Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 222 of 362
Found at i:74844000 original size:30 final size:27
Alignment explanation
Indices: 74843960--74844024 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 27
74843950 TAGACCACAT
*
74843960 TTTGGCAAAATGACCATTTTGCCCCTAGG
1 TTTGGTAAAATGACCATTTT--CCCTAGG
* *
74843989 CTTTGGTAAAATTACGATTTTCCCTAGG
1 -TTTGGTAAAATGACCATTTTCCCTAGG
74844017 TTT-GTAAA
1 TTTGGTAAA
74844025 TCGATTTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 5 0.16
27 3 0.09
28 7 0.22
30 17 0.53
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
TTTGGTAAAATGACCATTTTCCCTAGG
Found at i:74848012 original size:31 final size:32
Alignment explanation
Indices: 74847969--74848035 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
74847959 TATTTCATGA
74847969 ATATGAGAATGGTGAATTTGTAAGCATGAATG
1 ATATGAGAATGGTGAATTTGTAAGCATGAATG
74848001 ATATG-GAATGGTGAATTTGTAAGCATGAATG
1 ATATGAGAATGGTGAATTTGTAAGCATGAATG
74848032 ATAT
1 ATAT
74848036 TATGGTCGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 30 0.86
32 5 0.14
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (32 bp):
ATATGAGAATGGTGAATTTGTAAGCATGAATG
Found at i:74864244 original size:20 final size:20
Alignment explanation
Indices: 74864199--74864235 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
74864189 TACATGCTAA
74864199 TTAA-CATGGTTTAATTAAG
1 TTAATCATGGTTTAATTAAG
*
74864218 TTAATCATGTTTTAATTA
1 TTAATCATGGTTTAATTA
74864236 CTTTAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (20 bp):
TTAATCATGGTTTAATTAAG
Found at i:74867206 original size:43 final size:43
Alignment explanation
Indices: 74867156--74867263 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
74867146 GATTACCGAG
* *
74867156 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATCGGCATCGTT
*
74867198 ATCGTGATTATGA-GTAAGACCATGTCTGGGACATCGGCATCGTT
1 AT-GTGATTA-CATGTAAGACCATGTCTGGGACATCGGCATCGTT
* *
74867242 ATGTGATTTCGTGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
74867264 AGCTGGGCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.04
43 50 0.89
44 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATCGGCATCGTT
Found at i:74869298 original size:36 final size:36
Alignment explanation
Indices: 74869253--74869331 Score: 113
Period size: 36 Copynumber: 2.2 Consensus size: 36
74869243 ATTGTCTCAA
** *
74869253 CGAGCTTTCTTTCATTCTTTCTTTATGCTTCCATAGC
1 CGAG-TTTCTTTCATTCTTTCTCCATGCTACCATAGC
*
74869290 CGAGTTTCTTTCATTCTTTCTCCATGCTACCTTAGC
1 CGAGTTTCTTTCATTCTTTCTCCATGCTACCATAGC
74869326 CGAGTT
1 CGAGTT
74869332 ATGGTTTTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
36 34 0.89
37 4 0.11
ACGTcount: A:0.14, C:0.28, G:0.13, T:0.46
Consensus pattern (36 bp):
CGAGTTTCTTTCATTCTTTCTCCATGCTACCATAGC
Found at i:74882806 original size:54 final size:54
Alignment explanation
Indices: 74882748--74882898 Score: 173
Period size: 54 Copynumber: 2.8 Consensus size: 54
74882738 ACTACAAGTG
*
74882748 TATTTCGATAATTTTACAAA-TCAGGGGTATTTC-GATAATTTTACAAAT-TGAGGA
1 TATTTCGATAATTTTACAAACT-AAGGGTATTTCAG-TAATTTTAC-AATCTGAGGA
* * *
74882802 TATTTTGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAATCTTAGGG
1 TATTTCGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAATCTGAGGA
* * * **
74882856 TAATTCGATAATTTTACAAACTGAGGCTATTTTGGTAATTTTA
1 TATTTCGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTA
74882899 TAAATCAGAG
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
53 3 0.04
54 79 0.94
55 2 0.02
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAATCTGAGGA
Found at i:74882841 original size:81 final size:80
Alignment explanation
Indices: 74882721--74882898 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 80
74882711 CCTATAGGGG
* * *
74882721 TATTTTGATAATTTTACACTACAAGTGTATTTCGATAATTTTACAAATC-AGGGGTATTTCGATA
1 TATTTTGATAATTTTACACAACAAGGGTATTTCGATAATTTTAC-AATCTA-GGGTAATTCGATA
*
74882785 ATTTTACAAATTGAGGA
64 ATTTTACAAACTGAGGA
74882802 TATTTTGATAATTTTACA-AACTAAGGGTATTTC-AGTAATTTTACAATCTTAGGGTAATTCGAT
1 TATTTTGATAATTTTACACAAC-AAGGGTATTTCGA-TAATTTTACAATC-TAGGGTAATTCGAT
*
74882865 AATTTTACAAACTGAGGC
63 AATTTTACAAACTGAGGA
*
74882883 TATTTTGGTAATTTTA
1 TATTTTGATAATTTTA
74882899 TAAATCAGAG
Statistics
Matches: 87, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
80 7 0.08
81 79 0.91
82 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.42
Consensus pattern (80 bp):
TATTTTGATAATTTTACACAACAAGGGTATTTCGATAATTTTACAATCTAGGGTAATTCGATAAT
TTTACAAACTGAGGA
Found at i:74882873 original size:27 final size:26
Alignment explanation
Indices: 74882718--74882898 Score: 152
Period size: 27 Copynumber: 6.7 Consensus size: 26
74882708 TACCCTATAG
* * *
74882718 GGGTATTTTGATAATTTTACACTACAA
1 GGGTATTTCGATAATTTTACAAT-CTA
*
74882745 GTGTATTTCGATAATTTTACAAATC-A
1 GGGTATTTCGATAATTTTAC-AATCTA
74882771 GGGGTATTTCGATAATTTTACAAAT-TGA
1 -GGGTATTTCGATAATTTTAC-AATCT-A
* * *
74882799 GGATATTTTGATAATTTTACAAACTAA
1 GGGTATTTCGATAATTTTACAATCT-A
74882826 GGGTATTTC-AGTAATTTTACAATCTTA
1 GGGTATTTCGA-TAATTTTACAATC-TA
* *
74882853 GGGTAATTCGATAATTTTACAAACTGA
1 GGGTATTTCGATAATTTTACAATCT-A
* * *
74882880 GGCTATTTTGGTAATTTTA
1 GGGTATTTCGATAATTTTA
74882899 TAAATCAGAG
Statistics
Matches: 128, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
26 5 0.04
27 118 0.92
28 5 0.04
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.41
Consensus pattern (26 bp):
GGGTATTTCGATAATTTTACAATCTA
Found at i:74889626 original size:40 final size:41
Alignment explanation
Indices: 74889563--74889655 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 41
74889553 TATGTTTGGT
* * *
74889563 ACTTAGTGTGCG-TTTCGAGATAGCTTCGGCTATATATAGC
1 ACTTAGTGTGCGAATTCGAAATAGCTTCGACTATATATAGC
* * *
74889603 ACTTAGTGTGCGAATT-GAAATAGCTTCGACTTTATGTGGC
1 ACTTAGTGTGCGAATTCGAAATAGCTTCGACTATATATAGC
*
74889643 ACTAAGTGTGCGA
1 ACTTAGTGTGCGA
74889656 TACCGAGATA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 43 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
ACTTAGTGTGCGAATTCGAAATAGCTTCGACTATATATAGC
Found at i:74889695 original size:30 final size:30
Alignment explanation
Indices: 74889661--74889722 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
74889651 TGCGATACCG
*
74889661 AGATAGCTTTGGTTTAATGTGATAGCACTA
1 AGATAGCTTCGGTTTAATGTGATAGCACTA
74889691 AGATAGCTTCGGTTTAATGTGATAGCACTA
1 AGATAGCTTCGGTTTAATGTGATAGCACTA
74889721 AG
1 AG
74889723 TGTGCGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (30 bp):
AGATAGCTTCGGTTTAATGTGATAGCACTA
Found at i:74892242 original size:27 final size:27
Alignment explanation
Indices: 74892211--74892388 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
74892201 TAAATTGTAC
*
74892211 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
74892238 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
74892264 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
74892292 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
74892319 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
74892347 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
74892374 AGAACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74892389 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:74892324 original size:81 final size:82
Alignment explanation
Indices: 74892212--74892367 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
74892202 AAATTGTACA
* *
74892212 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-ATGCACTAAGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGTA-GCACTAAGT
74892275 GTGCGAATTGACCATGCG
65 GTGCGAATTGACCATGCG
** *
74892293 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGTAGCACTAAGTG
*
74892358 TGCGAGTTGA
66 TGCGAATTGA
74892368 TTATATAGAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 40 0.60
82 26 0.39
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (82 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGAATGAATATGTAGCACTAAGTG
TGCGAATTGACCATGCG
Found at i:74912502 original size:53 final size:52
Alignment explanation
Indices: 74912373--74912525 Score: 207
Period size: 53 Copynumber: 2.9 Consensus size: 52
74912363 ATTAGGGTTT
74912373 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGATTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-G-TTCTAAGGC
* * *
74912428 AAGGAAATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTC-TAAGGC
* * * *
74912481 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTT
74912526 TCAAAAGAAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 3 0.03
53 45 0.52
54 7 0.08
55 32 0.37
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTAAGGC
Found at i:74912785 original size:16 final size:16
Alignment explanation
Indices: 74912764--74912794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74912754 ATAAATTTGA
74912764 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74912780 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74912795 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74919025 original size:43 final size:43
Alignment explanation
Indices: 74918937--74919050 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
74918927 TATGATTTCA
* * *
74918937 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTGAGATATCG
1 TGTAAAACCATGTCTGGGACATTGGCATCGACTTAAGATATCG
*
74918980 TGTAAAACCGTGTCTGGGACATTGGCATCGA-TTAAAGAT-TACG
1 TGTAAAACCATGTCTGGGACATTGGCATCGACTT-AAGATAT-CG
* * * * *
74919023 TGTAAGACTATTTTTGGGACATCGGCAT
1 TGTAAAACCATGTCTGGGACATTGGCAT
74919051 TGTATTTAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
42 3 0.05
43 56 0.95
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAAACCATGTCTGGGACATTGGCATCGACTTAAGATATCG
Found at i:74925642 original size:43 final size:42
Alignment explanation
Indices: 74925577--74925740 Score: 168
Period size: 43 Copynumber: 3.9 Consensus size: 42
74925567 TCTGAGATAT
* * *
74925577 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACTTGA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAA-TTAA
* * *
74925620 GATTTCGTGTAAGACCGTGTCTGGGACATTTGCATCGATTAAA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATT-AA
* * * * *
74925663 GATTACGTGTAAGACCATGTCTGGGACATCGACATCGTATTTA
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATC-AATTAA
* * *
74925706 -ATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATC
74925741 GTTATTGATT
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
42 31 0.31
43 66 0.66
44 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCAATTAA
Found at i:74925728 original size:85 final size:86
Alignment explanation
Indices: 74925577--74925741 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 86
74925567 TCTGAGATAT
* * * * * *
74925577 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCAACTTGAGATTTCGTGTAAGACCGTGTCT
1 GATTACGTGTAAGACCACGTCTGGGACATCGACATCAACTTGAGATTTCATGTAAGACCCTGTCT
* *
74925642 GGGACATTTGCATCGATTAAA
66 GGGACAGTGGCATCGATTAAA
* * *
74925663 GATTACGTGTAAGACCATGTCTGGGACATCGACATCGTA-TTTA-ATTTCATGTAAGACCCTGTC
1 GATTACGTGTAAGACCACGTCTGGGACATCGACATC-AACTTGAGATTTCATGTAAGACCCTGTC
74925726 TGGGACAGTGGCATCG
65 TGGGACAGTGGCATCG
74925742 TTATTGATTA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
85 32 0.48
86 34 0.51
87 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (86 bp):
GATTACGTGTAAGACCACGTCTGGGACATCGACATCAACTTGAGATTTCATGTAAGACCCTGTCT
GGGACAGTGGCATCGATTAAA
Found at i:74925760 original size:42 final size:41
Alignment explanation
Indices: 74925627--74925761 Score: 128
Period size: 42 Copynumber: 3.2 Consensus size: 41
74925617 TGAGATTTCG
* * ** *
74925627 TGTAAGACCGTGTCTGGGACATTTGCATCGATTAAAGATTACG
1 TGTAAGACCATGTCTGGGACA-TGGCATCG-TTATTGATTACA
* * *
74925670 TGTAAGACCATGTCTGGGACATCGACATCG-TATTTAATTTCA
1 TGTAAGACCATGTCTGGGACAT-GGCATCGTTA-TTGATTACA
*
74925712 TGTAAGACCCTGTCTGGGACAGTGGCATCGTTATTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGTTATTGATTACA
*
74925754 TATAAGAC
1 TGTAAGAC
74925762 TACGTTTGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
41 2 0.03
42 45 0.60
43 28 0.37
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATGGCATCGTTATTGATTACA
Found at i:74935118 original size:27 final size:26
Alignment explanation
Indices: 74935059--74935192 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 26
74935049 AGGAAGTGTC
* * *
74935059 CTGGTGGCTATGCCACAATTTATCTAAT
1 CTGGTGGCTCTGCCAC-ATATATCT-GT
74935087 CTGGTGGCTCTGCCACATATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
*
74935113 CTTGGTGGCTATGCCACA-ATTATCTGAT
1 C-TGGTGGCTCTGCCACATA-TATCTG-T
*
74935141 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACATATATCT-GT
* *
74935168 CTAGTGGCTCTACCACA-ATATCTGT
1 CTGGTGGCTCTGCCACATATATCTGT
74935193 ATCTGGTGAC
Statistics
Matches: 92, Mismatches: 9, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.01
26 9 0.10
27 64 0.70
28 18 0.20
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATATATCTGT
Found at i:74935151 original size:54 final size:54
Alignment explanation
Indices: 74935055--74935200 Score: 197
Period size: 54 Copynumber: 2.7 Consensus size: 54
74935045 ATGGAGGAAG
* *
74935055 TGTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATC
1 TGTCTTGGTGGCTATGCCACAA-TTATCTGATCTGGTGGCTCTGCCACATATATC
74935110 TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
1 TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
* * * *
74935164 TAT-TCTAGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 TGTCT-TGGTGGCTATGCCACAATTATCTG-ATCTGGTG
74935201 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
53 7 0.08
54 55 0.66
55 21 0.25
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (54 bp):
TGTCTTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATC
Found at i:74935212 original size:81 final size:81
Alignment explanation
Indices: 74935059--74935218 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 81
74935049 AGGAAGTGTC
* * * * *
74935059 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCTGTCTTGGTGGCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTACCACATATATCTGTATTGGTGACTA
74935124 TGCCACAATTATCTGAT
66 TGCCACAA-TATCTGAT
* *
74935141 CTGGTGGCTCTGCCAC-ATATATCTATTCTAGTGGCTCTACCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTACCACATATATCTGTAT-TGGTGACT
*
74935204 -TCGTCACAATATCTG
65 AT-GCCACAATATCTG
74935219 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 16 0.24
81 37 0.54
82 15 0.22
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.35
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTAGTGGCTCTACCACATATATCTGTATTGGTGACTA
TGCCACAATATCTGAT
Found at i:74943142 original size:54 final size:54
Alignment explanation
Indices: 74943042--74943186 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
74943032 TGGAGGAAGC
*
74943042 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGCCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTGATCTGGTGCCTCTGCCACATATATCT
*
74943097 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
* *
74943151 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
74943187 ACTTCGTCAC
Statistics
Matches: 85, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
53 6 0.07
54 58 0.68
55 21 0.25
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGCCTCTGCCACATATATCT
Found at i:74943183 original size:27 final size:27
Alignment explanation
Indices: 74943045--74943204 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
74943035 AGGAAGCGTC
* *
74943045 CTGGTGGCTATGCCACAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
* *
74943073 CTGGTGCCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
74943100 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
74943127 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
74943154 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
74943181 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
74943205 GCAGCCTCGC
Statistics
Matches: 114, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 87 0.76
28 16 0.14
29 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:74943198 original size:81 final size:81
Alignment explanation
Indices: 74943045--74943204 Score: 200
Period size: 81 Copynumber: 2.0 Consensus size: 81
74943035 AGGAAGCGTC
* *
74943045 CTGGTGGCTATGCCACAATTTATCTAATCTGGTGCCTCTGCCACATATATCTGTCCTGGTGGCTA
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGCCTCTGCCACATATATCTGTCCTGGTGACTA
74943110 TGCCACAATTATCTGAT
66 TGCCACAA-TATCTGAT
* ** * *
74943127 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAATATATCTAATCTGGTGCCTCTGCCACATATATCTGT-CCTGGTGACT
*
74943190 -TCGTCACAATATCTG
65 AT-GCCACAATATCTG
74943205 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
80 15 0.22
81 38 0.56
82 15 0.22
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAATATATCTAATCTGGTGCCTCTGCCACATATATCTGTCCTGGTGACTA
TGCCACAATATCTGAT
Found at i:74951482 original size:29 final size:27
Alignment explanation
Indices: 74951464--74951533 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74951454 ATATTAAGTC
74951464 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
74951491 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
74951519 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
74951534 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:74951527 original size:28 final size:28
Alignment explanation
Indices: 74951464--74951561 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
74951454 ATATTAAGTC
*
74951464 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
74951491 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74951519 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74951548 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74951562 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74956676 original size:27 final size:27
Alignment explanation
Indices: 74956641--74956715 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
74956631 CCCCAAAATA
*
74956641 GGTAAAATGACCATAATGCCTCTGTAG
1 GGTAAAATGACCATAATGCCCCTGTAG
* * *
74956668 GGTAAAATGACTATAATACCCCTGTAT
1 GGTAAAATGACCATAATGCCCCTGTAG
* *
74956695 GGTAAAATGACGATTATGCCC
1 GGTAAAATGACCATAATGCCC
74956716 TTGTGTTCCA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCATAATGCCCCTGTAG
Found at i:74959061 original size:14 final size:14
Alignment explanation
Indices: 74959042--74959070 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74959032 TTTGGTTTAC
74959042 CAAGTAGTCCCTAT
1 CAAGTAGTCCCTAT
74959056 CAAGTAGTCCCTAT
1 CAAGTAGTCCCTAT
74959070 C
1 C
74959071 TATGGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (14 bp):
CAAGTAGTCCCTAT
Found at i:74961967 original size:13 final size:13
Alignment explanation
Indices: 74961945--74961991 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
74961935 AACAACCATA
*
74961945 AAAATTAAAAAAT
1 AAAATAAAAAAAT
74961958 AAAATAAAAAAAT
1 AAAATAAAAAAAT
**
74961971 AAAACGAAAAAAT
1 AAAATAAAAAAAT
74961984 AATAATAA
1 AA-AATAA
74961992 TAAACTCAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 25 0.89
14 3 0.11
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:74977623 original size:27 final size:26
Alignment explanation
Indices: 74977567--74977677 Score: 150
Period size: 27 Copynumber: 4.2 Consensus size: 26
74977557 AGCATGGCTG
* * *
74977567 CCAGAACAGATGATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
74977593 CCAGAACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
74977620 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
74977647 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
74977674 CCAG
1 CCAG
74977678 GACGCTTACT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 14 0.18
27 61 0.79
28 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:74979124 original size:24 final size:24
Alignment explanation
Indices: 74979089--74979137 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
74979079 CCAACACTGT
74979089 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
*
74979113 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
74979137 T
1 T
74979138 ATCCTGATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.41, G:0.04, T:0.33
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:74981507 original size:27 final size:27
Alignment explanation
Indices: 74981477--74981654 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74981467 ATATTGAGTC
* * * *
74981477 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
74981504 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74981531 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
74981559 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
74981586 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
74981613 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
74981640 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74981655 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:74981616 original size:82 final size:81
Alignment explanation
Indices: 74981498--74981653 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74981488 TGCTATATAA
* *
74981498 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
74981563 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
74981580 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
74981644 CACTTAGTGC
65 CACTTAGTGC
74981654 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:74988587 original size:27 final size:26
Alignment explanation
Indices: 74988538--74988640 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 26
74988528 GCTACACACC
* *
74988538 ACAGATGATGTGACAGAGTCACCAGA
1 ACAGATAATGTGACAGAGCCACCAGA
*
74988564 ACAGATAATCGTGGCAGAGCCACCAGA
1 ACAGATAAT-GTGACAGAGCCACCAGA
74988591 ACAGATATATGTGACAGAGCCACCAGA
1 ACAGATA-ATGTGACAGAGCCACCAGA
* * *
74988618 TCAGATAATTGTGGCATAGCCAC
1 ACAGATAA-TGTGACAGAGCCAC
74988641 TAGGACGCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.13
27 56 0.84
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
ACAGATAATGTGACAGAGCCACCAGA
Found at i:74990096 original size:23 final size:24
Alignment explanation
Indices: 74990052--74990127 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
74990042 CCAACAATGT
*
74990052 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
74990076 TCTCCCTTATCAG-TCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
74990099 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
74990123 TCTCC
1 TCTCC
74990128 TGATAGACTT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 22 0.45
24 27 0.55
ACGTcount: A:0.21, C:0.41, G:0.04, T:0.34
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:74991821 original size:50 final size:51
Alignment explanation
Indices: 74991750--74991910 Score: 137
Period size: 51 Copynumber: 3.2 Consensus size: 51
74991740 GGCTGTTACA
* * * * *
74991750 AAGTGCA-GCTACTACGTGTACCAGAT-GGTTAGGTCGCATGTGTAGTACT
1 AAGTGCAGGCTACTATGCGTACCAGATAGCTTAGATCACATGTGTAGTACT
* * * *
74991799 AAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCACATGTGTGGTGCT
1 AAGTGCAGGCTACTATGCGTACCAGATAGCTTAGATCACATGTGTAGTACT
* * ** * * * *
74991850 AAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAAGTGTGGTACT
1 AAGTGCAGGCTACTATGCGTACCAGATAGCTTAGATCACATGTGTAGTACT
* *
74991901 ATGTGAAGGC
1 AAGTGCAGGC
74991911 CACTTTGTGA
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 7 0.08
50 16 0.18
51 68 0.75
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (51 bp):
AAGTGCAGGCTACTATGCGTACCAGATAGCTTAGATCACATGTGTAGTACT
Found at i:74991852 original size:51 final size:51
Alignment explanation
Indices: 74991786--74991964 Score: 173
Period size: 51 Copynumber: 3.5 Consensus size: 51
74991776 GGTTAGGTCG
* * ***
74991786 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTTGATCA
* * *
74991837 CATGTGTGGTGCTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTTGATCA
* * * * * *
74991888 CAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CGA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGCGTAA-AAGATAGCTTTGATC-A
* * *
74991939 CAAGGGTGGTACTATGTGCAGGCCAC
1 CATGTGTGGTACTAAGTGCAGGCCAC
74991965 CGGGCATCCA
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
50 3 0.03
51 106 0.97
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTTGATCA
Found at i:74994124 original size:37 final size:37
Alignment explanation
Indices: 74994065--74994210 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
74994055 AGCTCAGACG
* * *
74994065 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
74994102 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74994139 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
74994176 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
74994211 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:74994481 original size:47 final size:47
Alignment explanation
Indices: 74994419--74994562 Score: 216
Period size: 47 Copynumber: 3.1 Consensus size: 47
74994409 ACACGTTTCG
* * *
74994419 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
74994466 CATTGGCCATTCGGCCTTATGTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
74994513 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
74994560 CAT
1 CAT
74994563 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:74996886 original size:85 final size:85
Alignment explanation
Indices: 74996757--74996935 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
74996747 TATTTTATTG
*
74996757 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
74996822 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGCCCA
74996842 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
74996907 TAGCTATAACATCTTGCCCA
66 TAGCCATAACATCTTGCCCA
74996927 CCCATGCTC
1 CCCATGCTC
74996936 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGCCCA
Found at i:74998750 original size:40 final size:40
Alignment explanation
Indices: 74998706--74999057 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
74998696 CCAGCATGAT
* * * *
74998706 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
74998746 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
74998786 TGCTCCTCAGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
74998826 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
74998866 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
74998906 TGCTCCTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
74998946 TGCTCTTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
74998986 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
74999026 TGCTCCTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
74999058 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 289 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:74999003 original size:23 final size:23
Alignment explanation
Indices: 74998937--74999003 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
74998927 GATATATCAC
74998937 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
74998960 TAGCTCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
74998977 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
74999000 TAGC
1 TAGC
74999004 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:75000404 original size:37 final size:37
Alignment explanation
Indices: 75000326--75000469 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
75000316 GCTCAGACGA
* * * *
75000326 AATCTCCACATGAAGTTATCGGGTCTTA-CCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75000362 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75000399 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75000436 AATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75000470 ATATATTTCC
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
36 25 0.25
37 77 0.75
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:75000740 original size:47 final size:47
Alignment explanation
Indices: 75000678--75001117 Score: 565
Period size: 47 Copynumber: 9.1 Consensus size: 47
75000668 ACACGTTTCG
* * *
75000678 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
75000725 CATTGGCCATTCGGCCTTATGTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75000772 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75000819 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATGCATGTTCACATTCATCA
* * *
75000870 CATGGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
75000917 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATGCATGTTCACATTCATCA
* *
75000968 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
**
75001015 CATTGGCCATTCGGCCTTATCACACATATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATATGCAT----GTTCACATTCATCA
* * *
75001068 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
75001115 CAT
1 CAT
75001118 AAAATCCTAA
Statistics
Matches: 343, Mismatches: 36, Indels: 28
0.84 0.09 0.07
Matches are distributed among these distances:
47 204 0.59
49 13 0.04
51 92 0.27
53 34 0.10
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:75000866 original size:145 final size:143
Alignment explanation
Indices: 75000678--75001117 Score: 582
Period size: 145 Copynumber: 3.0 Consensus size: 143
75000668 ACACGTTTCG
* *
75000678 CATTAGCCATTCGGCCTTACCA-CATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACCATATATATCATGTTCACATTCATCACATTGGCCATTCGGCC
**
75000741 TTATGTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATG
66 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATG
75000806 TTCACATTCATCA
131 TTCACATTCATCA
* *
75000819 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATGGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCAC-CATATATAT-CATGTTCACATTCATCACATTGGCCATTCGG
* * *
75000884 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATA
64 CCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--ACATA
** *
75000949 TACAGGTTCACATTCATCA
125 CGCATGTTCACATTCATCA
* **
75000968 CATTGGCCATTCGGCCTTATCA-CACATA-CGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACCATATATATCATGTTCACATTCATCACATTGGCCATTCGGCC
**
75001031 TTATCACACATATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
66 TTAT--CACATATATGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA
*
75001096 CGCATGTTCACATCCATCA
125 CGCATGTTCACATTCATCA
75001115 CAT
1 CAT
75001118 AAAATCCTAA
Statistics
Matches: 259, Mismatches: 26, Indels: 22
0.84 0.08 0.07
Matches are distributed among these distances:
141 20 0.08
143 7 0.03
144 1 0.00
145 115 0.44
147 37 0.14
149 43 0.17
151 36 0.14
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (143 bp):
CATTGGCCATTCGGCCTTATCACCATATATATCATGTTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATG
TTCACATTCATCA
Found at i:75000887 original size:98 final size:98
Alignment explanation
Indices: 75000678--75001117 Score: 719
Period size: 98 Copynumber: 4.5 Consensus size: 98
75000668 ACACGTTTCG
* * * **
75000678 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
75000743 AT---G--TCATATATGCATGTTCACATTCATCA
66 ATCACGCAT-ATATATACAGGTTCACATTCATCA
75000772 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
75000837 ATCACGCATATATATACAGGTTCACATTCATCA
66 ATCACGCATATATATACAGGTTCACATTCATCA
*
75000870 CATGGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
75000935 ATCACGCATATATATACAGGTTCACATTCATCA
66 ATCACGCATATATATACAGGTTCACATTCATCA
75000968 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
75001033 ATCACACATATATATATACGGGTTCACATTCATCA
66 ATCACGC--ATATATATACAGGTTCACATTCATCA
*
75001068 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
75001118 AAAATCCTAA
Statistics
Matches: 327, Mismatches: 12, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
94 62 0.19
97 1 0.00
98 189 0.58
99 1 0.00
100 74 0.23
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACGCATATATATACAGGTTCACATTCATCA
Found at i:75003435 original size:85 final size:85
Alignment explanation
Indices: 75003306--75003484 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
75003296 TATTTTATTG
*
75003306 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
75003371 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
75003391 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
75003456 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
75003476 CCCATGCTC
1 CCCATGCTC
75003485 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:75010792 original size:39 final size:38
Alignment explanation
Indices: 75010730--75010855 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 38
75010720 GACTTAATGT
* *
75010730 CTAGCAGGCCTCGTGCCAGTGATAAATTTAGGTTTATAC
1 CTAGCAGGCCTCGTGCGA-TGATAAATTCAGGTTTATAC
*
75010769 CTAGTAGGCCTCGTGCTGATGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGC-GATGATAAATTCAGGTTTATAC
* * * *
75010808 CTAGCAGGCCTCGTGCCGGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCGTG-CGATGATAAATTCAGGTTTATAC
75010847 CTAGCAGGC
1 CTAGCAGGC
75010856 AAATTGCCAG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 75 0.97
40 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (38 bp):
CTAGCAGGCCTCGTGCGATGATAAATTCAGGTTTATAC
Found at i:75018828 original size:39 final size:39
Alignment explanation
Indices: 75018706--75018830 Score: 153
Period size: 39 Copynumber: 3.2 Consensus size: 39
75018696 GACTTAATGT
* * *
75018706 CTAGCAGGCCTCGTGCCGGTGACAAATTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCAGTGATAAATTCAGGTTTATAC
* * *
75018745 CTAGCACG-CTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCATGCCAGTGATAAATTCAGGTTTATAC
* * * *
75018783 CTAGCAGGCCTTATGCCAGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCATGCCAGTGATAAATTCAGGTTTATAC
75018822 CTAGCAGGC
1 CTAGCAGGC
75018831 AATTTGCCAG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
38 36 0.47
39 40 0.53
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCATGCCAGTGATAAATTCAGGTTTATAC
Found at i:75019816 original size:25 final size:25
Alignment explanation
Indices: 75019783--75019847 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
75019773 TTAATAACAG
*
75019783 GGGCAAAGCCCTTTTTGATAAACTA
1 GGGCAAAGCCCTTTTCGATAAACTA
* *
75019808 GGGCAAAGCCCTTTTCGGTAAACTG
1 GGGCAAAGCCCTTTTCGATAAACTA
75019833 GGGCAAAGCCCTTTT
1 GGGCAAAGCCCTTTT
75019848 AGCACTTCCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
GGGCAAAGCCCTTTTCGATAAACTA
Found at i:75020084 original size:27 final size:27
Alignment explanation
Indices: 75020054--75020213 Score: 198
Period size: 27 Copynumber: 5.9 Consensus size: 27
75020044 GGCAAAATGA
* * *
75020054 TAATTTTACCCCACAAGGGTATCTCAG
1 TAATTCTACCCTACAAGGGTATTTCAG
*
75020081 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCAG
*
75020108 TATTTCTACCCTAC-AGGGTTATTTCAG
1 TAATTCTACCCTACAAGGG-TATTTCAG
* * *
75020135 TAATTCTACTCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCAG
*
75020162 TAATTCTACCCTAC-AGGGTTATTTTAG
1 TAATTCTACCCTACAAGGG-TATTTCAG
*
75020189 TAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
75020214 GGTATTTTAC
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 7 0.06
27 100 0.88
28 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCAG
Found at i:75020214 original size:54 final size:54
Alignment explanation
Indices: 75020054--75020217 Score: 231
Period size: 54 Copynumber: 3.0 Consensus size: 54
75020044 GGCAAAATGA
* * * * **
75020054 TAATTTTACCCCACAAGGG-TATCTCAGTAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTAC-AGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
* *
75020108 TATTTCTACCCTACAGGGTTATTTCAGTAATTCTACTCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
*
75020162 TAATTCTACCCTACAGGGTTATTTTAGTAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
75020216 TA
1 TA
75020218 TTTTACAAAT
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.04
54 94 0.96
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGGTATTTCGG
Found at i:75020356 original size:27 final size:27
Alignment explanation
Indices: 75020202--75020355 Score: 152
Period size: 27 Copynumber: 5.8 Consensus size: 27
75020192 TTCTACCCTA
*
75020202 CAGGGGTATTTCGGT-ATTTTACAAA-
1 CAGGGGTATTTTGGTAATTTTACAAAC
** * * * * *
75020227 TTGAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* * *
75020255 CAGGGGTATTTTGGTCATTTTAGAAGC
1 CAGGGGTATTTTGGTAATTTTACAAAC
75020282 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
75020309 CAATGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
75020336 TAGGGGTATTTT-GTAATTTT
1 CAGGGGTATTTTGGTAATTTT
75020356 TCTAATCGAG
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
25 1 0.01
26 18 0.17
27 83 0.81
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:75022837 original size:25 final size:25
Alignment explanation
Indices: 75022809--75022878 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
75022799 CTCTTTTAAT
*
75022809 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75022834 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
75022859 AACTGGGGCAAAACCCTTTT
1 AACTGGGGCAAAGCCCTTTT
75022879 AACACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:75023115 original size:27 final size:27
Alignment explanation
Indices: 75023085--75023299 Score: 222
Period size: 27 Copynumber: 8.0 Consensus size: 27
75023075 GGCAAAATGG
* * *
75023085 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
75023112 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
75023139 TATTTTTACCCTACAAGGCTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
75023166 TAATTGTACCCTACAGGGGTGTTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
75023193 TAATTCTACCCTAC-AGCGGTATTTCGG
1 TAATTCTACCCTACAAG-GGTATTTCGA
75023220 TAATTCTACCCTAC-AGGGTTATTTC-A
1 TAATTCTACCCTACAAGGG-TATTTCGA
* *
75023246 GTAATTATACCCTACAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
75023273 GTAATTCTACCCTATAGGGGTATTTCG
1 -TAATTCTACCCTACAAGGGTATTTCG
75023300 GTATTTTACA
Statistics
Matches: 159, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 153 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:75023146 original size:54 final size:54
Alignment explanation
Indices: 75023085--75023308 Score: 267
Period size: 54 Copynumber: 4.2 Consensus size: 54
75023075 GGCAAAATGG
* *
75023085 TAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGA
1 TAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * * * *
75023139 TATTTTTACCCTACAAGGCTATTTCGATAATTGTACCCTACAGGGGTGTTTCAA
1 TAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * *
75023193 TAATTCTACCCTAC-AGCGGTATTTCGGTAATTCTACCCTACAGGGTTATTTC-A
1 TAATTTTACCCTACAAG-GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
* * * *
75023246 GTAATTATACCCTACAGGGGTATTTC-AGTAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTTTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGA
75023301 T-ATTTTAC
1 TAATTTTAC
75023309 AAATCGAGAG
Statistics
Matches: 144, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
53 9 0.06
54 134 0.93
55 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (54 bp):
TAATTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGA
Found at i:75023230 original size:81 final size:81
Alignment explanation
Indices: 75023084--75023302 Score: 287
Period size: 81 Copynumber: 2.7 Consensus size: 81
75023074 GGGCAAAATG
* * * * * * * *
75023084 GTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATTTTTACC
1 GTAATTATACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
75023149 CTACAAGGCTATTTC-
66 CTACAAGGCTATTTCA
* * *
75023164 GATAATTGTACCCTACAGGGGTGTTTCAATAATTCTACCCTACAGCGGTATTTCGGTAATTCTAC
1 G-TAATTATACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
* *
75023229 CCTACAGGGTTATTTCA
65 CCTACAAGGCTATTTCA
* *
75023246 GTAATTATACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTA
1 GTAATTATACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTA
75023303 TTTTACAAAT
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 118 0.98
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTATACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
CTACAAGGCTATTTCA
Found at i:75023348 original size:27 final size:27
Alignment explanation
Indices: 75023260--75023455 Score: 132
Period size: 27 Copynumber: 7.3 Consensus size: 27
75023250 TTATACCCTA
* * **
75023260 CAGGGGTATTTCAGTAATTCTACCCTAT
1 CAGGGGTATTTCGGTAATTTTA-CAAAT
75023288 -AGGGGTATTTCGGT-ATTTTACAAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
* ** *
75023313 C-GAGAGTATTTCAATAATTTCACAAAT
1 CAG-GGGTATTTCGGTAATTTTACAAAT
*
75023340 CAGGGGTATTTTGGTAATTTTACAAGAT
1 CAGGGGTATTTCGGTAATTTTACAA-AT
* *
75023368 -AGGGGTATTTTGGTAAATTTACAAA-
1 CAGGGGTATTTCGGTAATTTTACAAAT
* * ** *
75023393 CTAGTGATATTTTAGTAATTTTACAAAC
1 C-AGGGGTATTTCGGTAATTTTACAAAT
* * * *
75023421 CAAGGGTATTTTGGTAATTTTTCTAAT
1 CAGGGGTATTTCGGTAATTTTACAAAT
*
75023448 CAAGGGTA
1 CAGGGGTA
75023456 AAATGATAAT
Statistics
Matches: 135, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
25 4 0.03
26 15 0.11
27 112 0.83
28 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTCGGTAATTTTACAAAT
Found at i:75023428 original size:81 final size:80
Alignment explanation
Indices: 75023286--75023441 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 80
75023276 ATTCTACCCT
* * * *
75023286 ATAGGGGTATTTCGGTATTTTACAAATCGAGAGTATTTCAATAATTTCACAAATCAGGGGTATTT
1 ATAGGGGTATTTCGGTAATTTACAAATAGAGAGTATTTCAATAATTTCACAAACCAAGGGTATTT
75023351 TGGTAATTTTACAAG
66 TGGTAATTTTACAAG
* * * * *
75023366 ATAGGGGTATTTTGGTAAATTTACAAACTAGTGA-TATTTTAGTAATTTTACAAACCAAGGGTAT
1 ATAGGGGTATTTCGGT-AATTTACAAA-TAGAGAGTATTTCAATAATTTCACAAACCAAGGGTAT
75023430 TTTGGTAATTTT
64 TTTGGTAATTTT
75023442 TCTAATCAAG
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
80 15 0.23
81 46 0.71
82 4 0.06
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (80 bp):
ATAGGGGTATTTCGGTAATTTACAAATAGAGAGTATTTCAATAATTTCACAAACCAAGGGTATTT
TGGTAATTTTACAAG
Found at i:75030372 original size:37 final size:37
Alignment explanation
Indices: 75030329--75030404 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
75030319 CTAGGAAAGT
75030329 TAGTTCTGTCTTTAACCAAAAACTATGCCTTTTCTAG
1 TAGTTCTGTCTTTAACCAAAAACTATGCCTTTTCTAG
75030366 TAGTTCTGTCTTTAACCAAAAACTATGCCTTTTCTAG
1 TAGTTCTGTCTTTAACCAAAAACTATGCCTTTTCTAG
75030403 TA
1 TA
75030405 AACATAATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.41
Consensus pattern (37 bp):
TAGTTCTGTCTTTAACCAAAAACTATGCCTTTTCTAG
Found at i:75032773 original size:43 final size:42
Alignment explanation
Indices: 75032618--75032774 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 42
75032608 TGCGTTTTCC
* *
75032618 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTCTGTTTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TTCTG-ATTACA
* * * * * * *
75032662 TGTAAGACCATGTATGGGACATCGACATCG-TATCTAATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGAT-TCTGATTACA
** * * *
75032704 TGTAAGACCTTGTCTGGGA-TTGTGGCATCGATGTTTGATTGCA
1 TGTAAGACCACGTCTGGGACAT-TGGCATCGAT-TCTGATTACA
75032747 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
75032775 TGTATATGCT
Statistics
Matches: 87, Mismatches: 22, Indels: 9
0.74 0.19 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.31
43 33 0.38
44 26 0.30
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTCTGATTACA
Found at i:75033856 original size:55 final size:55
Alignment explanation
Indices: 75033757--75033860 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
75033747 TAGGCTTGAG
* * * *
75033757 CACGGCCAAGGCACACGGGTGTGTGGCTAGCCGTGTGACTCAAGTCAGTGTCGAC
1 CACGGCCAAGACACACGGGTGTGTGGCTAACAGTGTGACGCAAGTCAGTGTCGAC
*
75033812 CACGGCCAAGACACACGGGTGTGTCTTG-TAACAGTGTGA-GCAAGTCAGT
1 CACGGCCAAGACACACGGGTGTG--TGGCTAACAGTGTGACGCAAGTCAGT
75033861 ATGTATGCCC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
55 31 0.74
56 9 0.21
57 2 0.05
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (55 bp):
CACGGCCAAGACACACGGGTGTGTGGCTAACAGTGTGACGCAAGTCAGTGTCGAC
Found at i:75037972 original size:99 final size:99
Alignment explanation
Indices: 75037777--75037995 Score: 244
Period size: 99 Copynumber: 2.2 Consensus size: 99
75037767 CAATTTAACA
** * * *
75037777 GTCATATTGGAAGTAGCCTCCCAGAAGATGGAGTATATACCGCTTAACTGGCTTACTTGGAATGT
1 GTCATATTGGAAGTAGCCTCCCAGAAGATGGAGTATATAAAGATAAACTGGCTTACTTGGAATAT
*** * * * *
75037842 AGGGTTAACTTTGTTAAAGCCAATAATCTCAATG
66 AGGGTTAACTCACTTAAAGCAAAAAAACTCAACG
* * *
75037876 GTCATATTGGAAGTAGCCTCCCAGAAGATGGAGTTTATAAAGATAAA-TCGGTTTACTTGGAGTA
1 GTCATATTGGAAGTAGCCTCCCAGAAGATGGAGTATATAAAGATAAACT-GGCTTACTTGGAATA
*
75037940 TAGGGTTAACTCACTTCAAG-AAAAAACACTCAACG
65 TAGGGTTAACTCACTTAAAGCAAAAAA-ACTCAACG
* *
75037975 GTCATGTTCGAAGTAGCCTCC
1 GTCATATTGGAAGTAGCCTCC
75037996 AGGATGAGCT
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
98 5 0.05
99 95 0.95
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (99 bp):
GTCATATTGGAAGTAGCCTCCCAGAAGATGGAGTATATAAAGATAAACTGGCTTACTTGGAATAT
AGGGTTAACTCACTTAAAGCAAAAAAACTCAACG
Found at i:75038149 original size:29 final size:29
Alignment explanation
Indices: 75038107--75038165 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
75038097 TATAGTCCTC
75038107 AAAGGGAAGATTTAGTCAATCCAAGTAGG
1 AAAGGGAAGATTTAGTCAATCCAAGTAGG
75038136 AAAGGGAAGATTTAGTCAATCCAAGTAGG
1 AAAGGGAAGATTTAGTCAATCCAAGTAGG
75038165 A
1 A
75038166 TGATAACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.10, G:0.27, T:0.20
Consensus pattern (29 bp):
AAAGGGAAGATTTAGTCAATCCAAGTAGG
Found at i:75038658 original size:21 final size:21
Alignment explanation
Indices: 75038617--75038658 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75038607 AAGAAAGGAA
* **
75038617 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
75038638 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
75038659 GTTATCACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:75041039 original size:47 final size:47
Alignment explanation
Indices: 75040985--75041225 Score: 338
Period size: 47 Copynumber: 5.1 Consensus size: 47
75040975 TTAGGATTTT
** * *
75040985 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
75041032 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75041079 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
75041126 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
75041173 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75041220 ATGTGA
1 ATGTGA
75041226 AATATGTATG
Statistics
Matches: 179, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 179 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75041085 original size:22 final size:22
Alignment explanation
Indices: 75041014--75041132 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
75041004 GTATATATGA
75041014 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * * *
75041036 GATGAATG-TGAATATGCATATATGT
1 GAT-AAGGCCGAAT-GGC-CA-ATGT
75041061 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
75041083 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
75041108 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
75041130 GAT
1 GAT
75041133 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:75041093 original size:94 final size:94
Alignment explanation
Indices: 75040985--75041321 Score: 342
Period size: 94 Copynumber: 3.6 Consensus size: 94
75040975 TTAGGATTTT
** * * *
75040985 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAATA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAATA
*
75041050 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCTA
* * * **
75041079 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAATA
*
75041144 TGCATATGTGTGATAAGGCCGAATGGCTA
66 TGCATATATGTGATAAGGCCGAATGGCTA
* * * * * *
75041173 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCTGAATGGCTAATGTGA-AATATGTATGA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGA-ATG--TGA
* *
75041237 GATATG--TATATGTGGTAAAGCCGAATGGCTA
63 -ATATGCATATATGTGATAAGGCCGAATGGCTA
** * * * *
75041268 ATGTGAAATGTGTATGAGATATGC--ATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATGTG--ATGAATGTGA-ACATGCATATATGTGATAAAGCCGAATGGCCAATGTGA
75041322 AATATATATA
Statistics
Matches: 205, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.00
94 132 0.64
95 27 0.13
96 30 0.15
97 10 0.05
98 5 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAATA
TGCATATATGTGATAAGGCCGAATGGCTA
Found at i:75041153 original size:23 final size:23
Alignment explanation
Indices: 75041079--75041153 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
75041069 CGAATGGCCA
75041079 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
75041102 ATGTG-TGATAAG-GCCGAATGGCCA-
1 ATGTGATGA-ATGTG-AGCAT-G-CAT
75041126 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
75041149 ATGTG
1 ATGTG
75041154 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:75041358 original size:52 final size:48
Alignment explanation
Indices: 75041195--75041381 Score: 268
Period size: 48 Copynumber: 3.8 Consensus size: 48
75041185 TGAACATGCA
*
75041195 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
75041243 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75041291 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
* *
75041343 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
75041382 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 79 0.64
49 1 0.01
50 2 0.02
51 1 0.01
52 39 0.31
53 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:75041364 original size:100 final size:96
Alignment explanation
Indices: 75041196--75041381 Score: 275
Period size: 100 Copynumber: 1.9 Consensus size: 96
75041186 GAACATGCAT
* * *
75041196 ATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
*
75041261 ATGGCTAATGTGAAATGTGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
75041292 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
*
75041356 GCCAAATGGCTAGTGTGAAATATGTA
61 GCCAAATGGCTAATGTGAAATATGTA
75041382 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
98 1 0.01
99 1 0.01
100 51 0.64
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:75041672 original size:37 final size:37
Alignment explanation
Indices: 75041527--75041671 Score: 263
Period size: 37 Copynumber: 3.9 Consensus size: 37
75041517 GGAAATATAT
75041527 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
75041564 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75041601 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75041638 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75041672 TCGTCTGAGC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75042997 original size:40 final size:40
Alignment explanation
Indices: 75042942--75043133 Score: 366
Period size: 40 Copynumber: 4.8 Consensus size: 40
75042932 GAGAATTGAG
75042942 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75042982 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75043022 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75043062 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75043102 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
75043134 ATCATGCTGG
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 149 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75044943 original size:21 final size:21
Alignment explanation
Indices: 75044902--75044943 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75044892 AAGAAAGGAA
* **
75044902 ATAATAAAAGAAATACTAAGG
1 ATAATAAAAGAAAAAAAAAGG
75044923 ATAATAAAAGAAAAAAAAAGG
1 ATAATAAAAGAAAAAAAAAGG
75044944 GGTTATCACC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.69, C:0.02, G:0.14, T:0.14
Consensus pattern (21 bp):
ATAATAAAAGAAAAAAAAAGG
Found at i:75047323 original size:47 final size:47
Alignment explanation
Indices: 75047269--75047509 Score: 338
Period size: 47 Copynumber: 5.1 Consensus size: 47
75047259 TTAGGATTTT
** * *
75047269 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
75047316 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75047363 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75047410 ATGTGATGAATGTGAGCATACATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
75047457 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75047504 ATGTGA
1 ATGTGA
75047510 AATATGTATG
Statistics
Matches: 176, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 176 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75047369 original size:22 final size:22
Alignment explanation
Indices: 75047298--75047416 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 22
75047288 GTATATATGA
75047298 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * * *
75047320 GATGAATG-TGAATATGCATATATGT
1 GAT-AAGGCCGAAT-GGC-CA-ATGT
75047345 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
75047367 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
75047392 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
75047414 GAT
1 GAT
75047417 GAATGTGAGC
Statistics
Matches: 71, Mismatches: 12, Indels: 28
0.64 0.11 0.25
Matches are distributed among these distances:
22 23 0.32
23 14 0.20
24 14 0.20
25 20 0.28
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:75047637 original size:50 final size:48
Alignment explanation
Indices: 75047479--75047663 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
75047469 TGAACATGCA
75047479 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75047527 TATATGTGGTAAAGCTGAATGGCTAATGTGAAATGTGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
75047575 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGATATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
75047625 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
75047664 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:75047645 original size:98 final size:96
Alignment explanation
Indices: 75047480--75047677 Score: 290
Period size: 98 Copynumber: 2.0 Consensus size: 96
75047470 GAACATGCAT
* *
75047480 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
* *
75047545 ATGGCTAATGTGAAATGTGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTAGGAGATATGC
*
75047576 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGATATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
* * *
75047640 CGAATGGCTAGTGTGAAATATGTAGGCGATGTGC
63 CGAATGGCTAATGTGAAATATGTAGGAGATATGC
75047674 ATAT
1 ATAT
75047678 ATTGTGGCCG
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.30
97 2 0.02
98 61 0.67
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTAGGAGATATGC
Found at i:75047688 original size:96 final size:95
Alignment explanation
Indices: 75047474--75047703 Score: 266
Period size: 98 Copynumber: 2.4 Consensus size: 95
75047464 GAATATGAAC
*
75047474 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATGTATATGTGGTA
1 ATGCATATA--TGGT-AAGCCGAATGGC-AATGTGAAAATATATATGAGATATGTATATGTGGTA
* * *
75047538 AAGCTGAATGGCTAATGTGAAATGTGTATGAGAT
62 AAGCCGAATGGCTAATGTGAAATATGTAGGAGAT
* *
75047572 ATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGATATATGTATATGTGGTAA
1 ATGCATATATGGT-AAGCCGAATGG-CAATGTGAAA-ATATATATGAGATATGTATATGTGGTAA
* *
75047637 AGCCGAATGGCTAGTGTGAAATATGTAGGCGAT
63 AGCCGAATGGCTAATGTGAAATATGTAGGAGAT
* * * *
75047670 GTGCATATATTGT-GGCCGAACGGCCAATGTGAAA
1 ATGCATATATGGTAAGCCGAATGG-CAATGTGAAA
75047704 GGTGTGTATT
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
96 40 0.35
97 3 0.03
98 72 0.63
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (95 bp):
ATGCATATATGGTAAGCCGAATGGCAATGTGAAAATATATATGAGATATGTATATGTGGTAAAGC
CGAATGGCTAATGTGAAATATGTAGGAGAT
Found at i:75047954 original size:37 final size:37
Alignment explanation
Indices: 75047809--75047953 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
75047799 TTAAATATAT
*
75047809 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75047846 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75047883 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75047920 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75047954 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75058942 original size:10 final size:10
Alignment explanation
Indices: 75058927--75058970 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
75058917 TAATTTTAAG
75058927 ATTTAT-TTT
1 ATTTATCTTT
75058936 CATTTATCTTT
1 -ATTTATCTTT
75058947 ATTTATCTTT
1 ATTTATCTTT
*
75058957 AATTATCTTT
1 ATTTATCTTT
75058967 ATTT
1 ATTT
75058971 GATTGTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 28 0.90
11 3 0.10
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:75059741 original size:17 final size:18
Alignment explanation
Indices: 75059709--75059742 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75059699 TATTTTTCAT
*
75059709 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGAAATTTA
75059727 TTTAA-TTTCGAAATTT
1 TTTAATTTTCGAAATTT
75059743 CGATTCAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCGAAATTTA
Found at i:75062725 original size:14 final size:15
Alignment explanation
Indices: 75062693--75062727 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
75062683 CAACCCAATT
*
75062693 TTTATTTCTTTTTAT
1 TTTATTTCTTTTTAC
75062708 TTTATTTCTTTTT-C
1 TTTATTTCTTTTTAC
75062722 TTTATT
1 TTTATT
75062728 ATTTTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTATTTCTTTTTAC
Found at i:75062748 original size:21 final size:21
Alignment explanation
Indices: 75062704--75062770 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
75062694 TTATTTCTTT
** *
75062704 TTATTTTATTTCTTTTTCTTTA
1 TTATTTTATTT-TAATTATTTA
75062726 TTATTTTATTTTAATTATTTA
1 TTATTTTATTTTAATTATTTA
* *
75062747 TTATTTTATCTTAATGATTTA
1 TTATTTTATTTTAATTATTTA
75062768 TTA
1 TTA
75062771 CTTAATTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 29 0.73
22 11 0.28
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (21 bp):
TTATTTTATTTTAATTATTTA
Found at i:75063593 original size:10 final size:10
Alignment explanation
Indices: 75063580--75063629 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
75063570 ATTTAATTTC
75063580 ATTTATCTTT
1 ATTTATCTTT
75063590 ATTTATCTTT
1 ATTTATCTTT
*
75063600 AATTATCTTT
1 ATTTATCTTT
75063610 ATTTAT-TTGT
1 ATTTATCTT-T
*
75063620 GTTTATCTTT
1 ATTTATCTTT
75063630 TAGAATTTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:75064382 original size:17 final size:18
Alignment explanation
Indices: 75064350--75064383 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75064340 TATTCTTCAT
*
75064350 TTTAAGTTTCGTAATTTA
1 TTTAAGTTTCGCAATTTA
75064368 TTTAA-TTTCGCAATTT
1 TTTAAGTTTCGCAATTT
75064384 CGATTCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (18 bp):
TTTAAGTTTCGCAATTTA
Found at i:75068000 original size:25 final size:26
Alignment explanation
Indices: 75067972--75068029 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
75067962 TATTTAGTAT
75067972 AAAATATT-AATAATTTAAT-AAATTG
1 AAAAT-TTAAATAATTTAATAAAATTG
75067997 AAAATTTAAATAATTTAATAAAATTG
1 AAAATTTAAATAATTTAATAAAATTG
75068023 -AAATTTA
1 AAAATTTA
75068030 GGAGAAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.06
25 23 0.74
26 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (26 bp):
AAAATTTAAATAATTTAATAAAATTG
Found at i:75076785 original size:30 final size:29
Alignment explanation
Indices: 75076749--75076808 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
75076739 CATTTAATAC
*
75076749 AAACTTTGGAAAAATTACATTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTT-CCCCT
* * *
75076779 AAACTTTTGCATAATTACAATTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTCCCCT
75076808 A
1 A
75076809 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (29 bp):
AAACTTTGGAAAAATTACAATTTTCCCCT
Found at i:75079985 original size:23 final size:23
Alignment explanation
Indices: 75079927--75079978 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
75079917 CACGTTTACC
75079927 ACTATTAGTAGCTTTGCTGCGTT
1 ACTATTAGTAGCTTTGCTGCGTT
* *
75079950 ACTATTAGCAGCTTTGCTGTGTT
1 ACTATTAGTAGCTTTGCTGCGTT
75079973 ACTATT
1 ACTATT
75079979 CATAGCTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (23 bp):
ACTATTAGTAGCTTTGCTGCGTT
Found at i:75085057 original size:49 final size:49
Alignment explanation
Indices: 75084957--75085081 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 49
75084947 TGTGGTGTGT
**
75084957 CAGTGTAAGACCTGTCTGGGACAT-GACATCGACACCTATAGATGAGCGC
1 CAGTGTAAGACCTGTCTGGGACATGGACATCGACACCTATA-ATGAAAGC
* *
75085006 CAGTGTAAGACCTGTCTGGGACATGGA-ATTGGCCACACTAT-ATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGACA-TCGACAC-CTATAATGAAAGC
*
75085055 CAGTGTAAGACCATGTCTGGGAAATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
75085082 CGTCGGCATC
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 43 0.64
50 20 0.30
51 4 0.06
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGACATCGACACCTATAATGAAAGC
Found at i:75096024 original size:31 final size:31
Alignment explanation
Indices: 75095983--75096046 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75095973 CCTTTTCATA
*
75095983 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75096014 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75096045 TT
1 TT
75096047 ACTGTACGGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75096313 original size:23 final size:23
Alignment explanation
Indices: 75096259--75096376 Score: 200
Period size: 23 Copynumber: 5.1 Consensus size: 23
75096249 CCTAGCCTCT
*
75096259 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
75096282 TTTTAATAACTGAGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
75096306 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
75096329 TTTAATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75096352 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75096375 TT
1 TT
75096377 ATTCACTTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
23 68 0.76
24 21 0.24
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:75096456 original size:20 final size:20
Alignment explanation
Indices: 75096428--75096494 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75096418 TTATGATTAC
*
75096428 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75096448 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75096468 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75096488 ACCATGT
1 ATCATGT
75096495 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75104166 original size:31 final size:31
Alignment explanation
Indices: 75104125--75104188 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
75104115 CCTTTTCATA
* * *
75104125 TTTCATATTTCATAACACTGTGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
75104156 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
75104187 TT
1 TT
75104189 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:75104457 original size:23 final size:23
Alignment explanation
Indices: 75104403--75104521 Score: 220
Period size: 23 Copynumber: 5.1 Consensus size: 23
75104393 CCTAGCCTCT
*
75104403 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75104426 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
75104450 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75104473 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75104496 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75104519 TTT
1 TTT
75104522 TCACTTCCTC
Statistics
Matches: 94, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
23 72 0.77
24 22 0.23
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:75104599 original size:20 final size:20
Alignment explanation
Indices: 75104571--75104637 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75104561 TTATGATTAC
*
75104571 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75104591 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75104611 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75104631 ACCATGT
1 ATCATGT
75104638 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75110108 original size:13 final size:13
Alignment explanation
Indices: 75110090--75110116 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75110080 AACGAAGCAG
75110090 GACACGGCCATGT
1 GACACGGCCATGT
75110103 GACACGGCCATGT
1 GACACGGCCATGT
75110116 G
1 G
75110117 CACCAACACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGGCCATGT
Found at i:75112970 original size:27 final size:27
Alignment explanation
Indices: 75112939--75113116 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75112929 TAAATTGTAC
75112939 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75112966 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75112992 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75113020 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75113048 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75113075 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75113102 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75113117 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75113053 original size:82 final size:81
Alignment explanation
Indices: 75112940--75113095 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75112930 AAATTGTACA
* *
75112940 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75113004 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75113021 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75113086 TGCGAGTTGA
65 TGCGAATTGA
75113096 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75113107 original size:82 final size:81
Alignment explanation
Indices: 75112936--75113116 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75112926 GATTAAATTG
* *
75112936 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75113001 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75113017 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75113081 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75113099 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75113117 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75114893 original size:18 final size:18
Alignment explanation
Indices: 75114872--75114924 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
75114862 TTTTTAAGAC
75114872 TTTTATTTATTTTTTTAT
1 TTTTATTTATTTTTTTAT
*
75114890 TTTTATTT-TTAATTTTAT
1 TTTTATTTATT-TTTTTAT
* *
75114908 CTTTATTTATCTTTTTA
1 TTTTATTTATTTTTTTA
75114925 AATTACTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 26 0.90
19 1 0.03
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTTATTTTTTTAT
Found at i:75114894 original size:6 final size:6
Alignment explanation
Indices: 75114872--75114915 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
75114862 TTTTTAAGAC
* *
75114872 TTTTAT TTATT-T TTTTAT TTTTAT TTTTAA TTTTAT CTTTAT TT
1 TTTTAT TT-TTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
75114916 ATCTTTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 2 0.06
6 28 0.88
7 2 0.06
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:75123687 original size:6 final size:6
Alignment explanation
Indices: 75123670--75123731 Score: 63
Period size: 6 Copynumber: 10.3 Consensus size: 6
75123660 ATTTGAAACT
* * * * *
75123670 AAAATA AGAATA AAAATA AAAATG AAAATG AAAATA AAGAGA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
75123718 AAAGAT- AAAATA AA
1 AAA-ATA AAAATA AA
75123732 TGGACTCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
5 2 0.04
6 42 0.91
7 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:75123697 original size:24 final size:23
Alignment explanation
Indices: 75123670--75123731 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
75123660 ATTTGAAACT
* *
75123670 AAAATAAGAATAAAAATAAAAATG
1 AAAATAA-AATAAAAAGAAAAATA
*
75123694 AAAATGAAAATAAAGAGAAAAATA
1 AAAAT-AAAATAAAAAGAAAAATA
75123718 AAAGATAAAATAAA
1 AAA-ATAAAATAAA
75123732 TGGACTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (23 bp):
AAAATAAAATAAAAAGAAAAATA
Found at i:75125332 original size:22 final size:22
Alignment explanation
Indices: 75125256--75125333 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
75125246 CAAAACAAAG
* * *
75125256 TAATAAAACTAATAAT-CATAA
1 TAATAAAAATAATAATGAAGAA
75125277 TAAATAACAAAT-ATAATGAAGAA
1 T-AATAA-AAATAATAATGAAGAA
* ** *
75125300 TAACAGTAATAATAATGAAGAC
1 TAATAAAAATAATAATGAAGAA
75125322 TAATAAAAATAA
1 TAATAAAAATAA
75125334 ATAAATAAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
21 4 0.09
22 32 0.74
23 7 0.16
ACGTcount: A:0.63, C:0.06, G:0.06, T:0.24
Consensus pattern (22 bp):
TAATAAAAATAATAATGAAGAA
Found at i:75135594 original size:48 final size:46
Alignment explanation
Indices: 75135485--75135696 Score: 187
Period size: 48 Copynumber: 4.5 Consensus size: 46
75135475 TATGTCTACT
* * * * *
75135485 AGTGTAAGACATGTCTGGGATATGCATCAGCCAC-AG-GATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGACAT-A-AGCC
*
75135531 AGTGTAAGACATGTCTGGGACATACATCGGCCTCAAGACATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGACA--TAAGCC
* * * * * *
75135579 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGAC-ATAAGCC
* * * *
75135625 AGTGTAAGACATGTCTGGGACATACATCGGTCTCGCGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGACAT--AAGCC
*
75135673 AGTGTAAGACTTGTCTGGGACATA
1 AGTGTAAGACATGTCTGGGACATA
75135697 GTTTCAGCTT
Statistics
Matches: 137, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.47
47 2 0.01
48 66 0.48
49 2 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGACATAAGCC
Found at i:75135646 original size:46 final size:46
Alignment explanation
Indices: 75135485--75135653 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 46
75135475 TATGTCTACT
* * * * *
75135485 AGTGTAAGACATGTCTGGGATATGCATCAGCCACAG-GATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATACATC-GACATAGAGACGAGAGCC
* * *
75135531 AGTGTAAGACATGTCTGGGACATACATCGGCCTCA-AGAC-ATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATACATCGACAT-AGAGACGA---GAGCC
* * *
75135579 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATACATCGACATAGAGACGAGAGCC
75135625 AGTGTAAGACATGTCTGGGACATACATCG
1 AGTGTAAGACATGTCTGGGACATACATCG
75135654 GTCTCGCGAT
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 60 0.59
48 38 0.37
49 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATACATCGACATAGAGACGAGAGCC
Found at i:75135646 original size:94 final size:94
Alignment explanation
Indices: 75135485--75135695 Score: 280
Period size: 94 Copynumber: 2.2 Consensus size: 94
75135475 TATGTCTACT
* * *
75135485 AGTGTAAGACATGTCTGGGATATGCATCAGCCACAGGATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGACACAGGACGAGAGCCAGTGTAAGACATGTCTGGG
**
75135550 ACATACATCGGCCTCAAGACATTTAAGCC
66 ACATACATCGGCCTCAAGACATACAAGCC
** *
75135579 AGTGTAAGACATGTCTGGGACATGCATC-GACATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGACACAG-GACGAGAGCCAGTGTAAGACATGTCTGG
* ** * *
75135643 GACATACATCGGTCTCGCGATATACAAGCT
65 GACATACATCGGCCTCAAGACATACAAGCC
*
75135673 AGTGTAAGACTTGTCTGGGACAT
1 AGTGTAAGACATGTCTGGGACAT
75135696 AGTTTCAGCT
Statistics
Matches: 102, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 4 0.04
94 98 0.96
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGACACAGGACGAGAGCCAGTGTAAGACATGTCTGGG
ACATACATCGGCCTCAAGACATACAAGCC
Found at i:75136886 original size:13 final size:13
Alignment explanation
Indices: 75136865--75136899 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
75136855 CCATGTGAGG
*
75136865 GACATGGGCTATA
1 GACACGGGCTATA
75136878 GACACGGGCTATA
1 GACACGGGCTATA
75136891 GACACGGGC
1 GACACGGGC
75136900 ATGTGTCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.23, G:0.34, T:0.14
Consensus pattern (13 bp):
GACACGGGCTATA
Found at i:75139075 original size:27 final size:26
Alignment explanation
Indices: 75139040--75139213 Score: 186
Period size: 27 Copynumber: 6.5 Consensus size: 26
75139030 TGGATAAGTT
* **
75139040 GTAGAATTATCGAAATACCTTTGTAAG
1 GTAGAATTACCGAAATACCCCTGT-AG
*
75139067 GTAGCATTACCGAAATACCCCTGTAG
1 GTAGAATTACCGAAATACCCCTGTAG
*
75139093 GCTAGAATTACCGAAATACCCCTCTAG
1 G-TAGAATTACCGAAATACCCCTGTAG
*
75139120 GATAGAATTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTA-G
* *
75139148 GTAGAAATACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTA-G
* * *
75139175 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGT-AG
*
75139202 GTAAAATTACCG
1 GTAGAATTACCG
75139214 TTTTGCCCCT
Statistics
Matches: 126, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 121 0.96
28 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCCTGTAG
Found at i:75139130 original size:54 final size:53
Alignment explanation
Indices: 75139040--75139213 Score: 213
Period size: 54 Copynumber: 3.2 Consensus size: 53
75139030 TGGATAAGTT
* ** * *
75139040 GTAGAATTATCGAAATACCTTTGTAAGGTAGCATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCGAAATACCCTTGTAGG
* *
75139094 CTAGAATTACCGAAATACCCCTCTAGGATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG-TAGAATTACCGAAATACCCTTGTAGG
* * * *
75139148 GTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTA-GGTAGAATTACCGAAATACCCTTGTAGG
*
75139202 GTAAAATTACCG
1 GTAGAATTACCG
75139214 TTTTGCCCCT
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 3 0.03
54 97 0.95
55 2 0.02
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (53 bp):
GTAGAATTACCGAAATACCCCTGTAGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:75139180 original size:81 final size:81
Alignment explanation
Indices: 75139041--75139194 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 81
75139031 GGATAAGTTG
* * * *
75139041 TAGAATTATCGAAATACCTTTGTAAGGTAGCATTACCGAAATACCCCTGTAGGCTAGAATTACCG
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCG
75139106 AAATACCCCTCTAGGA
66 AAATACCCCTCTAGGA
* * *
75139122 TAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCG
*
75139187 AGATACCC
66 AAATACCC
75139195 TTGTGGGGTA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (81 bp):
TAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCG
AAATACCCCTCTAGGA
Found at i:75139210 original size:81 final size:81
Alignment explanation
Indices: 75139044--75139213 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
75139034 TAAGTTGTAG
* * * *
75139044 AATTATCGAAATACCTTTGTAAGGTAGCATTACCGAAATACCCCTGTAGGCTAGAATTACCGAAA
1 AATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCGAAA
*
75139109 TACCCCTCTAGGATAG
66 TACCCCTCTAGGATAA
* * * *
75139125 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCGAAA
* * * *
75139190 TACCCTTGTGGGGTAA
66 TACCCCTCTAGGATAA
75139206 AATTACCG
1 AATTACCG
75139214 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (81 bp):
AATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAATACCCCTGTAGGCTAGAATTACCGAAA
TACCCCTCTAGGATAA
Found at i:75141838 original size:35 final size:35
Alignment explanation
Indices: 75141787--75141859 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
75141777 TGAGTTTCTG
75141787 AGATTGAGCCAATATGTTTCTAGGATTGTCGCTAC
1 AGATTGAGCCAATATGTTTCTAGGATTGTCGCTAC
*
75141822 AGATTGAGCCAGTATGTTTCTAGGATTGTCGCTAC
1 AGATTGAGCCAATATGTTTCTAGGATTGTCGCTAC
75141857 AGA
1 AGA
75141860 GTATGAGCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (35 bp):
AGATTGAGCCAATATGTTTCTAGGATTGTCGCTAC
Found at i:75146811 original size:27 final size:27
Alignment explanation
Indices: 75146656--75146828 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
75146646 TGGATAAGTT
* *
75146656 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
75146683 GTAGAATTACCAAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGG
*
75146710 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
75146737 ATAGATTTACCGAAATACCCTTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
75146764 GTAGAAATACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
75146791 GTAGAATTACCGAGATACCCTTATGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
75146818 GTAAAATTACC
1 GTAGAATTACC
75146829 ACTTTGCCCC
Statistics
Matches: 125, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 125 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:75146811 original size:54 final size:54
Alignment explanation
Indices: 75146656--75146812 Score: 224
Period size: 54 Copynumber: 2.9 Consensus size: 54
75146646 TGGATAAGTT
* * * *
75146656 GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGA
* * *
75146710 GTAGAATTATCGAAATACCCCTGTAGGATAGATTTACCGAAATACCCTTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGA
* * *
75146764 GTAGAAATACCGAAATACCCTTGTAGGGTAGAATTACCGAGATACCCTT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTT
75146813 ATGGGGTAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (54 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGA
Found at i:75151808 original size:27 final size:27
Alignment explanation
Indices: 75151786--75151942 Score: 208
Period size: 27 Copynumber: 5.8 Consensus size: 27
75151776 CGATTTGTAG
*
75151786 AATTACCATTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
* *
75151813 AATTACCGTTTTACCCTCGATTTATAA
1 AATTACCATTTTACCCTCGATTTACAA
*
75151840 AATTACCATTTTACCCTCGATTTACAG
1 AATTACCATTTTACCCTCGATTTACAA
* * *
75151867 AATTATCGTTTTACCCTTGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
75151894 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTACAA
** *
75151921 AATTACTGTTTTACCATCGATT
1 AATTACCATTTTACCCTCGATT
75151943 GTGAAATTAC
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 110 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:75151834 original size:54 final size:54
Alignment explanation
Indices: 75151775--75151942 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
75151765 TGAAATGCCT
* *
75151775 TCGATTTGTAGAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCC
1 TCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCC
* * *
75151829 TCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCC
1 TCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCC
* * * * *
75151883 TTGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACTGTTTTACCA
1 TCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCC
75151937 TCGATT
1 TCGATT
75151943 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
TCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTACCGTTTTACCC
Found at i:75152104 original size:27 final size:26
Alignment explanation
Indices: 75151941--75152124 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 26
75151931 TTACCATCGA
* *
75151941 TTGTGAAATTACTAAAATACCCCTAT
1 TTGTAAAATTACCAAAATACCCCTAT
** *
75151967 AAGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTA-T
75151995 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTA-T
* *
75152022 TTGTAAAATTACCGAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTA-T
* * * *
75152049 TTGTGAAATTATCGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCC-CTAT
75152076 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCT-AT
**
75152103 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
75152125 TTGACTTTCT
Statistics
Matches: 133, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.03
27 125 0.94
28 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCTAT
Found at i:75152125 original size:54 final size:55
Alignment explanation
Indices: 75151974--75152181 Score: 178
Period size: 54 Copynumber: 3.8 Consensus size: 55
75151964 TATAAGATAG
** *
75151974 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAGAAATACCCTC-AATTTGTAA
* * *** *
75152028 AATTACCGAAATACCACTAGTTTGTGAAATTATC-GAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAGAAATACCCTCAATTTGTAA
* * *
75152082 AATTACCAAAATACCCCT-GATTTACAAAATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCCCTAG-TTTACAAAATTACCAGAAATACCC-TCAATTTGT-AA
* * * *
75152138 AATTA-TAGAAATACCCTTGGTTTACAAAATTA-CTGAAATACCCT
1 AATTACCA-AAATACCCCTAGTTTACAAAATTACCAGAAATACCCT
75152182 TGGTTTGTAG
Statistics
Matches: 130, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.02
54 80 0.62
55 9 0.07
56 38 0.29
57 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (55 bp):
AATTACCAAAATACCCCTAGTTTACAAAATTACCAGAAATACCCTCAATTTGTAA
Done.