTCCTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
73939322 CTTAGCCCGGATATA
66 CTTAGCCCGGATATA
*
73939337 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
*
73939402 CTTAGCCCGGATACA
66 CTTAGCCCGGATATA
* ** * * *
73939417 TCGCTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GG
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGG
* *
73939479 ATCTTAGTCCGGATATGG
65 A-CTTAGCCCGGATAT-A
* * *
73939497 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGAACTTAGCCCGGA
73939532 CATCATTCGA
Statistics
Matches: 237, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
78 3 0.01
79 36 0.15
80 193 0.81
81 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
CTTAGCCCGGATATA
Found at i:73939409 original size:120 final size:119
Alignment explanation
Indices: 73939196--73939533 Score: 385
Period size: 120 Copynumber: 2.8 Consensus size: 119
73939186 TGATTACTCT
* * * * *** * *
73939196 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
*
73939261 TAGCACGAATGCTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATGCTCC
66 TAGCA-GAATGCTCTTCGGGACTTAGCCCGGACACATCACTAGCACGAATGCTCC
*
73939316 TCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
* * * *
73939381 TAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCT
66 TAGCA-GAATGCTCTTCGGGACTTAGCCCGGACACATCACTAGCACGAATGCTCC
* * * * * * **
73939436 TC-GGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTC
1 TCGGGACTTAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CATC
* *
73939499 ACTTAGCACAAAGC-CTTCGGGACTTAGCCCGGACA
64 AC-TAGCAGAATGCTCTTCGGGACTTAGCCCGGACA
73939534 TCATTCGAAT
Statistics
Matches: 187, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
119 56 0.30
120 126 0.67
121 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCAC
TAGCAGAATGCTCTTCGGGACTTAGCCCGGACACATCACTAGCACGAATGCTCC
Found at i:73939472 original size:40 final size:39
Alignment explanation
Indices: 73939192--73939531 Score: 335
Period size: 40 Copynumber: 8.5 Consensus size: 39
73939182 AGCATGATTA
* * * *
73939192 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
73939232 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTC-TTCGGACTTAGCCCGGATACATCACTAGCACGAATG
*
73939272 CTCTTCGGAACTTAGCCCGGACACATCACTAGCACGAATG
1 CTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATG
* * *
73939312 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATG
*
73939352 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGG-ACTTAGCCCGGATACATCACTAGCACGAATG
* *
73939392 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
73939432 CTCTTCGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
73939472 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
73939512 C-CTTCGGGACTTAGCCCGGA
1 CTCTTC-GGACTTAGCCCGGA
73939532 CATCATTCGA
Statistics
Matches: 255, Mismatches: 35, Indels: 20
0.82 0.11 0.06
Matches are distributed among these distances:
39 29 0.11
40 212 0.83
41 14 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:73939876 original size:29 final size:29
Alignment explanation
Indices: 73939837--73939915 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73939827 CTTAATAATC
*
73939837 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73939867 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73939896 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73939916 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73939958 original size:43 final size:43
Alignment explanation
Indices: 73939897--73939999 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
73939887 TGCATTTCAA
73939897 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73939940 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73939983 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
73940000 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:73941911 original size:37 final size:37
Alignment explanation
Indices: 73941861--73941939 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
73941851 TTATTACGAA
* * *
73941861 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73941898 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73941935 GTCTT
1 GTCTT
73941940 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:73942210 original size:47 final size:47
Alignment explanation
Indices: 73942057--73942419 Score: 683
Period size: 47 Copynumber: 7.7 Consensus size: 47
73942047 GCCCTTCGGG
*
73942057 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
73942107 ACTTTCACATTCATCACATCGGCCATTAGGCCTT-TCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942153 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942200 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942247 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942294 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942341 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73942388 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
73942420 ATACTATCAT
Statistics
Matches: 311, Mismatches: 1, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
46 42 0.14
47 232 0.75
48 4 0.01
49 29 0.09
50 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:73949643 original size:28 final size:29
Alignment explanation
Indices: 73949571--73949688 Score: 118
Period size: 28 Copynumber: 4.1 Consensus size: 29
73949561 TACCTATATA
* * *
73949571 TATATGGCCCACTAGGCCC-AATCTCTTT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
73949599 TAAAATATGGCCCATTAGGCCC-ATTCACATT
1 T---ATATGGCCCATTAGGCCCAAATCACATT
*
73949630 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
73949659 CATATGG-CCACTT-GGCCCAAATCACATT
1 TATATGGCCCA-TTAGGCCCAAATCACATT
73949687 TA
1 TA
73949689 CAATCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 37 0.49
29 15 0.20
31 24 0.32
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:73949963 original size:8 final size:8
Alignment explanation
Indices: 73949902--73949963 Score: 52
Period size: 8 Copynumber: 7.8 Consensus size: 8
73949892 GTAGCCAAAC
73949902 TTTCGGCT
1 TTTCGGCT
* *
73949910 TTTTGGCA
1 TTTCGGCT
73949918 TTTCGGCT
1 TTTCGGCT
* * *
73949926 TTTAGACA
1 TTTCGGCT
*
73949934 TTTCAGCT
1 TTTCGGCT
* *
73949942 TTTTGGCA
1 TTTCGGCT
73949950 TTTCGGCT
1 TTTCGGCT
73949958 TTTCGG
1 TTTCGG
73949964 GATTTGCCGA
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.10, C:0.19, G:0.23, T:0.48
Consensus pattern (8 bp):
TTTCGGCT
Found at i:73949968 original size:16 final size:16
Alignment explanation
Indices: 73949902--73949960 Score: 91
Period size: 16 Copynumber: 3.7 Consensus size: 16
73949892 GTAGCCAAAC
73949902 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
* *
73949918 TTTCGGCTTTTAGACA
1 TTTCGGCTTTTTGGCA
*
73949934 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
73949950 TTTCGGCTTTT
1 TTTCGGCTTTT
73949961 CGGGATTTGC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.10, C:0.19, G:0.20, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:73950643 original size:53 final size:51
Alignment explanation
Indices: 73950562--73950721 Score: 169
Period size: 52 Copynumber: 3.1 Consensus size: 51
73950552 CGGATTACAT
* * *
73950562 ATCATACCAATGTCATATCTCAGATATGGTCTTATACGGAATCACATTATCAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAA-CACA-TATCAC
* * * *
73950615 ATCACACCAATGCCATAGCCCAGCTATGGTCTTATACGGGAACGCGA-ATGAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATAC-GGAACAC-ATATCAC
** * *
73950667 ATTGTACCGATGCCATAGCTCAGCTATGGTCTTATACGGAAGCATATATCAC
1 ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAA-CACATATCAC
73950719 ATC
1 ATC
73950722 TTTTTCGTCA
Statistics
Matches: 87, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
51 5 0.06
52 43 0.49
53 34 0.39
54 5 0.06
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (51 bp):
ATCATACCAATGCCATAGCTCAGCTATGGTCTTATACGGAACACATATCAC
Found at i:73957546 original size:8 final size:8
Alignment explanation
Indices: 73957527--73957557 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
73957517 TTGATGAGAG
73957527 GATATGTAT
1 GATAT-TAT
73957536 GATATTAT
1 GATATTAT
73957544 GATATTAT
1 GATATTAT
73957552 GATATT
1 GATATT
73957558 GTTTCTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.77
9 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.48
Consensus pattern (8 bp):
GATATTAT
Found at i:73957765 original size:15 final size:15
Alignment explanation
Indices: 73957745--73957800 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
73957735 CGTACTTGGG
73957745 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73957760 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
73957775 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
73957790 TTTCTTTATTC
1 TTTCTTTATTC
73957801 GATTCTCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73960590 original size:46 final size:46
Alignment explanation
Indices: 73960523--73960789 Score: 166
Period size: 46 Copynumber: 5.8 Consensus size: 46
73960513 TATTTTGGCA
* *
73960523 TCCGAACTCATTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * *
73960569 TCCGAACTCATTGAGTTGAGTCGGAGTTC-GTGTAATGTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACT-T-ATGGATGCGA-ACG
* *
73960616 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * ** * * * *
73960662 TCCGAACTCGTTGAATTGATTTCGAGTTC-GTGAAATTTA-ACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
* * *
73960709 TCCGAATTCATTGAGTTGATTCCGAGTTCACTTATGGATACGAAC-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
73960754 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 TCC-GAACTCATTGAGTTGAGTCCGAGTTCACTTAT
73960790 CGGCAAGTTA
Statistics
Matches: 164, Mismatches: 46, Indels: 22
0.71 0.20 0.09
Matches are distributed among these distances:
45 4 0.02
46 92 0.56
47 66 0.40
48 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:73960689 original size:93 final size:92
Alignment explanation
Indices: 73960519--73960784 Score: 354
Period size: 93 Copynumber: 2.9 Consensus size: 92
73960509 CGGATATTTT
* * *
73960519 GGCATCCGAACTCATTGAGCTGAGTCCAAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
73960584 TTGAGTCGGAGTTCGTGTAATGTAACTA
66 TTGATTC-GAGTTCGTGAAATGTAACTA
* * *
73960612 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
73960677 TTGATTTCGAGTTCGTGAAATTTAACTA
66 TTGA-TTCGAGTTCGTGAAATGTAACTA
* * * * *
73960705 GGCATCCGAATTCATTGAGTTGATTCCGAGTTCACTTATGGATACGAAC-ACCTGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
*
73960769 GTTGAGTCCGAGTTCG
65 GTTGA-TTCGAGTTCG
73960785 CTTATCGGCA
Statistics
Matches: 152, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
92 2 0.01
93 148 0.97
94 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (92 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGATTCGAGTTCGTGAAATGTAACTA
Found at i:73963869 original size:57 final size:57
Alignment explanation
Indices: 73963773--73963909 Score: 134
Period size: 57 Copynumber: 2.4 Consensus size: 57
73963763 ATTCAACAGA
* * ** * * * *
73963773 ATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTA-AGGAGCT-TGATCTGG
1 ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGA-CTAT-ATCAGG
*
73963830 ATTACCCGTCTAGGCTAAATCCAATCTATAACATGTGCTCGAGAGGACTCATATCAGG
1 ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGACT-ATATCAGG
* *
73963888 ATTACCCATCTGGGCTAAATCC
1 ATTACCCGTCTAGGCTAAATCC
73963910 TGTTATGTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
57 36 0.55
58 29 0.44
59 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (57 bp):
ATTACCCGTCTAGGCTAAATCCAATCTATAACATATGCTCGAGAGGACTATATCAGG
Found at i:73965500 original size:11 final size:11
Alignment explanation
Indices: 73965484--73965508 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
73965474 GCATGTGATT
73965484 CTACGTAGCAA
1 CTACGTAGCAA
73965495 CTACGTAGCAA
1 CTACGTAGCAA
73965506 CTA
1 CTA
73965509 TGTATGGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (11 bp):
CTACGTAGCAA
Found at i:73968642 original size:10 final size:10
Alignment explanation
Indices: 73968627--73968651 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
73968617 TGGTCCATGT
73968627 GGTCCCAATG
1 GGTCCCAATG
73968637 GGTCCCAATG
1 GGTCCCAATG
73968647 GGTCC
1 GGTCC
73968652 GTAGGCCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.20
Consensus pattern (10 bp):
GGTCCCAATG
Found at i:73969104 original size:16 final size:17
Alignment explanation
Indices: 73969073--73969106 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
73969063 TTTTGGGCTT
73969073 AATGGGCCGAAACGGGCC
1 AATGGGCC-AAACGGGCC
73969091 AATGGGCC-AACGGGCC
1 AATGGGCCAAACGGGCC
73969107 CACTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.29, G:0.38, T:0.06
Consensus pattern (17 bp):
AATGGGCCAAACGGGCC
Found at i:73969405 original size:27 final size:26
Alignment explanation
Indices: 73969361--73969412 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73969351 CTCGCTGTAA
*
73969361 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73969388 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73969413 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73976234 original size:27 final size:26
Alignment explanation
Indices: 73976190--73976241 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73976180 CTCGCTGCAA
*
73976190 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73976217 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
73976242 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:73976318 original size:27 final size:26
Alignment explanation
Indices: 73976280--73976339 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
73976270 CCACATATAT
* *
73976280 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
73976306 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
73976333 ATATCTG
1 ATATCTG
73976340 GCAGCCTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:73987956 original size:43 final size:43
Alignment explanation
Indices: 73987836--73987958 Score: 192
Period size: 43 Copynumber: 2.9 Consensus size: 43
73987826 TCTGAATTCA
* * *
73987836 TTCACCGGCATTATAACCTGCTAGGCTCAAGGCCCGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCAAGGCCTGATATTAT
*
73987879 TTCACCTGCATTATAGCCTGCTAGGCTCAAGGCCTGATATTAT
1 TTCACCAGCATTATAGCCTGCTAGGCTCAAGGCCTGATATTAT
* *
73987922 TTCACCAGCATTATAGCCTACTAGGCTCGAGGCCTGA
1 TTCACCAGCATTATAGCCTGCTAGGCTCAAGGCCTGA
73987959 ATGGTACCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (43 bp):
TTCACCAGCATTATAGCCTGCTAGGCTCAAGGCCTGATATTAT
Found at i:73990199 original size:27 final size:26
Alignment explanation
Indices: 73990151--73990210 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
73990141 GCGAGGCTGC
* *
73990151 CAGATATTGTGACAAAGTCACCATATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
73990178 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
73990204 CAGATAT
1 CAGATAT
73990211 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Done.