Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 224 of 362
Found at i:75512573 original size:92 final size:93
Alignment explanation
Indices: 75512466--75512636 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75512456 CGCCCATAAG
* * *
75512466 CGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGTATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
75512530 ACAAGCTCGGATGCCTAGTTACATTTCA
66 ACAAGCTCGGATGCCTAGTTACATTTCA
* *
75512558 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAAGTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
75512623 ACGAGTTCGGATGC
66 ACAAGCTCGGATGC
75512637 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 28 0.39
93 43 0.61
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATTTCA
Found at i:75520112 original size:19 final size:20
Alignment explanation
Indices: 75520070--75520121 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
75520060 ATTGTGCAAT
* *
75520070 CAGAGGCACCGAAGTGTAAA
1 CAGAGACACCAAAGTGTAAA
75520090 CAGAGACACCAAAGTGT-AA
1 CAGAGACACCAAAGTGTAAA
75520109 CAGAGACACCAAA
1 CAGAGACACCAAA
75520122 ATGCAATCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.46, C:0.23, G:0.23, T:0.08
Consensus pattern (20 bp):
CAGAGACACCAAAGTGTAAA
Found at i:75522111 original size:93 final size:93
Alignment explanation
Indices: 75521996--75522166 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75521986 GCCCCTAAGT
*
75521996 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTGGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTGGCATCCATAAATGAACTCGGACTCAACTCA
75522060 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
75522089 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTGGCATCCATAAATGAACTCGGACTCAACTCAA
75522154 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75522167 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTGGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:75522161 original size:46 final size:46
Alignment explanation
Indices: 75521991--75522163 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
75521981 AACCCGCCCC
* * *
75521991 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTGGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* * *
75522037 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
75522085 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
75522130 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75522164 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 58 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:75531599 original size:16 final size:16
Alignment explanation
Indices: 75531557--75531599 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
75531547 ATGTATCGAC
*
75531557 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATACCG
* *
75531573 AAATGCCGAAATACTG
1 AAAAGCCGAAATACCG
*
75531589 AAAAGCTGAAA
1 AAAAGCCGAAA
75531600 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.12
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:75531865 original size:29 final size:29
Alignment explanation
Indices: 75531810--75531899 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
75531800 GTGAGAATGA
* * *
75531810 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
75531838 ATATAAATGTGATTTGGGCCTAGTGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
75531867 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
75531896 ATAT
1 ATAT
75531900 GAACATGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 11 0.20
29 43 0.80
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:75531908 original size:29 final size:28
Alignment explanation
Indices: 75531823--75531924 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 28
75531813 TGAATGTGAC
*
75531823 TGGGCCTAACGGGCCATATAA-ATGTGATT
1 TGGGCCTAATGGGCCATATAACA--TGATT
*
75531852 TGGGCCTAGTGGGCCATAT-ACAGGTGATT
1 TGGGCCTAATGGGCCATATAACA--TGATT
75531881 TGGGCCTAATGGGCCATATGAACATGA-T
1 TGGGCCTAATGGGCCATAT-AACATGATT
* *
75531909 TGGGCTTAATGAGCCA
1 TGGGCCTAATGGGCCA
75531925 GATACAGGTA
Statistics
Matches: 64, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
28 16 0.25
29 45 0.70
31 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAACATGATT
Found at i:75531909 original size:58 final size:57
Alignment explanation
Indices: 75531823--75531933 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
75531813 TGAATGTGAC
** * * *
75531823 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAGTGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAACATGA-TTGGGCCTAATGAGCCAGATACAGGTGATT
* * *
75531881 TGGGCCTAATGGGCCATATGAACATGATTGGGCTTAATGAGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAACATGATTGGGCCTAATGAGCCAGATACAGGT
75531934 ATGTGAAATT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAACATGATTGGGCCTAATGAGCCAGATACAGGTGATT
Found at i:75553126 original size:21 final size:21
Alignment explanation
Indices: 75553100--75553141 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75553090 ATACCTGGTA
75553100 AAAGGTATCGATACTTTTTGT
1 AAAGGTATCGATACTTTTTGT
*
75553121 AAAGGTATCGCTACTTTTTGT
1 AAAGGTATCGATACTTTTTGT
75553142 GTAAATCGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (21 bp):
AAAGGTATCGATACTTTTTGT
Found at i:75553354 original size:22 final size:23
Alignment explanation
Indices: 75553326--75553371 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
75553316 ATTTTGTTCA
75553326 ACTTTAACTT-TTAT-TCAAAAAC
1 ACTTTAACTTGTTATAT-AAAAAC
*
75553348 ACTTTAATTTGTTATATAAAAAC
1 ACTTTAACTTGTTATATAAAAAC
75553371 A
1 A
75553372 TATTATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 9 0.43
23 11 0.52
24 1 0.05
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.41
Consensus pattern (23 bp):
ACTTTAACTTGTTATATAAAAAC
Found at i:75558983 original size:39 final size:40
Alignment explanation
Indices: 75558938--75559162 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
75558928 GCTCCTCGTT
* * * *
75558938 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75558978 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
75559017 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75559057 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
75559097 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75559138 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75559163 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75559171 original size:41 final size:41
Alignment explanation
Indices: 75559094--75559171 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75559084 CTTGTATCTC
* * *
75559094 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75559135 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75559172 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75566508 original size:39 final size:40
Alignment explanation
Indices: 75566463--75566687 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
75566453 GCTCCTCGTT
* * * *
75566463 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75566503 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
75566542 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75566582 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
75566622 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75566663 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75566688 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75566696 original size:41 final size:41
Alignment explanation
Indices: 75566619--75566696 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75566609 CTTGTATCTC
* * *
75566619 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75566660 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75566697 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75569823 original size:43 final size:42
Alignment explanation
Indices: 75569735--75569823 Score: 97
Period size: 43 Copynumber: 2.1 Consensus size: 42
75569725 TTTGTGATAT
* * *
75569735 ATGCAGCATCCGAGCTCGATGAGTGGTCCGAGATAATTATGG
1 ATGCAGCATCCGAGCTCGATGAGTAGTCCGAGATAATAATAG
* * * * *
75569777 ATGCAAGCATCTGAGCTCGTTGAGTAGTTCGAGTTCATAATAG
1 ATGC-AGCATCCGAGCTCGATGAGTAGTCCGAGATAATAATAG
75569820 ATGC
1 ATGC
75569824 GATACATGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 4 0.11
43 34 0.89
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (42 bp):
ATGCAGCATCCGAGCTCGATGAGTAGTCCGAGATAATAATAG
Found at i:75580394 original size:43 final size:43
Alignment explanation
Indices: 75580311--75580396 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
75580301 GGTTTTGTGA
* * * ***
75580311 TATGGATGTAAGCATCCAAGCTCGTTGAGTGGTTTGAGTTCAT
1 TATGGATGTAAGCATCCAAGATCATTGAGTAGTCCAAGTTCAT
*
75580354 TATGGATGTAAGCATCCGAGATCATTGAGTAGTCCAAGTTCAT
1 TATGGATGTAAGCATCCAAGATCATTGAGTAGTCCAAGTTCAT
75580397 AGTGCAAGCT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TATGGATGTAAGCATCCAAGATCATTGAGTAGTCCAAGTTCAT
Found at i:75581821 original size:19 final size:19
Alignment explanation
Indices: 75581797--75581835 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75581787 AGTTACACGG
*
75581797 CTAGAGGACACGGACGTGT
1 CTAGAGCACACGGACGTGT
* *
75581816 CTAGAGCACATGGGCGTGT
1 CTAGAGCACACGGACGTGT
75581835 C
1 C
75581836 CCCTGTCTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.36, T:0.18
Consensus pattern (19 bp):
CTAGAGCACACGGACGTGT
Found at i:75585214 original size:17 final size:19
Alignment explanation
Indices: 75585185--75585221 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
75585175 TTAGCATTCT
75585185 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
75585203 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
75585221 T
1 T
75585222 GTGTTTTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:75589240 original size:8 final size:8
Alignment explanation
Indices: 75589227--75589253 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
75589217 TGGGATGGGT
75589227 TATTATGA
1 TATTATGA
75589235 TATTATGA
1 TATTATGA
75589243 TATTATGA
1 TATTATGA
75589251 TAT
1 TAT
75589254 GTAGCTCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (8 bp):
TATTATGA
Found at i:75594848 original size:15 final size:15
Alignment explanation
Indices: 75594828--75594870 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
75594818 TATTGTAATT
*
75594828 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
*
75594843 TGGATTTCTTTATCT
1 TGGATTTCTTTATCA
75594858 TGGATTTCTTTAT
1 TGGATTTCTTTAT
75594871 TCTGGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:75602041 original size:39 final size:39
Alignment explanation
Indices: 75601997--75602161 Score: 249
Period size: 39 Copynumber: 4.2 Consensus size: 39
75601987 TATTAGATTG
75601997 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
*
75602036 AAAATATCCGGACATGAGGTCCGTAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
75602075 AAAATATCTGGACATGAGGTTCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * ** *
75602114 AATATATCCGGACTTGAGGTCCGCAGGCTACGTACTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
75602153 AAAATATCC
1 AAAATATCC
75602162 TGGTTAATGA
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:75602178 original size:78 final size:77
Alignment explanation
Indices: 75601997--75602181 Score: 212
Period size: 78 Copynumber: 2.4 Consensus size: 77
75601987 TATTAGATTG
* * * *
75601997 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGGTCCGTAG
1 AAAATATCTGGACATGA-GCCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAG
* *
75602062 GCTATATGCTGGA
65 GCTACATACTGGA
** * *
75602075 AAAATATCTGGACATGAGGTTCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAG
1 AAAATATCTGGACATGA-GCCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAG
*
75602140 GCTACGTACTGGA
65 GCTACATACTGGA
75602153 AAAATATCCTGGTTA-ATGA-CCCGCAGGCT
1 AAAATAT-CTGG--ACATGAGCCCGCAGGCT
75602182 TACGCTATTG
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
78 84 0.90
79 4 0.04
80 4 0.04
81 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (77 bp):
AAAATATCTGGACATGAGCCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAGG
CTACATACTGGA
Found at i:75609134 original size:24 final size:25
Alignment explanation
Indices: 75609106--75609169 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
75609096 TCAACCGAAT
* * *
75609106 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
75609130 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
75609155 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
75609170 TGAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:75609220 original size:24 final size:24
Alignment explanation
Indices: 75609193--75609242 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
75609183 CATGCATCGA
*
75609193 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
75609217 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
75609241 CA
1 CA
75609243 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:75613757 original size:77 final size:77
Alignment explanation
Indices: 75613652--75613814 Score: 236
Period size: 77 Copynumber: 2.1 Consensus size: 77
75613642 TGAAGAATTT
* * *
75613652 TCTGAATAATTTCATCATTATTCAGTACACAAACTCTACCTCAGAACATCAAACAGTCATCAGGT
1 TCTGAATAAGTTCATAATTATTCAGTACACAAACTCTACCTCAGAACATCAAACAATCATCAGGT
**
75613717 TTGACATGAAAA
66 CCGACATGAAAA
* ** **
75613729 TCTGAATAAGTTCATAATTCTTTGGTACACAAACTCTACCTCAGAACATCAAACAATCATTTGGT
1 TCTGAATAAGTTCATAATTATTCAGTACACAAACTCTACCTCAGAACATCAAACAATCATCAGGT
75613794 CCGACATGAAAA
66 CCGACATGAAAA
75613806 TCTGAATAA
1 TCTGAATAA
75613815 CTAACCAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (77 bp):
TCTGAATAAGTTCATAATTATTCAGTACACAAACTCTACCTCAGAACATCAAACAATCATCAGGT
CCGACATGAAAA
Found at i:75614324 original size:14 final size:14
Alignment explanation
Indices: 75614305--75614334 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75614295 CCATTAAGTG
75614305 ATGCATCGCTATAA
1 ATGCATCGCTATAA
75614319 ATGCATCGCTATAA
1 ATGCATCGCTATAA
75614333 AT
1 AT
75614335 AACAAACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (14 bp):
ATGCATCGCTATAA
Found at i:75618409 original size:17 final size:19
Alignment explanation
Indices: 75618382--75618419 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
75618372 TTAGCATTCT
75618382 TACCAAAAGTTCAT-CTCA
1 TACCAAAAGTTCATACTCA
75618400 TACC-AAAGTTCATACTCA
1 TACCAAAAGTTCATACTCA
75618418 TA
1 TA
75618420 GGTTTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.29
Consensus pattern (19 bp):
TACCAAAAGTTCATACTCA
Found at i:75623669 original size:14 final size:15
Alignment explanation
Indices: 75623650--75623679 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
75623640 ATATTTAACT
75623650 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
75623664 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
75623679 T
1 T
75623680 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:75624415 original size:5 final size:5
Alignment explanation
Indices: 75624405--75624429 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75624395 ATTTTTCTTG
75624405 TAATT TAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT TAATT TAATT
75624430 ATTATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TAATT
Found at i:75641662 original size:9 final size:9
Alignment explanation
Indices: 75641648--75641672 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75641638 TAAGGCAAAT
75641648 AAATTTTTA
1 AAATTTTTA
75641657 AAATTTTTA
1 AAATTTTTA
75641666 AAATTTT
1 AAATTTT
75641673 CAAGTATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
AAATTTTTA
Found at i:75649128 original size:17 final size:18
Alignment explanation
Indices: 75649095--75649130 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
75649085 TTGAGTCAAA
75649095 ATGGACTGTGCGGGCCCT
1 ATGGACTGTGCGGGCCCT
*
75649113 ATGGACTG-GTGGGCCCT
1 ATGGACTGTGCGGGCCCT
75649130 A
1 A
75649131 CACGAGTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.14, C:0.25, G:0.39, T:0.22
Consensus pattern (18 bp):
ATGGACTGTGCGGGCCCT
Found at i:75673133 original size:27 final size:27
Alignment explanation
Indices: 75673103--75673245 Score: 96
Period size: 27 Copynumber: 5.3 Consensus size: 27
75673093 TATGTCGGTC
* *
75673103 ATTTTACACTACAAGAGTATTTTGGTA
1 ATTTTACACTACAAGAGTATTTCGATA
* *
75673130 ATTTTACATTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGAGTATTTCGATA
* * * *
75673157 ATTTTACA-AATCAGGGGTGTTTCGATA
1 ATTTTACACTA-CAAGAGTATTTCGATA
* * *
75673184 ATTTTACA-AATCGAG-GCTATTTTGATA
1 ATTTTACACTA-CAAGAG-TATTTCGATA
* * *
75673211 ATTTTACA-AATCGAGGGTATTTCGATA
1 ATTTTACACTA-CAAGAGTATTTCGATA
75673238 ATTTTACA
1 ATTTTACA
75673246 AACTGGGGGT
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 98 0.97
28 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCGATA
Found at i:75673186 original size:54 final size:53
Alignment explanation
Indices: 75673119--75673321 Score: 223
Period size: 54 Copynumber: 3.8 Consensus size: 53
75673109 CACTACAAGA
* * * *
75673119 GTATTTTGGTAATTTTACATTACAAGGGTATTTCGATAATTTTACAAATCAGGG
1 GTATTTCGATAATTTTACA-AACGAGGGTATTTCGATAATTTTACAAATCAGGG
* * *
75673173 GTGTTTCGATAATTTTACAAATCGAGGCTATTTTGATAATTTTACAAATC-GAGG
1 GTATTTCGATAATTTTACAAA-CGAGGGTATTTCGATAATTTTACAAATCAG-GG
* * *
75673227 GTATTTCGATAATTTTACAAACTGGGGGTATTTCGGTAATTTTACAAACCAGGG
1 GTATTTCGATAATTTTACAAAC-GAGGGTATTTCGATAATTTTACAAATCAGGG
* *
75673281 GTACTTCG-TAATTTTACAAACCGGGGGTATTTC-AGTAATTT
1 GTATTTCGATAATTTTACAAA-CGAGGGTATTTCGA-TAATTT
75673322 CTCTTTATTA
Statistics
Matches: 128, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
53 32 0.25
54 95 0.74
55 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (53 bp):
GTATTTCGATAATTTTACAAACGAGGGTATTTCGATAATTTTACAAATCAGGG
Found at i:75673205 original size:81 final size:81
Alignment explanation
Indices: 75673120--75673274 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
75673110 ACTACAAGAG
* * *
75673120 TATTTTGGTAATTTTAC-ATTACAAGGGTATTTCGATAATTTTACAAA-TCAGGGGTGTTTCGAT
1 TATTTTGATAATTTTACAAAT-CAAGGGTATTTCGATAATTTTACAAACT-AGGGGTATTTCGAT
75673183 AATTTTACAAATCGAGGC
64 AATTTTACAAATCGAGGC
* * *
75673201 TATTTTGATAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAACTGGGGGTATTTCGGTAA
1 TATTTTGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGATAA
75673266 TTTTACAAA
66 TTTTACAAA
75673275 CCAGGGGTAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (81 bp):
TATTTTGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGATAA
TTTTACAAATCGAGGC
Found at i:75673246 original size:27 final size:27
Alignment explanation
Indices: 75673143--75673321 Score: 206
Period size: 27 Copynumber: 6.7 Consensus size: 27
75673133 TTACATTACA
75673143 AGGGTATTTCGATAATTTTACAAATC-
1 AGGGTATTTCGATAATTTTACAAATCG
*
75673169 AGGGGTGTTTCGATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
75673197 AGGCTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
75673224 AGGGTATTTCGATAATTTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
* * *
75673251 GGGGTATTTCGGTAATTTTACAAA-CC
1 AGGGTATTTCGATAATTTTACAAATCG
* *
75673277 AGGGGTACTTCG-TAATTTTACAAACCG
1 A-GGGTATTTCGATAATTTTACAAATCG
*
75673304 GGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
75673322 CTCTTTATTA
Statistics
Matches: 132, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
26 22 0.17
27 109 0.83
28 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:75674831 original size:11 final size:10
Alignment explanation
Indices: 75674804--75674828 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
75674794 TTTATAATAA
75674804 ATTTTGATTT
1 ATTTTGATTT
75674814 ATTTTGATTT
1 ATTTTGATTT
75674824 ATTTT
1 ATTTT
75674829 TGACAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:75676965 original size:46 final size:46
Alignment explanation
Indices: 75676903--75677028 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
75676893 CTCTTGTAGT
*
75676903 CAATGCATATCCCAGACATGTCTTACACTGGCT-TACGTCTCAATGC
1 CAATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCAATGC
* * * *
75676949 TAATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTTAATGC
1 CAATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAATGC
75676995 CAATGCCATGTCCCAGACATGGTCTTACACTGGC
1 CAATG-CATGTCCCAGACAT-GTCTTACACTGGC
75677029 CCACATAATG
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 43 0.61
47 15 0.21
48 12 0.17
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
CAATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAATGC
Found at i:75680100 original size:16 final size:16
Alignment explanation
Indices: 75680079--75680112 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
75680069 TAAGTGCCAT
75680079 ACCCGCAGCTAAACAA
1 ACCCGCAGCTAAACAA
75680095 ACCCGCAGCTAAACAA
1 ACCCGCAGCTAAACAA
75680111 AC
1 AC
75680113 TCAATAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.38, G:0.12, T:0.06
Consensus pattern (16 bp):
ACCCGCAGCTAAACAA
Found at i:75682981 original size:27 final size:27
Alignment explanation
Indices: 75682939--75683019 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
75682929 AGGGCAAAAT
* *
75682939 AGTCATTTTACCCTACAGGGGTATGTC
1 AGTCATTTTACACTACAAGGGTATGTC
* * *
75682966 ATTCATTTTACACTACAAGGGTGTTTC
1 AGTCATTTTACACTACAAGGGTATGTC
* *
75682993 GGTAATTTTACACTACAAGGGTATGTC
1 AGTCATTTTACACTACAAGGGTATGTC
75683020 GATAATTATG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACACTACAAGGGTATGTC
Found at i:75683060 original size:27 final size:27
Alignment explanation
Indices: 75682983--75683215 Score: 190
Period size: 27 Copynumber: 8.7 Consensus size: 27
75682973 TTACACTACA
* * * *
75682983 AGGGTGTTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
* * *
75683010 AGGGTATGTCGATAATTATGCAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
75683037 GGGGTGTTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
75683064 AGGGTATTTC-AGTAATTTTACAAAT-T
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
75683090 ATGGGTATTTCGGTAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
* * * *
75683118 AGGGTGTTT-TAGTAATTTTAAAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
75683145 AGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
75683172 AGGGTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
75683198 AGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTT
75683216 CTCTTTATTA
Statistics
Matches: 164, Mismatches: 33, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
26 22 0.13
27 139 0.85
28 3 0.02
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:75683068 original size:54 final size:53
Alignment explanation
Indices: 75682981--75683215 Score: 233
Period size: 54 Copynumber: 4.4 Consensus size: 53
75682971 TTTTACACTA
* * * *
75682981 CAAGGGTGTTTCGGTAATTTTAC-ACTACAAGGGTATGTC-GATAATTATGCAAAT
1 CAAGGGTGTTTCGGTAATTTTACAAAT-CGAGGGTAT-TCAG-TAATTTTACAAAT
** * *
75683035 CGGGGGTGTTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTGTTTCGGTAATTTTACAAATCGAGGGTA-TTCAGTAATTTTACAAAT
* * * * * *
75683089 TATGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTTAGTAATTTTAAAAAT
1 CAAGGGTGTTTCGGTAATTTTACAAATCGAGGGT-ATTCAGTAATTTTACAAAT
* *
75683143 CAAGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTGTTTCGGTAATTTTACAAATCGAGGGTA-TTCAGTAATTTTACAAAT
* *
75683196 CGAGGGTATTTCGGTAATTT
1 CAAGGGTGTTTCGGTAATTT
75683216 CTCTTTATTA
Statistics
Matches: 149, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
53 21 0.14
54 124 0.83
55 4 0.03
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (53 bp):
CAAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTCAGTAATTTTACAAAT
Found at i:75683068 original size:81 final size:81
Alignment explanation
Indices: 75682981--75683215 Score: 221
Period size: 81 Copynumber: 2.9 Consensus size: 81
75682971 TTTTACACTA
* * *
75682981 CAAGGGTGTTTCGGTAATTTTAC-ACTACAAGGGTATGTCGATAATTATGCAAATCGGGGGTGTT
1 CAAGGGTGTTTCGGTAATTTTACAAAT-CAAGGGTATGTCGATAATTATACAAATCGAGGGTGTT
*
75683045 TCGA-TAATTTTACAAAT
65 T-GAGTAATTTTAAAAAT
** * * * * * * *
75683062 TGAGGGTATTTCAGTAATTTTACAAATTATGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTT
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATGTCGATAATTATACAAATCGAGGGTGTTT
*
75683127 TAGTAATTTTAAAAAT
66 GAGTAATTTTAAAAAT
** * *
75683143 CAAGGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTC-AGTAATT-T-CACAATCGAGGGTAT
1 CAAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATGTCGA-TAATTATACA-AATCGAGGGTGT
75683205 TTCG-GTAATTT
64 TT-GAGTAATTT
75683216 CTCTTTATTA
Statistics
Matches: 126, Mismatches: 23, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
79 2 0.02
80 22 0.17
81 100 0.79
82 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (81 bp):
CAAGGGTGTTTCGGTAATTTTACAAATCAAGGGTATGTCGATAATTATACAAATCGAGGGTGTTT
GAGTAATTTTAAAAAT
Found at i:75690784 original size:47 final size:47
Alignment explanation
Indices: 75690639--75690816 Score: 207
Period size: 47 Copynumber: 3.8 Consensus size: 47
75690629 TAGCCCAACC
* *
75690639 ATGGTCTTACATGG-ATCACATATCACACTGATGCCATATCCCAGAT
1 ATGGTCTTATATGGAAGCACATATCACACTGATGCCATATCCCAGAT
* * * * *
75690685 ATGGTATTACATAGAAGCACGTATCACACGGATGCCATATCCCAGAT
1 ATGGTCTTATATGGAAGCACATATCACACTGATGCCATATCCCAGAT
* * * *
75690732 ATGGTCTTATACGGAAGCTCATAACACACTGATTCCATATCCCAGAT
1 ATGGTCTTATATGGAAGCACATATCACACTGATGCCATATCCCAGAT
* * *
75690779 ATGGTCTTATATGGAAATCGCATATCACA-TGTTGCCAT
1 ATGGTCTTATATGG-AAGCACATATCACACTGATGCCAT
75690817 GGTCCAACCA
Statistics
Matches: 110, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
46 12 0.11
47 87 0.79
48 11 0.10
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGGTCTTATATGGAAGCACATATCACACTGATGCCATATCCCAGAT
Found at i:75703564 original size:51 final size:51
Alignment explanation
Indices: 75703505--75703611 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
75703495 AAAATCTTTA
*
75703505 ATGAGTCTATTCTCTAGAAAGATAGAGAGAGCATTATTCGAATTTTGTACT
1 ATGAGTCTATTCTCCAGAAAGATAGAGAGAGCATTATTCGAATTTTGTACT
*
75703556 ATGAGTCTATTCTCCAGTAAGATAGAGAGAGCATTATTCGAATTTTGTACT
1 ATGAGTCTATTCTCCAGAAAGATAGAGAGAGCATTATTCGAATTTTGTACT
75703607 ATGAG
1 ATGAG
75703612 AAAAATAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (51 bp):
ATGAGTCTATTCTCCAGAAAGATAGAGAGAGCATTATTCGAATTTTGTACT
Found at i:75719241 original size:13 final size:13
Alignment explanation
Indices: 75719225--75719249 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75719215 TTAAATCAGT
75719225 TAATTAGTTTAAA
1 TAATTAGTTTAAA
75719238 TAATTAGTTTAA
1 TAATTAGTTTAA
75719250 TAAAAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:75721095 original size:42 final size:42
Alignment explanation
Indices: 75720978--75721137 Score: 128
Period size: 42 Copynumber: 3.8 Consensus size: 42
75720968 GAAAAGCTCG
* * * * *
75720978 TACAATGCCAACGTCCCAGACGTGGTCTTACATATAATCGAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACAAAATCTAA
** * * * *
75721020 TATTGATACCACTGTCCC-GACAGGGTCTAACACAAAAT-TATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACAAAATCTA-A
75721062 TACAATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACA-AAATCT-AA
** *
75721106 -ATCGTTGCCAATGTCCCAGACGTGGTCTTACA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACA
75721138 TGAAATCACA
Statistics
Matches: 91, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
41 12 0.13
42 34 0.37
43 15 0.16
44 29 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACAAAATCTAA
Found at i:75721164 original size:44 final size:43
Alignment explanation
Indices: 75721066--75721152 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 43
75721056 ATTATATACA
*
75721066 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTA-ACATAAATCACAAATCG
* *
75721110 TTGCCAATGTCCCAGACGTGGTCTT-ACATGAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTAACAT-AAATCACAAATCG
75721153 GAATCCTATG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
42 4 0.10
43 12 0.31
44 23 0.59
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTAACATAAATCACAAATCG
Found at i:75730365 original size:104 final size:104
Alignment explanation
Indices: 75730185--75730408 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
75730175 TGTATATAAA
** * *
75730185 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
75730250 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
75730289 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
75730353 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
75730393 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
75730409 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:75730460 original size:71 final size:72
Alignment explanation
Indices: 75730327--75730478 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
75730317 TCATTGGTGG
* *
75730327 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75730392 GAGGGGT
66 GAGGGGT
***
75730399 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75730463 GAGGGGT
66 GAGGGGT
75730470 TGCTAAGTG
1 TGCTAAGTG
75730479 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:75734187 original size:20 final size:20
Alignment explanation
Indices: 75734162--75734201 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
75734152 TATATAAATT
75734162 TATTTAGAGATTTAATTAAA
1 TATTTAGAGATTTAATTAAA
*
75734182 TATTTATAGATTTAATTAAA
1 TATTTAGAGATTTAATTAAA
75734202 ATAGTCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (20 bp):
TATTTAGAGATTTAATTAAA
Found at i:75735691 original size:26 final size:26
Alignment explanation
Indices: 75735662--75735725 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
75735652 TGCAACTTAC
* *
75735662 CTGGTGAACCCAGTTCACCACACAAA
1 CTGGCGAACCCAGTTCACCAAACAAA
* * *
75735688 CTGGCGAACCTTAGTTTACCAAACAGA
1 CTGGCGAACC-CAGTTCACCAAACAAA
75735715 CTGGCGAACCC
1 CTGGCGAACCC
75735726 CTAGCTCGCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (26 bp):
CTGGCGAACCCAGTTCACCAAACAAA
Found at i:75735717 original size:27 final size:27
Alignment explanation
Indices: 75735673--75735724 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
75735663 TGGTGAACCC
*
75735673 AGTTCACCACACAAACTGGCGAACCTT
1 AGTTCACCAAACAAACTGGCGAACCTT
* *
75735700 AGTTTACCAAACAGACTGGCGAACC
1 AGTTCACCAAACAAACTGGCGAACC
75735725 CCTAGCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.31, G:0.17, T:0.17
Consensus pattern (27 bp):
AGTTCACCAAACAAACTGGCGAACCTT
Found at i:75736959 original size:17 final size:17
Alignment explanation
Indices: 75736937--75736971 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
75736927 ATGTTTATGT
75736937 ATACTTGAGTTATTAAA
1 ATACTTGAGTTATTAAA
75736954 ATACTTGAGTTATTAAA
1 ATACTTGAGTTATTAAA
75736971 A
1 A
75736972 CTAAGTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (17 bp):
ATACTTGAGTTATTAAA
Found at i:75741035 original size:45 final size:45
Alignment explanation
Indices: 75740919--75741140 Score: 231
Period size: 45 Copynumber: 5.0 Consensus size: 45
75740909 ATGTCATCTC
* *
75740919 ATATCGATGCCACTGTCCCAGACAG-GGTCTTACACGAATA-A-A-
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACACGAAAACACAT
* * * * * * *
75740961 ATA-CGATGTCGATGTCCTAGACATAGTCTTACACGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
* *
75741005 ATATCGATGCCAATGTCCCAGATGTGGTCTTACAGGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
* *
75741050 ATATTGATGCCAGTGTCCCAGAC-TGGTCTTACACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
* * * * *
75741094 ATATCAATGTCAACGTCCTAGACGTGGTCTTACAAGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
75741139 AT
1 AT
75741141 TGGAATCCTA
Statistics
Matches: 145, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
41 26 0.18
42 4 0.03
43 1 0.01
44 40 0.28
45 74 0.51
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAAACACAT
Found at i:75742858 original size:50 final size:50
Alignment explanation
Indices: 75742740--75742917 Score: 184
Period size: 50 Copynumber: 3.6 Consensus size: 50
75742730 CTAGTACGCA
* **
75742740 TAGTAGCCTGCACTTAGTACTACACATGCG-CCCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCCAACAGTCTAATACACG
* *
75742789 TAGTAGCCTGCACTTAGTACTGCACATGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC-CAACAGTCTAATACACG
* * *** * *
75742839 TAGTAGCCTGCACTTAGTACTACACACGTGA-TC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCCAACAG---TCTAATACACG
75742890 TAGTAGCCTGCACTTAGTACTACACATG
1 TAGTAGCCTGCACTTAGTACTACACATG
75742918 CGAACTCACA
Statistics
Matches: 108, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 28 0.26
50 40 0.37
51 37 0.34
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCCAACAGTCTAATACACG
Found at i:75742916 original size:101 final size:99
Alignment explanation
Indices: 75742740--75742926 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 99
75742730 CTAGTACGCA
* * * *
75742740 TAGTAGCCTGCACTTAGTACTACACATGCGCCCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
* * *
75742805 GTACTGCACATGTGACCTCACCATCTAATACACG
66 GTACTACACATGCGAACTCACCATCTAATACACG
* * *
75742839 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
75742903 TTAGTACTACACATGCGAACTCAC
63 TTAGTACTACACATGCGAACTCAC
75742927 AATAGATCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
98 4 0.05
99 29 0.39
101 42 0.56
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGAACTCACCATCTAATACACG
Found at i:75750615 original size:3 final size:3
Alignment explanation
Indices: 75750607--75750650 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
75750597 TGAGGATCCC
75750607 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
75750651 TCCCATAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:75762566 original size:25 final size:25
Alignment explanation
Indices: 75762532--75762582 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75762522 AAAATTGGGG
75762532 TTTGAAAAGGGTTTTTCTAAAATTT
1 TTTGAAAAGGGTTTTTCTAAAATTT
75762557 TTTGAAAAGGGTTTTTCTAAAATTT
1 TTTGAAAAGGGTTTTTCTAAAATTT
75762582 T
1 T
75762583 GTTTTGAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.16, T:0.49
Consensus pattern (25 bp):
TTTGAAAAGGGTTTTTCTAAAATTT
Found at i:75764316 original size:27 final size:27
Alignment explanation
Indices: 75764286--75764463 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75764276 ATATTGAGTC
* * * *
75764286 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
75764313 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75764340 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
75764368 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
75764395 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
75764422 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
75764449 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75764464 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:75764425 original size:82 final size:81
Alignment explanation
Indices: 75764307--75764462 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75764297 TGCTATATAA
* *
75764307 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
75764372 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
75764389 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
75764453 CACTTAGTGC
65 CACTTAGTGC
75764463 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75772476 original size:42 final size:43
Alignment explanation
Indices: 75772373--75772520 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 43
75772363 TGTGACATCG
* * * *
75772373 TGTAAGACCATGTCTGGGACACAGGCCTCG--ATTGAGATTTACG
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACA
* * * ** * *
75772416 TATAAGACCATGTTTGGGACATCGGTATCG-TATCTG-ATTTCA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGAATTACA
*
75772458 TGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
75772501 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
75772521 GTCATCATTG
Statistics
Matches: 83, Mismatches: 17, Indels: 10
0.75 0.15 0.09
Matches are distributed among these distances:
42 28 0.34
43 50 0.60
44 3 0.04
45 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
Found at i:75778253 original size:108 final size:108
Alignment explanation
Indices: 75778057--75778258 Score: 228
Period size: 108 Copynumber: 1.9 Consensus size: 108
75778047 CATGGACTTA
* * *
75778057 TACATATCTTCATGTCATGATCTACCAGTTCGATTTACATATCATCAAAGGCGTCACCAAGAATG
1 TACATACCTTCATGTCATGATCTACCAGTTCGATTTACATATCACCAAAGGCATCACCAAGAATG
* *
75778122 TTCTTATCAACATATCATACCATGGGTCTTTGCCACATAGACT
66 TTCTTATCAACATATAATACCATGAGTCTTTGCCACATAGACT
* * * * * **
75778165 TACATACCTTCATGTCATGATCTATCAGTTC-AGTTTTCATCTTACCGAAGGCATCACCTTGAAT
1 TACATACCTTCATGTCATGATCTACCAGTTCGA-TTTACATATCACCAAAGGCATCACCAAGAAT
** * *
75778229 GTAT-TTATTGACTTATAATGCCATGAGTCT
65 GT-TCTTATCAACATATAATACCATGAGTCT
75778259 CTATCGCATG
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
107 1 0.01
108 74 0.97
109 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (108 bp):
TACATACCTTCATGTCATGATCTACCAGTTCGATTTACATATCACCAAAGGCATCACCAAGAATG
TTCTTATCAACATATAATACCATGAGTCTTTGCCACATAGACT
Found at i:75778522 original size:27 final size:27
Alignment explanation
Indices: 75778484--75778539 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
75778474 ATTGCGCATA
75778484 TAGCATCTTTACTATACGTAATACACT
1 TAGCATCTTTACTATACGTAATACACT
*
75778511 TAGCATCTTTACTATACTTAATACACT
1 TAGCATCTTTACTATACGTAATACACT
75778538 TA
1 TA
75778540 CCCTTTATAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (27 bp):
TAGCATCTTTACTATACGTAATACACT
Found at i:75783536 original size:27 final size:27
Alignment explanation
Indices: 75783498--75783763 Score: 236
Period size: 27 Copynumber: 9.9 Consensus size: 27
75783488 AAGACCTCAG
75783498 TTTGTAAAATTACCGAAATACCCCCGA
1 TTTGTAAAATTACCGAAATACCCCCGA
* *
75783525 TTTGTAAAATTACTGAAATACTCCC-A
1 TTTGTAAAATTACCGAAATACCCCCGA
* **
75783551 GTTTGTAAAATTACAGAAATACCCTAGA
1 -TTTGTAAAATTACCGAAATACCCCCGA
* * **
75783579 TTTGTGAAATTATCGAAATACCCCTAA
1 TTTGTAAAATTACCGAAATACCCCCGA
* * *
75783606 TTTGTAAAATTACTGAAATATCCCCAA
1 TTTGTAAAATTACCGAAATACCCCCGA
* * * *
75783633 TTTGTAAAATTATCAAAATA-CCTCAA
1 TTTGTAAAATTACCGAAATACCCCCGA
*
75783659 TTTGTAAAATTACTGAAATACCCCCGGA
1 TTTGTAAAATTACCGAAATACCCCC-GA
**
75783687 -TTGTAAAATTACTAAAATACCCCC-A
1 TTTGTAAAATTACCGAAATACCCCCGA
* * **
75783712 GTTTGTAAAATTACCAAAATATCCTTG-
1 -TTTGTAAAATTACCGAAATACCCCCGA
* *
75783739 TAGTGTAAATTTACCGAAATACCCC
1 T-TTGTAAAATTACCGAAATACCCC
75783764 TATAGGGTAA
Statistics
Matches: 195, Mismatches: 36, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 24 0.12
27 168 0.86
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTTGTAAAATTACCGAAATACCCCCGA
Found at i:75783637 original size:81 final size:77
Alignment explanation
Indices: 75783491--75783732 Score: 308
Period size: 80 Copynumber: 3.0 Consensus size: 77
75783481 GGTCGTTAAG
*
75783491 ACCTCAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACTGAAATACTCCCAGTTTG
1 ACCTCAATTTGTAAAATTA-CGAAATACCCCCGATTTGTAAAATTACTGAAATAC-CCCAGTTTG
75783556 TAAAATTACAGAAAT
64 TAAAATTACA-AAAT
* ** *
75783571 ACC-CTAGATTTGTGAAATTATCGAAATACCCCTAATTTGTAAAATTACTGAAATATCCCCAATT
1 ACCTC-A-ATTTGTAAAATTA-CGAAATACCCCCGATTTGTAAAATTACTGAAATA-CCCCAGTT
75783635 TGTAAAATTATCAAAAT
62 TGTAAAATTA-CAAAAT
*
75783652 ACCTCAATTTGTAAAATTACTGAAATACCCCCGGA-TTGTAAAATTACTAAAATACCCCCAGTTT
1 ACCTCAATTTGTAAAATTAC-GAAATACCCCC-GATTTGTAAAATTACTGAAATA-CCCCAGTTT
75783716 GTAAAATTACCAAAAT
63 GTAAAATTA-CAAAAT
75783732 A
1 A
75783733 TCCTTGTAGT
Statistics
Matches: 142, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.01
80 68 0.48
81 68 0.48
82 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (77 bp):
ACCTCAATTTGTAAAATTACGAAATACCCCCGATTTGTAAAATTACTGAAATACCCCAGTTTGTA
AAATTACAAAAT
Found at i:75783747 original size:54 final size:54
Alignment explanation
Indices: 75783495--75783732 Score: 277
Period size: 54 Copynumber: 4.4 Consensus size: 54
75783485 GTTAAGACCT
*
75783495 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACTGAAATACTCC
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACTGAAATACCCC
* ** *
75783549 CAGTTTGTAAAATTACAGAAATACCCTAGATTTGTGAAATTA-TCGAAATACCCC
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACT-GAAATACCCC
* * * * * * *
75783603 TAATTTGTAAAATTACTGAAATATCCCCAATTTGTAAAATTA-TCAAAATA-CCT
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACT-GAAATACCCC
* * *
75783656 CAATTTGTAAAATTACTGAAATACCCCCGGA-TTGTAAAATTACTAAAATACCCC
1 CAGTTTGTAAAATTACCGAAATACCCCC-GATTTGTAAAATTACTGAAATACCCC
*
75783710 CAGTTTGTAAAATTACCAAAATA
1 CAGTTTGTAAAATTACCGAAATA
75783733 TCCTTGTAGT
Statistics
Matches: 158, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
53 46 0.29
54 112 0.71
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (54 bp):
CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACTGAAATACCCC
Found at i:75783759 original size:54 final size:54
Alignment explanation
Indices: 75783495--75783763 Score: 274
Period size: 54 Copynumber: 5.0 Consensus size: 54
75783485 GTTAAGACCT
* *
75783495 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACTGAAATACTCC
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGAAATACCCC
* ** * *
75783549 CAGTTTGTAAAATTACAGAAATACCCTAGATTTGTGAAATTATCGAAATACCCC
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGAAATACCCC
* * * * * * * *
75783603 TAATTTGTAAAATTACTGAAATATCCCCAATTTGTAAAATTATCAAAATA-CCT
1 CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGAAATACCCC
* * **
75783656 CAATTTGTAAAATTACTGAAATACCCCCGGA-TTGTAAAATTACTAAAATACCCC
1 CAGTTTGTAAAATTACCGAAATACCCCC-GATTTGTAAAATTACCGAAATACCCC
* * ** * *
75783710 CAGTTTGTAAAATTACCAAAATATCCTTG-TAGTGTAAATTTACCGAAATACCCC
1 CAGTTTGTAAAATTACCGAAATACCCCCGAT-TTGTAAAATTACCGAAATACCCC
75783764 TATAGGGTAA
Statistics
Matches: 178, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
53 46 0.26
54 132 0.74
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
CAGTTTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTACCGAAATACCCC
Found at i:75783773 original size:27 final size:27
Alignment explanation
Indices: 75783689--75783776 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
75783679 CCCCCGGATT
* * **
75783689 GTAAAATTACTAAAATACCCCCAGT-TT
1 GTAAAATTACCAAAATACCCCTA-TAGG
* * * *
75783716 GTAAAATTACCAAAATATCCTTGTAGT
1 GTAAAATTACCAAAATACCCCTATAGG
* *
75783743 GTAAATTTACCGAAATACCCCTATAGG
1 GTAAAATTACCAAAATACCCCTATAGG
75783770 GTAAAAT
1 GTAAAAT
75783777 GACTATTTTA
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
26 1 0.02
27 46 0.98
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTATAGG
Found at i:75784162 original size:22 final size:22
Alignment explanation
Indices: 75784137--75784186 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
75784127 TATGGCGCTA
75784137 TGCCAACCTAAAAATGGCTTTG
1 TGCCAACCTAAAAATGGCTTTG
* * * **
75784159 TGCCATCTTGACTATGGCTTTG
1 TGCCAACCTAAAAATGGCTTTG
75784181 TGCCAA
1 TGCCAA
75784187 ATGTAATTAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (22 bp):
TGCCAACCTAAAAATGGCTTTG
Found at i:75784609 original size:31 final size:33
Alignment explanation
Indices: 75784565--75784629 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
75784555 TGTCACTGTA
* * *
75784565 TTGGGCTTAGGCCCACTT-ATTTTGTTATTGGT
1 TTGGGCTTAGGCCCAATTGATTCTGTTATAGGT
75784597 TTGGGC-TAGGCCCAATTGATTCTGTTATAGGT
1 TTGGGCTTAGGCCCAATTGATTCTGTTATAGGT
75784629 T
1 T
75784630 GTGATCCAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 10 0.34
32 19 0.66
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.43
Consensus pattern (33 bp):
TTGGGCTTAGGCCCAATTGATTCTGTTATAGGT
Found at i:75786473 original size:19 final size:19
Alignment explanation
Indices: 75786449--75786489 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
75786439 GTGGCATAAG
75786449 TCAGTATATCCTCTAGTTT
1 TCAGTATATCCTCTAGTTT
75786468 TCAGTATATCCTCTAGTTT
1 TCAGTATATCCTCTAGTTT
75786487 TCA
1 TCA
75786490 CACTGCATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (19 bp):
TCAGTATATCCTCTAGTTT
Found at i:75800130 original size:19 final size:19
Alignment explanation
Indices: 75800106--75800144 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
75800096 AGAGCAATGA
75800106 ATACTCGATTGTTATTGTC
1 ATACTCGATTGTTATTGTC
75800125 ATACTCGATTGTTATTGTC
1 ATACTCGATTGTTATTGTC
75800144 A
1 A
75800145 GATGATGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (19 bp):
ATACTCGATTGTTATTGTC
Found at i:75802692 original size:40 final size:40
Alignment explanation
Indices: 75802597--75802773 Score: 218
Period size: 40 Copynumber: 4.5 Consensus size: 40
75802587 TGGATGATAA
* * *
75802597 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
75802637 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75802676 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
75802716 CCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
75802756 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75802774 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 49 0.40
40 72 0.59
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75810759 original size:39 final size:40
Alignment explanation
Indices: 75810655--75810900 Score: 288
Period size: 40 Copynumber: 6.5 Consensus size: 40
75810645 TGGATGATAA
* * *
75810655 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
75810695 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75810735 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
75810774 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC--TAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
75810812 CC-GG-T-A-T-CCGAAGGCA-TTG-G-TAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
75810844 CCGGGCTATGTCCCGAAGGCATTCGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
75810883 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
75810901 TACTTGGCTT
Statistics
Matches: 184, Mismatches: 9, Indels: 28
0.83 0.04 0.13
Matches are distributed among these distances:
30 6 0.03
31 1 0.01
32 8 0.04
33 11 0.06
34 2 0.01
35 1 0.01
36 2 0.01
37 11 0.06
38 22 0.12
39 51 0.28
40 69 0.38
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:75810787 original size:79 final size:76
Alignment explanation
Indices: 75810655--75810866 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 76
75810645 TGGATGATAA
*
75810655 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGT-CCGAAGGCATTTG-GCTAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
75810719 GTGCGAGTTACTATAT
63 GTGCGAGTTAC--TAT
*
75810735 CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCGAAGGCATTTG-GCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
75810800 GCGAGTTACTAT
65 GCGAGTTACTAT
*
75810812 CC-GG-T-A-TCCGAAGGCA-TTGG-TAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCGAAGGCATTTGGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATT
75810867 CGAGCAGTAG
Statistics
Matches: 126, Mismatches: 5, Indels: 12
0.88 0.03 0.08
Matches are distributed among these distances:
70 33 0.26
71 1 0.01
72 3 0.02
73 10 0.08
74 1 0.01
75 1 0.01
76 2 0.02
77 5 0.04
78 1 0.01
79 58 0.46
80 11 0.09
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (76 bp):
CCGGGCTAAGTCCGAAGGCATTTGGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAT
Found at i:75818641 original size:40 final size:40
Alignment explanation
Indices: 75818557--75818740 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
75818547 TTGAATGCTG
* * * *
75818557 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
75818596 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
75818637 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
75818677 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
*
75818717 TCCGGGTTAAGTCCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75818741 GAATGAGTTA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 110 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:75818694 original size:80 final size:81
Alignment explanation
Indices: 75818557--75818737 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
75818547 TTGAATGCTG
* * *
75818557 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
75818621 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
75818637 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
75818698 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
*
75818717 TCCGGGTTAAGTCCTGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
75818738 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:75827261 original size:37 final size:37
Alignment explanation
Indices: 75827143--75827483 Score: 495
Period size: 37 Copynumber: 9.1 Consensus size: 37
75827133 TTAAGCTTGA
* *
75827143 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGG
*
75827181 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGAT-AAACCCGG
*
75827219 ATATAATACCAGCACGAAGCCTTCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
*
75827256 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGAT-AAACCCGG
75827294 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* * *
75827331 ACATAATACCAGCACAAAG-CTGCAGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* *
75827367 ATATAATACCAGCACTAAGCTTGCGGGATAAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* **
75827404 ATATAATACCAGCACTAAGCCTGCGGGATAAACCTTG
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
* * *
75827441 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGG
75827479 ATATA
1 ATATA
75827484 CATCAAATAT
Statistics
Matches: 276, Mismatches: 23, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
36 33 0.12
37 136 0.49
38 107 0.39
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.17
Consensus pattern (37 bp):
ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGG
Found at i:75827275 original size:75 final size:74
Alignment explanation
Indices: 75827143--75827483 Score: 513
Period size: 75 Copynumber: 4.6 Consensus size: 74
75827133 TTAAGCTTGA
* *
75827143 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTGCGGG
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGGATATAATACCAGCACGAAGCCTGCGGG
75827208 ATAAAACCTGG
65 AT-AAACCTGG
*
75827219 ATATAATACCAGCACGAAGCCTTCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
75827284 TAAAACCTGG
66 T-AAACCTGG
* * *
75827294 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGGACATAATACCAGCACAAAG-CTGCAGGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
*
75827358 TAAACCCGG
66 TAAACCTGG
* * *
75827367 ATATAATACCAGCACTAAGCTTGCGGGATAAACCCGGATATAATACCAGCACTAAGCCTGCGGGA
1 ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
*
75827432 TAAACCTTG
66 TAAACCTGG
* * *
75827441 ATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGAATATA
1 ATATAATACCAGCACGAAGCCTGCGGGA-TAAACCCGGATATA
75827484 CATCAAATAT
Statistics
Matches: 244, Mismatches: 19, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
73 59 0.24
74 48 0.20
75 111 0.45
76 26 0.11
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.17
Consensus pattern (74 bp):
ATATAATACCAGCACGAAGCCTGCGGGATAAACCCGGATATAATACCAGCACGAAGCCTGCGGGA
TAAACCTGG
Found at i:75829727 original size:23 final size:23
Alignment explanation
Indices: 75829651--75829740 Score: 74
Period size: 23 Copynumber: 3.7 Consensus size: 23
75829641 GACTCACCAC
* *
75829651 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCATATGAGCTTACC-AT-T-TT
* * * *
75829677 AGCTCGTAAGAGGTTACTATTTTT
1 AGCTCATATGAGCTTACCA-TTTT
75829701 AGCTCAT-TGGAGCTTACCATTTT
1 AGCTCATAT-GAGCTTACCATTTT
75829724 AGCTCATATGAGCTTAC
1 AGCTCATATGAGCTTAC
75829741 TGCTCAGCTC
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
23 19 0.36
24 16 0.30
25 2 0.04
26 16 0.30
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (23 bp):
AGCTCATATGAGCTTACCATTTT
Found at i:75829759 original size:22 final size:22
Alignment explanation
Indices: 75829734--75829784 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
75829724 AGCTCATATG
75829734 AGCTTACTGCTCAGCTCAATAA
1 AGCTTACTGCTCAGCTCAATAA
* * * *
75829756 AGCTTACTGTTTAGCTCGATAG
1 AGCTTACTGCTCAGCTCAATAA
75829778 AGCTTAC
1 AGCTTAC
75829785 CGTTACAACT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (22 bp):
AGCTTACTGCTCAGCTCAATAA
Found at i:75829805 original size:45 final size:44
Alignment explanation
Indices: 75829703--75829811 Score: 114
Period size: 45 Copynumber: 2.4 Consensus size: 44
75829693 CTATTTTTAG
* * *
75829703 CTCATTGGAGCTTACCAT-TTTAGCTCATATGAGCTTACTGCTCAG
1 CTCATTAGAGCTTA-C-TGTTTAGCTCATATGAGCTTACCGCTCAA
* * *
75829748 CTCAATAAAGCTTACTGTTTAGCTCGATA-GAGCTTACCGTTACAA
1 CTCATTAGAGCTTACTGTTTAGCTC-ATATGAGCTTACCGCT-CAA
75829793 CTCATTAGAGCTTACTGTT
1 CTCATTAGAGCTTACTGTT
75829812 CATTAGCTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
43 1 0.02
44 19 0.36
45 33 0.62
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (44 bp):
CTCATTAGAGCTTACTGTTTAGCTCATATGAGCTTACCGCTCAA
Found at i:75842296 original size:44 final size:43
Alignment explanation
Indices: 75842186--75842301 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 43
75842176 AGCTCGTACA
*
75842186 ATGCCAACGTCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCTCAGACGTGGTCTTACACGTAATCAAATATCG
* *
75842229 ATGCC-ACTGTCTTAGACAG-GGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAAC-GTCTCAGAC-GTGGTCTTACACGT-AATCA-AATATCG
* *
75842273 ATGCCAACGTCCCAGACGTGGTCTCACAC
1 ATGCCAACGTCTCAGACGTGGTCTTACAC
75842302 AAAAACACAT
Statistics
Matches: 61, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.03
43 25 0.41
44 30 0.49
45 4 0.07
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCTCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:75844300 original size:27 final size:27
Alignment explanation
Indices: 75844269--75844719 Score: 494
Period size: 27 Copynumber: 16.7 Consensus size: 27
75844259 TTAGTTTACC
*
75844269 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
75844296 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
75844323 AAATCACCAAAATA-CCTCTAGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
* **
75844350 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
75844377 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
75844404 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * **
75844431 AAATCACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
75844458 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
75844485 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
75844512 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
75844539 AAATTA-CAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
75844565 AAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
* * *
75844592 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
75844619 AAATTACCAAAATACCCTTGATTTATG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * ***
75844646 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** **
75844673 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
75844700 AAACTACCAAAATACCCTTG
1 AAATTACCAAAATACCCTTG
75844720 ATCTACAGAA
Statistics
Matches: 357, Mismatches: 62, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
26 25 0.07
27 329 0.92
28 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:75844347 original size:54 final size:54
Alignment explanation
Indices: 75844269--75844716 Score: 569
Period size: 54 Copynumber: 8.3 Consensus size: 54
75844259 TTAGTTTACC
* *
75844269 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
75844323 AAATCACCAAAATACCTCTAGTTTGTAAAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
75844377 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
75844431 AAATCACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
75844485 AAATTACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
75844539 AAATTA-CAAAATACCCCTAATTTGTAAAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACC-CTTGGTTTATA
* * *
75844592 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * ** *** ** *
75844646 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
75844700 AAACTACCAAAATACCC
1 AAATTACCAAAATACCC
75844717 TTGATCTACA
Statistics
Matches: 340, Mismatches: 49, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
53 53 0.16
54 285 0.84
55 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:75844675 original size:81 final size:80
Alignment explanation
Indices: 75844269--75844797 Score: 490
Period size: 81 Copynumber: 6.5 Consensus size: 80
75844259 TTAGTTTACC
* * *
75844269 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
75844334 ATACCTCT-AGTTTGTA
66 ATACC-CTGA-TTTGTA
** ** * * *
75844350 AAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
* *
75844415 ATACCCTTGGTTTATA
66 ATACCC-TGATTTGTA
* ** *
75844431 AAATCACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTT-AGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTATAAAATTACCAA
*
75844495 AATACCCTTAGTTTGTA
65 AATACCCTGA-TTTGTA
* * * * * *
75844512 AAATTACTAAAATACCCTTGGTTTATAAAATTA-CAAAATACCCCTAATTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
*
75844576 ATACCACTGGTTTGTA
66 ATACC-CTGATTTGTA
* * * **
75844592 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATGAAATTACTGAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
**
75844657 ATACCCTCGACCTGTA
66 ATACCCT-GATTTGTA
*** * ** * * * * **
75844673 AAATTATTGAAATACCCTTGACTTGTAAAACTACCAAAATACCCTTGATCTACAGAATTACCATT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
* **
75844738 TTACCCTCGATTTACA
66 ATACCCT-GATTTGTA
* * ** *
75844754 AAATTACCGAAATACCTCT-GTAGGGTAGAATTACCAAAATACCC
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCC
75844798 CTGTAGTAGA
Statistics
Matches: 360, Mismatches: 79, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
80 69 0.19
81 291 0.81
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
ATACCCTGATTTGTA
Found at i:75844785 original size:27 final size:27
Alignment explanation
Indices: 75844755--75844920 Score: 205
Period size: 27 Copynumber: 6.3 Consensus size: 27
75844745 CGATTTACAA
*
75844755 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75844782 AATTACCAAAATACCCCTGTA--GTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75844807 AATTATC-ACAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
75844834 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
75844861 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
75844888 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
75844914 AATTACC
1 AATTACC
75844921 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.01
25 22 0.18
26 16 0.13
27 81 0.67
28 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:75844797 original size:54 final size:52
Alignment explanation
Indices: 75844269--75844797 Score: 445
Period size: 54 Copynumber: 9.8 Consensus size: 52
75844259 TTAGTTTACC
* * *
75844269 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAG--TGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
75844323 AAATCACCAAAATA-CCTCTAGTTTGTAAAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCT-TAG--TGTAAAATTACCAAAATACCCTTGGTTTATA
* *
75844377 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAG--TGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
75844431 AAATCACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATA-CCCTTA-GTGTAAAATTACCAAAATACCCTTGGTTTATA
*
75844485 AAATTACCAAAATACCCTTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAG--TGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
75844539 AAATTA-CAAAATACCCCTAATTTGTAAAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATA-CCCTTA-GTGTAAAATTACCAAAATACC-CTTGGTTTATA
* * * *
75844592 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTATG
1 AAATTACCAAAATACCCTTAG--TGTAAAATTACCAAAATACCCTTGGTTTATA
** * * *** ** *
75844646 AAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCT-TA-GTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *** * * *
75844700 AAACTACCAAAATACCCTT-GATCTACAGAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTAG-TGTA-A-AATTACCAAAATACCCTTGGTTTATA
* * *
75844754 AAATTACCGAAATACCTCTGTAGGGTAGAATTACCAAAATACCC
1 AAATTACCAAAATACC-CT-TAGTGTAAAATTACCAAAATACCC
75844798 CTGTAGTAGA
Statistics
Matches: 384, Mismatches: 70, Indels: 42
0.77 0.14 0.08
Matches are distributed among these distances:
52 3 0.01
53 53 0.14
54 314 0.82
55 10 0.03
56 3 0.01
57 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (52 bp):
AAATTACCAAAATACCCTTAGTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:75844827 original size:52 final size:53
Alignment explanation
Indices: 75844763--75844894 Score: 196
Period size: 52 Copynumber: 2.5 Consensus size: 53
75844753 AAAATTACCG
*
75844763 AAATACCTCTGTAGGGTAGAATTACCAAAATACCCCTGTA-GTAGAATTA-TCA
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGTAGAATTACT-A
* *
75844815 CAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTA-GGTAGAATTACTA
*
75844869 AAATACCCCTGTAGGGTGGAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
75844895 GAGATACCTT
Statistics
Matches: 72, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
52 37 0.51
54 34 0.47
55 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (53 bp):
AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGTAGAATTACTA
Found at i:75845399 original size:22 final size:22
Alignment explanation
Indices: 75845347--75845411 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
75845337 TTAAAGCCTT
* *
75845347 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
75845369 CT-ACATATGGCTCTGTCCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
75845391 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
75845412 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:75845600 original size:27 final size:27
Alignment explanation
Indices: 75845570--75845671 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
75845560 ATTCTGTTAA
*
75845570 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
*
75845597 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
*
75845624 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* * *
75845651 GTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTG
75845672 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:75845628 original size:54 final size:53
Alignment explanation
Indices: 75845570--75845671 Score: 150
Period size: 54 Copynumber: 1.9 Consensus size: 53
75845560 ATTCTGTTAA
* * *
75845570 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
75845624 GTGGCTTTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTTTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
75845672 ATAACTGAGC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 8 0.19
54 35 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (53 bp):
GTGGCTTTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:75845846 original size:6 final size:6
Alignment explanation
Indices: 75845808--75845920 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
75845798 TTGCATTCAC
* * * *
75845808 ATTCTG ATTTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTTTG ATTTTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
75845858 -TTACCTG ATACTG ATTCTG ATT-TG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
75845907 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
75845921 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
4 1 0.01
5 8 0.10
6 58 0.71
7 11 0.13
8 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75845854 original size:31 final size:31
Alignment explanation
Indices: 75845808--75845880 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 31
75845798 TTGCATTCAC
75845808 ATTCTGATTTTTGATTCTATTACCTGATACTG
1 ATTCTGA-TTTTGATTCTATTACCTGATACTG
* *
75845840 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
75845871 ATTCTGATTT
1 ATTCTGATTT
75845881 GTCACCTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTGATACTG
Found at i:75845887 original size:24 final size:24
Alignment explanation
Indices: 75845837--75845903 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
75845827 TTACCTGATA
* *
75845837 CTGATTCTGATTTTGATTTTGTTAC
1 CTGATTCTGATTCTGA-TTTGTCAC
*
75845862 CTGATACTGATTCTGATTTGTCAC
1 CTGATTCTGATTCTGATTTGTCAC
*
75845886 CTAATTCTGATTCTGATT
1 CTGATTCTGATTCTGATT
75845904 CTGATTCTAG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 23 0.62
25 14 0.38
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (24 bp):
CTGATTCTGATTCTGATTTGTCAC
Found at i:75847901 original size:27 final size:27
Alignment explanation
Indices: 75847871--75848186 Score: 407
Period size: 27 Copynumber: 11.7 Consensus size: 27
75847861 TTAGTTTACC
* *
75847871 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75847898 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75847925 AAATCACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
**
75847952 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTAGTTTGTA
*
75847979 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75848006 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75848033 AAATCACCAAAATACCCATAATTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
**
75848060 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCTTAGTTTGTA
* *
75848087 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
* * *
75848114 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTAGTTTGTA
75848141 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTAGTTTGTA
*
75848168 AAATTACCAAAGTACCCTT
1 AAATTACCAAAATACCCTT
75848187 GATCTATAGA
Statistics
Matches: 246, Mismatches: 43, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 246 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTAGTTTGTA
Found at i:75847936 original size:54 final size:54
Alignment explanation
Indices: 75847871--75848202 Score: 493
Period size: 54 Copynumber: 6.1 Consensus size: 54
75847861 TTAGTTTACC
* *
75847871 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
75847925 AAATCACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
75847979 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
75848033 AAATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
75848087 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
75848141 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAGTACCCTTGATCTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
75848195 GAATTACC
1 AAATTACC
75848203 TTTTTACCCT
Statistics
Matches: 247, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 247 1.00
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:75848211 original size:108 final size:108
Alignment explanation
Indices: 75847861--75848186 Score: 589
Period size: 108 Copynumber: 3.0 Consensus size: 108
75847851 TTAGAATACT
*
75847861 TTAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
*
75847926 AATCACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCC
66 AATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCC
*
75847969 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
75848034 AATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCC
66 AATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCC
75848077 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
1 TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
* * * *
75848142 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAGTACCC
66 AATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCC
75848185 TT
1 TT
75848187 GATCTATAGA
Statistics
Matches: 210, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 210 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.32
Consensus pattern (108 bp):
TTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAA
AATCACCAAAATACCCATAATTTGTAAAATTACCAAAATACCC
Found at i:75848276 original size:27 final size:27
Alignment explanation
Indices: 75848223--75848441 Score: 277
Period size: 27 Copynumber: 8.3 Consensus size: 27
75848213 CGATTTACAA
* * *
75848223 AATTACAGGAATACCCT-GTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75848249 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
75848276 AATTATCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
75848303 AATTACCGAAATACCCCTGTA--GTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
75848328 AATTATC-ACAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
75848355 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
75848382 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
75848409 AATTACCGAGATA-CCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
75848435 AATTACC
1 AATTACC
75848442 ATTTTGCCCC
Statistics
Matches: 168, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.01
25 22 0.13
26 31 0.18
27 113 0.67
28 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:75848349 original size:79 final size:79
Alignment explanation
Indices: 75848223--75848441 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
75848213 CGATTTACAA
* *
75848223 AATTACAGGAATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAA
1 AATTACAGAAATACCCCTGTA--GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAA
*
75848287 TACCTCTGTAGGGTAG
64 TACCCCTGTAGGGTAG
* * *
75848303 AATTACCGAAATACCCCTGTAGTAGAATTATC-ACAATACCCCTGTAGGGTAGAATTACCGAAAT
1 AATTACAGAAATACCCCTGTAGTAGAATTACCGA-AATACCCCTGTAGGATAGAATTACCGAAAT
75848367 ACCCCTGTAGGGTAG
65 ACCCCTGTAGGGTAG
* * * * *
75848382 AATTACTA-AAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTGTAGGGTAAAATTACC
1 AATTAC-AGAAATACCCCTGTA--GTAGAATTACCGAAATACCCCTGTAGGATAGAATTACC
75848442 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 71 0.59
80 29 0.24
81 19 0.16
82 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (79 bp):
AATTACAGAAATACCCCTGTAGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACCGAAATA
CCCCTGTAGGGTAG
Found at i:75848369 original size:106 final size:105
Alignment explanation
Indices: 75848232--75848423 Score: 314
Period size: 106 Copynumber: 1.8 Consensus size: 105
75848222 AAATTACAGG
* *
75848232 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTA-TCGAAATACCTCTGT
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACT-AAAATACCCCTGT
75848296 AGGGTAGAATTACCGAAATACCCCTGTAGTAGAATTATCAC
65 AGGGTAGAATTACCGAAATACCCCTGTAGTAGAATTATCAC
*
75848337 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGT
1 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTGT
* *
75848402 AGGGTGGAATTACCGAGATACC
65 AGGGTAGAATTACCGAAATACC
75848424 TTGTAGGGTA
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
105 4 0.05
106 75 0.94
107 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.24
Consensus pattern (105 bp):
AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTGTA
GGGTAGAATTACCGAAATACCCCTGTAGTAGAATTATCAC
Found at i:75848920 original size:22 final size:22
Alignment explanation
Indices: 75848868--75848932 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
75848858 TTAAAGCCTT
* *
75848868 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
75848890 CT-ACATATGGCTCTGTCCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
75848912 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
75848933 ACGTATTTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:75849121 original size:27 final size:27
Alignment explanation
Indices: 75849091--75849192 Score: 89
Period size: 27 Copynumber: 3.8 Consensus size: 27
75849081 ATTCTGTTAA
* * *
75849091 GTGGCTTTGCCATATTATCTGTTTCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
*
75849118 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCA-AAATATCTGTTTCTG
* * *
75849145 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCAAAATATCTGTTTCTG
* * * *
75849172 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCAAAATATCTG
75849193 ATAATTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCAAAATATCTGTTTCTG
Found at i:75849367 original size:6 final size:6
Alignment explanation
Indices: 75849352--75849432 Score: 51
Period size: 6 Copynumber: 13.3 Consensus size: 6
75849342 ATTCTGTCAC
* * * *
75849352 CTGATA CTGATT CTGATT TTGATT TTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
75849401 -TG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
75849433 AGTTCTAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
4 1 0.02
5 4 0.07
6 49 0.83
7 3 0.05
8 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:75849375 original size:31 final size:31
Alignment explanation
Indices: 75849329--75849401 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 31
75849319 TTGCATTCAC
75849329 ATTCTGATTTTTGATTCTGTCACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTCACCTGATACTG
* *
75849361 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACCTGATACTG
75849392 ATTCTGATTT
1 ATTCTGATTT
75849402 GTCACCTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 32 0.82
32 7 0.18
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACCTGATACTG
Found at i:75849408 original size:24 final size:24
Alignment explanation
Indices: 75849358--75849424 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
75849348 TCACCTGATA
* *
75849358 CTGATTCTGATTTTGATTTTGTTAC
1 CTGATTCTGATTCTGA-TTTGTCAC
*
75849383 CTGATACTGATTCTGATTTGTCAC
1 CTGATTCTGATTCTGATTTGTCAC
*
75849407 CTAATTCTGATTCTGATT
1 CTGATTCTGATTCTGATT
75849425 CTGATTCTAG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 23 0.62
25 14 0.38
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (24 bp):
CTGATTCTGATTCTGATTTGTCAC
Found at i:75851845 original size:56 final size:56
Alignment explanation
Indices: 75851726--75851851 Score: 135
Period size: 56 Copynumber: 2.2 Consensus size: 56
75851716 AGACCATGGC
* * * * * *
75851726 ATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGC
1 ATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCACGTCTAAGACATTGGA
* * * ** **
75851782 ATTGATATGTGATTCCGATATGTGTTTACGAGTAAGACCGTGTCTGGGACATTGGA
1 ATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCACGTCTAAGACATTGGA
75851838 ATCGATATGTGATT
1 ATCGATATGTGATT
75851852 ACATGTACGA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (56 bp):
ATCGATATGTGATTCCGATATATGTGTACGAGTAAGACCACGTCTAAGACATTGGA
Found at i:75853272 original size:17 final size:17
Alignment explanation
Indices: 75853250--75853286 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
75853240 GATAAATTAG
75853250 ATATATTT-GGTTGATGA
1 ATATATTTAGGTT-ATGA
75853267 ATATATTTAGGTTATGA
1 ATATATTTAGGTTATGA
75853284 ATA
1 ATA
75853287 GATAATGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (17 bp):
ATATATTTAGGTTATGA
Found at i:75861248 original size:8 final size:8
Alignment explanation
Indices: 75861235--75861267 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
75861225 ATGGCTGTAA
75861235 ACACTAAT
1 ACACTAAT
75861243 ACACTAAT
1 ACACTAAT
75861251 ACACTAAT
1 ACACTAAT
75861259 ACACTAAT
1 ACACTAAT
75861267 A
1 A
75861268 AAGTGTTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (8 bp):
ACACTAAT
Found at i:75862062 original size:41 final size:42
Alignment explanation
Indices: 75861997--75862077 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 42
75861987 CCAAAATTGG
** *
75861997 ACACATGGGTAGAGACACGGGCATGTGTCTTAGCCGTGTGTA
1 ACACATGCCTAGAGACACGGGCATGTATCTTAGCCGTGTGTA
* *
75862039 ACACATGCCTAGA-ACATGGGCATGTATCTTGGCCGTGTG
1 ACACATGCCTAGAGACACGGGCATGTATCTTAGCCGTGTG
75862078 AAACCTGCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 23 0.68
42 11 0.32
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (42 bp):
ACACATGCCTAGAGACACGGGCATGTATCTTAGCCGTGTGTA
Found at i:75863478 original size:19 final size:20
Alignment explanation
Indices: 75863454--75863499 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
75863444 CCACATGGGC
75863454 ATGTGTTT-TGGACACACGG
1 ATGTGTTTGTGGACACACGG
*
75863473 ATGTGTTTGGTGGGCACACGG
1 ATGTGTTT-GTGGACACACGG
*
75863494 GTGTGT
1 ATGTGT
75863500 GAAACCCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
21 15 0.65
ACGTcount: A:0.15, C:0.13, G:0.39, T:0.33
Consensus pattern (20 bp):
ATGTGTTTGTGGACACACGG
Found at i:75866851 original size:21 final size:22
Alignment explanation
Indices: 75866827--75866881 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
75866817 TAAGGATCCT
75866827 ACACGGGCATGTGTTT-TGGAC
1 ACACGGGCATGTGTTTGTGGAC
* *
75866848 ACAC-AGC-TGTGTTTGGTGGGC
1 ACACGGGCATGTGTTT-GTGGAC
75866869 ACACGGGCATGTG
1 ACACGGGCATGTG
75866882 AAACCCTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
19 7 0.26
20 2 0.07
21 12 0.44
22 2 0.07
23 4 0.15
ACGTcount: A:0.18, C:0.20, G:0.36, T:0.25
Consensus pattern (22 bp):
ACACGGGCATGTGTTTGTGGAC
Found at i:75872166 original size:21 final size:21
Alignment explanation
Indices: 75872142--75872208 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
75872132 AAAAGAATCC
75872142 CATGTATAAATATCATCATCT
1 CATGTATAAATATCATCATCT
* *
75872163 CATGTTCATCAAA-A-GA--ATCC
1 CATG-T-AT-AAATATCATCATCT
75872183 CATGTATAAATATCATCATCT
1 CATGTATAAATATCATCATCT
75872204 CATGT
1 CATGT
75872209 TTTCATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
17 3 0.09
18 3 0.09
19 2 0.06
20 7 0.20
21 12 0.34
22 2 0.06
23 3 0.09
24 3 0.09
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.34
Consensus pattern (21 bp):
CATGTATAAATATCATCATCT
Found at i:75872231 original size:43 final size:41
Alignment explanation
Indices: 75872126--75872209 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
75872116 GATGAACATA
75872126 TTCATCAAAAGAATCCCATGTATAAATATCATCATCTCATG
1 TTCATCAAAAGAATCCCATGTATAAATATCATCATCTCATG
75872167 TTCATCAAAAGAATCCCATGTATAAATATCATCATCTCATG
1 TTCATCAAAAGAATCCCATGTATAAATATCATCATCTCATG
75872208 TT
1 TT
75872210 TTCATATGTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.33
Consensus pattern (41 bp):
TTCATCAAAAGAATCCCATGTATAAATATCATCATCTCATG
Found at i:75892591 original size:39 final size:40
Alignment explanation
Indices: 75892562--75892746 Score: 290
Period size: 39 Copynumber: 4.7 Consensus size: 40
75892552 GCTACTTGCT
75892562 CAAATGCCTTCGGGACTTA-CCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
75892601 CAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75892640 CAAATGCCTTCGGGACTTAG-CCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
75892679 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
75892718 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75892747 CATCCGAATA
Statistics
Matches: 135, Mismatches: 5, Indels: 11
0.89 0.03 0.07
Matches are distributed among these distances:
38 8 0.06
39 112 0.83
40 14 0.10
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75892735 original size:117 final size:118
Alignment explanation
Indices: 75892529--75892746 Score: 318
Period size: 117 Copynumber: 1.9 Consensus size: 118
75892519 AAACCAAGTA
* * * *
75892529 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTACCCGGTTATAGTA
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTACCCGGATATAGTA
*
75892594 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCGCACAAATG
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
75892646 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGAACTTAGCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTA-CCCGGATA-TA
*
75892708 GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
75892747 CATCCGAATA
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
116 6 0.07
117 79 0.88
118 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (118 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTACCCGGATATAGTA
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:75900672 original size:40 final size:40
Alignment explanation
Indices: 75900628--75900815 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
75900618 GCTACTTGCT
75900628 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
75900668 CAAATGCCTTCGGGACTTAGCCCGGTTATAGGAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
75900708 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
75900748 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
75900787 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
75900816 CATCCGAATA
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 101 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:75900806 original size:119 final size:119
Alignment explanation
Indices: 75900595--75900815 Score: 324
Period size: 119 Copynumber: 1.9 Consensus size: 119
75900585 AAACCAAGTA
* * *
75900595 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
75900660 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGGAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGGAACTCGCACAAATG
*
75900714 CCTTCGGGACTTAGCCCGGATATAG-TAACTCG-TACAAATGCCTTCGGG-CTTAGCCCGGA-AT
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCT-CAAATGCCTTCGGGACTTAGCCCGGATA-
*
75900775 TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
62 TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
75900816 CATCCGAATA
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
118 1 0.01
119 63 0.68
120 28 0.30
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGGAACTCGCACAAATG
Found at i:75919279 original size:43 final size:41
Alignment explanation
Indices: 75919132--75919279 Score: 108
Period size: 43 Copynumber: 3.5 Consensus size: 41
75919122 TGTAATTTCG
* *
75919132 TGTAAGACCACGTCTGGGATGTTGGCATCGAT-TTGAGACTTACG
1 TGTAAGACCACGTCTGGGATG-T-GCATCGATATT-TGA-TTACA
* * *
75919176 TCTAAGACCATGTCTGGGGCATCG-GCATC-ATATTTGATTTCA
1 TGTAAGACCACGTCT-GGG-AT-GTGCATCGATATTTGATTACA
*
75919218 TGTAAGACC-C-TAATTGGGATAGTAGCATCGATATTTGATTACA
1 TGTAAGACCACGT--CTGGGAT-GT-GCATCGATATTTGATTACA
75919261 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
75919280 CGTTGGTATT
Statistics
Matches: 82, Mismatches: 11, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
40 4 0.05
41 3 0.04
42 17 0.21
43 30 0.37
44 21 0.26
45 4 0.05
46 2 0.02
47 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGATGTGCATCGATATTTGATTACA
Found at i:75921592 original size:28 final size:28
Alignment explanation
Indices: 75921561--75921630 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
75921551 ATATTTTCCT
*
75921561 TCGCACACTTAGTGCTCGA-TAATCAAAC
1 TCGCACACTTAGTGCTC-ATTAACCAAAC
75921589 TCGCACACTTAGTGCTCATTAACCAAAC
1 TCGCACACTTAGTGCTCATTAACCAAAC
**
75921617 TCGCATGCTTAGTG
1 TCGCACACTTAGTG
75921631 AAATTTTCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCGCACACTTAGTGCTCATTAACCAAAC
Done.