Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 220 of 362
Found at i:74335863 original size:12 final size:12
Alignment explanation
Indices: 74335846--74335870 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74335836 ACCCAAAACC
74335846 CTTAGCCCAAAA
1 CTTAGCCCAAAA
74335858 CTTAGCCCAAAA
1 CTTAGCCCAAAA
74335870 C
1 C
74335871 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:74335973 original size:38 final size:38
Alignment explanation
Indices: 74335917--74336005 Score: 151
Period size: 38 Copynumber: 2.3 Consensus size: 38
74335907 AACCCTAATC
* *
74335917 CCACCTACTCCACTACCCTTGTTGGCCACCCACCTTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACATTGG
74335955 CCACCTACTCCACCACCCTTGTTGGCCACCCACATTGG
1 CCACCTACTCCACCACCCTTGTTGGCCACCCACATTGG
*
74335993 CCACCTACACCAC
1 CCACCTACTCCAC
74336006 TATGCCACCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.19, C:0.49, G:0.11, T:0.20
Consensus pattern (38 bp):
CCACCTACTCCACCACCCTTGTTGGCCACCCACATTGG
Found at i:74336733 original size:24 final size:25
Alignment explanation
Indices: 74336687--74336744 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
74336677 TATATTGTTG
74336687 TTATTATTATATTATTAAATATT-C
1 TTATTATTATATTATTAAATATTCC
**
74336711 TTATTATTACTATTATT-TTTATTCC
1 TTATTATTA-TATTATTAAATATTCC
74336736 TT-TTATTAT
1 TTATTATTAT
74336745 TGTTTATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 1 0.03
24 19 0.63
25 10 0.33
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (25 bp):
TTATTATTATATTATTAAATATTCC
Found at i:74337084 original size:22 final size:22
Alignment explanation
Indices: 74337044--74337085 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
74337034 TAACGTGCTA
* * *
74337044 TTATTACTATTTTTTTTATTTT
1 TTATTACCATTATTGTTATTTT
74337066 TTATTACCATTATTGTTATT
1 TTATTACCATTATTGTTATT
74337086 GTAATTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.69
Consensus pattern (22 bp):
TTATTACCATTATTGTTATTTT
Found at i:74338622 original size:23 final size:22
Alignment explanation
Indices: 74338556--74338622 Score: 89
Period size: 23 Copynumber: 3.0 Consensus size: 22
74338546 TGGCCAATTT
* **
74338556 ACATTAAATCCCAAAACCCATTT
1 ACATTAAACCCCAAAACCCA-AC
74338579 ACATTAAACCCCAAAACCCAAC
1 ACATTAAACCCCAAAACCCAAC
74338601 ACATTAAACACCCAAAACCCAA
1 ACATTAAAC-CCCAAAACCCAA
74338623 TAGCCTAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 9 0.22
23 31 0.77
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (22 bp):
ACATTAAACCCCAAAACCCAAC
Found at i:74340070 original size:117 final size:115
Alignment explanation
Indices: 74339735--74340062 Score: 375
Period size: 118 Copynumber: 2.8 Consensus size: 115
74339725 AAACGTATCG
* * *
74339735 TTATTAT-TATATATTAGTGCATATTTTTTATATGCGTACATGTATATATA-TATAGTAG-TGTT
1 TTATTATATATATATTAGTGTATA-TTTTTATATACGTATATGTATATATATTATAGTAGCT-TT
* * *
74339797 TTTCATTATTTTATTTTAATATTTTATTATATTTGCTTTTTTTTCATCGCAATA
64 TTT-ATTACTTTATTTTAATATTTTATTATATTTGC-TTTCTTGCATCGCAATA
* *
74339851 TTA-T-TATATATATTA--GTATATTTTTTTCATACGTATATGCATATATATATATAGTAGTGCT
1 TTATTATATATATATTAGTGTATATTTTTAT-ATACGTATATGTATATATAT-TATAGTA--G--
*
74339912 CTTTTTTATTACTTTATTTTAATATTTTATTATATTTGCTTTCTTGCATTGCAATA
60 CTTTTTTATTACTTTATTTTAATATTTTATTATATTTGCTTTCTTGCATCGCAATA
* * *
74339968 TTATTATATATATATAATAGTGTATATTTTTATGTACGTATATGTATATCTATTTTA-TAGCTTT
1 TTATTATATATATAT--TAGTGTATATTTTTATATACGTATATGTATATATATTATAGTAGCTTT
74340032 TTTATTACTTTATTTTAATATTTTTATTATA
64 TTTATTACTTTATTTTAATA-TTTTATTATA
74340063 CATGCTTTTT
Statistics
Matches: 182, Mismatches: 14, Indels: 31
0.80 0.06 0.14
Matches are distributed among these distances:
112 6 0.03
113 20 0.11
114 1 0.01
115 17 0.09
116 27 0.15
117 28 0.15
118 33 0.18
119 14 0.08
120 3 0.02
121 5 0.03
122 17 0.09
123 11 0.06
ACGTcount: A:0.29, C:0.07, G:0.08, T:0.57
Consensus pattern (115 bp):
TTATTATATATATATTAGTGTATATTTTTATATACGTATATGTATATATATTATAGTAGCTTTTT
TATTACTTTATTTTAATATTTTATTATATTTGCTTTCTTGCATCGCAATA
Found at i:74340090 original size:3 final size:3
Alignment explanation
Indices: 74340082--74340114 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
74340072 TGTATTTTGC
*
74340082 TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74340115 ACAATAGCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:74340231 original size:3 final size:3
Alignment explanation
Indices: 74340223--74340365 Score: 50
Period size: 3 Copynumber: 47.0 Consensus size: 3
74340213 CGTATTTCAA
* * * *
74340223 TAT TAT TAT TAT TAT TAT ATAG TAG TAT ATAT TTT TAT TACC TAT GTA-
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TA-T TAT -TAT
* * *
74340271 CAT GTAT ATAT ATAG TAT TAT T-T T-T TAAT TACT TTAT TAT TTT TAT
1 TAT -TAT -TAT -TAT TAT TAT TAT TAT T-AT TA-T T-AT TAT TAT TAT
* * *
74340317 TA- TAT T-T TAT TAT TCT T-T T-T TAT T-T TAA TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74340360 TAT TAT
1 TAT TAT
74340366 CATTGTTAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
2 15 0.14
3 69 0.64
4 23 0.21
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:74340317 original size:28 final size:29
Alignment explanation
Indices: 74340286--74340351 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
74340276 ATATATATAG
74340286 TATTATTTTTTAATTA-CTTTATTATTTT-
1 TATTATTTTTT-ATTATCTTTATTATTTTA
* *
74340314 TATTATATTTTATTATTCTTTTTTATTTTAA
1 TATTATTTTTTATTA-TCTTTATTATTTT-A
74340345 TATTATT
1 TATTATT
74340352 ACTATTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 4 0.13
28 10 0.32
29 11 0.35
31 6 0.19
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (29 bp):
TATTATTTTTTATTATCTTTATTATTTTA
Found at i:74340326 original size:10 final size:9
Alignment explanation
Indices: 74340303--74340365 Score: 56
Period size: 9 Copynumber: 6.9 Consensus size: 9
74340293 TTTTAATTAC
74340303 TTTATTATT
1 TTTATTATT
74340312 TTTATTATAT
1 TTTATTAT-T
74340322 TTTATTATT
1 TTTATTATT
*
74340331 CTTTTTTA-T
1 -TTTATTATT
*
74340340 TTTAATATT
1 TTTATTATT
* *
74340349 ATTACTATT
1 TTTATTATT
*
74340358 ATTATTAT
1 TTTATTAT
74340366 CATTGTTAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
8 5 0.11
9 25 0.56
10 15 0.33
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTATTATT
Found at i:74340848 original size:3 final size:3
Alignment explanation
Indices: 74340840--74340888 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
74340830 ACTTTGGATT
*
74340840 TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74340888 T
1 T
74340889 CATCTTGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:74352592 original size:40 final size:40
Alignment explanation
Indices: 74352531--74352777 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
74352521 CGGAATTTAG
* * * *
74352531 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
74352571 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
74352611 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
74352651 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
74352691 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
74352731 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
74352771 CCGGATA
1 CCGGATA
74352778 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:74355147 original size:88 final size:88
Alignment explanation
Indices: 74355038--74355244 Score: 342
Period size: 88 Copynumber: 2.4 Consensus size: 88
74355028 TTAAGCCACC
*
74355038 AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAGT
1 AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAAT
74355103 AAGGGAACAGATCAAAGACAGTG
66 AAGGGAACAGATCAAAGACAGTG
* * *
74355126 AGCCTTAACCCCCTAAGTAGTAGGGTAACAAGCTGAAAATTACAGATTTTATCACCCTAAGCAAT
1 AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAAT
* *
74355191 AGGGGAACAGATCGAAGACAGTG
66 AAGGGAACAGATCAAAGACAGTG
* *
74355214 AGCCTTAACCCCCTAAGCAGTAGGGGAACAG
1 AGCCTTAACCCCCTAAGTAGTAGGGTAACAG
74355245 ATCGAAGACA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 110 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCACCCTAAGCAAT
AAGGGAACAGATCAAAGACAGTG
Found at i:74355272 original size:88 final size:87
Alignment explanation
Indices: 74355180--74355552 Score: 437
Period size: 88 Copynumber: 4.2 Consensus size: 87
74355170 GATTTTATCA
* * * * * * *
74355180 CCCTAAGCAATAGGGGAACAGATCGAAGACAGT-GAGCCTTAACCCCCTAAGCAGTAGGGGAACA
1 CCCTAAGCAGTAGGGTAACAGATCGAA-A-ATTACAGTCTTATCACCCTAAGCAGTAGGGGAACA
74355244 GATCGAAGACAGTGAGCCTTAACC
64 GATCGAAGACAGTGAGCCTTAACC
* ** * * *
74355268 CCCTAAGCAGTAGGGTAACAGGTTAAAAATTACAGATTTTATCACCCTAAGTAGTAGGGGAGCAG
1 CCCTAAGCAGTAGGGTAACAGATCGAAAATTACAG-TCTTATCACCCTAAGCAGTAGGGGAACAG
*
74355333 ATCGAAGACAGTGAGCCTTAGCC
65 ATCGAAGACAGTGAGCCTTAACC
* * * *
74355356 CCCTAAGCAGTAGGGTAACA-AGCTGAAAATTACAGATCTTATCACCCTAAGCAGTAGAGTAGCA
1 CCCTAAGCAGTAGGGTAACAGATC-GAAAATTACAG-TCTTATCACCCTAAGCAGTAGGGGAACA
*
74355420 GATCGAAGAGAGTGAGCCTTAACC
64 GATCGAAGACAGTGAGCCTTAACC
* * *
74355444 CCTTAAGCAGTAGGGTAACAG-GCTGAAAATTACAAATCTTATCACCCTAAGCAGTAGGGGAACA
1 CCCTAAGCAGTAGGGTAACAGATC-GAAAATTAC-AGTCTTATCACCCTAAGCAGTAGGGGAACA
*
74355508 GATCGAAGACAGTGAGCTTTAACC
64 GATCGAAGACAGTGAGCCTTAACC
* *
74355532 TCCTAAGTAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGTAACAG
74355553 GCTGAAGGTC
Statistics
Matches: 246, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
86 2 0.01
87 3 0.01
88 240 0.98
89 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGTAACAGATCGAAAATTACAGTCTTATCACCCTAAGCAGTAGGGGAACAGA
TCGAAGACAGTGAGCCTTAACC
Found at i:74355285 original size:132 final size:132
Alignment explanation
Indices: 74355092--74355375 Score: 469
Period size: 132 Copynumber: 2.2 Consensus size: 132
74355082 GATCTTATCA
* *
74355092 CCCTAAGCAGTAAGGGAACAGATCAAAGACAGTGAGCCTTAACCCCCTAAGTAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGGAACAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAA
*
74355157 GCTGAAAATTACAGATTTTATCACCCTAAGCAATAGGGGAACAGATCGAAGACAGTGAGCCTTAA
66 GCTAAAAATTACAGATTTTATCACCCTAAGCAATAGGGGAACAGATCGAAGACAGTGAGCCTTAA
74355222 CC
131 CC
* *
74355224 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGGAACAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAA
* * * * *
74355289 GTTAAAAATTACAGATTTTATCACCCTAAGTAGTAGGGGAGCAGATCGAAGACAGTGAGCCTTAG
66 GCTAAAAATTACAGATTTTATCACCCTAAGCAATAGGGGAACAGATCGAAGACAGTGAGCCTTAA
74355354 CC
131 CC
*
74355356 CCCTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGGAACA
74355376 AGCTGAAAAT
Statistics
Matches: 141, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 141 1.00
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (132 bp):
CCCTAAGCAGTAGGGGAACAGATCAAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAA
GCTAAAAATTACAGATTTTATCACCCTAAGCAATAGGGGAACAGATCGAAGACAGTGAGCCTTAA
CC
Found at i:74355537 original size:44 final size:43
Alignment explanation
Indices: 74355092--74355552 Score: 280
Period size: 44 Copynumber: 10.5 Consensus size: 43
74355082 GATCTTATCA
*
74355092 CCCTAAGCAGTAAGGG-AACAGATCAAAGACAGTGAGCCTTAACC
1 CCCTAAGCAGT-AGGGTAACAGATCGAAGACAGTGAGCCTTAA-C
* * * * ** *
74355136 CCCTAAGTAGTAGGGTAACA-AGCTGAA-A-ATTACAGATTTTATC
1 CCCTAAGCAGTAGGGTAACAGATC-GAAGACAGT-GAG-CCTTAAC
* *
74355179 ACCCTAAGCAATAGGGGAACAGATCGAAGACAGTGAGCCTTAACC
1 -CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTAA-C
*
74355224 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACC
1 CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTAA-C
* * * * * ** *
74355268 CCCTAAGCAGTAGGGTAACAGGT-TAA-AAATTACAGATTTTATC
1 CCCTAAGCAGTAGGGTAACAGATCGAAGACAGT-GAG-CCTTAAC
* * * *
74355311 ACCCTAAGTAGTAGGGGAGCAGATCGAAGACAGTGAGCCTTAGCC
1 -CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTA-AC
* * * * *
74355356 CCCTAAGCAGTAGGGTAACA-AGCTGAA-A-ATTACAGATCTTATC
1 CCCTAAGCAGTAGGGTAACAGATC-GAAGACAGT-GAG-CCTTAAC
* * *
74355399 ACCCTAAGCAGTAGAGTAGCAGATCGAAGAGAGTGAGCCTTAAC
1 -CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTAAC
* * * ** *
74355443 CCCTTAAGCAGTAGGGTAACAG-GCTGAA-A-ATTACAAATCTTATC
1 CCC-TAAGCAGTAGGGTAACAGATC-GAAGACAGT--GAGCCTTAAC
* *
74355487 ACCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCTTTAAC
1 -CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTAAC
*
74355531 CTCCTAAGTAGTAGGGTAACAG
1 C-CCTAAGCAGTAGGGTAACAG
74355553 GCTGAAGGTC
Statistics
Matches: 315, Mismatches: 71, Indels: 62
0.70 0.16 0.14
Matches are distributed among these distances:
42 9 0.03
43 27 0.09
44 249 0.79
45 21 0.07
46 9 0.03
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGATCGAAGACAGTGAGCCTTAAC
Found at i:74355553 original size:88 final size:88
Alignment explanation
Indices: 74355224--74355558 Score: 526
Period size: 88 Copynumber: 3.8 Consensus size: 88
74355214 AGCCTTAACC
74355224 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
* * *
74355289 GTTAAAAATTACAGATTTTATCA
66 GCTGAAAATTACAGATCTTATCA
* * * *
74355312 CCCTAAGTAGTAGGGGAGCAGATCGAAGACAGTGAGCCTTAGCCCCCTAAGCAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
74355377 GCTGAAAATTACAGATCTTATCA
66 GCTGAAAATTACAGATCTTATCA
* * * * *
74355400 CCCTAAGCAGTAGAGTAGCAGATCGAAGAGAGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
*
74355465 GCTGAAAATTACAAATCTTATCA
66 GCTGAAAATTACAGATCTTATCA
* * *
74355488 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCTTTAACCTCCTAAGTAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
74355553 GCTGAA
66 GCTGAA
74355559 GGTCAAAACA
Statistics
Matches: 224, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 224 1.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (88 bp):
CCCTAAGCAGTAGGGGAACAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAGTAGGGTAACAG
GCTGAAAATTACAGATCTTATCA
Found at i:74355680 original size:45 final size:45
Alignment explanation
Indices: 74355616--74355741 Score: 193
Period size: 45 Copynumber: 2.8 Consensus size: 45
74355606 AATTACAAGC
74355616 CTTATCTCCCC-GAAGTTGCAGTGGAGCAGACTGAAGATAAG-GAAT
1 CTTAT-TCCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCGAAT
*
74355661 CTTATTCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
1 CTTATTCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
* *
74355706 CTTATTCCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 CTTATTCCCCTGAAGTTGCAGTGGAGCAGACTGAAG
74355742 CTATGAATTA
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
44 6 0.08
45 69 0.92
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (45 bp):
CTTATTCCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAAT
Found at i:74357379 original size:3 final size:3
Alignment explanation
Indices: 74357371--74357422 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
74357361 ATTTTATTCA
* * * *
74357371 ATT ATT ATT ATT ATT AAT AAT ATT ATT ATT GTT ATT ATT CTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
74357419 ATT A
1 ATT A
74357423 CCACCATTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:74357722 original size:12 final size:12
Alignment explanation
Indices: 74357695--74357822 Score: 88
Period size: 12 Copynumber: 10.9 Consensus size: 12
74357685 TTCACATATA
74357695 TATTATTATT--
1 TATTATTATTAC
74357705 TA-TATTATTAC
1 TATTATTATTAC
***
74357716 TATTATTAACGC
1 TATTATTATTAC
* *
74357728 TCTTATTATTGC
1 TATTATTATTAC
*
74357740 TATTATTATTCC
1 TATTATTATTAC
* *
74357752 TTTTACTATTAC
1 TATTATTATTAC
74357764 TATTATTATTAC
1 TATTATTATTAC
*
74357776 TATTATTACTATCC
1 TATTATTA-T-TAC
74357790 T-TT-TTATT-C
1 TATTATTATTAC
* *
74357799 TCATTTTTATTAA
1 T-ATTATTATTAC
74357812 TATTATTATTA
1 TATTATTATTA
74357823 TAATCTTATT
Statistics
Matches: 93, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
9 9 0.10
10 3 0.03
11 5 0.05
12 69 0.74
13 4 0.04
14 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:74357762 original size:18 final size:18
Alignment explanation
Indices: 74357739--74357793 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
74357729 CTTATTATTG
74357739 CTATTATTATTCCTTTTA
1 CTATTATTATTCCTTTTA
* *
74357757 CTATTACTATT-ATTATTA
1 CTATTATTATTCCTT-TTA
74357775 CTATTATTACTATCCTTTT
1 CTATTATTA-T-TCCTTTT
74357794 TATTCTCATT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 2 0.07
18 21 0.72
19 1 0.03
20 3 0.10
21 2 0.07
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.58
Consensus pattern (18 bp):
CTATTATTATTCCTTTTA
Found at i:74357779 original size:9 final size:9
Alignment explanation
Indices: 74357731--74357787 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
74357721 TTAACGCTCT
*
74357731 TATTATTGC
1 TATTATTAC
*
74357740 TATTATTAT
1 TATTATTAC
*
74357749 TCCTT-TTAC
1 T-ATTATTAC
* *
74357758 TATTACTAT
1 TATTATTAC
74357767 TATTATTAC
1 TATTATTAC
74357776 TATTATTAC
1 TATTATTAC
74357785 TAT
1 TAT
74357788 CCTTTTTATT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
8 2 0.05
9 33 0.89
10 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (9 bp):
TATTATTAC
Found at i:74357809 original size:36 final size:35
Alignment explanation
Indices: 74357730--74357821 Score: 107
Period size: 36 Copynumber: 2.6 Consensus size: 35
74357720 ATTAACGCTC
*
74357730 TTATTATTGCTATTATTATTCCTTTTACTATTACTA
1 TTATTATTACTATTATTATTCCTTTTA-TATTACTA
74357766 TTATTATTACTATTATTACTATCCTTTT-TATT-CTCA
1 TTATTATTACTATTATTA-T-TCCTTTTATATTACT-A
* *
74357802 TTTTTATTAATATTATTATT
1 TTATTATTACTATTATTATT
74357822 ATAATCTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
34 1 0.02
35 3 0.06
36 38 0.76
37 1 0.02
38 7 0.14
ACGTcount: A:0.26, C:0.12, G:0.01, T:0.61
Consensus pattern (35 bp):
TTATTATTACTATTATTATTCCTTTTATATTACTA
Found at i:74364576 original size:20 final size:19
Alignment explanation
Indices: 74364551--74364594 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
74364541 TACAGTGCTT
*
74364551 GTGAAAAAAACATGAGATTA
1 GTGAAAAAAACATGA-ATAA
**
74364571 GTGAAATGAACATGAATAA
1 GTGAAAAAAACATGAATAA
74364590 GTGAA
1 GTGAA
74364595 GTGAATTGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (19 bp):
GTGAAAAAAACATGAATAA
Found at i:74364594 original size:19 final size:20
Alignment explanation
Indices: 74364559--74364599 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
74364549 TTGTGAAAAA
*
74364559 AACATGAGATTAGTGAAATG
1 AACATGAGATAAGTGAAATG
*
74364579 AACATGA-ATAAGTGAAGTG
1 AACATGAGATAAGTGAAATG
74364598 AA
1 AA
74364600 TTGACTCGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.49, C:0.05, G:0.24, T:0.22
Consensus pattern (20 bp):
AACATGAGATAAGTGAAATG
Found at i:74366749 original size:17 final size:19
Alignment explanation
Indices: 74366729--74366770 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
74366719 AATAGCTTAG
*
74366729 AAAAAATTCA-TG-TATTA
1 AAAAAATTCATTGCAATTA
*
74366746 AAAAACTTCATTGCAATTA
1 AAAAAATTCATTGCAATTA
74366765 AAAAAA
1 AAAAAA
74366771 CAAAGATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 9 0.45
18 2 0.10
19 9 0.45
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (19 bp):
AAAAAATTCATTGCAATTA
Found at i:74366974 original size:17 final size:17
Alignment explanation
Indices: 74366954--74366991 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
74366944 AAAAATTAAA
74366954 TTAT-ATTAAAATATTT
1 TTATGATTAAAATATTT
*
74366970 CTTATGATTAAATTATTT
1 -TTATGATTAAAATATTT
74366988 TTAT
1 TTAT
74366992 TTCCTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
TTATGATTAAAATATTT
Found at i:74367002 original size:17 final size:16
Alignment explanation
Indices: 74366982--74367015 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
74366972 TATGATTAAA
74366982 TTATTTTTATTTCCTTT
1 TTATTTTTATTT-CTTT
*
74366999 TTATTTTTGTTTCTTT
1 TTATTTTTATTTCTTT
74367015 T
1 T
74367016 CTTTCTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (16 bp):
TTATTTTTATTTCTTT
Found at i:74367436 original size:19 final size:18
Alignment explanation
Indices: 74367408--74367444 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74367398 AATTATTATT
74367408 TTTTAGAATTTTTTTAAAA
1 TTTTAGAA-TTTTTTAAAA
*
74367427 TTTTATAATTTTTTAAAA
1 TTTTAGAATTTTTTAAAA
74367445 AATATAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTAGAATTTTTTAAAA
Found at i:74367445 original size:19 final size:19
Alignment explanation
Indices: 74367408--74367445 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
74367398 AATTATTATT
*
74367408 TTTTAGAATTTTTTTAAAA
1 TTTTAGAATTTTTTAAAAA
*
74367427 TTTTATAATTTTTTAAAAA
1 TTTTAGAATTTTTTAAAAA
74367446 ATATAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTAGAATTTTTTAAAAA
Found at i:74367455 original size:19 final size:19
Alignment explanation
Indices: 74367414--74367456 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
74367404 TATTTTTTAG
* * * *
74367414 AATTTTTTTAAAATTTTAT
1 AATTTTTTAAAAAATATAA
74367433 AATTTTTTAAAAAATATAA
1 AATTTTTTAAAAAATATAA
74367452 AATTT
1 AATTT
74367457 AGAATTTTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATTTTTTAAAAAATATAA
Found at i:74367475 original size:19 final size:18
Alignment explanation
Indices: 74367447--74367493 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
74367437 TTTTAAAAAA
74367447 TATAAAATTTAGAATTTT
1 TATAAAATTTAGAATTTT
74367465 TATAAATATTTAGAATTTT
1 TATAAA-ATTTAGAATTTT
74367484 T-TAAAATTTA
1 TATAAAATTTA
74367494 TTTTGATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.18
18 10 0.36
19 13 0.46
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
TATAAAATTTAGAATTTT
Found at i:74370809 original size:25 final size:23
Alignment explanation
Indices: 74370753--74370817 Score: 75
Period size: 19 Copynumber: 2.9 Consensus size: 23
74370743 TCTTATTTTT
74370753 TATTTGTTTTT-TATTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
*
74370772 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
74370795 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
74370818 GTTTTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
19 11 0.29
20 5 0.13
21 2 0.05
23 6 0.16
24 3 0.08
25 11 0.29
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:74373748 original size:16 final size:16
Alignment explanation
Indices: 74373720--74373752 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74373710 TCATTATCCA
74373720 ACAAATATTTAAATTT
1 ACAAATATTTAAATTT
74373736 ACAAA-ATTCTAAATTT
1 ACAAATATT-TAAATTT
74373752 A
1 A
74373753 ACACATTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (16 bp):
ACAAATATTTAAATTT
Found at i:74376213 original size:30 final size:29
Alignment explanation
Indices: 74376179--74376244 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
74376169 AATAGTGAAG
*
74376179 ATAAAATTGCACTTTAATCTCCTT-AAAATT
1 ATAAAATT-CAATTTAATC-CCTTAAAAATT
* *
74376209 ATAAAAATTTAATTTAATCCTTTAAAAATT
1 AT-AAAATTCAATTTAATCCCTTAAAAATT
74376239 ATAAAA
1 ATAAAA
74376245 ATATAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
29 7 0.23
30 18 0.58
31 6 0.19
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (29 bp):
ATAAAATTCAATTTAATCCCTTAAAAATT
Found at i:74382269 original size:28 final size:27
Alignment explanation
Indices: 74382213--74382269 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
74382203 AGAAACTAAA
* * *
74382213 AACAAACATTCAACTAAAAAGATTGAT
1 AACAAACATTCAACTAAAAAAAATCAT
74382240 AACAAATCATTCAACTAAAAAAAATCAT
1 AACAAA-CATTCAACTAAAAAAAATCAT
74382268 AA
1 AA
74382270 AACAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.60, C:0.16, G:0.04, T:0.21
Consensus pattern (27 bp):
AACAAACATTCAACTAAAAAAAATCAT
Found at i:74383189 original size:23 final size:23
Alignment explanation
Indices: 74383163--74383219 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
74383153 TTTTTGTACA
* *
74383163 TTTTTTATATTGTTCCACTATTG
1 TTTTTAATATTGTTCCACTATCG
* *
74383186 TTTTTAATATTGTTTCACTGTCG
1 TTTTTAATATTGTTCCACTATCG
74383209 TTTTTAATATT
1 TTTTTAATATT
74383220 ATTTGAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.19, C:0.11, G:0.09, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTGTTCCACTATCG
Found at i:74387885 original size:17 final size:15
Alignment explanation
Indices: 74387848--74387877 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74387838 TATAAATAGT
74387848 ACAAAAATATTAAAA
1 ACAAAAATATTAAAA
*
74387863 ACAAAACTATTAAAA
1 ACAAAAATATTAAAA
74387878 TAACAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (15 bp):
ACAAAAATATTAAAA
Found at i:74387936 original size:18 final size:18
Alignment explanation
Indices: 74387915--74387953 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74387905 AAATTACAAT
74387915 AAAAAT-AAAAATATTGTA
1 AAAAATGAAAAATATT-TA
*
74387933 AAAAATGAAATATATTTA
1 AAAAATGAAAAATATTTA
74387951 AAA
1 AAA
74387954 GCTATAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAATGAAAAATATTTA
Found at i:74388027 original size:29 final size:28
Alignment explanation
Indices: 74387956--74388048 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
74387946 ATTTAAAAGC
* * *
74387956 TATAGAAAATTATTAAAATTTCTATAAAA-
1 TATA-AAAAATATTAAAAATAC-ATAAAAT
74387985 TATAAAAAATATTATAAAA-AGCATAAAAT
1 TATAAAAAATATTA-AAAATA-CATAAAAT
*
74388014 TATAAAACAA-ATTAAAAATATATGAAAAT
1 TATAAAA-AATATTAAAAATACAT-AAAAT
74388043 TATAAA
1 TATAAA
74388049 GCTTATATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
28 21 0.39
29 31 0.57
30 2 0.04
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (28 bp):
TATAAAAAATATTAAAAATACATAAAAT
Found at i:74394811 original size:15 final size:16
Alignment explanation
Indices: 74394770--74394811 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
74394760 GAACCAAAGG
74394770 AAAATAAGAAAGCAGAA
1 AAAATAA-AAAGCAGAA
*
74394787 AAAATGAAAAGCAG-A
1 AAAATAAAAAGCAGAA
74394802 AAAATAAAAA
1 AAAATAAAAA
74394812 AAAAAGTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 7 0.30
17 6 0.26
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (16 bp):
AAAATAAAAAGCAGAA
Found at i:74394812 original size:16 final size:16
Alignment explanation
Indices: 74394770--74394812 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
74394760 GAACCAAAGG
*
74394770 AAAATAAGAAAGCAGA
1 AAAATAAAAAAGCAGA
*
74394786 AAAA-ATGAAAAGCAGA
1 AAAATA-AAAAAGCAGA
74394802 AAAATAAAAAA
1 AAAATAAAAAA
74394813 AAAAGTAGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (16 bp):
AAAATAAAAAAGCAGA
Found at i:74398305 original size:16 final size:15
Alignment explanation
Indices: 74398280--74398327 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
74398270 CTATTTTAAG
74398280 TTTATTTTAATTTTA
1 TTTATTTTAATTTTA
74398295 TTTATTTTTAATTATTA
1 TTTA-TTTTAATT-TTA
74398312 -TTATTTTAGATTTTA
1 TTTATTTTA-ATTTTA
74398327 T
1 T
74398328 ATTAATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 14 0.48
17 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTTAATTTTA
Found at i:74403567 original size:21 final size:22
Alignment explanation
Indices: 74403541--74403594 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
74403531 CGGCCTCTAG
**
74403541 CACGGGCGTGT-CCTAGGGTCA
1 CACGGGCGTGTCCCTAGGACCA
*
74403562 CACGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCTAGGACCA
74403584 CACGGGCGTGT
1 CACGGGCGTGT
74403595 GAGCCCTGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.13, C:0.31, G:0.37, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAGGACCA
Found at i:74405403 original size:19 final size:18
Alignment explanation
Indices: 74405381--74405418 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
74405371 TAAAACAATC
74405381 ACCACACTTACCAACACTT
1 ACCACACTTACC-ACACTT
*
74405400 ACCATACTTACCACACTT
1 ACCACACTTACCACACTT
74405418 A
1 A
74405419 TAAGAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (18 bp):
ACCACACTTACCACACTT
Found at i:74405408 original size:9 final size:9
Alignment explanation
Indices: 74405381--74405418 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
74405371 TAAAACAATC
74405381 ACCACACTT
1 ACCACACTT
74405390 ACCAACACTT
1 ACC-ACACTT
*
74405400 ACCATACTT
1 ACCACACTT
74405409 ACCACACTT
1 ACCACACTT
74405418 A
1 A
74405419 TAAGAAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 17 0.65
10 9 0.35
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (9 bp):
ACCACACTT
Found at i:74406875 original size:153 final size:153
Alignment explanation
Indices: 74406597--74406902 Score: 603
Period size: 153 Copynumber: 2.0 Consensus size: 153
74406587 TAAGCAATGG
74406597 CGATGTCGTACAACTAGAGCACCAATTGGAAACCCTCAGCCCCTTAATCTTCTTCTAAGCACAAA
1 CGATGTCGTACAACTAGAGCACCAATTGGAAACCCTCAGCCCCTTAATCTTCTTCTAAGCACAAA
*
74406662 ACAAGCCCCCATTAACCAACAATTTTGTAACCAAAACAATCACCACACTTACCATACTTATTAGA
66 ACAAGCCCCCATTAACCAACAATTCTGTAACCAAAACAATCACCACACTTACCATACTTATTAGA
74406727 AATGCTAAAGCCACACCAAAATA
131 AATGCTAAAGCCACACCAAAATA
74406750 CGATGTCGTACAACTAGAGCACCAATTGGAAACCCTCAGCCCCTTAATCTTCTTCTAAGCACAAA
1 CGATGTCGTACAACTAGAGCACCAATTGGAAACCCTCAGCCCCTTAATCTTCTTCTAAGCACAAA
74406815 ACAAGCCCCCATTAACCAACAATTCTGTAACCAAAACAATCACCACACTTACCATACTTATTAGA
66 ACAAGCCCCCATTAACCAACAATTCTGTAACCAAAACAATCACCACACTTACCATACTTATTAGA
74406880 AATGCTAAAGCCACACCAAAATA
131 AATGCTAAAGCCACACCAAAATA
74406903 ATGAGACAAG
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 152 1.00
ACGTcount: A:0.39, C:0.30, G:0.09, T:0.21
Consensus pattern (153 bp):
CGATGTCGTACAACTAGAGCACCAATTGGAAACCCTCAGCCCCTTAATCTTCTTCTAAGCACAAA
ACAAGCCCCCATTAACCAACAATTCTGTAACCAAAACAATCACCACACTTACCATACTTATTAGA
AATGCTAAAGCCACACCAAAATA
Found at i:74411841 original size:42 final size:42
Alignment explanation
Indices: 74411732--74411841 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
74411722 TACCGTATCA
* * * * *
74411732 ATGCCATATCTCGGATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAATATCATACCG
* * * *
74411774 ACGCCATGTCCCTGACATGGTCTTATACGAAATCA-CATACCG
1 ATGCCATATCCCAGATATGGTCTTATACGAAAT-ATCATACCG
74411816 ATGCCATATCCCAGATATGGTCTTAT
1 ATGCCATATCCCAGATATGGTCTTAT
74411842 TTGGAATATC
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 54 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAATATCATACCG
Found at i:74417247 original size:36 final size:37
Alignment explanation
Indices: 74417175--74417252 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
74417165 TTATTACGAA
* *
74417175 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
74417212 GTCTTACCCGGACAAAAT-TCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
74417248 GTCTT
1 GTCTT
74417253 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 21 0.55
37 17 0.45
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:74417449 original size:47 final size:47
Alignment explanation
Indices: 74417371--74418045 Score: 1169
Period size: 47 Copynumber: 14.4 Consensus size: 47
74417361 CCCTTCGGGA
* * * ** * * *
74417371 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74417418 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417465 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74417512 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74417558 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74417605 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74417652 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417699 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417795 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417842 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417889 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417935 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417981 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74418027 CTTATCACATATATACACT
1 CTTATCACATATATACACT
74418046 GTCTTGGCTG
Statistics
Matches: 606, Mismatches: 18, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
46 164 0.27
47 396 0.65
49 46 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74417804 original size:190 final size:188
Alignment explanation
Indices: 74417371--74418045 Score: 1178
Period size: 190 Copynumber: 3.6 Consensus size: 188
74417361 CCCTTCGGGA
* * * ** * * * * *
74417371 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74417436 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
74417501 GGCCATTAGGCCTTAT-ACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74417558 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
74417623 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74417688 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417748 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
74417813 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
74417878 GGCCATTAGGCCTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74417935 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74417999 TTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACACT
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACT
74418046 GTCTTGGCTG
Statistics
Matches: 469, Mismatches: 16, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
185 26 0.06
186 77 0.16
187 180 0.38
188 2 0.00
190 184 0.39
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74420410 original size:14 final size:14
Alignment explanation
Indices: 74420391--74420421 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
74420381 TAAATATCAT
74420391 GTTCAAATAATTTG
1 GTTCAAATAATTTG
74420405 GTTCAAATAATTTG
1 GTTCAAATAATTTG
74420419 GTT
1 GTT
74420422 ACTCGGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.45
Consensus pattern (14 bp):
GTTCAAATAATTTG
Found at i:74422556 original size:37 final size:36
Alignment explanation
Indices: 74422505--74422580 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
74422495 ATTCCAAAAA
74422505 TAATATTATCTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
* *
74422541 TAATAATTATTTTAATAGTATTTTATTAATTTAATAT
1 TAAT-ATTATCTTAATAGTATTATATTAATTTAATAT
74422578 TAA
1 TAA
74422581 AGTGACTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 12 0.34
37 21 0.60
38 2 0.06
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:74423266 original size:14 final size:14
Alignment explanation
Indices: 74423247--74423276 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74423237 AAACCTTGGA
*
74423247 TTTGAGGTTCATGG
1 TTTGAGGTTCAAGG
74423261 TTTGAGGTTCAAGG
1 TTTGAGGTTCAAGG
74423275 TT
1 TT
74423277 CAAAGTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.33, T:0.43
Consensus pattern (14 bp):
TTTGAGGTTCAAGG
Found at i:74425857 original size:18 final size:19
Alignment explanation
Indices: 74425823--74425858 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74425813 AGCACTTTTT
*
74425823 TTTTCTTTTTACTTCTTTA
1 TTTTCCTTTTACTTCTTTA
74425842 TTTTCCTTTT-CTTCTTT
1 TTTTCCTTTTACTTCTTT
74425859 CCATTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCCTTTTACTTCTTTA
Found at i:74428260 original size:46 final size:46
Alignment explanation
Indices: 74428200--74428456 Score: 351
Period size: 46 Copynumber: 5.6 Consensus size: 46
74428190 TGCCATAATG
* * * *
74428200 TCTTTCAACTATGGTCTCACTCATTTTC-TGTCATCTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATGGTA
** * *
74428246 TCTTTCAACCATGGTCTTGTTCATTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
*
74428292 TCTTTCAACCATGGTCTTATTCATTTTC-TATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATATCATGTTGCCATGGTA
* * *
74428338 TCTTTCAACCATGGTCTTACACATTTCATATCATGATGCCATGGTT
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
74428384 TCTTTCAACCATGGTCTTA--CATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
*
74428428 TCTTTCAACCATGGTCTTACACATTTCAT
1 TCTTTCAACCATGGTCTTACTCATTTCAT
74428457 TTCAGAAAGC
Statistics
Matches: 191, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
44 42 0.22
45 8 0.04
46 137 0.72
47 4 0.02
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCATGTTGCCATGGTA
Found at i:74436707 original size:185 final size:185
Alignment explanation
Indices: 74436395--74436753 Score: 639
Period size: 185 Copynumber: 1.9 Consensus size: 185
74436385 TCATTCACCA
* *
74436395 CTCATTACTTGCTTCAAGGAGCTCAACCCGGAGCTCACTATTTTGTAACGCAGTCTCGAGTTCTT
1 CTCATTACCTGCTTCAAGGAGCTCAACCCGGAGCTCACTATTTTGTAACGCAATCTCGAGTTCTT
74436460 CGACCTTCCTTTTCAGCTCTTTAATCTCATCCAAGCTCGCCTTCAGCTCCATTGCAGAGTTACGG
66 CGACCTTCCTTTTCAGCTCTTTAATCTCATCCAAGCTCGCCTTCAGCTCCATTGCAGAGTTACGG
*
74436525 CTACGATGCTGATGAAGCGATTTTTCTAGTTCGGCTATTCTGGCATATTACACTG
131 CTACGATGCTGATGAAGCGATTTTTCTAGTTCGACTATTCTGGCATATTACACTG
* *
74436580 CTCATTACCTGCTTCAAGGAGCTCAACCCGGAGC-CTACTATTTTGTAACGTAATCTCGAGTTTT
1 CTCATTACCTGCTTCAAGGAGCTCAACCCGGAGCTC-ACTATTTTGTAACGCAATCTCGAGTTCT
74436644 TCGACCTTCCTTTTCAGCTCTTTAATCTCATCCAAGCTCGCCTTCAGCTCCATTGCAGAGTTACG
65 TCGACCTTCCTTTTCAGCTCTTTAATCTCATCCAAGCTCGCCTTCAGCTCCATTGCAGAGTTACG
* *
74436709 GCTATGATGCTGATGAAGCGATTTTTCTAGTTTGACTATTCTGGC
130 GCTACGATGCTGATGAAGCGATTTTTCTAGTTCGACTATTCTGGC
74436754 CTTCAACTCG
Statistics
Matches: 166, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
184 1 0.01
185 165 0.99
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (185 bp):
CTCATTACCTGCTTCAAGGAGCTCAACCCGGAGCTCACTATTTTGTAACGCAATCTCGAGTTCTT
CGACCTTCCTTTTCAGCTCTTTAATCTCATCCAAGCTCGCCTTCAGCTCCATTGCAGAGTTACGG
CTACGATGCTGATGAAGCGATTTTTCTAGTTCGACTATTCTGGCATATTACACTG
Found at i:74448338 original size:42 final size:42
Alignment explanation
Indices: 74448291--74448381 Score: 164
Period size: 42 Copynumber: 2.1 Consensus size: 42
74448281 AACTAGTCGC
74448291 CACATTTTGTATTCCGAGGTAAGTTGCATGTAAATAGTACAA
1 CACATTTTGTATTCCGAGGTAAGTTGCATGTAAATAGTACAA
*
74448333 CACATTTTGTATTCCGAGGTAAGTTGTATGTAAATAGTACAA
1 CACATTTTGTATTCCGAGGTAAGTTGCATGTAAATAGTACAA
74448375 CTACATT
1 C-ACATT
74448382 AATATATGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 42 0.89
43 5 0.11
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (42 bp):
CACATTTTGTATTCCGAGGTAAGTTGCATGTAAATAGTACAA
Found at i:74448715 original size:46 final size:43
Alignment explanation
Indices: 74448632--74448752 Score: 125
Period size: 46 Copynumber: 2.7 Consensus size: 43
74448622 GACGAGTGCT
* * *
74448632 AGTGTAAGACATGTCTGGGACATGCTTTGGCCTCGAGACGTAAACC
1 AGTGTAAGACATGTCTGGGACATGC-ATCGACTCGAGACGT--ACC
* * **
74448678 AGTGTAACACATGTCTGGGACATGCATCGACTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACT-CGAGACGTACC
74448722 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
74448753 GCACTTGACC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 9 0.14
45 18 0.28
46 37 0.58
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTCGAGACGTACC
Found at i:74454209 original size:33 final size:34
Alignment explanation
Indices: 74454172--74454235 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
74454162 GGTATCAAGA
* * *
74454172 TTTTATATTTTA-AATTTTTTTATAAAATATCAG
1 TTTTATATGTTATAATTATTTTAAAAAATATCAG
*
74454205 TTTTATATGTTATTATTATTTTAAAAAATAT
1 TTTTATATGTTATAATTATTTTAAAAAATAT
74454236 AAAATATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 11 0.42
34 15 0.58
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (34 bp):
TTTTATATGTTATAATTATTTTAAAAAATATCAG
Found at i:74454938 original size:31 final size:29
Alignment explanation
Indices: 74454897--74455013 Score: 83
Period size: 31 Copynumber: 3.9 Consensus size: 29
74454887 ATAAATTTTA
*
74454897 AAAT-TATACATGAAATTTACTTTAATGTGC
1 AAATATATACATGAAATTTAATTT--TGTGC
* *
74454927 AATTATATACATGAATTTTAATTTTGTGC
1 AAATATATACATGAAATTTAATTTTGTGC
* * ** * *
74454956 AAATATACACGTGAAACTTTGGTTGTGGTTC
1 AAATATATACATGAAA-TTTAATT-TTGTGC
* *
74454987 AAATATATACTTAAAACTTTAATTTTG
1 AAATATATACATGAAA-TTTAATTTTG
74455014 ATTGAATCAT
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
29 17 0.25
30 10 0.15
31 40 0.60
ACGTcount: A:0.37, C:0.09, G:0.12, T:0.42
Consensus pattern (29 bp):
AAATATATACATGAAATTTAATTTTGTGC
Found at i:74454954 original size:29 final size:30
Alignment explanation
Indices: 74454897--74454971 Score: 82
Period size: 29 Copynumber: 2.5 Consensus size: 30
74454887 ATAAATTTTA
*
74454897 AAAT-TATACATGAAATTTACTTTAATGTGC
1 AAATATATACATGAAATTTAATTT-ATGTGC
* *
74454927 AATTATATACATGAATTTTAATTT-TGTGC
1 AAATATATACATGAAATTTAATTTATGTGC
* *
74454956 AAATATACACGTGAAA
1 AAATATATACATGAAA
74454972 CTTTGGTTGT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 17 0.46
30 3 0.08
31 17 0.46
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (30 bp):
AAATATATACATGAAATTTAATTTATGTGC
Found at i:74455661 original size:14 final size:14
Alignment explanation
Indices: 74455642--74455681 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
74455632 GAATATTGCA
74455642 AATATAAAAAATAT
1 AATATAAAAAATAT
74455656 AATATAAAAAA-AT
1 AATATAAAAAATAT
74455669 AA-ATAAATAAATA
1 AATATAAA-AAATA
74455682 AAATTACCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 12 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AATATAAAAAATAT
Found at i:74455674 original size:12 final size:12
Alignment explanation
Indices: 74455645--74455683 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
74455635 TATTGCAAAT
74455645 ATAAAAAATATAA
1 ATAAAAAA-ATAA
74455658 TATAAAAAAATAA
1 -ATAAAAAAATAA
*
74455671 ATAAATAAATAA
1 ATAAAAAAATAA
74455683 A
1 A
74455684 ATTACCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 12 0.50
13 4 0.17
14 8 0.33
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
ATAAAAAAATAA
Found at i:74456326 original size:12 final size:12
Alignment explanation
Indices: 74456264--74456329 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
74456254 TTTTCGTTTT
74456264 TTATATATTGTTA
1 TTAT-TATTGTTA
* **
74456277 TTATTTTTCCTA
1 TTATTATTGTTA
* **
74456289 ATATTATTAATA
1 TTATTATTGTTA
74456301 TTATTATT-TCTA
1 TTATTATTGT-TA
74456313 TTATTATTGTTA
1 TTATTATTGTTA
74456325 TTATT
1 TTATT
74456330 GACATCCTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
12 37 0.88
13 5 0.12
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.64
Consensus pattern (12 bp):
TTATTATTGTTA
Found at i:74456404 original size:18 final size:18
Alignment explanation
Indices: 74456381--74456419 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
74456371 CTATTATTAG
* *
74456381 TTATTACTATTTGTAGTA
1 TTATTACTATATGTAATA
*
74456399 TTATTATTATATGTAATA
1 TTATTACTATATGTAATA
74456417 TTA
1 TTA
74456420 GTATAGGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (18 bp):
TTATTACTATATGTAATA
Found at i:74456797 original size:20 final size:23
Alignment explanation
Indices: 74456751--74456797 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
74456741 TTTTAAATCC
*
74456751 CATATTATGTATGTATGTTTCTA
1 CATATTATGTATATATGTTTCTA
74456774 -ATATTATGT-TATAT-TTTC-A
1 CATATTATGTATATATGTTTCTA
74456793 CATAT
1 CATAT
74456798 ATTAAGTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 1 0.05
20 8 0.36
21 4 0.18
22 9 0.41
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.53
Consensus pattern (23 bp):
CATATTATGTATATATGTTTCTA
Found at i:74458515 original size:31 final size:31
Alignment explanation
Indices: 74458477--74458535 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
74458467 ATTATTTAGT
74458477 TATTTGAAAGTTTTCATTTAAGTCACTGAAC
1 TATTTGAAAGTTTTCATTTAAGTCACTGAAC
**
74458508 TATTTGAAAGTTTTTGTTTAAGTCACTG
1 TATTTGAAAGTTTTCATTTAAGTCACTG
74458536 GCTATTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (31 bp):
TATTTGAAAGTTTTCATTTAAGTCACTGAAC
Found at i:74463630 original size:18 final size:18
Alignment explanation
Indices: 74463597--74463631 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74463587 GCAAAAGCGG
* *
74463597 GAAGAAGAATAGTAACAA
1 GAAGAAGAACAATAACAA
74463615 GAAGAAGAACAATAACA
1 GAAGAAGAACAATAACA
74463632 GCGACAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.09, G:0.20, T:0.09
Consensus pattern (18 bp):
GAAGAAGAACAATAACAA
Found at i:74465051 original size:28 final size:29
Alignment explanation
Indices: 74465000--74465055 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
74464990 TAGTTCACTT
*
74465000 GGTTCGACAGTTTTTTGATTCAATTAGTG
1 GGTTCGACAGTTTTTCGATTCAATTAGTG
74465029 GGTTCGACAG-TTTTCGATTCAATTAGT
1 GGTTCGACAGTTTTTCGATTCAATTAGT
74465056 TCGACCGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.21, C:0.12, G:0.23, T:0.43
Consensus pattern (29 bp):
GGTTCGACAGTTTTTCGATTCAATTAGTG
Found at i:74471568 original size:68 final size:69
Alignment explanation
Indices: 74471485--74471621 Score: 204
Period size: 68 Copynumber: 2.0 Consensus size: 69
74471475 GAATTAACAC
* * **
74471485 GTCAAATCAACTTCTCATACATCTTCAATTGAAAATTAAAATGATTA-AATGTGATAAATTGATA
1 GTCAAATCAACTTCTCATACAACTTCAATTGAAAATTAAAATAATTATAATAAGATAAATTGATA
74471549 ACGT
66 ACGT
* * *
74471553 GTCAAATCAATTTCTCATATAACTTCAATTGAAAATTAAAGTAATTATAATAAGATAAATTGATA
1 GTCAAATCAACTTCTCATACAACTTCAATTGAAAATTAAAATAATTATAATAAGATAAATTGATA
74471618 ACGT
66 ACGT
74471622 CAGTGGTCAT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 42 0.69
69 19 0.31
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (69 bp):
GTCAAATCAACTTCTCATACAACTTCAATTGAAAATTAAAATAATTATAATAAGATAAATTGATA
ACGT
Found at i:74474613 original size:25 final size:25
Alignment explanation
Indices: 74474585--74474662 Score: 68
Period size: 25 Copynumber: 3.0 Consensus size: 25
74474575 TTTTTAGGAA
74474585 TTGTTTTATTATTATTTTTTTAAGT
1 TTGTTTTATTATTATTTTTTTAAGT
* *
74474610 TTGTTTTCTTATATTATTTATTTTAA-A
1 TTGTTTT-AT-TATTATTT-TTTTAAGT
* * *
74474637 TCGCTTTATTATTATGTATTTTAAGT
1 TTGTTTTATTATTAT-TTTTTTAAGT
74474663 CTTTACATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
25 19 0.46
26 3 0.07
27 13 0.32
28 6 0.15
ACGTcount: A:0.23, C:0.04, G:0.08, T:0.65
Consensus pattern (25 bp):
TTGTTTTATTATTATTTTTTTAAGT
Found at i:74474734 original size:26 final size:26
Alignment explanation
Indices: 74474680--74474801 Score: 131
Period size: 26 Copynumber: 4.6 Consensus size: 26
74474670 TATTTTAAAC
* *
74474680 TATTATTCATTTTAAA-TTTTATATA
1 TATTATTTATTTTAAACTATTATATA
*
74474705 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAACTATTATATA
** *
74474731 TATTATTTATTTTGAAGTTTTTTATATA
1 TATTATTTATTTT-AA-ACTATTATATA
*
74474759 TACCTT-TTTATTTTAAACTATTTTATA
1 TA--TTATTTATTTTAAACTATTATATA
74474786 TATTATTTATTTTAAA
1 TATTATTTATTTTAAA
74474802 TTTCTTACAT
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
25 17 0.21
26 31 0.39
27 11 0.14
28 11 0.14
29 8 0.10
30 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (26 bp):
TATTATTTATTTTAAACTATTATATA
Found at i:74474873 original size:25 final size:25
Alignment explanation
Indices: 74474680--74474880 Score: 145
Period size: 25 Copynumber: 7.8 Consensus size: 25
74474670 TATTTTAAAC
* *
74474680 TATTATTCATTTTAAATTTTATATA
1 TATTATTTATTTTAAATTTTTTATA
* * *
74474705 TATTATTTATTTTAAACTATTATACA
1 TATTATTTATTTTAAA-TTTTTTATA
*
74474731 TATTATTTATTTTGAAGTTTTTTATA
1 TATTATTTATTTT-AAATTTTTTATA
* *
74474757 TATACCTTTTTATTTTAAACTATTTTATA
1 TAT---TATTTATTTTAAA-TTTTTTATA
* *
74474786 TATTATTTATTTTAAATTTCTTACA
1 TATTATTTATTTTAAATTTTTTATA
* * * * *
74474811 TGTCATTTA-GTTATACTGTTTTATA
1 TATTATTTATTTTA-AATTTTTTATA
* **
74474836 TGTTAACTATTTTAAATTCTTTTAT-
1 TATTATTTATTTTAAATT-TTTTATA
74474861 TATTATTTATTTTAAGATTT
1 TATTATTTATTTTAA-ATTT
74474881 CCTATATTAT
Statistics
Matches: 136, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
24 3 0.02
25 56 0.41
26 53 0.39
27 2 0.01
28 2 0.01
29 20 0.15
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TATTATTTATTTTAAATTTTTTATA
Found at i:74474904 original size:75 final size:76
Alignment explanation
Indices: 74474767--74474911 Score: 190
Period size: 75 Copynumber: 1.9 Consensus size: 76
74474757 TATACCTTTT
* *
74474767 TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCTTACATGTCATTTAGTTATACTGTTT
1 TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCCTACATGTCATTTAGTTAAACTGTTT
74474832 TATATGTTAAC
66 TATATGTTAAC
* * *
74474843 TATTTTAAATTCTTTTAT-TATTATTTATTTTAAGATTTCCTATAT-T-ATTCGTA-TTAAACTG
1 TATTTTAAACTATTTTATATATTATTTATTTTAA-ATTTCCTACATGTCATT--TAGTTAAACTG
74474904 TTTTATAT
63 TTTTATAT
74474912 ATATTTTTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
74 3 0.05
75 31 0.51
76 27 0.44
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.58
Consensus pattern (76 bp):
TATTTTAAACTATTTTATATATTATTTATTTTAAATTTCCTACATGTCATTTAGTTAAACTGTTT
TATATGTTAAC
Found at i:74482261 original size:12 final size:11
Alignment explanation
Indices: 74482233--74482279 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
74482223 TTTAACTTAA
74482233 ATAT-TTATTT
1 ATATATTATTT
74482243 ATATATTATTT
1 ATATATTATTT
*
74482254 ATACTATTATCT
1 ATA-TATTATTT
74482266 AT-TATCTATTT
1 ATATAT-TATTT
74482277 ATA
1 ATA
74482280 ATTTTGATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
10 7 0.23
11 15 0.48
12 9 0.29
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATATTATTT
Found at i:74484178 original size:28 final size:28
Alignment explanation
Indices: 74484138--74484193 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
74484128 CTTTGGCAAT
74484138 TAGTATAGTTTTATACATGTCAACAGAA
1 TAGTATAGTTTTATACATGTCAACAGAA
74484166 TAGTATAGTTTTATACATGTCAACAGAA
1 TAGTATAGTTTTATACATGTCAACAGAA
74484194 CCATCAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (28 bp):
TAGTATAGTTTTATACATGTCAACAGAA
Found at i:74490628 original size:22 final size:22
Alignment explanation
Indices: 74490603--74490647 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
74490593 GATGCATTTC
*
74490603 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
74490625 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
74490647 A
1 A
74490648 ATTATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:74498209 original size:22 final size:22
Alignment explanation
Indices: 74498184--74498228 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
74498174 TATGCATTTC
*
74498184 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
74498206 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
74498228 A
1 A
74498229 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Found at i:74500052 original size:20 final size:20
Alignment explanation
Indices: 74500023--74500100 Score: 57
Period size: 20 Copynumber: 3.6 Consensus size: 20
74500013 AGCTCAAAGG
74500023 AAATGGAAAATACATCTATT
1 AAATGGAAAATACATCTATT
* * * *
74500043 AAATGTAAAATATACTTTTTT
1 AAATGGAAAATACA-TCTATT
74500064 GAATAGTTTGGAAAATACATCTATT
1 -AA-A---TGGAAAATACATCTATT
*
74500089 AAATGTAAAATA
1 AAATGGAAAATA
74500101 TACTTTTTTG
Statistics
Matches: 43, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
20 20 0.47
21 4 0.09
22 2 0.05
23 2 0.05
24 2 0.05
25 4 0.09
26 9 0.21
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.36
Consensus pattern (20 bp):
AAATGGAAAATACATCTATT
Found at i:74500093 original size:46 final size:46
Alignment explanation
Indices: 74500026--74500118 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
74500016 TCAAAGGAAA
74500026 TGGAAAATACATCTATTAAATGTAAAATATACTTTTTTGAATAGTT
1 TGGAAAATACATCTATTAAATGTAAAATATACTTTTTTGAATAGTT
74500072 TGGAAAATACATCTATTAAATGTAAAATATACTTTTTTGAATAGTT
1 TGGAAAATACATCTATTAAATGTAAAATATACTTTTTTGAATAGTT
74500118 T
1 T
74500119 TCTTGATGAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.42
Consensus pattern (46 bp):
TGGAAAATACATCTATTAAATGTAAAATATACTTTTTTGAATAGTT
Found at i:74502847 original size:62 final size:62
Alignment explanation
Indices: 74502777--74502898 Score: 235
Period size: 62 Copynumber: 2.0 Consensus size: 62
74502767 AGTCTCTTTA
74502777 CGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAATGGATT
1 CGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAATGGATT
*
74502839 CGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTTCCCACAATATGGTATAATGGA
1 CGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAATGGA
74502899 ACAATCTCTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (62 bp):
CGACTATTGGGAGCGATTGAAGAAATTGTGTGCAAGTTGCCCACAATATGGTATAATGGATT
Found at i:74504890 original size:15 final size:15
Alignment explanation
Indices: 74504870--74504918 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
74504860 CAATTTTTGT
74504870 TTTTATTTTTCTTTA
1 TTTTATTTTTCTTTA
74504885 TTTTATTTTAT-TTTA
1 TTTTATTTT-TCTTTA
74504900 --TTATTTATTACTTTA
1 TTTTATTT-TT-CTTTA
74504915 TTTT
1 TTTT
74504919 GTTTGGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 7 0.25
14 1 0.04
15 17 0.61
16 1 0.04
17 2 0.07
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTCTTTA
Found at i:74507424 original size:22 final size:23
Alignment explanation
Indices: 74507370--74507451 Score: 94
Period size: 24 Copynumber: 3.6 Consensus size: 23
74507360 CTAAGCTGAT
74507370 AAACAGTAAGCTCTATTGAGCTA
1 AAACAGTAAGCTCTATTGAGCTA
*
74507393 CAAACGGTAAGCTCTATTGAGCT-
1 -AAACAGTAAGCTCTATTGAGCTA
* * *
74507416 AAACAGTAAGTTCTATCGAGCTG
1 AAACAGTAAGCTCTATTGAGCTA
* *
74507439 AATCGGTAAGCTC
1 AAACAGTAAGCTC
74507452 ATACGAGCTG
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
22 19 0.38
23 10 0.20
24 21 0.42
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (23 bp):
AAACAGTAAGCTCTATTGAGCTA
Found at i:74514984 original size:26 final size:25
Alignment explanation
Indices: 74514955--74515044 Score: 80
Period size: 24 Copynumber: 3.7 Consensus size: 25
74514945 GTCATGGTCG
* *
74514955 GTAAGCTCCTCCTGAGCTGATAAACA
1 GTAAGCTCCTACTGAGCT-ACAAACA
* *
74514981 GTAAGCT-CTATTGAGCTACAAACG
1 GTAAGCTCCTACTGAGCTACAAACA
* *
74515005 GTAAGCTCC-AATGAGCTA-AAATA
1 GTAAGCTCCTACTGAGCTACAAACA
*
74515028 GTAAGCTCTTAC-GAGCT
1 GTAAGCTCCTACTGAGCT
74515045 GAATCGGTAA
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
23 16 0.30
24 21 0.40
25 9 0.17
26 7 0.13
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
GTAAGCTCCTACTGAGCTACAAACA
Found at i:74515043 original size:23 final size:23
Alignment explanation
Indices: 74514975--74515067 Score: 59
Period size: 23 Copynumber: 4.0 Consensus size: 23
74514965 CCTGAGCTGA
*
74514975 TAAA-CAGTAAGCTC-TATTGAGC
1 TAAATCAGTAAGCTCATA-CGAGC
* * *
74514997 TACAAACGGTAAGCTCCA-ATGAGC
1 TA-AATCAGTAAGCT-CATACGAGC
*
74515021 TAAAAT-AGTAAGCTCTTACGAGC
1 T-AAATCAGTAAGCTCATACGAGC
* *
74515044 TGAATCGGTAAGCTCATACGAGC
1 TAAATCAGTAAGCTCATACGAGC
74515067 T
1 T
74515068 GTGGTGAGTC
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
22 6 0.11
23 31 0.55
24 16 0.29
25 3 0.05
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (23 bp):
TAAATCAGTAAGCTCATACGAGC
Found at i:74515044 original size:47 final size:49
Alignment explanation
Indices: 74514953--74515058 Score: 112
Period size: 47 Copynumber: 2.2 Consensus size: 49
74514943 GGGTCATGGT
** *
74514953 CGGTAAGCTCCTCCTGAGCTGATAAACAGTAAGCTCTATTGAGCTACAAA
1 CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTATCGAGCT-CAAA
* * *
74515003 CGGTAAGCTCC-AATGAGCT-A-AAATAGTAAGCTCT-TACGAGCTGAAT
1 CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTAT-CGAGCTCAAA
74515049 CGGTAAGCTC
1 CGGTAAGCTC
74515059 ATACGAGCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
46 13 0.27
47 18 0.37
48 1 0.02
49 6 0.12
50 11 0.22
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (49 bp):
CGGTAAGCTCCTAATGAGCTGATAAACAGTAAGCTCTATCGAGCTCAAA
Found at i:74517609 original size:101 final size:100
Alignment explanation
Indices: 74517429--74517624 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 100
74517419 ATGACAGGAT
* * * *
74517429 TGGTTTGGTTGATAATATGAAGAGAAATTCAAGGTACTTTTCCCTTTAGGCTCAAGAGTGTTTTG
1 TGGTTTGGTTGATAATACGAAGAGAAATTCAAGATACTTTTCCCTCTAGGCTCAAGAATGTTTTG
* *
74517494 TTGGAGCTCGAAGAAGCAAAAAACAGTGGCTAGGC
66 TTGGAGCTCAAAGAAACAAAAAACAGTGGCTAGGC
* * * * * *
74517529 TGGTTTTGTTGATGATACGAAGAGCACTTCAAGATA-TTTTCTCTCTCTAGGCTCAATAATTTTT
1 TGGTTTGGTTGATAATACGAAGAGAAATTCAAGATACTTTTC-C-CTCTAGGCTCAAGAATGTTT
*
74517593 TGTTGGAGCTCAAAGAAACAAAAAATAGTGGC
64 TGTTGGAGCTCAAAGAAACAAAAAACAGTGGC
74517625 ACAATCAATA
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
99 5 0.06
100 31 0.38
101 45 0.56
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (100 bp):
TGGTTTGGTTGATAATACGAAGAGAAATTCAAGATACTTTTCCCTCTAGGCTCAAGAATGTTTTG
TTGGAGCTCAAAGAAACAAAAAACAGTGGCTAGGC
Found at i:74533942 original size:33 final size:32
Alignment explanation
Indices: 74533905--74533983 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 32
74533895 ATGACCCTGC
* * *
74533905 TATGGTCTTACGTTCATAATGTCATAACCCGGT
1 TATGGTCTTAC-ATCAGAATGTCATAACCCAGT
* *
74533938 TATGGTCTTATCATCAGGATGTCATAGCCCAGT
1 TATGGTCTTA-CATCAGAATGTCATAACCCAGT
74533971 TATGGTCTTACAT
1 TATGGTCTTACAT
74533984 ATATACACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
32 3 0.08
33 36 0.90
34 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (32 bp):
TATGGTCTTACATCAGAATGTCATAACCCAGT
Found at i:74534319 original size:21 final size:20
Alignment explanation
Indices: 74534288--74534327 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
74534278 TTCTTGAAAC
*
74534288 AGGGCACACGCCTGTGTGGA
1 AGGGCACACGCCCGTGTGGA
74534308 AGGGCAACACGCCCGTGTGG
1 AGGGC-ACACGCCCGTGTGG
74534328 TCATAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (20 bp):
AGGGCACACGCCCGTGTGGA
Found at i:74534787 original size:192 final size:192
Alignment explanation
Indices: 74534460--74534824 Score: 640
Period size: 192 Copynumber: 1.9 Consensus size: 192
74534450 ATGACCTAGA
74534460 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
1 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
* *
74534525 AAGGGGCGCACGGCTAAGGCACACGCCCGTGGCCAGAGATCGTGTCCTCCACACGATTGAGACAC
66 AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
*
74534590 ACGGCCATGTCTCTACCTGTGTGTTTACTACCATGCATTTTGATGTCCCTCACACGGCCATG
131 ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTGATGTCCCTCACACGGCCATG
* * *
74534652 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTTTGACGTCAGCATCCAAT
1 ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
* * *
74534717 AAGGGGTGCACGGCCAAGGCACACGCCCGTGGCCAGAGGTCGTATCTTCCACACGATTGAGACAC
66 AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
*
74534782 ACGGCCGTGTCTCTACATGTGTGTTTACTACCATGCATTTTGA
131 ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTGA
74534825 CTTACAAGTT
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
192 163 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (192 bp):
ACACGCCCGTGTCCTAACCCGTGTCTAAAAGCCTTGACATTCTATTTCTAACGCCAGCATCCAAT
AAGGGGCGCACGGCCAAGGCACACGCCCGTGGCCAGAGATCGTATCCTCCACACGATTGAGACAC
ACGGCCATGTCTCTACATGTGTGTTTACTACCATGCATTTTGATGTCCCTCACACGGCCATG
Found at i:74537620 original size:214 final size:213
Alignment explanation
Indices: 74537244--74537679 Score: 730
Period size: 214 Copynumber: 2.0 Consensus size: 213
74537234 TTAATATTAG
*
74537244 TAATTTCATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAACTTAGTTCATATTAAAT
1 TAATTTTATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAACTTAGTTCATATTAAAT
*
74537309 GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAATGATCAATCCTTTACTTTAGCCTTT
66 GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCTTT
*
74537374 CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAGCT
131 CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAACT
74537439 TCCAACAACATAATTAAA
196 TCCAACAACATAATTAAA
* *
74537457 TAATTTTA-ATCATTTAAGCTTTAACATTCATAAAAAATTAGAAATATAATTTAGTTCATATTAA
1 TAATTTTATATCATTTAAGCTCTAACATTCAT--AAAATTAGAAATATAACTTAGTTCATATTAA
74537521 ATGAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCT
64 ATGAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCT
* ** ** *
74537586 TTCCGCGATTCAAACCTGGTCGATTTATTTCTTGATCTAAAATTTTAATTCTATTTAATTATCAA
129 TTCCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAA
* *
74537651 CTTCCAGCAACATAATTAAC
194 CTTCCAACAACATAATTAAA
74537671 TAATTTTAT
1 TAATTTTAT
74537680 GCAATTAAGT
Statistics
Matches: 207, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
212 22 0.11
213 7 0.03
214 178 0.86
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (213 bp):
TAATTTTATATCATTTAAGCTCTAACATTCATAAAATTAGAAATATAACTTAGTTCATATTAAAT
GAACTTACCTGATAAAAAAACGAAGTCGAAATTGAGAAAACGATCAATCCTTTACTTTAGCCTTT
CCGCAATTCAAACCTAATCGATTTATTTCTTGATCTAAAATAATAATTATATTTAATTATCAACT
TCCAACAACATAATTAAA
Found at i:74540369 original size:3 final size:3
Alignment explanation
Indices: 74540361--74540386 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74540351 GAAAGAAAAT
74540361 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
74540387 ATAAATCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:74546918 original size:70 final size:70
Alignment explanation
Indices: 74546798--74546931 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 70
74546788 AACCGCATAG
* * *
74546798 ATATATTACAGAGAACTGCAAAGCAATACAACTAGAAAAAATTCCAAGCCATATTAATATTCACA
1 ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAAATTCCAAGCCATATTAACATTCACA
74546863 TAGAT
66 TAGAT
* * * * * *
74546868 ATATATTATAGAGAACTGAAAAGAAATATAACTTGAAAAAGA-TGCGAGCCATATTGACATTCAC
1 ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAA-ATTCCAAGCCATATTAACATTCAC
74546932 CATTTAGTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
70 53 0.98
71 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.25
Consensus pattern (70 bp):
ATATATTACAGAGAACTGAAAAGAAATACAACTAGAAAAAATTCCAAGCCATATTAACATTCACA
TAGAT
Found at i:74565617 original size:16 final size:16
Alignment explanation
Indices: 74565596--74565628 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
74565586 AAATTTGTCA
74565596 ATCAAATAAAATCATT
1 ATCAAATAAAATCATT
74565612 ATCAAATAAAATCATT
1 ATCAAATAAAATCATT
74565628 A
1 A
74565629 GACTTCTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (16 bp):
ATCAAATAAAATCATT
Found at i:74566861 original size:24 final size:25
Alignment explanation
Indices: 74566816--74566896 Score: 85
Period size: 24 Copynumber: 3.2 Consensus size: 25
74566806 TTATATTTTA
* *
74566816 TATATATTTTGAATATTCAATAATT
1 TATATATTTTGAATTTTAAATAATT
*
74566841 TATATA-TTTGAATTTTAAATAGTT
1 TATATATTTTGAATTTTAAATAATT
* *
74566865 T-TAAATTTTAAATTTTAAAATAATTT
1 TATATATTTTGAATTTT-AAATAA-TT
74566891 TATATA
1 TATATA
74566897 AGTTTATATA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 3 0.07
24 25 0.56
25 11 0.24
26 3 0.07
27 3 0.07
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (25 bp):
TATATATTTTGAATTTTAAATAATT
Found at i:74566867 original size:25 final size:24
Alignment explanation
Indices: 74566816--74566896 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
74566806 TTATATTTTA
* * *
74566816 TATATATTTTGAATATTCAATAATT
1 TATATA-TTTGAATTTTAAATATTT
74566841 TATATATTTGAATTTTAAATAGTTT
1 TATATATTTGAATTTTAAATA-TTT
* *
74566866 TAAAT-TTTAAATTTTAAAATAATTT
1 TATATATTTGAATTTT-AAAT-ATTT
74566891 TATATA
1 TATATA
74566897 AGTTTATATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
24 22 0.48
25 23 0.50
26 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATATTTGAATTTTAAATATTT
Found at i:74571527 original size:12 final size:13
Alignment explanation
Indices: 74571505--74571536 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
74571495 AAAAAACATA
74571505 TATGATATGTATG
1 TATGATATGTATG
74571518 TATG-TATGTATG
1 TATGATATGTATG
74571530 TAT-ATAT
1 TATGATAT
74571537 ACAAAAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.78
13 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (13 bp):
TATGATATGTATG
Found at i:74571578 original size:4 final size:4
Alignment explanation
Indices: 74571564--74571616 Score: 52
Period size: 4 Copynumber: 13.0 Consensus size: 4
74571554 AAAAAACATA
* * ** *
74571564 TATG ATATG TATG TATG TATG CATG TATG TATG CATG TACA TTTG TATG
1 TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
74571613 TATG
1 TATG
74571617 CCGGTGTGAG
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (4 bp):
TATG
Found at i:74571589 original size:12 final size:12
Alignment explanation
Indices: 74571564--74571602 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
74571554 AAAAAACATA
*
74571564 TATGATATGTATG
1 TATG-TATGCATG
74571577 TATGTATGCATG
1 TATGTATGCATG
74571589 TATGTATGCATG
1 TATGTATGCATG
74571601 TA
1 TA
74571603 CATTTGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (12 bp):
TATGTATGCATG
Found at i:74571595 original size:63 final size:59
Alignment explanation
Indices: 74571471--74571591 Score: 224
Period size: 59 Copynumber: 2.1 Consensus size: 59
74571461 GATTATAAAA
*
74571471 TATATATACGAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
1 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
*
74571530 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGCATG
1 TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
74571589 TAT
1 TAT
74571592 GTATGCATGT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.37
Consensus pattern (59 bp):
TATATATACAAAAGCATTATTTCCAAAAAACATATATGATATGTATGTATGTATGTATG
Found at i:74574471 original size:20 final size:20
Alignment explanation
Indices: 74574446--74574512 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 20
74574436 TACAAAAAGA
74574446 AAAATTCAAAAATAATTTTT
1 AAAATTCAAAAATAATTTTT
*
74574466 AAAATTC-AAAAT-ATTTATA
1 AAAATTCAAAAATAATTT-TT
74574485 AAAATTTCAAAAATTTAAATTTTT
1 AAAA-TTCAAAAA--T-AATTTTT
74574509 AAAA
1 AAAA
74574513 AATTATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.11
19 10 0.26
20 10 0.26
21 4 0.11
23 1 0.03
24 5 0.13
25 4 0.11
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATTCAAAAATAATTTTT
Found at i:74574478 original size:19 final size:19
Alignment explanation
Indices: 74574446--74574498 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
74574436 TACAAAAAGA
*
74574446 AAAATTCAAAAATAATTTTT
1 AAAATTCAAAAAT-ATTTAT
74574466 AAAATTC-AAAATATTTAT
1 AAAATTCAAAAATATTTAT
74574484 AAAAATTTCAAAAAT
1 -AAAA-TTCAAAAAT
74574499 TTAAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.17
19 9 0.31
20 10 0.34
21 5 0.17
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTCAAAAATATTTAT
Found at i:74574779 original size:5 final size:5
Alignment explanation
Indices: 74574771--74574803 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
74574761 CTCGACTTGA
74574771 ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC ATT
1 ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC ATT
74574804 CGACTCGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTC
Found at i:74583726 original size:30 final size:31
Alignment explanation
Indices: 74583700--74583758 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
74583690 GTAAATACTT
* *
74583700 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
*
74583730 AAAATTTGAAGGACTAATAGTGAAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
74583759 TTTAAGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.49, C:0.02, G:0.20, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:74583978 original size:8 final size:8
Alignment explanation
Indices: 74583965--74584003 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
74583955 TGATATTTTA
74583965 TAATTATT
1 TAATTATT
74583973 TAATTATT
1 TAATTATT
74583981 TAATTA-T
1 TAATTATT
*
74583988 TATTTATT
1 TAATTATT
74583996 TAA-TATT
1 TAATTATT
74584003 T
1 T
74584004 TAATAAGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 11 0.39
8 17 0.61
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TAATTATT
Found at i:74586634 original size:21 final size:21
Alignment explanation
Indices: 74586586--74586625 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
74586576 AGGGCATACA
74586586 CCCGTGTAGAAGGGAAACACG
1 CCCGTGTAGAAGGGAAACACG
74586607 CCCGTGTAGAAGGGAAACA
1 CCCGTGTAGAAGGGAAACA
74586626 TGGTCGTGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.33, T:0.10
Consensus pattern (21 bp):
CCCGTGTAGAAGGGAAACACG
Found at i:74588423 original size:39 final size:39
Alignment explanation
Indices: 74588338--74588514 Score: 239
Period size: 39 Copynumber: 4.5 Consensus size: 39
74588328 ACAAAGCATG
* * *
74588338 CGGGACTTTAAGCCCGGATGTAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
74588378 CAGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
74588417 CGGGACTTAGCCCGGGTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
74588456 CGAGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
74588495 CGGAAATTAGCCCAGATATA
1 CGGGACTTAGCCCGGATATA
74588515 TATCTCACAC
Statistics
Matches: 122, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 19 0.16
39 98 0.80
40 5 0.04
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:74594810 original size:39 final size:38
Alignment explanation
Indices: 74594741--74594907 Score: 219
Period size: 39 Copynumber: 4.3 Consensus size: 38
74594731 CGGGACTTTA
* * * *
74594741 AGCCCGGATGTAATACCAGTAC-AAAGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGACTT
*
74594779 AGCCTGGATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTC-GGACTT
*
74594818 AGCCCGGGTATAACACCAGCACGAATGCCTTCGAGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GACTT
* *
74594857 AGCCCGGATATAACACCAGCACGAATGCCTTCGAAAATT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCG-GACTT
74594896 AGCCCGGATATA
1 AGCCCGGATATA
74594908 TATCTCACAC
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
38 19 0.16
39 97 0.84
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (38 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGACTT
Found at i:74601555 original size:39 final size:39
Alignment explanation
Indices: 74601512--74601765 Score: 350
Period size: 39 Copynumber: 6.5 Consensus size: 39
74601502 GTGTGAGATA
* *
74601512 TATATCCGGGTTAATTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
74601551 TATATCCGGGGTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
74601590 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
74601629 TATA-CTCGGGCTAAGTCCTGAAGGCATTCATGCTGGTGT
1 TATATC-CGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
74601668 TATACCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * * *
74601707 TATATCCGGGCTAAGTACTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
74601745 TACATTCGGGCTTAAAGTCCC
1 TATATCCGGGC-T-AAGTCCC
74601766 CCATGCTTTG
Statistics
Matches: 194, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 21 0.11
39 167 0.86
40 6 0.03
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:74604183 original size:43 final size:43
Alignment explanation
Indices: 74604078--74604185 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
74604068 TAGTCCAACT
* * * *
74604078 ATGGTCTTACACGAT-ATCAAATAATGATGCCAATGTACCAGAT
1 ATGGTCTTACA-AATAATCACATAAAGATGCCAATGTACCAGAC
* * *
74604121 AGGGTCTTACACATAATCACATAAAGATGCCAATGTCCCAGAC
1 ATGGTCTTACAAATAATCACATAAAGATGCCAATGTACCAGAC
74604164 ATGGTCTTACAAATAATCACAT
1 ATGGTCTTACAAATAATCACAT
74604186 CTCGTTAATC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 2 0.04
43 54 0.96
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACAAATAATCACATAAAGATGCCAATGTACCAGAC
Found at i:74610311 original size:23 final size:23
Alignment explanation
Indices: 74610277--74610321 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
74610267 ATTTCTAGTT
*
74610277 AATTGAATTAAGTTATTCGAGTC
1 AATTGAATTAAGTAATTCGAGTC
74610300 AATTCGAA-TAAGTAATTCGAGT
1 AATT-GAATTAAGTAATTCGAGT
74610322 TTCGAGTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (23 bp):
AATTGAATTAAGTAATTCGAGTC
Found at i:74612366 original size:24 final size:26
Alignment explanation
Indices: 74612322--74612370 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
74612312 CAAGGTAAGT
74612322 TTATATGTTAAATAAGCTTTAATATAA
1 TTATATGTTAAAT-AGCTTTAATATAA
74612349 TTATAT-TTAAAT-GCTTTAATAT
1 TTATATGTTAAATAGCTTTAATAT
74612371 TGCATGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (26 bp):
TTATATGTTAAATAGCTTTAATATAA
Found at i:74613764 original size:42 final size:41
Alignment explanation
Indices: 74613717--74613797 Score: 94
Period size: 42 Copynumber: 1.9 Consensus size: 41
74613707 AGAATTGAGC
74613717 ACACGG-GCAGAGACACGGACGTGTGTCTC-AGCCGTGTGAGGG
1 ACACGGCGCA-AG-CACGGACGTGTGTCTCGA-CCGTGTGAGGG
* *
74613759 ACACGGCCTCAAGCATGGACGTGTGTCTCGACCGTGTGA
1 ACACGG-CGCAAGCACGGACGTGTGTCTCGACCGTGTGA
74613798 AATCTGCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
42 29 0.85
43 3 0.09
44 2 0.06
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (41 bp):
ACACGGCGCAAGCACGGACGTGTGTCTCGACCGTGTGAGGG
Found at i:74613991 original size:31 final size:31
Alignment explanation
Indices: 74613919--74613992 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 31
74613909 CGAGTTAGGG
* *
74613919 ACACGGGCGTGTGTGACCATATGGCCTGCCC
1 ACACGGGCGTGTGTGACCACACGGCCTGCCC
* * *
74613950 ATATGGGCGTGTGTGACCACACGGCCTGCCT
1 ACACGGGCGTGTGTGACCACACGGCCTGCCC
*
74613981 ACACGAGCGTGT
1 ACACGGGCGTGT
74613993 CCCAAACTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGGCCTGCCC
Found at i:74614424 original size:18 final size:18
Alignment explanation
Indices: 74614397--74614453 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
74614387 ATTTTATAAA
74614397 ATAATAATATTTTAATTTT
1 ATAAT-ATATTTTAATTTT
* *
74614416 ATGATATATTTTATTTTT
1 ATAATATATTTTAATTTT
*
74614434 AAAATATAATTTT-ATTTT
1 ATAATAT-ATTTTAATTTT
74614452 AT
1 AT
74614454 TTTATTAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 22 0.71
19 9 0.29
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATAATATATTTTAATTTT
Found at i:74619093 original size:49 final size:51
Alignment explanation
Indices: 74619033--74619156 Score: 155
Period size: 50 Copynumber: 2.5 Consensus size: 51
74619023 AGTCGATGTG
* *
74619033 ATGTCCTAGACATGGTCTTACACTGA-CTATCA-AAATCGAGGCCGACGTC
1 ATGTCCTAGACATGGTCTTACACTGAGCTATCACAAATCCAGGCCGACGCC
* * * * *
74619082 ATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCATGCCGATGCC
1 ATGTCCTAGACATGGTCTTACACTGAGCTATCACAAATCCAGGCCGACGCC
*
74619132 ATGTCCTAGACATGGTTTTACACTG
1 ATGTCCTAGACATGGTCTTACACTG
74619157 GCTCACAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.02
49 28 0.44
50 34 0.54
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (51 bp):
ATGTCCTAGACATGGTCTTACACTGAGCTATCACAAATCCAGGCCGACGCC
Found at i:74620824 original size:19 final size:18
Alignment explanation
Indices: 74620784--74620829 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
74620774 GATAACAAAG
* *
74620784 ATGAGAAATAACTATGAG
1 ATGAGAAATAAATATGAA
74620802 ATGAGAAATGAAATATGAA
1 ATGAGAAAT-AAATATGAA
74620821 ATGATGAAA
1 ATGA-GAAA
74620830 CGAGATGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.22, T:0.22
Consensus pattern (18 bp):
ATGAGAAATAAATATGAA
Found at i:74624391 original size:13 final size:13
Alignment explanation
Indices: 74624356--74624419 Score: 67
Period size: 13 Copynumber: 4.8 Consensus size: 13
74624346 TCAATGTAAA
*
74624356 CATTTCATATAAT
1 CATTTCATATAAC
*
74624369 TATTTCCATATAAC
1 CATTT-CATATAAC
*
74624383 C-TATTCATATATC
1 CAT-TTCATATAAC
*
74624396 CATTTCATATAAT
1 CATTTCATATAAC
74624409 CATTTCATATA
1 CATTTCATATA
74624420 TTCATTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
13 32 0.76
14 10 0.24
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:74624415 original size:26 final size:25
Alignment explanation
Indices: 74624354--74624426 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
74624344 TATCAATGTA
*
74624354 AACATTTCATATAATTATTTCCATAT
1 AACATTTCATAT-ATCATTTCCATAT
*
74624380 AACCTATTCATATATCCATTT-CATAT
1 AACAT-TTCATATAT-CATTTCCATAT
74624406 AATCATTTCATATATTCATTT
1 AA-CATTTCATATA-TCATTT
74624427 TAAATTGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 26 0.65
27 14 0.35
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.47
Consensus pattern (25 bp):
AACATTTCATATATCATTTCCATAT
Done.