Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 223 of 362
Found at i:75152197 original size:27 final size:27
Alignment explanation
Indices: 75152080--75152187 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 27
75152070 CTCAATTTGT
** * *
75152080 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
75152107 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACTGAAATACCCTTG-GTTTAC
75152134 TAAAAATTA-TAGAAATACCCTTGGTTTAC
1 --AAAATTACT-GAAATACCCTTGGTTTAC
75152163 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
75152188 GTAGATTTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
27 42 0.61
28 7 0.10
29 20 0.29
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:75153152 original size:25 final size:24
Alignment explanation
Indices: 75153114--75153183 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
75153104 AGGAAGTGTT
*
75153114 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
75153138 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
* *
75153163 AGAAAGAGCTTTGTCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
75153184 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:75153390 original size:42 final size:42
Alignment explanation
Indices: 75153331--75153424 Score: 179
Period size: 42 Copynumber: 2.2 Consensus size: 42
75153321 TAGTCTCCCC
*
75153331 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
75153373 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
75153415 AAATGGGCTT
1 AAATGGGCTT
75153425 AAGGGCCATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:75153481 original size:31 final size:31
Alignment explanation
Indices: 75153446--75153560 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
75153436 CGTTTACAGT
75153446 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
75153477 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
75153508 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
75153539 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
75153561 TCATGACTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:75173145 original size:17 final size:17
Alignment explanation
Indices: 75173123--75173156 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
75173113 GGGTAGGAGT
75173123 TCAATTAGAATTCTTAG
1 TCAATTAGAATTCTTAG
75173140 TCAATTAGAATTCTTAG
1 TCAATTAGAATTCTTAG
75173157 ACCAAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
TCAATTAGAATTCTTAG
Found at i:75173471 original size:29 final size:30
Alignment explanation
Indices: 75173413--75173471 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75173403 TGCCTTTGAA
* *
75173413 AATATTTACAAAAAGAGACAACTAATTTTT
1 AATATTTACAAAAAGAGACAACCAAATTTT
75173443 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGACAACCAAATTTT
75173472 GAAAATAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAAATTTT
Found at i:75176079 original size:8 final size:8
Alignment explanation
Indices: 75176037--75176061 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
75176027 ATATATACTA
75176037 AATAAAAT
1 AATAAAAT
75176045 AATAAAAT
1 AATAAAAT
75176053 AATAAAAT
1 AATAAAAT
75176061 A
1 A
75176062 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:75176085 original size:29 final size:31
Alignment explanation
Indices: 75176034--75176102 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
75176024 TATATATATA
*
75176034 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
75176063 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
75176094 CTAATTAAA
1 CTAATTAAA
75176103 TAACTATGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:75190676 original size:334 final size:333
Alignment explanation
Indices: 75190056--75190952 Score: 1095
Period size: 334 Copynumber: 2.7 Consensus size: 333
75190046 AATTCAATCA
* * * * * * * *
75190056 TTGTCCCCATTATTGATTCTGGTTTTGTTCACGAAAGTGAAAGAAGTTATGGATGATTCGATGTA
1 TTGTCCCCACTATTGATTCTGGTTCTATTGAGGAAAGTGAAAAAAATTATGGGTGATTCGATGTA
* * *
75190121 GTTAATTCAAATATTTCTTTCTCTATATGTCATACTTTGTCTGAAATAACGATTATTTCCTTCAG
66 GTTAATTCAAATATTTCTTTCTCTATATGTTATAC-TTGTCTGAAATAATGATTATAT-CTTCAG
* * *
75190186 ATCTAATAACATGCCATTCTTTCGATATAGATACGATCGCAACCTTCACCTTAATTTTAATTCAA
129 ATCTAAGAACATGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTTTAATTCAA
* *
75190251 TTGGGGACAAATTCTCTCCCTCTTCTCTAAAGGATGACTTAAAACAAGTAAGATAATCGATGTAT
194 TTGGGGACAAATTCTCTCCCTCTTCTCTAAAGAATGACTTAAAACAAGGAAGATAATCGATGTAT
* * * * *
75190316 GATGTATTTGTATAAAATTATGATTATATCGCTCATATCT-AAAAAA-GTTTCATGTGTTGGATA
259 GATGTATTTGTACAAAATTATGATTATATCACTCAGATATGAAAAAATG-TT-ATGTGTCGGATA
75190379 GTGGGACAACTG
322 GTGGGACAACTG
** * * *
75190391 TTGTCTGCACTATTGATTCTGGTTCTATTGAGGAAAATGAAAAAAATTATGGGCGATTTGATGTA
1 TTGTCCCCACTATTGATTCTGGTTCTATTGAGGAAAGTGAAAAAAATTATGGGTGATTCGATGTA
* * *
75190456 GTTAATTCAAAT-TTGTCTTTCTCTATATGTTATACTTGTCTAAAATAATGGTTATGTCTGTCAG
66 GTTAATTCAAATATT-TCTTTCTCTATATGTTATACTTGTCTGAAATAATGATTATATCT-TCAG
* * * *
75190520 ATCTAAGAACATGCCATTCATTAGATATAGATACGATCATAACCTTTACATTAATTTTAATTCAA
129 ATCTAAGAACATGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTTTAATTCAA
* * *
75190585 TTGGGGACAAATTCTCTCCCTCTTCTCTAATGAATGATTTAAAACTAGGAAGATAATCGATGTAT
194 TTGGGGACAAATTCTCTCCCTCTTCTCTAAAGAATGACTTAAAACAAGGAAGATAATCGATGTAT
* * * *
75190650 GATGTATTTGTACAAAATTATGATTATATTACTTAGATATGAGAACATGTTATGTGTCGGATAGT
259 GATGTATTTGTACAAAATTATGATTATATCACTCAGATATGAAAAAATGTTATGTGTCGGATAGT
** *
75190715 GGGATGATTG
324 GGGACAACTG
* *
75190725 TTGTCCCCATTATTGATTCTAGTTCTATTGAGGAAAGTGGAAAAAAAGTTATGGGTGATTCGATG
1 TTGTCCCCACTATTGATTCTGGTTCTATTGAGGAAAGT-GAAAAAAA-TTATGGGTGATTCGATG
* * ** **
75190790 GAGTTAATTCAAATCTTTCTTTCTCTCCAT-TTCATACTACATCTGAAATAATGATTATATCTTT
64 TAGTTAATTCAAATATTTCTTTCTCTATATGTT-ATACT-TGTCTGAAATAATGATTATATC-TT
* * * * * *
75190854 CAGATCTAAGAACGTGTCATTCGTTCGATATAGGA-ACGATGGTAGCATTCACCTTAATTTTAAT
126 CAGATCTAAGAACATGCCATTCATTCGATATA-GATACGATCGTAACCTTCACCTTAATTTTAAT
* * * *
75190918 TCAATT-GGGAAAAATTCGCTCCTTCATCTCTAAAG
190 TCAATTGGGGACAAATTCTCTCCCTCTTCTCTAAAG
75190953 GGAAAAAAGT
Statistics
Matches: 479, Mismatches: 72, Indels: 21
0.84 0.13 0.04
Matches are distributed among these distances:
333 2 0.00
334 229 0.48
335 99 0.21
336 69 0.14
337 77 0.16
338 3 0.01
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (333 bp):
TTGTCCCCACTATTGATTCTGGTTCTATTGAGGAAAGTGAAAAAAATTATGGGTGATTCGATGTA
GTTAATTCAAATATTTCTTTCTCTATATGTTATACTTGTCTGAAATAATGATTATATCTTCAGAT
CTAAGAACATGCCATTCATTCGATATAGATACGATCGTAACCTTCACCTTAATTTTAATTCAATT
GGGGACAAATTCTCTCCCTCTTCTCTAAAGAATGACTTAAAACAAGGAAGATAATCGATGTATGA
TGTATTTGTACAAAATTATGATTATATCACTCAGATATGAAAAAATGTTATGTGTCGGATAGTGG
GACAACTG
Found at i:75192342 original size:21 final size:20
Alignment explanation
Indices: 75192293--75192342 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
75192283 TTCAATTATT
75192293 TAATTATAATAAATTAATTAA
1 TAATTA-AATAAATTAATTAA
75192314 TAATTTAAATAAATTAAATTAA
1 TAA-TTAAATAAATT-AATTAA
*
75192336 TCATTAA
1 TAATTAA
75192343 GTTATCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTAAATAAATTAATTAA
Found at i:75196608 original size:14 final size:14
Alignment explanation
Indices: 75196589--75196615 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75196579 ATTGTTTAGA
75196589 AAGAAAAGCTCCCG
1 AAGAAAAGCTCCCG
75196603 AAGAAAAGCTCCC
1 AAGAAAAGCTCCC
75196616 AAAAGATGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.19, T:0.07
Consensus pattern (14 bp):
AAGAAAAGCTCCCG
Found at i:75196840 original size:99 final size:98
Alignment explanation
Indices: 75196611--75196865 Score: 271
Period size: 99 Copynumber: 2.6 Consensus size: 98
75196601 CGAAGAAAAG
* * * * * * ** * * *
75196611 CTCCCAAAAGATGGAGTTTATACGACTCAATCGGTTTACTCCCAGTGCAGGATTAACTTAGTTGA
1 CTCCCAAAAGATAGAGTATATACAACTAAACCGATTTACTCGAAATGTAGGGTTAACTTAGTTGA
*
75196676 AACAATCAATTTAATAGTCATATTGGAAGTAGC
66 AACAATCAATTTAATAGTCATACTGGAAGTAGC
* * *
75196709 CTCCCAAAAGATGGAGTATCTACAACTCAACCGATTTACTCGAAATGTAGGGTTAACTTAGTT-A
1 CTCCCAAAAGATAGAGTATATACAACTAAACCGATTTACTCGAAATGTAGGGTTAACTTAGTTGA
*
75196773 AAGCCAAT-AATCTTAATGGTCATACTGGAAGTAGC
66 AA--CAATCAAT-TTAATAGTCATACTGGAAGTAGC
* * * * * *
75196808 CTCCCAGAAGATAGAGTTTATACAGCTAAACCGGTTTACTTGGAATGTAGGGTTAACT
1 CTCCCAAAAGATAGAGTATATACAACTAAACCGATTTACTCGAAATGTAGGGTTAACT
75196866 CACTTCAAGA
Statistics
Matches: 133, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
97 3 0.02
98 56 0.42
99 74 0.56
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (98 bp):
CTCCCAAAAGATAGAGTATATACAACTAAACCGATTTACTCGAAATGTAGGGTTAACTTAGTTGA
AACAATCAATTTAATAGTCATACTGGAAGTAGC
Found at i:75202140 original size:8 final size:8
Alignment explanation
Indices: 75202127--75202152 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
75202117 TTCACACAAG
75202127 TATTTAAT
1 TATTTAAT
75202135 TATTTAAT
1 TATTTAAT
75202143 TATTTAAT
1 TATTTAAT
75202151 TA
1 TA
75202153 ACAAATATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTTAAT
Found at i:75202311 original size:16 final size:18
Alignment explanation
Indices: 75202290--75202327 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
75202280 AAATCTCATA
75202290 AATAAAT-TATTTAA-TT
1 AATAAATATATTTAACTT
*
75202306 AATAAATATCTTTAACTT
1 AATAAATATATTTAACTT
75202324 AATA
1 AATA
75202328 TAAATAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 6 0.32
18 6 0.32
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AATAAATATATTTAACTT
Found at i:75202350 original size:24 final size:23
Alignment explanation
Indices: 75202323--75202386 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 23
75202313 ATCTTTAACT
75202323 TAATATAAATAATAATAATAATAA
1 TAAT-TAAATAATAATAATAATAA
** *
75202347 TAATTTAATATAA-AACCATACTAA
1 TAA-TTAA-ATAATAATAATAATAA
75202371 TAATT-AATAATAATAA
1 TAATTAAATAATAATAA
75202387 AATCTTAGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
21 4 0.12
22 4 0.12
23 2 0.06
24 17 0.53
25 5 0.16
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (23 bp):
TAATTAAATAATAATAATAATAA
Found at i:75223569 original size:47 final size:47
Alignment explanation
Indices: 75223511--75223641 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
75223501 CAAAATCGAT
* * * *
75223511 AAGTACGTATACCATGGCTCGTAGCCAAATCAAGGTAACTTATC-CTG
1 AAGTACCTATACCATGGCCCGTATCCAAATCAAGGTAAC-TACCTCTG
* *
75223558 GAGTACCTATACCATGGCCCGTATCCAAATCAAGGTAACTCCCTCTG
1 AAGTACCTATACCATGGCCCGTATCCAAATCAAGGTAACTACCTCTG
* *
75223605 AAATACCTATACCATGCCCCGTATCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTATCCAAATCAAGGTA
75223642 TTACTCACAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 2 0.03
47 72 0.97
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTATCCAAATCAAGGTAACTACCTCTG
Found at i:75230578 original size:26 final size:26
Alignment explanation
Indices: 75230548--75230603 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
75230538 AACCCCAAAA
*
75230548 TAGGTAAAATGATCGTAATGCCCCTG
1 TAGGTAAAATGACCGTAATGCCCCTG
*
75230574 TAGGTAAAATGGCCGTAATGCCCCTG
1 TAGGTAAAATGACCGTAATGCCCCTG
75230600 TAGG
1 TAGG
75230604 GCGAAATGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGGTAAAATGACCGTAATGCCCCTG
Found at i:75231894 original size:21 final size:21
Alignment explanation
Indices: 75231864--75231907 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
75231854 TTCAGTTTAA
*
75231864 CCTAGCCTAGCTCCTCTT-ATG
1 CCTAGACTAGCTCCT-TTGATG
75231885 CCTAGACTAGCTCCTTTGATG
1 CCTAGACTAGCTCCTTTGATG
75231906 CC
1 CC
75231908 CCTTGACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (21 bp):
CCTAGACTAGCTCCTTTGATG
Found at i:75232529 original size:20 final size:20
Alignment explanation
Indices: 75232504--75232543 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
75232494 GCTCGTATAG
75232504 TGGGTGATTCAATGTAGTTA
1 TGGGTGATTCAATGTAGTTA
75232524 TGGGTGATTCAATGTAGTTA
1 TGGGTGATTCAATGTAGTTA
75232544 AATCAAATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.30, T:0.40
Consensus pattern (20 bp):
TGGGTGATTCAATGTAGTTA
Found at i:75236859 original size:37 final size:37
Alignment explanation
Indices: 75236752--75236860 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
75236742 AGCTCAGACG
* * *
75236752 AAATCTCCACACGAAGTTATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
75236789 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
75236826 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
75236861 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:75237062 original size:50 final size:50
Alignment explanation
Indices: 75237008--75237142 Score: 218
Period size: 50 Copynumber: 2.7 Consensus size: 50
75236998 CATCGCCTAC
*
75237008 ATATTTCACACT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATATACATATCTCATATAT
* *
75237058 ATATTTCACATTGACCATTCGACTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATAT
*
75237108 ATATTTCACATTGACCATTCAGCTTTACCACATAT
1 ATATTTCACATTGACCATTCGGCTTTACCACATAT
75237143 GCATGTTCAT
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 78 0.99
51 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:75237204 original size:47 final size:47
Alignment explanation
Indices: 75237113--75237304 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
75237103 TATATATATT
* * * * *
75237113 TCACATTGACCATTCAGCTTTA-C-CACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
75237158 CCACATTGGCCATTCGGCATTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
75237205 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
75237252 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
75237299 TCACAT
1 TCACAT
75237305 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 18 0.13
46 1 0.01
47 116 0.86
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:75237231 original size:22 final size:22
Alignment explanation
Indices: 75237204--75237279 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
75237194 GCTCACATTC
75237204 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
75237226 ATCACATATATG-CATGCTC-ACATT
1 ATCACAT-T-GGCCAT--TCGGCCTT
75237250 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
75237273 ATCACAT
1 ATCACAT
75237280 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:75240870 original size:29 final size:29
Alignment explanation
Indices: 75240805--75240859 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
75240795 AACAGGGGTT
75240805 TTCACATGGCCAAGCACACGCCCGTGTCC
1 TTCACATGGCCAAGCACACGCCCGTGTCC
*
75240834 TTCACATGGCCTAG-ACACGCCCGTGT
1 TTCACATGGCCAAGCACACGCCCGTGT
75240860 GGTCTCCCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (29 bp):
TTCACATGGCCAAGCACACGCCCGTGTCC
Found at i:75248308 original size:21 final size:21
Alignment explanation
Indices: 75248279--75248324 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
75248269 CAAAGCACAT
*
75248279 GCTCGTGTGCTTTGGGAACAC
1 GCTCATGTGCTTTGGGAACAC
75248300 GCTCATGTGCTTTGGGAACAC
1 GCTCATGTGCTTTGGGAACAC
75248321 GCTC
1 GCTC
75248325 GTGTTCCCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.28
Consensus pattern (21 bp):
GCTCATGTGCTTTGGGAACAC
Found at i:75249210 original size:6 final size:6
Alignment explanation
Indices: 75249180--75249384 Score: 145
Period size: 6 Copynumber: 33.3 Consensus size: 6
75249170 AAGAAACATT
*
75249180 ATCAGA A-CTAGA ATCA-A TATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA -ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
75249227 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGT ACCAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA ATCAGA
* * *
75249278 ATCA-A TATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* *
75249329 A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
75249377 ATTAGA AT
1 ATCAGA AT
75249385 GTGAATGCAA
Statistics
Matches: 157, Mismatches: 23, Indels: 38
0.72 0.11 0.17
Matches are distributed among these distances:
5 10 0.06
6 126 0.80
7 14 0.09
8 6 0.04
9 1 0.01
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:75249244 original size:31 final size:31
Alignment explanation
Indices: 75249201--75249356 Score: 129
Period size: 31 Copynumber: 4.8 Consensus size: 31
75249191 AATCAATATG
* *
75249201 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
*
75249232 AGAATCAAAATCAGAATCAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
* * *
75249262 AGGTACCAGAATCAGAATCA-ATATCAGGTAAC
1 A-GAATCAAAATCAGAATCAGA-ATCAGGTAAC
*
75249294 AGAATCAAAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAAAAT------CAGAATCAGAATCAGGTAAC
* *
75249331 AGAATCAGAATCAGAACCAGAATCAG
1 AGAATCAAAATCAGAATCAGAATCAG
75249357 AATTAGGTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
29 1 0.01
30 3 0.03
31 63 0.64
32 2 0.02
33 2 0.02
37 27 0.27
38 1 0.01
ACGTcount: A:0.49, C:0.17, G:0.18, T:0.17
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:75249271 original size:25 final size:25
Alignment explanation
Indices: 75249243--75249384 Score: 125
Period size: 25 Copynumber: 5.7 Consensus size: 25
75249233 GAATCAAAAT
* *
75249243 CAGAATCAGAATCAGAATTAGGTAC
1 CAGAATCAGAATCAGAATCAGGTAA
75249268 CAGAATCAGAATCA-ATATCAGGTAA
1 CAGAATCAGAATCAGA-ATCAGGTAA
* *
75249293 CAGAATCAAAATCAGAACCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
*
75249316 TCAGAATTAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
75249341 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
75249367 CAGAATCAGAATTAGAAT
1 CAGAATCAGAATCAGAAT
75249385 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 16
0.78 0.10 0.13
Matches are distributed among these distances:
23 4 0.04
24 17 0.18
25 71 0.73
26 5 0.05
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:75249288 original size:62 final size:62
Alignment explanation
Indices: 75249206--75249346 Score: 239
Period size: 62 Copynumber: 2.3 Consensus size: 62
75249196 ATATGAGAAT
* * *
75249206 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAGAATCAGAATCAGAATTAGGTAC
1 CAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
75249268 CAGAATCAGAATCA-ATATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGA-ATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
75249330 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
75249347 CCAGAATCAG
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
61 1 0.01
62 72 0.97
63 1 0.01
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (62 bp):
CAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:75249309 original size:37 final size:37
Alignment explanation
Indices: 75249268--75249383 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
75249258 AATTAGGTAC
* ** * *
75249268 CAGAATCAGAATCAATATCAGGTAACAGAATCAAAAT
1 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
75249305 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
75249342 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
*
75249379 TAGAA
1 CAGAA
75249384 TGTGAATGCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATTAGGTAACAGAATCAGAAT
Found at i:75249384 original size:31 final size:31
Alignment explanation
Indices: 75249201--75249384 Score: 133
Period size: 37 Copynumber: 5.5 Consensus size: 31
75249191 AATCAATATG
*
75249201 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGGT-----AA-C
* *
75249238 AAAATCAGAATCAGAATCAGAATTAGGTACC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
75249269 AGAATCAGAATCA-ATATCAGGTAA-CA-G-AATC
1 AGAATCAGAATCAGA-ATCA-G-AATTAGGTAA-C
* *
75249300 AAAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
75249331 AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAAT------CAGAATCAGAATTAGGTAAC
*
75249368 AGAATCAGAATTAGAAT
1 AGAATCAGAATCAGAAT
75249385 GTGAATGCAA
Statistics
Matches: 121, Mismatches: 12, Indels: 34
0.72 0.07 0.20
Matches are distributed among these distances:
29 2 0.02
30 4 0.03
31 50 0.41
32 6 0.05
33 2 0.02
37 57 0.47
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAAC
Found at i:75249951 original size:54 final size:54
Alignment explanation
Indices: 75249893--75250089 Score: 141
Period size: 54 Copynumber: 3.6 Consensus size: 54
75249883 TTAACACCCT
*
75249893 AGGGGTAAAAT-GGTAATTT-TACCTCAGAAGGGTATCTCAGTAATTCTACCCTAC
1 AGGGGT-AAATCGGT-ATTTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTAC
** * * * *
75249947 AGGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTAT
1 AGGGGTAAATCGGTATTTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTAC
* ** *** * * * * * *
75250001 AAGGGTATTTTAATAATTCTACC-CTACAGGGGTATTTCGGTATTTCTACCCTAA
1 AGGGGTAAATCGGTATTTCTACCTC-ACAAGGGTATCTCAGTAATTCTACCCTAC
**
75250055 AGGGGTATTTCGGTATTTCTACC-CTACAAGGGTAT
1 AGGGGTAAATCGGTATTTCTACCTC-ACAAGGGTAT
75250090 TTCGGCATTT
Statistics
Matches: 118, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
53 6 0.05
54 112 0.95
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (54 bp):
AGGGGTAAATCGGTATTTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTAC
Found at i:75249952 original size:27 final size:27
Alignment explanation
Indices: 75249920--75250120 Score: 260
Period size: 27 Copynumber: 7.4 Consensus size: 27
75249910 TTTACCTCAG
* * *
75249920 AAGGGTATCTCAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* *
75249947 AGGGGTATTTCGGTATTTCTACCTTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
* *
75249974 AAGGGTATTTCGGTAATTCTACCCTAT
1 AAGGGTATTTCGGTATTTCTACCCTAC
*** *
75250001 AAGGGTATTTTAATAATTCTACCCTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
*
75250028 AGGGGTATTTCGGTATTTCTACCCTA-
1 AAGGGTATTTCGGTATTTCTACCCTAC
75250054 AAGGGGTATTTCGGTATTTCTACCCTAC
1 AA-GGGTATTTCGGTATTTCTACCCTAC
* *
75250082 AAGGGTATTTCGGCATTTCTACCTTAC
1 AAGGGTATTTCGGTATTTCTACCCTAC
75250109 AAGGGTATTTCG
1 AAGGGTATTTCG
75250121 ATAATTTTGT
Statistics
Matches: 151, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 148 0.98
28 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTCGGTATTTCTACCCTAC
Found at i:75250140 original size:27 final size:27
Alignment explanation
Indices: 75250108--75250262 Score: 89
Period size: 27 Copynumber: 5.7 Consensus size: 27
75250098 TTCTACCTTA
*
75250108 CAAGGGTATTTCGATAATTTTGTAAAT
1 CAAGGGTATTTCGATAATTTTATAAAT
* *** * * *
75250135 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTCGATAATTTTATAAAT
* * *
75250162 CAAGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGATAATTTTATAAAT
** * **
75250189 TGAGGGTATTTCAATAATTTTATAGGT
1 CAAGGGTATTTCGATAATTTTATAAAT
* *
75250216 CAAGGGTATTTC-AGTAATTTTACAAAC
1 CAAGGGTATTTCGA-TAATTTTATAAAT
* * *
75250243 CAGGGGTATTTTGGTAATTT
1 CAAGGGTATTTCGATAATTT
75250263 GGTAAACTAA
Statistics
Matches: 95, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
26 4 0.04
27 91 0.96
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTCGATAATTTTATAAAT
Found at i:75267412 original size:47 final size:47
Alignment explanation
Indices: 75267360--75267861 Score: 801
Period size: 47 Copynumber: 10.6 Consensus size: 47
75267350 GATAATTGTG
* *
75267360 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75267407 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75267454 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75267503 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75267550 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75267597 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75267646 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75267695 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75267742 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
75267789 ATGTGAAAGTGTATATATGTGACAGGGCC-AAGTGG-CGAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAA-TGGCCG-ATGTGATGA
*
75267836 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75267862 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 21, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
46 4 0.01
47 285 0.67
49 139 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75267467 original size:96 final size:96
Alignment explanation
Indices: 75267360--75267861 Score: 808
Period size: 96 Copynumber: 5.3 Consensus size: 96
75267350 GATAATTGTG
75267360 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75267423 ATGTGATAAGGCCGAATGGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
75267454 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75267519 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75267550 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
75267613 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
75267646 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75267711 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75267742 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
75267805 ATGTGACAGGGCC-AAGTGG-CGAACGTGATGG
66 ATGTGATAAGGCCTAA-TGGCCG-ATGTGATGA
75267836 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75267862 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 14, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
93 4 0.01
94 141 0.37
95 3 0.01
96 191 0.50
98 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75267507 original size:143 final size:143
Alignment explanation
Indices: 75267360--75267861 Score: 832
Period size: 143 Copynumber: 3.5 Consensus size: 143
75267350 GATAATTGTG
*
75267360 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75267425 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
75267490 GCCGATGTGATGA
131 GCCGATGTGATGA
*
75267503 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75267568 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
75267633 GCCGATGTGATGA
131 GCCGATGTGATGA
75267646 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
75267711 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATGAGGCCTAA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
75267774 TGGCCGATGTGATGA
129 TGGCCGATGTGATGA
* * * * * *
75267789 ATGTGAAAGTGTATATATGTGACAGGGCC-AAGTGG-CGAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAA-TGGCCG-ATGTGATGAATGTGAAAGTGTATAT
75267852 ATGTGATAAG
64 ATGTGATAAG
75267862 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 13, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
140 4 0.01
141 53 0.15
143 192 0.56
145 93 0.27
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
GCCGATGTGATGA
Found at i:75272121 original size:48 final size:48
Alignment explanation
Indices: 75272057--75272627 Score: 869
Period size: 48 Copynumber: 11.9 Consensus size: 48
75272047 AATAGATAGA
*
75272057 TATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272105 TATATAG-GGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATA
1 TATAT-GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272153 TATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTAT--GATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272199 TATATGTGGTAAAGCCGAATGGCTAGTATGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
75272247 TATAAGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** *
75272295 TATATGTGGTAAAGCCGAATGGCTAAAATGAAATATGTATGAGATATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272343 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272391 TATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
75272439 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
** * *
75272487 TATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAGAGATA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
75272535 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
75272583 TATATTTGGTAAAGCCGGATGGCTAATGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
75272628 GTGTGTATAT
Statistics
Matches: 479, Mismatches: 40, Indels: 8
0.91 0.08 0.02
Matches are distributed among these distances:
46 45 0.09
47 1 0.00
48 432 0.90
49 1 0.00
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:75272818 original size:37 final size:37
Alignment explanation
Indices: 75272768--75272870 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
75272758 GGAAATATAT
75272768 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75272805 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75272842 TCCGGGTAAGACTCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75272871 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75274211 original size:40 final size:40
Alignment explanation
Indices: 75274166--75274433 Score: 396
Period size: 40 Copynumber: 6.7 Consensus size: 40
75274156 TATATAGCAC
75274166 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
*
75274206 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTTCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
* *
75274246 GGCTAAGTCCCGAAGAGCATTCGTACTGGTGTTATGTCCA
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
*
75274286 GGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
* * *
75274326 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
* * * *
75274366 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCA
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
* *
75274406 GGCTAA-ACCTCGAAG-GTATTCGTGCTGG
1 GGCTAAGTCC-CGAAGAGCATTCGTGCTGG
75274434 AATTATGAGG
Statistics
Matches: 212, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.06
40 199 0.94
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCCG
Found at i:75274509 original size:29 final size:28
Alignment explanation
Indices: 75274439--75274741 Score: 200
Period size: 29 Copynumber: 10.6 Consensus size: 28
75274429 GCTGGAATTA
* * *
75274439 TGAGGCACTGTGTGTGCAAGTTCTTCAAT
1 TGAGGCACTATGTGTGCAAGATCGT-AAT
* * *
75274468 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGATC-GTAAT
* * *
75274496 TGAGGCACTGTGTGTGCAAGTTCTTCAAT
1 TGAGGCACTATGTGTGCAAGATCGT-AAT
* * *
75274525 CGA-GCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGA-TCGTAAT
* * *
75274553 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCAAGATC-GTAAT
* * * *
75274582 TGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCAAGATCGT-AAT
* * *
75274611 CGA-GCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGATC-GTAAT
* * *
75274639 TGAGGCACTGTGTGTGCAAGTTCTTCAAT
1 TGAGGCACTATGTGTGCAAGATCGT-AAT
* * *
75274668 CGA-GCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCAAGA-TCGTAAT
* * * *
75274696 TGAGGCATTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCAAGATC-GTAAT
75274725 TGAGGCACTATGTGTGC
1 TGAGGCACTATGTGTGC
75274742 GAGTTCTATA
Statistics
Matches: 211, Mismatches: 50, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
28 83 0.39
29 128 0.61
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
TGAGGCACTATGTGTGCAAGATCGTAAT
Found at i:75274587 original size:86 final size:86
Alignment explanation
Indices: 75274471--75274753 Score: 311
Period size: 86 Copynumber: 3.3 Consensus size: 86
75274461 CTTCAATCGA
* * ** *
75274471 GCACTATGTGTGCCAGATCAGTAGTTGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATG
1 GCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATG
*
75274536 TGTGCGAGATTGGTAATTGAG
66 TGTGCGAGATTAGTAATTGAG
*
75274557 GCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATG
1 GCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATG
* * *
75274622 TGTGCCAGATCAGTAGTTGAG
66 TGTGCGAGATTAGTAATTGAG
* * * * * * ** * *
75274643 GCACTGTGTGTGCAAGTTCTTCAATCGA-GCACTATGTGTGCGAGATTGGT-AATTGAGGCATTA
1 GCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAG-TTCTTCAATCGA-GCACTA
**
75274706 TGTGTGCGAG-TTCTTTAATTGAG
64 TGTGTGCGAGATT-AGTAATTGAG
*
75274729 GCACTATGTGTGCGAGTTCTATAAT
1 GCACTATGTGTGCGAGTTCTTTAAT
75274754 CGAGCGCTAT
Statistics
Matches: 164, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
85 19 0.12
86 145 0.88
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.33
Consensus pattern (86 bp):
GCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATG
TGTGCGAGATTAGTAATTGAG
Found at i:75274697 original size:143 final size:143
Alignment explanation
Indices: 75274439--75274778 Score: 601
Period size: 143 Copynumber: 2.4 Consensus size: 143
75274429 GCTGGAATTA
75274439 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCAC
1 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCAC
75274504 TGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACTATGTGTG
66 TGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACTATGTGTG
75274569 CGAGTTCTTTAAT
131 CGAGTTCTTTAAT
*
75274582 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCAC
1 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCAC
*
75274647 TGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCATTATGTGTG
66 TGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACTATGTGTG
75274712 CGAGTTCTTTAAT
131 CGAGTTCTTTAAT
* * * * *
75274725 TGAGGCACTATGTGTGCGAGTTCTAT-AATCGAGCGCTATGTGTGCGAAATCAGT
1 TGAGGCACTGTGTGTGCAAGTTCT-TCAATCGAGCACTATGTGTGCCAGATCAGT
75274779 CAATGGGCAC
Statistics
Matches: 188, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 187 0.99
144 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (143 bp):
TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTTGAGGCAC
TGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACTATGTGTG
CGAGTTCTTTAAT
Found at i:75274765 original size:57 final size:56
Alignment explanation
Indices: 75274439--75274771 Score: 276
Period size: 57 Copynumber: 5.8 Consensus size: 56
75274429 GCTGGAATTA
* * * * ** *
75274439 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTT-AATCGAGCACTATGTGTGCGAGTTCTTTAAT
* * **
75274496 TGAGGCACTGTGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATT-GGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTT-AATCGAGCACTATGTGTGCGAG-TTCTTTAAT
* * * * *
75274553 TGAGGCACTATGTGTGCGAGTTCTTTAATTGAGGCACTGTGTGTGCAAGTTCTTCAAC
1 TGAGGCACTATGTGTGCGAGTTC-TTAATCGA-GCACTATGTGTGCGAGTTCTTTAAT
* * * * * * * * *
75274611 CGA-GCACTATGTGTGCCAGATCAGTAGTTGAGGCACTGTGTGTGCAAGTTCTTCAAT
1 TGAGGCACTATGTGTGCGAGTTC-TTAATCGA-GCACTATGTGTGCGAGTTCTTTAAT
* ** * *
75274668 CGA-GCACTATGTGTGCGAGATTGGTAATTGAGGCATTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAG-TTCTTAATCGA-GCACTATGTGTGCGAGTTCTTTAAT
*
75274725 TGAGGCACTATGTGTGCGAGTTCTATAATCGAGCGCTATGTGTGCGA
1 TGAGGCACTATGTGTGCGAGTTCT-TAATCGAGCACTATGTGTGCGA
75274772 AATCAGTCAA
Statistics
Matches: 235, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
57 191 0.81
58 44 0.19
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (56 bp):
TGAGGCACTATGTGTGCGAGTTCTTAATCGAGCACTATGTGTGCGAGTTCTTTAAT
Found at i:75277442 original size:48 final size:48
Alignment explanation
Indices: 75277374--75277999 Score: 957
Period size: 48 Copynumber: 13.0 Consensus size: 48
75277364 ATAAATAGAT
* * *
75277374 ATATATATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75277422 ATATGTATAAAG-GGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTAT-ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75277470 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75277518 ATATATATATGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75277566 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75277614 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* **
75277662 ATATGTTTATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75277710 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75277758 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75277806 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
**
75277854 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75277902 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75277950 ATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75277998 AT
1 AT
75278000 GTGTGTATAT
Statistics
Matches: 530, Mismatches: 46, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 2 0.00
48 526 0.99
49 2 0.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75277709 original size:192 final size:192
Alignment explanation
Indices: 75277374--75277999 Score: 1056
Period size: 192 Copynumber: 3.3 Consensus size: 192
75277364 ATAAATAGAT
* * * *
75277374 ATATATATATGTGGTAAAGCCGAATGACTAATGTGAAATATGTATGAAATATGTATAAAG-GGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTA-AATGTGGTA
* * * * *
75277438 AAGCCGAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAAAGCCGAATGGCTAATA
65 AAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACA
*
75277503 TGAAATATGTATGAGATATATATATGTGGTAAAACCGAATGGCTAATGTGAAATATATATGAG
130 TGAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
* * *
75277566 ATATGTACATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTACATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGTAA
*
75277631 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTTTATGTGGTAAAGCCGAATGGCTAACAT
66 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACAT
75277696 GAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
131 GAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
* *
75277758 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGTAA
75277823 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACAT
66 AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACAT
*
75277888 GAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
131 GAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
* * *
75277950 ATATGTATATTTGGTAAAGCCGGATGGCTAATGTGAAATATGTAGGAGAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
75278000 GTGTGTATAT
Statistics
Matches: 411, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
191 2 0.00
192 409 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (192 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTAAATGTGGTAA
AGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAACAT
GAAATATGTATGAGATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
Found at i:75278192 original size:37 final size:37
Alignment explanation
Indices: 75278140--75278242 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75278130 GGAAATATAT
75278140 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75278177 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75278214 TCCGGGTAAGACTCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75278243 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75280566 original size:27 final size:26
Alignment explanation
Indices: 75280536--75280586 Score: 93
Period size: 27 Copynumber: 1.9 Consensus size: 26
75280526 TGACCCTAGT
75280536 CGGGAAGTGGTTTCAGGACCGCTAAAC
1 CGGGAAGTGGTTTC-GGACCGCTAAAC
75280563 CGGGAAGTGGTTTCGGACCGCTAA
1 CGGGAAGTGGTTTCGGACCGCTAA
75280587 CAAGTCACGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.24, C:0.22, G:0.35, T:0.20
Consensus pattern (26 bp):
CGGGAAGTGGTTTCGGACCGCTAAAC
Found at i:75282154 original size:39 final size:39
Alignment explanation
Indices: 75282019--75282239 Score: 188
Period size: 39 Copynumber: 5.7 Consensus size: 39
75282009 TTGAATGCTG
* *
75282019 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-A
*
75282059 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAA
* * *
75282097 GTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAA
1 --TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
* * **
75282138 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AA
* *
75282177 TCCGGGTTAAGTCCCGAAGGCA-TTGT--GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AA
* *
75282214 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75282240 AACGAGGAGC
Statistics
Matches: 153, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
36 3 0.02
37 24 0.16
38 9 0.06
39 54 0.35
40 50 0.33
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:75289646 original size:39 final size:38
Alignment explanation
Indices: 75289594--75289759 Score: 187
Period size: 39 Copynumber: 4.3 Consensus size: 38
75289584 GGACTAAGAT
75289594 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAA--TCCGGGTTAAGTC
*
75289633 CCGAAGGCCTTTGTGCGAGATACTAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AATCCGGGTTAAGTC
* *
75289672 CCGAAGGCATTCGTGCGAGTTTTA-AATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAG--ATACAATCCGGGTTAAGTC
* * * * *
75289711 CCGAAGGCA-TTGTGTGAGTTA-AAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACAATCCGGGTTAAGTC
75289747 CCGAAGGCATTTG
1 CCGAAGGCATTTG
75289760 AACGAGGAGC
Statistics
Matches: 113, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
36 24 0.21
37 3 0.03
38 18 0.16
39 64 0.57
40 2 0.02
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGATACAATCCGGGTTAAGTC
Found at i:75289679 original size:78 final size:75
Alignment explanation
Indices: 75289541--75289759 Score: 192
Period size: 78 Copynumber: 2.8 Consensus size: 75
75289531 TTGAATGCTG
* * * *
75289541 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-AA-A-A-CCGGGCTAAG-TCCCGAAGGCAT
*
75289604 TTGTGCGAGATACAAGT
60 TTGTGCGAGATACAA-A
* * * *
75289621 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATA--AAACCGGGCTAAGTCCCGAAGGCATTTG
* **
75289685 TGCGAGTTTTAAA
63 TGCGAGATACAAA
* * *
75289698 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAAAACCGGGCTAAGTCCCGAAGGCATTTG
75289760 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 17, Indels: 17
0.77 0.11 0.11
Matches are distributed among these distances:
75 24 0.21
77 23 0.20
78 37 0.32
79 9 0.08
80 21 0.18
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (75 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAAAACCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGATACAAA
Found at i:75297516 original size:47 final size:47
Alignment explanation
Indices: 75297286--75297644 Score: 583
Period size: 47 Copynumber: 7.5 Consensus size: 47
75297276 GTGTGTATAC
75297286 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75297333 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75297382 GTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75297431 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
75297480 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75297527 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
75297574 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
75297621 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
75297645 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
47 155 0.53
49 137 0.47
51 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:75300528 original size:43 final size:43
Alignment explanation
Indices: 75300480--75300618 Score: 167
Period size: 43 Copynumber: 3.3 Consensus size: 43
75300470 TGTAATTACA
75300480 TGTAAGACCATGTCTGGGACATTGGCATTCTAT-TGTGATAACG
1 TGTAAGACCATGTCTGGGACATTGGCA-TCTATATGTGATAACG
* * **
75300523 TGTAAGGCCATGTCTGGGACATTGGCATCGT-TATATGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATC-TATATGTGATAACG
* * * *
75300566 TGTAAGACCTTGTTTGGGACATTGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATCTATATGTGATAACG
75300609 TGTAAG-CCAT
1 TGTAAGACCAT
75300619 ATCTAGGATA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
42 6 0.08
43 74 0.93
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCTATATGTGATAACG
Found at i:75301708 original size:12 final size:12
Alignment explanation
Indices: 75301691--75301726 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
75301681 TGGCCGTGTT
75301691 TGGCACATGGGC
1 TGGCACATGGGC
*
75301703 TGGCACACGGGC
1 TGGCACATGGGC
75301715 TGGCACATGGGC
1 TGGCACATGGGC
75301727 ATGTGGCCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.17, C:0.28, G:0.42, T:0.14
Consensus pattern (12 bp):
TGGCACATGGGC
Found at i:75304469 original size:27 final size:28
Alignment explanation
Indices: 75304439--75304883 Score: 400
Period size: 27 Copynumber: 16.6 Consensus size: 28
75304429 TAATAAAGAG
**
75304439 AAATTATCGAAATACCCCT-GGTTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* * *
75304466 AAATTACCGAAGTACCCC-CGATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304493 AAATTACCGAAATACCCCT-GATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
*
75304520 AAATTAT-TAAATA-CCCTCAATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304546 AAATTA-CTGAAATA-CCCTCGA-TTGTG
1 AAATTATC-GAAATACCCCTCAATTTGTA
**
75304572 AAATTATTAAAATA-CCCTCAATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304599 AATTTATCGAAATACCCCT-AATTTGTG
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304626 AAATTA-CCAAA-ACACCCTCGATTTGTA
1 AAATTATCGAAATAC-CCCTCAATTTGTA
*
75304653 AAATTACCGAAA-A-CCCTCAATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304679 AAATTATCGAAACA-CCCTCGATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
* * *
75304706 AAATTATAGAAATA-CCCTCTATTTGTG
1 AAATTATCGAAATACCCCTCAATTTGTA
* *
75304733 AGATTA-CCAAA-ACACCCTCAATTTGTA
1 AAATTATCGAAATAC-CCCTCAATTTGTA
75304760 AAATTATC-AAA-ACACCCTCAATTTGTA
1 AAATTATCGAAATAC-CCCTCAATTTGTA
* *
75304787 AAATTATCGAAATA-TCCTCGATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
*
75304814 AAATTAGT-GAAATA-CCCTCGATTTGTA
1 AAATTA-TCGAAATACCCCTCAATTTGTA
* *
75304841 AAATTACCGAAACA-CCC-CAATTTGTA
1 AAATTATCGAAATACCCCTCAATTTGTA
*
75304867 AAATTATTGAAATACCC
1 AAATTATCGAAATACCC
75304884 TTGTAGTGTA
Statistics
Matches: 353, Mismatches: 45, Indels: 40
0.81 0.10 0.09
Matches are distributed among these distances:
25 7 0.02
26 92 0.26
27 239 0.68
28 14 0.04
29 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (28 bp):
AAATTATCGAAATACCCCTCAATTTGTA
Found at i:75304521 original size:54 final size:55
Alignment explanation
Indices: 75304439--75304883 Score: 452
Period size: 54 Copynumber: 8.3 Consensus size: 55
75304429 TAATAAAGAG
* * * *
75304439 AAATTATCGAAATACCCCT-GGTTTGTAAAATTACCGAAGTACCCCCGATTTGTA
1 AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* **
75304493 AAATTACCGAAATACCCCT-GATTTGTAAAATTA-TTAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* ***
75304546 AAATTA-CTGAAATA-CCCTCGA-TTGTGAAATTATTAAAATACCCTCAATTTGTA
1 AAATTATC-GAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* * * * * *
75304599 AATTTATCGAAATACCCCT-AATTTGTGAAATTACCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* * * * *
75304653 AAATTACCGAAA-A-CCCTCAATTTGTAAAATTATCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* * * * * *
75304706 AAATTATAGAAATA-CCCTCTATTTGTGAGATTACCAAAACACCCTCAATTTGTA
1 AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
* * * *
75304760 AAATTATC-AAA-ACACCCTCAATTTGTAAAATTATCGAAATATCCTCGATTTGTA
1 AAATTATCGAAATAC-CCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
*
75304814 AAATTAGT-GAAATA-CCCTCGATTTGTAAAATTACCGAAACACCC-CAATTTGTA
1 AAATTA-TCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
*
75304867 AAATTATTGAAATACCC
1 AAATTATCGAAATACCC
75304884 TTGTAGTGTA
Statistics
Matches: 334, Mismatches: 42, Indels: 30
0.82 0.10 0.07
Matches are distributed among these distances:
52 21 0.06
53 126 0.38
54 182 0.54
55 4 0.01
56 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (55 bp):
AAATTATCGAAATACCCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTA
Found at i:75304612 original size:80 final size:80
Alignment explanation
Indices: 75304439--75304884 Score: 490
Period size: 80 Copynumber: 5.5 Consensus size: 80
75304429 TAATAAAGAG
* ** * * *
75304439 AAATTATCGAAATACCCCTGGTTTGTAAAATTACCGAAGTACCCCCGATTTGTAAAATTACCGAA
1 AAATTATCGAAACACCCC-AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAA
*
75304504 ATACCC-CTGATTTGTA
65 ATACCCTC-AATTTGTA
* * * ***
75304520 AAATTAT-TAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGA-TTGTGAAATTATTAAA
1 AAATTATCGAAACACCC-CAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAA
75304583 ATACCCTCAATTTGTA
65 ATACCCTCAATTTGTA
* * * ** *
75304599 AATTTATCGAAATACCCCTAATTTGTGAAATTACCAAAACACCCTCGATTTGTAAAATTACCGAA
1 AAATTATCGAAACACCCC-AATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAA
75304664 A-ACCCTCAATTTGTA
65 ATACCCTCAATTTGTA
* * * * *
75304679 AAATTATCGAAACACCCTCGATTTGTAAAATTA-TAGAAATACCCTCTATTTGTGAGATTACCAA
1 AAATTATCGAAACACCC-CAATTTGTAAAATTACT-GAAATACCCTCGATTTGTAAAATTACCGA
*
75304743 AACACCCTCAATTTGTA
64 AATACCCTCAATTTGTA
* * **
75304760 AAATTATCAAAACACCCTCAATTTGTAAAATTA-TCGAAATATCCTCGATTTGTAAAATTAGTGA
1 AAATTATCGAAACACCC-CAATTTGTAAAATTACT-GAAATACCCTCGATTTGTAAAATTACCGA
*
75304824 AATACCCTCGATTTGTA
64 AATACCCTCAATTTGTA
* *
75304841 AAATTACCGAAACACCCCAATTTGTAAAATTATTGAAATACCCT
1 AAATTATCGAAACACCCCAATTTGTAAAATTACTGAAATACCCT
75304885 TGTAGTGTAA
Statistics
Matches: 309, Mismatches: 47, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
79 32 0.10
80 156 0.50
81 121 0.39
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (80 bp):
AAATTATCGAAACACCCCAATTTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAA
TACCCTCAATTTGTA
Found at i:75305436 original size:11 final size:11
Alignment explanation
Indices: 75305420--75305445 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
75305410 ATTGCATGTA
75305420 TGATATTATTG
1 TGATATTATTG
75305431 TGATATTATTG
1 TGATATTATTG
75305442 TGAT
1 TGAT
75305446 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:75307825 original size:28 final size:28
Alignment explanation
Indices: 75307794--75307856 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
75307784 GAAGTAGTTG
75307794 GGCCTAATGGGCCATGTGAACGAGATTT
1 GGCCTAATGGGCCATGTGAACGAGATTT
*
75307822 GGCCTGATGGGCCATGTGAACGAGATTT
1 GGCCTAATGGGCCATGTGAACGAGATTT
75307850 GGCCTAA
1 GGCCTAA
75307857 AGGGGTCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (28 bp):
GGCCTAATGGGCCATGTGAACGAGATTT
Found at i:75308201 original size:27 final size:28
Alignment explanation
Indices: 75308171--75308644 Score: 407
Period size: 27 Copynumber: 17.6 Consensus size: 28
75308161 TAATAAAGAG
*
75308171 AAATTACCGAAATACCCCT-GGTTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
*** *
75308198 AAATTTTTGAAGTA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* *
75308225 AAATTATCAAAATA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* *
75308252 AAATCACCGAAATACCCC-CGATTTATA
1 AAATTACCGAAATACCCCTCGATTTGTA
* * * *
75308279 AAATTATCAAAATA-CCCTTGA-TTGTG
1 AAATTACCGAAATACCCCTCGATTTGTA
* *
75308305 AAATTACTGAAATA-CCCTCAATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* * *
75308332 AAATAATCGAAATACCCC-CGATTTGTG
1 AAATTACCGAAATACCCCTCGATTTGTA
75308359 AAATTACCGAAATA--CCTCGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* * *
75308385 AAATTAACGAAACA-CCCTCGATATGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* **
75308412 AAATTA-C-AAAAACACATTCGATTTGTA
1 AAATTACCGAAATAC-CCCTCGATTTGTA
* * *
75308439 AAATTATCGAAATACCCC-CGAATTGTG
1 AAATTACCGAAATACCCCTCGATTTGTA
*
75308466 AAATTACCGAAACA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* * *
75308493 AAATTATCGAAACA-ACCTCGATTTG-A
1 AAATTACCGAAATACCCCTCGATTTGTA
* *
75308519 AGAATTACC-AAA-ACACCATCGATTTATA
1 A-AATTACCGAAATAC-CCCTCGATTTGTA
* **
75308547 AAACTACCGAAATA-CCCTTAATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
75308574 AAATTACCGAAATA-CCCTCGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
* *
75308601 AAATTACCGCAACACCCC-CGATTTGTA
1 AAATTACCGAAATACCCCTCGATTTGTA
**
75308628 AAATTATTGAAATACCC
1 AAATTACCGAAATACCC
75308645 TTGTAGTGTA
Statistics
Matches: 359, Mismatches: 69, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
25 7 0.02
26 55 0.15
27 275 0.77
28 16 0.04
29 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (28 bp):
AAATTACCGAAATACCCCTCGATTTGTA
Found at i:75308253 original size:54 final size:54
Alignment explanation
Indices: 75308171--75308645 Score: 490
Period size: 54 Copynumber: 8.8 Consensus size: 54
75308161 TAATAAAGAG
* * *** *
75308171 AAATTACCGAAATACCC-CTGGTTTGTAAAATTTTTGAAGTACCCTCGATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
75308225 AAATTATCAAAATACCCTCGATTTGTAAAATCACCGAAATACCCCCGATTTATA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * *
75308279 AAATTATCAAAATACCCTTGA-TTGTGAAATTACTGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * *
75308332 AAATAATCGAAATACCCCCGATTTGTGAAATTACCGAAATA-CCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * ** * **
75308385 AAATTAACGAAACACCCTCGATATGTAAAATTACAAAAACACATTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * *
75308439 AAATTATCGAAATACCCCCGAATTGTGAAATTACCGAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * * *
75308493 AAATTATCGAAACAACCTCGATTTG-AAGAATTACCAAAACACCATCGATTTATA
1 AAATTATCGAAATACCCTCGATTTGTAA-AATTACCGAAATACCCTCGATTTGTA
* * **
75308547 AAACTACCGAAATACCCTTAATTTGTAAAATTACCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
* * * * **
75308601 AAATTACCGCAACACCCCCGATTTGTAAAATTATTGAAATACCCT
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCT
75308646 TGTAGTGTAA
Statistics
Matches: 346, Mismatches: 70, Indels: 10
0.81 0.16 0.02
Matches are distributed among these distances:
53 87 0.25
54 256 0.74
55 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTA
Found at i:75308658 original size:81 final size:81
Alignment explanation
Indices: 75308171--75308645 Score: 472
Period size: 81 Copynumber: 5.9 Consensus size: 81
75308161 TAATAAAGAG
* *** * * *
75308171 AAATTACCGAAATACCC-CTGGTTTGTAAAATTTTTGAAGTACCCTCGATTTGTAAAATTATCAA
1 AAATTACCGAAATACCCTC-GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGA
75308235 AATACCCTCGATTTGTA
65 AATACCCTCGATTTGTA
* * * * * * * *
75308252 AAATCACCGAAATACCCCCGATTTATAAAATTATCAAAATACCCTTGA-TTGTGAAATTACTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
*
75308316 ATACCCTCAATTTGTA
66 ATACCCTCGATTTGTA
* * * * *
75308332 AAATAATCGAAATACCCCCGATTTGTGAAATTACCGAAATA-CCTCGATTTGTAAAATTAACGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
* *
75308396 ACACCCTCGATATGTA
66 ATACCCTCGATTTGTA
** * ** * * * *
75308412 AAATTACAAAAACACATTCGATTTGTAAAATTATCGAAATACCCCCGAATTGTGAAATTACCGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
*
75308477 ACACCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * * * * * * *
75308493 AAATTATCGAAACAACCTCGATTTG-AAGAATTACCAAAACACCATCGATTTATAAAACTACCGA
1 AAATTACCGAAATACCCTCGATTTGTAA-AATTACCGAAATACCCTCGATTTGTAAAATTACCGA
**
75308557 AATACCCTTAATTTGTA
65 AATACCCTCGATTTGTA
* * * **
75308574 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGCAACACCCCCGATTTGTAAAATTATTGAA
1 AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
75308639 ATACCCT
66 ATACCCT
75308646 TGTAGTGTAA
Statistics
Matches: 319, Mismatches: 70, Indels: 10
0.80 0.18 0.03
Matches are distributed among these distances:
79 5 0.02
80 121 0.38
81 190 0.60
82 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
ATACCCTCGATTTGTA
Found at i:75320870 original size:43 final size:42
Alignment explanation
Indices: 75320820--75320968 Score: 165
Period size: 43 Copynumber: 3.5 Consensus size: 42
75320810 TATCGTAGAT
* *
75320820 ATGGTCTTGCATGTTAA-CACGTATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATG-TAATCAC-TATCGATGCCAATGTCCCAGAC
* * * * *
75320863 AAGGTCTTACACGAAATCAATTAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATC-ACTATCGATGCCAATGTCCCAGAC
* * *
75320906 ATGGTCTTACATGTAATCTCAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACTAT-CGATGCCAATGTCCCAGAC
75320949 ATGGTCTTACATGTAATCAC
1 ATGGTCTTACATGTAATCAC
75320969 ATCTCGATAA
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
42 3 0.03
43 83 0.95
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCACTATCGATGCCAATGTCCCAGAC
Found at i:75321709 original size:21 final size:23
Alignment explanation
Indices: 75321683--75321725 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
75321673 AAAAACGTAG
75321683 AAATCA-TCA-AAAACTGAGCTA
1 AAATCACTCACAAAACTGAGCTA
*
75321704 AAATCACTCACAAAATTGAGCT
1 AAATCACTCACAAAACTGAGCT
75321726 TGAAGTTGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.49, C:0.21, G:0.09, T:0.21
Consensus pattern (23 bp):
AAATCACTCACAAAACTGAGCTA
Found at i:75327116 original size:6 final size:6
Alignment explanation
Indices: 75327098--75327211 Score: 76
Period size: 6 Copynumber: 18.3 Consensus size: 6
75327088 AAGAAACATT
*
75327098 ATCAGA A-CTAGA ATCAGA ATCAGA ATCA-A AACTAGGTA A-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATC-A-G-A ATCAGA ATCAGA
* *
75327147 ATCAGA ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
75327197 ATCAAAA ATCAGA AT
1 ATC-AGA ATCAGA AT
75327212 GTGGATGCAA
Statistics
Matches: 87, Mismatches: 7, Indels: 28
0.71 0.06 0.23
Matches are distributed among these distances:
5 10 0.11
6 58 0.67
7 13 0.15
8 4 0.05
9 2 0.02
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:75327142 original size:31 final size:29
Alignment explanation
Indices: 75327107--75327211 Score: 103
Period size: 31 Copynumber: 3.6 Consensus size: 29
75327097 TATCAGAACT
*
75327107 AGAATCAGAATCAGAATCAAAACTAGGTAAC
1 AGAATCAAAATCAGAATC--AACTAGGTAAC
*
75327138 AGAATCAGAATCAGAAT---C-AGGTAAC
1 AGAATCAAAATCAGAATCAACTAGGTAAC
75327163 AGAATCAAAATCAGAATCAGTA-TCAGGTAAC
1 AGAATCAAAATCAGAATCA--ACT-AGGTAAC
75327194 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
75327212 GTGGATGCAA
Statistics
Matches: 65, Mismatches: 1, Indels: 15
0.80 0.01 0.19
Matches are distributed among these distances:
25 23 0.35
26 1 0.02
31 30 0.46
32 11 0.17
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.17
Consensus pattern (29 bp):
AGAATCAAAATCAGAATCAACTAGGTAAC
Found at i:75327146 original size:25 final size:25
Alignment explanation
Indices: 75327112--75327208 Score: 101
Period size: 25 Copynumber: 3.8 Consensus size: 25
75327102 GAACTAGAAT
75327112 CAGAATCAGAATCAAAA-CTAGGTAA
1 CAGAATCAGAATCAAAATC-AGGTAA
*
75327137 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAAAATCAGGTAA
* * *
75327162 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAAAATCAGGTAA
75327186 CAGGTAA-CAGAATCAAAAATCAG
1 CA-G-AATCAGAATC-AAAATCAG
75327209 AATGTGGATG
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
24 5 0.08
25 48 0.77
26 9 0.15
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.16
Consensus pattern (25 bp):
CAGAATCAGAATCAAAATCAGGTAA
Found at i:75327378 original size:27 final size:26
Alignment explanation
Indices: 75327348--75327449 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
75327338 GCTCAGTTTT
*
75327348 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTG-CAGAGCCACCAGATA
75327375 CAGATATTGTCGCAGAGCCACCAG-TA
1 CAGATATTGT-GCAGAGCCACCAGATA
* * *
75327401 CATATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGT-GCAGAGCCACCAGATA
* *
75327429 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGT-GCAGAGCCAC
75327450 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGCAGAGCCACCAGATA
Found at i:75327636 original size:22 final size:22
Alignment explanation
Indices: 75327608--75327671 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
75327598 GCAAATACGT
*
75327608 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
75327630 TTGGCACAGAGCCAT-ATGGAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
75327652 TTGACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
75327672 AAAGGCTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:75328153 original size:27 final size:27
Alignment explanation
Indices: 75328117--75328320 Score: 291
Period size: 27 Copynumber: 7.6 Consensus size: 27
75328107 TTCCCCACAA
* * *
75328117 GGTATCTCGGTAATTCCACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
75328144 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
75328171 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
75328198 GATATTTTGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
75328225 GGTATTGCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
75328252 GGTATTGCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
75328279 GGTATTTCGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
75328306 GGTATTTCGGTAATT
1 GGTATTTCGGTAATT
75328321 TTGTAAATCG
Statistics
Matches: 161, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:75328334 original size:27 final size:27
Alignment explanation
Indices: 75328304--75328590 Score: 156
Period size: 27 Copynumber: 10.7 Consensus size: 27
75328294 CTACCCTACA
**
75328304 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
*** * * ** **
75328331 AGGGTAAAACGATAATTCTGTAAATTA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
75328358 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
** ** *
75328385 AGGGTATTTCAATAATTTTACAGGTTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
75328412 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
75328438 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * *
75328465 AGGGGTATTTTGATAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTACAAATCG
* *
75328492 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTCGGTAATTTTACAAATCG
* * * * *
75328519 AGGGGTTTTTTGGTAA-TTTATAAACCA
1 A-GGGTATTTCGGTAATTTTACAAATCG
** *
75328546 AGGGTATTTTAGTAATTTTACAAAATAG
1 AGGGTATTTCGGTAATTTTAC-AAATCG
*
75328574 -GGGTATTTTGGTAATTT
1 AGGGTATTTCGGTAATTT
75328591 GGTAAACTAA
Statistics
Matches: 210, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
26 24 0.11
27 183 0.87
28 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:75328455 original size:54 final size:54
Alignment explanation
Indices: 75328413--75328590 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
75328403 TACAGGTTGA
75328413 GGGTATTTCAG-TAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTT-AGATAATTTCACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAG
* *
75328467 GGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* * * * * * * **
75328521 GGGTTTTTTGGTAATTT-ATAAACCAAGGGTATTTTAGTAATTTTACAAAATAG
1 GGGTATTTAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
* *
75328574 GGGTATTTTGGTAATTT
1 GGGTATTTAGATAATTT
75328591 GGTAAACTAA
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
53 47 0.42
54 63 0.57
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAG
Found at i:75328582 original size:80 final size:81
Alignment explanation
Indices: 75328359--75328590 Score: 272
Period size: 81 Copynumber: 2.9 Consensus size: 81
75328349 TGTAAATTAA
* ** * ** ** * **
75328359 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTAC-AGGTTGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAATAG-GGGTATTTTG
*
75328423 GTAATTTCACAAATCAG
65 GTAATTTCACAAACCAG
* *
75328440 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAATAGGGGTATTTTGG
*
75328505 TAATTTTACAAACCAG
66 TAATTTCACAAACCAG
* *
75328521 GGGTTTTTTGGTAA-TTTATAAACCAAGGGTATTTT-AGTAATTTTACAAAATAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGA-TAATTTTACAAAATAGGGGTATTTTG
75328584 GTAATTT
65 GTAATTT
75328591 GGTAAACTAA
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.01
80 51 0.39
81 76 0.58
82 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAATAGGGGTATTTTGG
TAATTTCACAAACCAG
Found at i:75328606 original size:53 final size:52
Alignment explanation
Indices: 75328441--75328606 Score: 206
Period size: 53 Copynumber: 3.1 Consensus size: 52
75328431 ACAAATCAGG
* * *
75328441 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAA-TTTATAAACTA-A
* *
75328495 GGTATTTTGGTAATTTTACAAACCAGGGGTTTTTTGGTAATTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTATAAACTAA
* ** *
75328547 GGGTATTTTAGTAATTTTACAAAATAGGGGTATTTTGGTAATTTGGTAAACTAA
1 -GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT-ATAAACTAA
*
75328601 AGTATT
1 GGTATT
75328607 CTAAACAAGG
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
53 53 0.54
54 45 0.46
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (52 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTATAAACTAA
Found at i:75343989 original size:49 final size:49
Alignment explanation
Indices: 75343917--75344100 Score: 226
Period size: 49 Copynumber: 3.7 Consensus size: 49
75343907 CGAAGCTATC
* *
75343917 TGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTT
* * * *
75343966 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG-TT
* * * *
75344015 TCGGGTACGCATAGTAGTCTGGACTTAGTACTACACATGCGACCAACAGTC
1 T--GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTT
* *
75344066 TGGTACACGTAGGAGCCTGCACTTAGTACTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
75344101 CGTGACCTCA
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
48 4 0.04
49 68 0.61
51 36 0.32
52 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTT
Found at i:75344041 original size:100 final size:100
Alignment explanation
Indices: 75343918--75344105 Score: 331
Period size: 100 Copynumber: 1.9 Consensus size: 100
75343908 GAAGCTATCT
* *
75343918 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTTTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGGAGCC
75343983 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* **
75344018 GGTACGCATAGTAGTCTGGACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGGAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGGAGCC
75344083 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
75344106 CCTCACCATA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGGAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:75349240 original size:30 final size:30
Alignment explanation
Indices: 75349206--75349263 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
75349196 AAGCCTTTTC
*
75349206 CCACACAGGCTGAG-CACACGCCCGTGTGAG
1 CCACACAGGCTG-GTCACACGCCCATGTGAG
75349236 CCACACAGGCTGGTCACACGCCCATGTG
1 CCACACAGGCTGGTCACACGCCCATGTG
75349264 CCAGCTCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.22, C:0.38, G:0.28, T:0.12
Consensus pattern (30 bp):
CCACACAGGCTGGTCACACGCCCATGTGAG
Found at i:75355681 original size:44 final size:44
Alignment explanation
Indices: 75355551--75355891 Score: 152
Period size: 44 Copynumber: 7.6 Consensus size: 44
75355541 TTTAATCTAT
* * * * * * * *
75355551 TCCACTACGACTTCAGGGAAATAAGATTCTCTATCTTCAGTGTGC
1 TCCACTGCAACTTCAGGGAGATAAGACT-TATAACTTCAATCTGC
* *
75355596 TCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGC
* ** * *
75355640 TCCACTGCAACTTCAGGGAGATAAGGCTTATTGCTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGC
* * * ** * **
75355684 TCTACGGCAGCTTCAAAGAGATAAGA-TTCACTATCCCCAATCTAG-
1 TCCACTGCAACTTCAGGGAGATAAGACTT-A-TAACTTCAATCT-GC
* * * *
75355729 TCCACTGTAATTTTAGGGAGATAAGA--TATAATTTCAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGC
* * * ** * * *
75355771 TCCACTACTACTTTAGGGGGATTTGATTTGTAATTTGTAGCTTCAATCTGC
1 TCCACTGCAACTTCA--GGGA---GATAAG--ACTTATAACTTCAATCTGC
* * ** * *
75355822 TCCACTGCAACTTCATGGAGATAAG-GTTAATGGCTTCGATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTT-ATAACTTCAATCTGC
* *
75355866 TCCACTGTAACTTCAGGAAGATAAGA
1 TCCACTGCAACTTCAGGGAGATAAGA
75355892 TTCACCATGG
Statistics
Matches: 218, Mismatches: 63, Indels: 30
0.70 0.20 0.10
Matches are distributed among these distances:
41 1 0.00
42 19 0.09
43 5 0.02
44 108 0.50
45 48 0.22
46 4 0.02
47 4 0.02
49 4 0.02
51 25 0.11
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTATAACTTCAATCTGC
Found at i:75361424 original size:15 final size:14
Alignment explanation
Indices: 75361396--75361423 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
75361386 AAAATACGGG
75361396 GTCCCTCATTTTTT
1 GTCCCTCATTTTTT
75361410 GTCCCTCATTTTTT
1 GTCCCTCATTTTTT
75361424 TTTCTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.07, T:0.57
Consensus pattern (14 bp):
GTCCCTCATTTTTT
Found at i:75362570 original size:22 final size:22
Alignment explanation
Indices: 75362536--75362578 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
75362526 TATCCAAATA
*
75362536 ATAATAATAAAAT-AGTAGCAAT
1 ATAATAACAAAATGA-TAGCAAT
*
75362558 ATAATAACGAAATGATAGCAA
1 ATAATAACAAAATGATAGCAA
75362579 AACAATGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (22 bp):
ATAATAACAAAATGATAGCAAT
Found at i:75366806 original size:42 final size:42
Alignment explanation
Indices: 75366728--75366873 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
75366718 CTTTCCGTTT
* * * * *
75366728 AGCTCTCACGAGCTTCTGTTTAACTCATATGAGTTTCTATTC
1 AGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTCTATTC
* * *
75366770 GGCT-TTATTGAGCTTCTATTTAACCCTTATGGGTTTCTGTTC
1 AGCTCTTA-TGAGCTTCTGTTTAACCCTTATGGGTTTCTATTC
* *
75366812 AGCTCTTATGAGCTT-TCGTTCAACCCTTATGGGTTTCTGGTT-
1 AGCTCTTATGAGCTTCT-GTTTAACCCTTATGGGTTTCT-ATTC
* *
75366854 AGCTCTCATAAGCTTCTGTT
1 AGCTCTTATGAGCTTCTGTT
75366874 CAGCCTCCGG
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.03
42 76 0.88
43 7 0.08
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (42 bp):
AGCTCTTATGAGCTTCTGTTTAACCCTTATGGGTTTCTATTC
Found at i:75366807 original size:21 final size:21
Alignment explanation
Indices: 75366791--75366850 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
75366781 GCTTCTATTT
75366791 AACCCTTATGGGTTTCTGTTC
1 AACCCTTATGGGTTTCTGTTC
* * *
75366812 AGCTCTTATGAGCTTTC-GTTC
1 AACCCTTATG-GGTTTCTGTTC
75366833 AACCCTTATGGGTTTCTG
1 AACCCTTATGGGTTTCTG
75366851 GTTAGCTCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
20 5 0.16
21 21 0.68
22 5 0.16
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.42
Consensus pattern (21 bp):
AACCCTTATGGGTTTCTGTTC
Found at i:75368244 original size:28 final size:28
Alignment explanation
Indices: 75368204--75368258 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
75368194 ATGAGAGTAA
75368204 GGTAGTCAAAATAAGACCTTATAAATAT
1 GGTAGTCAAAATAAGACCTTATAAATAT
75368232 GGTAGTCAAAATAAGACCTTATAAATA
1 GGTAGTCAAAATAAGACCTTATAAATA
75368259 CCCAACAGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (28 bp):
GGTAGTCAAAATAAGACCTTATAAATAT
Found at i:75376848 original size:47 final size:46
Alignment explanation
Indices: 75376657--75376877 Score: 161
Period size: 47 Copynumber: 4.7 Consensus size: 46
75376647 TGTGAGAGCT
* * *
75376657 AGTGTAAGACCATGTCTGGGACATGGCATTAG-CATTGAGATGAGT-GCT
1 AGTGTAAGACCATGTCTGGGACATGGC-TTCGAC-TCGAGAT-A-TAGCC
* * *
75376705 AGTGTAAGA-CATGTCTGGGACAT-G-TATCGGCCTCGATGACATAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCT-TC-GACTCGA-GATAT-AGCC
* * *
75376752 AGTGTAAGA-CATGTCTGGGACAT-GCGTT-GGCTACGAGACGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGC-TTCGACT-CGAGA-TATAGCC
*
75376798 AGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCTTCGACTCGAGATAT-AGCC
* * *
75376845 AGTGTAAGACCATGTTTGGGACACGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCTTCGAC
75376878 CCCTTACCCC
Statistics
Matches: 145, Mismatches: 14, Indels: 29
0.77 0.07 0.15
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 26 0.18
47 100 0.69
48 15 0.10
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCTTCGACTCGAGATATAGCC
Found at i:75376859 original size:94 final size:95
Alignment explanation
Indices: 75376657--75376873 Score: 234
Period size: 94 Copynumber: 2.3 Consensus size: 95
75376647 TGTGAGAGCT
**
75376657 AGTGTAAGACCATGTCTGGGACATGGCATTAGCATTGAGATGAGTGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGCAGAGAGATGAGTGCTAGTGTAAGACATGTCTG
* *
75376722 GGACATGTATCGGCCTCGATGACATAAGTC
66 GGACATGTATCGGACTCGATGACATAAGCC
* *
75376752 AGTGTAAGA-CATGTCTGGGACAT-GCGTTGGCTACGAGACGAT-AGT-C-AGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATTAGC-A-GAGA-GATGAGTGCTAGTGTAAGA-CATG
* *
75376812 TCTGGGACATGGCT-TC-GACTTGA-GATATAAGCC
62 TCTGGGACAT-G-TATCGGACTCGATGACATAAGCC
* *
75376845 AGTGTAAGACCATGTTTGGGACACGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
75376874 CGACCCCTTA
Statistics
Matches: 103, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
93 32 0.31
94 47 0.46
95 20 0.19
96 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTAGCAGAGAGATGAGTGCTAGTGTAAGACATGTCTG
GGACATGTATCGGACTCGATGACATAAGCC
Found at i:75379563 original size:21 final size:22
Alignment explanation
Indices: 75379526--75379568 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
75379516 TTTATAAATA
75379526 ATAAAAAAATATGGATAGTTTTT
1 ATAAAAAAATATGGATA-TTTTT
75379549 ATAAAAAAAT-T-GATATTTTT
1 ATAAAAAAATATGGATATTTTT
75379569 CAAAGTATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 4 0.20
22 1 0.05
23 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (22 bp):
ATAAAAAAATATGGATATTTTT
Found at i:75384189 original size:42 final size:43
Alignment explanation
Indices: 75384112--75384270 Score: 191
Period size: 42 Copynumber: 3.7 Consensus size: 43
75384102 AGCTCGTACA
* * *
75384112 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
*
75384155 ATGCCATTGTCCC-GACAG-GGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
** *
75384196 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
*
75384240 ATTCCAATGTCCCAGACGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGA
75384271 TAGCACATAT
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
41 13 0.13
42 36 0.36
43 19 0.19
44 31 0.31
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:75385666 original size:21 final size:22
Alignment explanation
Indices: 75385640--75385680 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75385630 CTCTTAACAC
75385640 AGGGGC-ACACGCCCATGTGGG
1 AGGGGCAACACGCCCATGTGGG
*
75385661 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCATGTG
75385681 ACAATTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:75397630 original size:46 final size:46
Alignment explanation
Indices: 75397563--75397734 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
75397553 AACCCGCCCC
*
75397563 TAAGTGAACTCAGACTCAACTCAACGA-TCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGT-TCGGGCGTTCGCATCCA
*
75397609 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
75397657 TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
75397702 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
75397735 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 57 0.55
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:75397676 original size:93 final size:93
Alignment explanation
Indices: 75397568--75397738 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75397558 GCCCCTAAGT
* *
75397568 GAACTCAGACTCAACTCAACGA-TCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGT-TCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75397632 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
75397661 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75397726 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75397739 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75401232 original size:16 final size:16
Alignment explanation
Indices: 75401213--75401243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75401203 CTTCTTCACT
75401213 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
75401229 TACTTACTTACTTAA
1 TACTCACTTACTTAA
75401244 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:75401249 original size:20 final size:20
Alignment explanation
Indices: 75401210--75401249 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
75401200 AAACTTCTTC
* *
75401210 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
75401230 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
75401250 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:75404302 original size:37 final size:37
Alignment explanation
Indices: 75404252--75404330 Score: 140
Period size: 37 Copynumber: 2.1 Consensus size: 37
75404242 TTATTACGAA
* *
75404252 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
75404289 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
75404326 GTCTT
1 GTCTT
75404331 TAGAGCTCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:75404527 original size:47 final size:47
Alignment explanation
Indices: 75404449--75404762 Score: 517
Period size: 47 Copynumber: 6.7 Consensus size: 47
75404439 CCCTTCGGGA
* * * * * *
75404449 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75404496 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75404543 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75404590 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75404636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75404683 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75404729 CTTATCACATATATACA-GTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
75404763 AGAATCCTAA
Statistics
Matches: 254, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
45 15 0.06
46 71 0.28
47 168 0.66
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75404669 original size:93 final size:93
Alignment explanation
Indices: 75404449--75404762 Score: 522
Period size: 93 Copynumber: 3.4 Consensus size: 93
75404439 CCCTTCGGGA
* * * * * * *
75404449 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75404514 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGG-CATTAGGC
*
75404543 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75404608 TTTCACATTCATCACATCGGCATTAGGC
66 TTTCACATTCATCACATCGGCATTAGGC
*
75404636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75404701 TTTCACATTCATCACATCGGCATTAGGC
66 TTTCACATTCATCACATCGGCATTAGGC
*
75404729 CTTATCACATATATACA-GTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATCCATCACAT
75404763 AGAATCCTAA
Statistics
Matches: 210, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
92 15 0.07
93 118 0.56
94 77 0.37
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCATTAGGC
Found at i:75404702 original size:140 final size:140
Alignment explanation
Indices: 75404449--75404762 Score: 524
Period size: 140 Copynumber: 2.2 Consensus size: 140
75404439 CCCTTCGGGA
* * * * *
75404449 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
75404514 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
75404579 GGCCATTAGGC
131 GG-CATTAGGC
* * *
75404590 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
75404654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
75404719 GGCATTAGGC
131 GGCATTAGGC
*
75404729 CTTATCACATATATACA-GTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATCCATCACAT
75404763 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
138 15 0.09
139 25 0.15
140 89 0.55
141 34 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCATTAGGC
Found at i:75408594 original size:40 final size:40
Alignment explanation
Indices: 75408550--75408772 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
75408540 CCAGCATGAT
* * * * * * *
75408550 TGCTCTTCGGGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*** *
75408590 TGCTCTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTC-CGGATACATCACTAGCACGAA
75408630 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75408670 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75408710 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
75408750 TGCTCTTCGGAACTTAGTCCGGA
1 TGCTCTTCGGAACTTAGTCCGGA
75408773 CATCATTCGA
Statistics
Matches: 171, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 169 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:75409119 original size:29 final size:29
Alignment explanation
Indices: 75409080--75409158 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75409070 CTTAATAATC
*
75409080 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75409110 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75409139 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75409159 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75410525 original size:37 final size:37
Alignment explanation
Indices: 75410466--75410542 Score: 136
Period size: 37 Copynumber: 2.1 Consensus size: 37
75410456 ATTACGAAGC
* *
75410466 CTTACCCGGACATAATCTCCACACGTAGTCATCGGGT
1 CTTACCCGGACAAAATCCCCACACGTAGTCATCGGGT
75410503 CTTACCCGGACAAAATCCCCACACGTAGTCATCGGGT
1 CTTACCCGGACAAAATCCCCACACGTAGTCATCGGGT
75410540 CTT
1 CTT
75410543 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (37 bp):
CTTACCCGGACAAAATCCCCACACGTAGTCATCGGGT
Found at i:75410723 original size:47 final size:47
Alignment explanation
Indices: 75410661--75410976 Score: 494
Period size: 47 Copynumber: 6.7 Consensus size: 47
75410651 CCCTTCGGGA
* * * * * *
75410661 CTTATCACATTTATACACTTTCACATCCATCAC-GCTGCCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATC-GGCCATTAGGC
* *
75410708 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75410755 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75410801 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75410848 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75410895 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75410942 CTTATCACATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
75410977 AGAATCCTAA
Statistics
Matches: 252, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 47 0.19
47 204 0.81
48 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75410913 original size:140 final size:142
Alignment explanation
Indices: 75410661--75410976 Score: 514
Period size: 140 Copynumber: 2.2 Consensus size: 142
75410651 CCCTTCGGGA
* * * *
75410661 CTTATCACATTTATACACTTTCACATCCATCAC-GCTGCCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATCCATCACATCTGCCCACTAGGCCCTATCACATATATACA
75410725 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
75410790 CGGC-ATTAGGC
131 CGGCTATTAGGC
* * * * *
75410801 CTTATCACATATATACACTTTCACATTCATCACATC-GGCTATTAGGCCTTATCACATATATACA
1 CTTATCACATATATACACTTTCACATCCATCACATCTGCCCACTAGGCCCTATCACATATATACA
75410865 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
75410930 CGGCTATTAGGC
131 CGGCTATTAGGC
75410942 CTTATCACATATATACA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
75410977 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
140 123 0.75
141 40 0.25
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATCCATCACATCTGCCCACTAGGCCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCTATTAGGC
Found at i:75418157 original size:55 final size:53
Alignment explanation
Indices: 75418070--75418324 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 53
75418060 ATTAGGGTTT
* *
75418070 AAGGATACCATGTAAGACCATGGCAAGGCATGGAAATTGGTAAAGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGT-AAGTTTCTAAGGC
* * * *
75418125 AAGGATATCATGTAAGACCATATCAAGACATGGCATTGATAAGTTTCTATGAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTA--AGGC
* * * * * *
75418180 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTTGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
75418233 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * * *
75418282 AAGGATACCACGTAAGGCCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-AATTGGTAAG
75418325 GTACCTGTGT
Statistics
Matches: 167, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 6 0.04
53 42 0.25
54 12 0.07
55 65 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:75418276 original size:108 final size:110
Alignment explanation
Indices: 75418077--75418279 Score: 295
Period size: 108 Copynumber: 1.9 Consensus size: 110
75418067 TTTAAGGATA
* *
75418077 CCATGTAAGACCATGGCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGATACCATGTAAGA
*
75418142 CCATATCAAGACATGGCATTGATAAGTTTCTATGAGGCAAAGGTC
66 CCATATCAAGACATGGCAATGATAAGTTTCTATGAGGCAAAGGTC
* * *
75418187 CCATGTAAGACCATGCCAAGGCATGG-CATTTGT-GAG-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
75418249 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATATCAAGACATGGCAATGATAAGTTTC
75418280 AAAAGGATAC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 50 0.60
109 5 0.06
110 25 0.30
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAAGTTTCTAAGGCAAGGATACCATGTAAGA
CCATATCAAGACATGGCAATGATAAGTTTCTATGAGGCAAAGGTC
Found at i:75424076 original size:47 final size:47
Alignment explanation
Indices: 75423952--75424592 Score: 1138
Period size: 47 Copynumber: 13.5 Consensus size: 47
75423942 GTGTGTATAC
*
75423952 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75423999 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
75424048 GTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424095 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424142 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424191 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424238 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424287 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424334 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424381 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424428 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
75424475 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * * *
75424522 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
75424569 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
75424593 TCCCGAAGGG
Statistics
Matches: 575, Mismatches: 13, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
47 436 0.76
49 139 0.24
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:75426019 original size:40 final size:40
Alignment explanation
Indices: 75425964--75426349 Score: 658
Period size: 40 Copynumber: 9.8 Consensus size: 40
75425954 GAGAATTGAG
75425964 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426004 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426044 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426083 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426122 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75426162 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426202 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426241 AGTGATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
75426280 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
75426320 GGTGTTATATCCGGGCTAGGT--CGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
75426350 ATCATGCTGG
Statistics
Matches: 329, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
38 20 0.06
39 129 0.39
40 180 0.55
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75426173 original size:118 final size:119
Alignment explanation
Indices: 75425964--75426349 Score: 670
Period size: 118 Copynumber: 3.3 Consensus size: 119
75425954 GAGAATTGAG
75425964 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75426029 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
65 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426083 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
*
75426148 AGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75426202 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCC-GGCTAAGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
* * **
75426266 AGAGCATTCGTGCTAGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
66 AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
75426320 GGTGTTATATCCGGGCTAGGT-CGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCGAAGAGCA
75426350 ATCATGCTGG
Statistics
Matches: 257, Mismatches: 9, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
117 9 0.04
118 162 0.63
119 86 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
AGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75426252 original size:158 final size:158
Alignment explanation
Indices: 75425964--75426349 Score: 654
Period size: 158 Copynumber: 2.5 Consensus size: 158
75425954 GAGAATTGAG
75425964 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75426029 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATC
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATC
75426094 CGGGCTAAGT-CCGAAGAGCATTCGTGCT
131 C-GGCTAAGTCCCGAAGAGCATTCGTGCT
*
75426122 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75426187 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATATAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCTAGTGATATAT
75426251 CCGGCTAAGTCCCGAAGAGCATTCGTGCT
130 CCGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** * * *
75426280 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGT--CG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
75426343 AAGAGCA
66 AAGAGCA
75426350 ATCATGCTGG
Statistics
Matches: 217, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
156 9 0.04
157 11 0.05
158 197 0.91
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (158 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAGAGCATTCGTGCTAGTGATATATC
CGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75430187 original size:47 final size:47
Alignment explanation
Indices: 75430055--75430683 Score: 1095
Period size: 47 Copynumber: 13.3 Consensus size: 47
75430045 ATACGTGAAA
75430055 GTATATATGTGATAA-G--TAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430099 GTATATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
75430147 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430194 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430241 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430288 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430335 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430384 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430431 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430478 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430527 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
75430574 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * * * *
75430621 GTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGT
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
75430668 GTATAAATGTGATAAG
1 GTATATATGTGATAAG
75430684 TCCCGAAGGG
Statistics
Matches: 564, Mismatches: 12, Indels: 15
0.95 0.02 0.03
Matches are distributed among these distances:
44 1 0.00
46 30 0.05
47 411 0.73
48 28 0.05
49 94 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
Found at i:75430403 original size:143 final size:141
Alignment explanation
Indices: 75430055--75430683 Score: 1095
Period size: 143 Copynumber: 4.4 Consensus size: 141
75430045 ATACGTGAAA
75430055 GTATATATGTGATAA-G--TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
*
75430117 G-CTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
64 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
75430181 TGAATGTGAAAGT
129 TGAATGTGAAAGT
75430194 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
75430259 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
75430324 AATGTGAAAGT
131 AATGTGAAAGT
75430335 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75430400 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
64 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
75430465 TGAATGTGAAAGT
129 TGAATGTGAAAGT
75430478 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 G--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75430543 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
64 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
75430608 TGAATGTGAAAGT
129 TGAATGTGAAAGT
* * * * * * * *
75430621 GTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75430684 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 9, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
139 15 0.03
140 17 0.04
141 130 0.27
142 29 0.06
143 284 0.60
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGT
Found at i:75437017 original size:28 final size:28
Alignment explanation
Indices: 75436952--75437050 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
75436942 CATGAGATTG
* * *
75436952 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
75436981 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
75437009 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
75437037 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75437051 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:75440878 original size:55 final size:49
Alignment explanation
Indices: 75440782--75440907 Score: 153
Period size: 55 Copynumber: 2.4 Consensus size: 49
75440772 TATGACTTGT
* * *
75440782 CATGGTATTACGTGGTATCCTTTTGAAACTTACCATTGCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTTTGAAACTTACCATTGCCATGCCTCGA
* *
75440831 CATGGTCTTACATGGTATCCTTGCCTTAGAAACCTTACCAATTGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTT---TT-GAAA-CTTACC-ATTGCCATGCCTCGA
75440886 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
75440908 AAACCCTAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
49 20 0.30
52 2 0.03
53 4 0.06
54 6 0.09
55 34 0.52
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (49 bp):
CATGGTCTTACATGGTATCCTTTTGAAACTTACCATTGCCATGCCTCGA
Found at i:75455624 original size:51 final size:49
Alignment explanation
Indices: 75455499--75455639 Score: 165
Period size: 51 Copynumber: 2.8 Consensus size: 49
75455489 AAGCTATCTT
** *
75455499 GGTACGCATAGTAGCCTGCTTTTAGTACTACACATGTGACCAATAGTCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAGTCG
* * * * **
75455548 AGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCACAGTTTTCG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATAGTCG
* *
75455599 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
75455640 TCAACATAGA
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 35 0.46
50 2 0.03
51 39 0.51
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATAGTCG
Found at i:75457205 original size:18 final size:17
Alignment explanation
Indices: 75457184--75457238 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
75457174 ACAATTCTTT
75457184 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
75457202 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
75457219 TCTTCTTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
75457236 TCT
1 TCT
75457239 ATAGTCGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 19 0.59
19 3 0.09
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:75458230 original size:28 final size:28
Alignment explanation
Indices: 75458186--75458276 Score: 107
Period size: 28 Copynumber: 3.4 Consensus size: 28
75458176 ATGGAGGAAG
75458186 TGTTT-TGGTGGCTCTGCCACAAATATC
1 TGTTTCTGGTGGCTCTGCCACAAATATC
* * *
75458213 TGTTTCTGATGGCCCTGCCACAATTATC
1 TGTTTCTGGTGGCTCTGCCACAAATATC
* * *
75458241 TGTATCTGGTGACTCTGTCAC-AATATC
1 TGTTTCTGGTGGCTCTGCCACAAATATC
75458268 TG-TTCTGGT
1 TGTTTCTGGT
75458277 AGCCATGCTG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.11
27 12 0.23
28 35 0.66
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (28 bp):
TGTTTCTGGTGGCTCTGCCACAAATATC
Found at i:75486359 original size:17 final size:17
Alignment explanation
Indices: 75486337--75486377 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
75486327 GGTTAAAACT
75486337 GGGCCCAATGGGCTTAC
1 GGGCCCAATGGGCTTAC
75486354 GGGCCCAATGGGCTTAC
1 GGGCCCAATGGGCTTAC
75486371 GGGCCCA
1 GGGCCCA
75486378 TACGGGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.32, G:0.37, T:0.15
Consensus pattern (17 bp):
GGGCCCAATGGGCTTAC
Found at i:75490291 original size:28 final size:28
Alignment explanation
Indices: 75490257--75490311 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
75490247 CATGGGTGAC
75490257 GACACGGGCGTGTCTAGG-TCGTGTGAAG
1 GACACGGGCGTGTCTAGGCT-GTGTGAAG
75490285 GACACGGGCGTGTCTAGGCTGTGTGAA
1 GACACGGGCGTGTCTAGGCTGTGTGAA
75490312 AACCTTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.18, C:0.18, G:0.42, T:0.22
Consensus pattern (28 bp):
GACACGGGCGTGTCTAGGCTGTGTGAAG
Found at i:75493575 original size:17 final size:18
Alignment explanation
Indices: 75493530--75493576 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
75493520 GTTTATCTAG
75493530 AGTAATTATTATTGAAATA
1 AGTAATT-TTATTGAAATA
* *
75493549 AGTGAATTTTATT-TAATT
1 AGT-AATTTTATTGAAATA
75493567 AGTAATTTTA
1 AGTAATTTTA
75493577 GACATGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 7 0.28
18 6 0.24
19 8 0.32
20 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
AGTAATTTTATTGAAATA
Found at i:75505135 original size:46 final size:46
Alignment explanation
Indices: 75505030--75505157 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
75505020 TGTAACCCGC
* * **
75505030 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-TGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75505075 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75505121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75505158 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 34 0.44
46 44 0.56
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75505176 original size:46 final size:45
Alignment explanation
Indices: 75505038--75505176 Score: 149
Period size: 46 Copynumber: 3.0 Consensus size: 45
75505028 GCCCATAAGC
* * *
75505038 GAACTCGGACTCAACTCAACGAGCTCGG-TGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
75505083 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
75505129 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
75505175 GA
1 GA
75505177 CATGTCACTT
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
45 27 0.32
46 51 0.61
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:75512523 original size:45 final size:45
Alignment explanation
Indices: 75512459--75512632 Score: 172
Period size: 45 Copynumber: 3.8 Consensus size: 45
75512449 TGTAACCCGC
*
75512459 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTAT
* * * * *
75512504 CCATAAGTGAACTTGGACTCAACTCAACAAGCTCGG-ATGCCTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTA--T
* * * *
75512550 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGTAT
* * *
75512597 CCATAAGTGAACTCGGACTCAAGTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
75512633 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 19, Indels: 13
0.76 0.14 0.10
Matches are distributed among these distances:
44 4 0.04
45 35 0.34
46 30 0.29
47 28 0.27
48 2 0.02
49 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGCATTCGTAT
Done.