Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 225 of 362
Found at i:75934895 original size:27 final size:27
Alignment explanation
Indices: 75934837--75935318 Score: 350
Period size: 27 Copynumber: 18.0 Consensus size: 27
75934827 ATGTTGGTTT
* ** *
75934837 ACAAATCGAGGGT-GTTTCATAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* ***
75934863 ACAAATCGAGGGTGTTTCAATAATTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
* *
75934890 AAAAATCGAGGGTATTTTGATAATTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * * *
75934917 AAAAATCGAAGGTATTTTGATAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
*
75934944 ACAAATCGAGGGTATTTTAGTAATTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
* *
75934971 AC-AATTGAGGGT-TATTTGGTAATTTT
1 ACAAATCGAGGGTAT-TTTGGTAATTTC
* * * ** *
75934997 ACAAATTGAGGGTGTGTCAGTAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * *
75935024 ACAAATCAAAGGTGTTTTGGTAATTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * ** *
75935051 ACAATTCGAGGGTGTTTCAGTAGTTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * *
75935078 ACAAATTGGGGGTATTTTGGTAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * *
75935105 ACAAATCGAGGGTATTTCGATAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* *
75935132 ACAAAT-GAAAGGTATTTTAGTAATTTC
1 ACAAATCG-AGGGTATTTTGGTAATTTC
* *
75935159 AC-AATCGAGGGTATTTTAGTAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * * *
75935185 ACAAAT-TAGGAGTATTTCGATAATTTT
1 ACAAATCGAGG-GTATTTTGGTAATTTC
** *
75935212 ACAAATC-AGGGTATTTCAGTAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * * * *
75935238 ACAAATTGGGGGAATTTTTGTAATTTT
1 ACAAATCGAGGGTATTTTGGTAATTTC
* * *
75935265 ATAAA-CTGGGGGTATTTTGGTAATTTT
1 ACAAATC-GAGGGTATTTTGGTAATTTC
* *
75935292 ACAAATCGAGGGTATTTCGATAATTTC
1 ACAAATCGAGGGTATTTTGGTAATTTC
75935319 TCTTTACTAT
Statistics
Matches: 371, Mismatches: 73, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
25 1 0.00
26 80 0.22
27 288 0.78
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
ACAAATCGAGGGTATTTTGGTAATTTC
Found at i:75935316 original size:54 final size:54
Alignment explanation
Indices: 75934834--75935317 Score: 434
Period size: 54 Copynumber: 9.0 Consensus size: 54
75934824 GTTATGTTGG
* * **
75934834 TTTACAAATCGAGGGTGTTTCA-TAATTTTACAAATCGAGGGTGTTTCAATAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAAT
* * * * * *
75934887 TTCAAAAATCGAGGGTATTT-TGATAATTTCAAAAATCGAAGGTATTTTGATAAT
1 TTTACAAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTTGATAAT
* * * *
75934941 TTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATTGAGGGT-TATTTGGTAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTAT-TTTGATAAT
* * * * * * *
75934994 TTTACAAATTGAGGGTGTGTCAGTAATTTTACAAATCAAAGGTGTTTTGGTAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAAT
* * * * * * * *
75935048 TTCACAATTCGAGGGTGTTTCAGTAGTTTCACAAATTGGGGGTATTTTGGTAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAAT
*
75935102 TTTACAAATCGAGGGTATTTC-GATAATTTTACAAAT-GAAAGGTATTTT-AGTAAT
1 TTTACAAATCGAGGGTATTTCAG-TAATTTTACAAATCG-AGGGTATTTTGA-TAAT
* * * *
75935156 TTCAC-AATCGAGGGTATTTTAGTAATTTTACAAAT-TAGGAGTATTTCGATAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGG-GTATTTTGATAAT
* * *
75935209 TTTACAAATC-AGGGTATTTCAGTAATTTTACAAATTGGGGGAATTTTTG-TAAT
1 TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTA-TTTTGATAAT
* * ** *
75935262 TTTATAAA-CTGGGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGATAAT
1 TTTACAAATC-GAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAAT
75935316 TT
1 TT
75935318 CTCTTTACTA
Statistics
Matches: 350, Mismatches: 63, Indels: 35
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.01
53 144 0.41
54 200 0.57
55 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
TTTACAAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTGATAAT
Found at i:75935657 original size:28 final size:28
Alignment explanation
Indices: 75935617--75935717 Score: 148
Period size: 28 Copynumber: 3.6 Consensus size: 28
75935607 ATCCACACTT
* * * *
75935617 ATTCATTTGGCCCTTTAGGCCCAATCTC
1 ATTCATATGGCCCATCAGGCCCAATCAC
*
75935645 ATTCACATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATCAGGCCCAATCAC
*
75935673 ATTCATATGGCCCATCAGGCCTAATCAC
1 ATTCATATGGCCCATCAGGCCCAATCAC
75935701 ATTCATATGGCCCATCA
1 ATTCATATGGCCCATCA
75935718 TGTCGAACTA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.27
Consensus pattern (28 bp):
ATTCATATGGCCCATCAGGCCCAATCAC
Found at i:75936899 original size:43 final size:43
Alignment explanation
Indices: 75936826--75936908 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
75936816 ATCGTCATCG
* * *
75936826 TATTTGATTTCGTGTAAGACGCTGTCTGGGACAG-TGGCATAGA
1 TATTTGATTACATGTAAGACGCCGTCTGGGAC-GTTGGCATAGA
*
75936869 TATTTGATTACATGTAAGAC-CACGTTTGGGACGTTGGCAT
1 TATTTGATTACATGTAAGACGC-CGTCTGGGACGTTGGCAT
75936909 TGTATGAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACGCCGTCTGGGACGTTGGCATAGA
Found at i:75939036 original size:28 final size:28
Alignment explanation
Indices: 75938971--75939069 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
75938961 CATGAGATTG
* * *
75938971 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
75939000 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
75939028 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
75939056 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
75939070 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:75950237 original size:26 final size:26
Alignment explanation
Indices: 75950201--75950252 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
75950191 TTACGAGCCT
75950201 AGGGACTAAAATGTAAAAATGTCAAA
1 AGGGACTAAAATGTAAAAATGTCAAA
75950227 AGGGACTAAAATGTAAAAATGTCAAA
1 AGGGACTAAAATGTAAAAATGTCAAA
75950253 CTTTAGGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.08, G:0.19, T:0.19
Consensus pattern (26 bp):
AGGGACTAAAATGTAAAAATGTCAAA
Found at i:75954227 original size:22 final size:22
Alignment explanation
Indices: 75954199--75954274 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
75954189 ATGTGTATAT
75954199 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
75954221 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
75954243 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
75954268 ATGTGAT
1 ATGTGAT
75954275 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:75954228 original size:47 final size:47
Alignment explanation
Indices: 75954174--75954320 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
75954164 TTAGGATTTT
** *
75954174 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
75954221 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
75954268 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
75954315 ATGTGA
1 ATGTGA
75954321 AATATGTATG
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:75966391 original size:47 final size:47
Alignment explanation
Indices: 75966333--75966734 Score: 628
Period size: 47 Copynumber: 8.6 Consensus size: 47
75966323 GATAATTGTG
* *
75966333 ATGTG-AA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75966378 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75966427 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75966474 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75966521 ATGTGAAAGTGTATATATTTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75966568 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75966615 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75966662 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75966709 ATGTGAAAGTCTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75966735 TCCCAAAGGG
Statistics
Matches: 330, Mismatches: 23, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
45 5 0.02
46 2 0.01
47 278 0.84
49 45 0.14
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75974213 original size:16 final size:15
Alignment explanation
Indices: 75974175--75974213 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
75974165 TGGATTTTCG
*
75974175 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
75974190 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
75974205 TATTCTTGG
1 TA-TCTTGG
75974214 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:75977048 original size:51 final size:51
Alignment explanation
Indices: 75976967--75977168 Score: 198
Period size: 50 Copynumber: 4.0 Consensus size: 51
75976957 GCTATTGTGA
*
75976967 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTC
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
* * * * * ** *
75977018 GATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAAAT-GGTTA
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
* * *
75977068 GGTCACGTGTGTATTACTAAGTGCAGGCTACTACT-TGTACC-GTATAA-TT-
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTA-TGCGTACCAG-ATAACTTC
* * * * *
75977117 GGTCGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCAGATAGCTTC
1 GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
75977168 G
1 G
75977169 GCTACAAGTG
Statistics
Matches: 122, Mismatches: 22, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
48 1 0.01
49 37 0.30
50 44 0.36
51 40 0.33
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (51 bp):
GATCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTC
Found at i:75979814 original size:93 final size:93
Alignment explanation
Indices: 75979655--75979827 Score: 247
Period size: 93 Copynumber: 1.9 Consensus size: 93
75979645 CGGGTATTTG
* * * ** *
75979655 GGCATTCAAACTCGTTGAGTTGAGTCTGGGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATTCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCCGAACTCATTGAG
*
75979720 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCGGAGTTCGTGAGATGTAACTA
* * * *
75979748 GGCATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACACCCGAGCTCATTGAG
1 GGCATTCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCCGAACTCATTGAG
75979813 TTGAGTCGGAGTTCG
66 TTGAGTCGGAGTTCG
75979828 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATTCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCCGAACTCATTGAG
TTGAGTCGGAGTTCGTGAGATGTAACTA
Found at i:75981793 original size:27 final size:27
Alignment explanation
Indices: 75981762--75981913 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
75981752 TAAATTGTAC
75981762 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75981789 TGCACTAAGTGTGCGAAATGAAATATG-
1 AGCACTAAGTGTGCGATTTG-ACTATGT
75981816 ATGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGA-TTTGACTATGT
* *
75981845 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75981872 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75981899 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75981914 GACTCAATAT
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
27 64 0.60
28 40 0.37
29 3 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75989702 original size:27 final size:27
Alignment explanation
Indices: 75989671--75989821 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
75989661 TAAATTGTAC
75989671 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** * *
75989698 TGCACTATGTGTGCGAAATAAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75989724 ATGCACTAAGTGTGCGAGTTTAACTATGT
1 A-GCACTAAGTGTGCGA-TTTGACTATGT
* *
75989753 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75989780 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75989807 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75989822 GACTCAATAT
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 80 0.78
28 22 0.21
29 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75989785 original size:55 final size:54
Alignment explanation
Indices: 75989671--75989821 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 54
75989661 TAAATTGTAC
* * *
75989671 AGCACTAAGTGTGCGA-TTTGACTATGTTGCACTATGTGTGCGAAATAAATATG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATAAATACG
* ** * *
75989724 ATGCACTAAGTGTGCGAGTTTAACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 A-GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATAAATACG
* * *
75989779 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
75989822 GACTCAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 36 0.43
55 45 0.54
56 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATAAATACG
Found at i:76000732 original size:26 final size:26
Alignment explanation
Indices: 76000703--76000756 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
76000693 GCAAAAGGGT
*
76000703 TTATGCCCCAGTTTACCGAAAATGGC
1 TTATGCCCCAGTTTACCGAAAAAGGC
*
76000729 TTATGCCCCAGTTTATCGAAAAAGGC
1 TTATGCCCCAGTTTACCGAAAAAGGC
76000755 TT
1 TT
76000757 GTAACACCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
TTATGCCCCAGTTTACCGAAAAAGGC
Found at i:76002742 original size:68 final size:64
Alignment explanation
Indices: 76002528--76002751 Score: 204
Period size: 67 Copynumber: 3.4 Consensus size: 64
76002518 ATATAGTTCG
* * * *
76002528 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
* * * * *
76002591 GCTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATA-TCC
1 GCTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACCCATGCGACCTAGCTACATATATTCT
76002654 CGTA
61 CGTA
* * *
76002658 GCTCTCTTGTATACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTC
76002723 GTA
62 GTA
* *
76002726 GCTCTCTTGTACACATGATGTGCACT
1 GCTCTCTTGTACACATGGTGTACACT
76002752 CAACACCGTA
Statistics
Matches: 129, Mismatches: 20, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.15
64 27 0.21
65 2 0.02
66 22 0.17
67 31 0.24
68 27 0.21
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTACACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATTCTCGTA
Found at i:76004598 original size:32 final size:32
Alignment explanation
Indices: 76004557--76004621 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
76004547 CGTTTACAAT
76004557 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
** *
76004589 AAAGGCTTCGGCCCAGTGTTATGCAATATGAA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAA
76004621 A
1 A
76004622 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAA
Found at i:76025243 original size:46 final size:46
Alignment explanation
Indices: 76025099--76025362 Score: 241
Period size: 46 Copynumber: 5.6 Consensus size: 46
76025089 TTTGTGTGCT
* *
76025099 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * *
76025145 AGTGTAAGAACATGTCTTGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
76025193 AGTGTACGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
76025239 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* * * * * *
76025283 AGTGTAAGACCATGCCTGGGACATGGCATCAGCATGGATATATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG--AGATGAGAGCC
*
76025333 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
76025363 AGCATTATAC
Statistics
Matches: 179, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
46 67 0.37
47 30 0.17
48 25 0.14
49 1 0.01
50 30 0.17
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:76025337 original size:94 final size:94
Alignment explanation
Indices: 76025096--76025367 Score: 281
Period size: 94 Copynumber: 2.9 Consensus size: 94
76025086 TTATTTGTGT
*
76025096 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAT-TATGAGAGCCAGTGTAAGAACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATGATATATGAGAGCCAGTGTAAG-ACATG
* *
76025159 TCTTGGACATGGCATCGGCATTGAGACGAGA
64 TCTAGGACATGGCATCGGCATCGAGACGAGA
* * * *
76025190 GCTAGTGTACGACATGTCTGGGACATGCATCGGCCTCGAGATGT-A-AGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-GATATATGAGAGCCAGTGTAAGACATGT
* * *
76025253 CTGGGACAT-GCATCGGC-TACGAGATGTG-
65 CTAGGACATGGCATCGGCAT-CGAGACGAGA
* * * *
76025281 TC-AGTGTAAGACCATGCCTGGGACATGGCATCAGCATGGATATATGAGAGCTAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAT-GATATATGAGAGCCAGTGTAAGA-CA
*
76025345 TGTCTAGGACATGGCATCAGCAT
62 TGTCTAGGACATGGCATCGGCAT
76025368 TATACCCTAT
Statistics
Matches: 147, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
90 8 0.05
91 15 0.10
92 27 0.18
93 16 0.11
94 56 0.38
95 15 0.10
96 9 0.06
97 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATGATATATGAGAGCCAGTGTAAGACATGTC
TAGGACATGGCATCGGCATCGAGACGAGA
Found at i:76030684 original size:30 final size:30
Alignment explanation
Indices: 76030640--76030728 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
76030630 CAAAGATAAC
*
76030640 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
76030669 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
76030699 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
76030729 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:76030688 original size:15 final size:14
Alignment explanation
Indices: 76030640--76030722 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
76030630 CAAAGATAAC
*
76030640 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
76030654 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
76030669 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
76030684 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
76030699 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
76030714 AAGAAACCC
1 AAGAAACCC
76030723 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:76030728 original size:15 final size:15
Alignment explanation
Indices: 76030651--76030728 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
76030641 AGAAAACCGA
76030651 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
76030666 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
76030680 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76030695 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76030711 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76030726 ATA
1 ATA
76030729 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76033749 original size:93 final size:93
Alignment explanation
Indices: 76033637--76033807 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76033627 GCCCATAAGT
* *
76033637 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
76033702 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
76033730 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
76033795 CGAGTTCGGATGC
66 CGAGCTCGGATGC
76033808 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:76033804 original size:46 final size:46
Alignment explanation
Indices: 76033629--76033804 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
76033619 TGTAACCCGC
* * *
76033629 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
76033675 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
76033725 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
76033768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
76033805 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:76102390 original size:180 final size:180
Alignment explanation
Indices: 76102091--76102416 Score: 537
Period size: 180 Copynumber: 1.8 Consensus size: 180
76102081 ATTTTCTCTA
76102091 AAACTAGACTCGTATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATTAGTACA
1 AAACTAGACTCGTATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATTAGTACA
* * *
76102156 GTTTATTCAATAAAGATACCCCTGTTTCACTATCTGACAGTTCTGACTTCTCTTCACTAAAAATT
66 GTTTATTCAATAAAGAAACCCCTGTTTCACTATCTGACAGTTCCGACCTCTCTTCACTAAAAATT
*
76102221 ATTTATTTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACCAG
131 ATTTATCTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACCAG
* * *
76102271 AAACTAGACTCGTATATATTTTTACCATAAAATTTTCCA-AATTTTTAGTTTGGCCATTTAGTAC
1 AAACTAGACTCGTATATATTCTTACCATAAAATTTT-CAGAATTTTTAGTTTAGCCAATTAGTAC
* * *
76102335 AGTTTATTCATTAAATAAACCCCTGTTTCACTATTTGACAGTTCCGACCTCTCTTCACTAAAAAT
65 AGTTTATTCAATAAAGAAACCCCTGTTTCACTATCTGACAGTTCCGACCTCTCTTCACTAAAAAT
*
76102400 TATTTATCTCGTGGTAC
130 TATTTATCTCATGGTAC
76102417 AGCTACCGAA
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
180 132 0.99
181 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (180 bp):
AAACTAGACTCGTATATATTCTTACCATAAAATTTTCAGAATTTTTAGTTTAGCCAATTAGTACA
GTTTATTCAATAAAGAAACCCCTGTTTCACTATCTGACAGTTCCGACCTCTCTTCACTAAAAATT
ATTTATCTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACCAG
Found at i:76102760 original size:16 final size:16
Alignment explanation
Indices: 76102741--76102772 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76102731 AATTGTTTTA
76102741 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
76102757 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
76102773 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:76103075 original size:50 final size:50
Alignment explanation
Indices: 76102981--76103466 Score: 487
Period size: 50 Copynumber: 9.6 Consensus size: 50
76102971 CTCAGGTATG
*
76102981 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
* * * * * *
76103031 CGTAGTAGCCTGCACTTAGTACTACATACGTGACTTATCCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
* ** * **
76103081 CGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTAA-C-GAGTATG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTG-GTACA
* * *
76103132 CATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
* * * *
76103182 CATAGCAGCCTGCACTTATTACTACACATGCGACCTATCAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
* * *
76103232 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGC-ATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAATCTGGTACA
* * ** * * ** *
76103282 CGTAGTAGCCTACACTTAGTACTACACATGTGATCGAAACTATCAAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTGGTACA
* * *
76103333 CATAGTAGCCTGCACTTAGTGCTACACATGTGACCTAACAATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
* * * * *
76103383 CGTAGTAGCCTGCACTTAGTACTACACACGTGACGTA--AAACTGTCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTG--GT--ACA
*
76103435 CATAGTAGCCTGCACATAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
76103467 TTCTCACAAT
Statistics
Matches: 363, Mismatches: 61, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
48 5 0.01
49 3 0.01
50 246 0.68
51 75 0.21
52 34 0.09
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACA
Found at i:76103234 original size:24 final size:24
Alignment explanation
Indices: 76103154--76103234 Score: 69
Period size: 24 Copynumber: 3.3 Consensus size: 24
76103144 CACTTAGTAC
76103154 TACACATGCGACCTATCAATCCGG
1 TACACATGCGACCTATCAATCCGG
* * *
76103178 TACACATAGC-AGCCTGCACTTATTAC--
1 TACACAT-GCGA-CCT--A-TCAATCCGG
76103204 TACACATGCGACCTATCAATCCGG
1 TACACATGCGACCTATCAATCCGG
76103228 TACACAT
1 TACACAT
76103235 AGTAGCCTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
22 4 0.09
23 1 0.02
24 15 0.35
25 10 0.23
26 8 0.19
27 1 0.02
28 4 0.09
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.23
Consensus pattern (24 bp):
TACACATGCGACCTATCAATCCGG
Found at i:76103238 original size:151 final size:151
Alignment explanation
Indices: 76102976--76103416 Score: 562
Period size: 151 Copynumber: 2.9 Consensus size: 151
76102966 AAGCTCTCAG
* *
76102976 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCAGGTACACATAGTAGCC
* * * *
76103041 TGCACTTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
* * *
76103106 ACATGTGATCGAAGTTAAC-GA
131 ACACGTGACCGAAG-CAACTGA
* * *
76103127 GTATGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGCAGCC
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCAGGTACACATAGTAGCC
* * * * *
76103192 TGCACTTATTACTACACATGCGACCTATCAATCCGGTACACATAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
* *
76103257 ACACGTGACCTAAGCATCTGA
131 ACACGTGACCGAAGCAACTGA
** * * * ** * * * *
76103278 -TACACGTAGTAGCCTACACTTAGTACTACACATGTGATCGAAACTATCAAGTACGCATAGTAGC
1 GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCTATCAATCAGGTACACATAGTAGC
* *
76103342 CTGCACTTAGTGCTACACATGTGACCTAACAATCTGATACACGTAGTAGCCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTA
76103407 CACACGTGAC
130 CACACGTGAC
76103417 GTAAAACTGT
Statistics
Matches: 249, Mismatches: 39, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
150 33 0.13
151 216 0.87
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (151 bp):
GTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCAGGTACACATAGTAGCC
TGCACTTAGTACTACACATGTGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
ACACGTGACCGAAGCAACTGA
Found at i:76103345 original size:201 final size:201
Alignment explanation
Indices: 76102981--76103410 Score: 671
Period size: 201 Copynumber: 2.1 Consensus size: 201
76102971 CTCAGGTATG
* *
76102981 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTAGCCTGCAC
* * * *
76103046 TTAGTACTACATACGTGACTTATCCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATG
66 TTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATG
** * * *
76103111 TGATCGAAGTTAACGAGTATGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTATCAATCC
131 TGATCGAAACTAACAAGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTAACAATCC
*
76103176 GGTACA
196 GATACA
* *
76103182 CATAGCAGCCTGCACTTATTACTACACATGCGACCTATCAATCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTAGCCTGCAC
*
76103247 TTAGTACTACACACGTGACCTAAGCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATG
66 TTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATG
* * * * *
76103312 TGATCGAAACTATCAAGTACGCATAGTAGCCTGCACTTAGTGCTACACATGTGACCTAACAATCT
131 TGATCGAAACTAACAAGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTAACAATCC
76103377 GATACA
196 GATACA
*
76103383 CGTAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
76103411 CGTGACGTAA
Statistics
Matches: 206, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
201 206 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (201 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACATG
TGATCGAAACTAACAAGTACGCATAGCAGCCTGCACTTAGTACTACACATGCGACCTAACAATCC
GATACA
Found at i:76103846 original size:19 final size:20
Alignment explanation
Indices: 76103818--76103864 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
76103808 AAGAACATAT
76103818 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
76103839 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
76103858 TATATAT
1 TATATAT
76103865 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:76106451 original size:15 final size:14
Alignment explanation
Indices: 76106426--76106485 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
76106416 TATAGATAAC
*
76106426 AAGAAAACCAAGATT
1 AAGAAATCCAAGA-T
*
76106441 AAGAAGTCCAAGAT
1 AAGAAATCCAAGAT
*
76106455 AGAGAAATCCAGGAT
1 A-AGAAATCCAAGAT
76106470 AAGGAAATCCAAGAT
1 AA-GAAATCCAAGAT
76106485 A
1 A
76106486 CAACATCATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 3 0.08
15 35 0.92
ACGTcount: A:0.53, C:0.13, G:0.20, T:0.13
Consensus pattern (14 bp):
AAGAAATCCAAGAT
Found at i:76106461 original size:30 final size:30
Alignment explanation
Indices: 76106427--76106485 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
76106417 ATAGATAACA
*
76106427 AGAAAACCAAGATTAA-GAAGTCCAAGATAG
1 AGAAAACCAAGA-TAAGGAAATCCAAGATAG
* *
76106457 AGAAATCCAGGATAAGGAAATCCAAGATA
1 AGAAAACCAAGATAAGGAAATCCAAGATA
76106486 CAACATCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.53, C:0.14, G:0.20, T:0.14
Consensus pattern (30 bp):
AGAAAACCAAGATAAGGAAATCCAAGATAG
Found at i:76110471 original size:50 final size:51
Alignment explanation
Indices: 76110136--76110472 Score: 330
Period size: 50 Copynumber: 6.7 Consensus size: 51
76110126 CTGGTATGCA
* * *
76110136 TAGTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
* * * * *
76110186 TAGTAGCCTACACTTAGTACTACACACATGA-CTTATCCATCTTATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
* * * **
76110236 TAGTAGCCTGCACTTAGCACTACACATGCGACCT-ATCAATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
*
76110286 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
* * * * * * *
76110336 TAGTAGCCTGGACTTAGTACTACACACATG-CTCGAAACTATC-GATTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC-CTAATCAATCTGA-TACACG
* * * * ** *
76110387 TAGCAGCTTGCACTTAGTACTGCACATGCAACCTAAT-AATCTGGTACA-G
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
*
76110436 ATAGTAGCCTGCACTTAGTACTAGACACGTGACCTAA
1 -TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
76110473 AACTGTCTTA
Statistics
Matches: 231, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
49 3 0.01
50 189 0.82
51 38 0.16
52 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCAATCTGATACACG
Found at i:76121401 original size:44 final size:44
Alignment explanation
Indices: 76121336--76121419 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 44
76121326 TTATATGTAT
* * *
76121336 CGCATCCATTATGAACTCAGACCTACTCAATGAGTTCAGATGCC
1 CGCATCCATAATGAACCCAGACCAACTCAATGAGTTCAGATGCC
*
76121380 CGCATCCATAATTAACCCAGACCAACTCAATGAGTTCAGA
1 CGCATCCATAATGAACCCAGACCAACTCAATGAGTTCAGA
76121420 ATTCTTAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (44 bp):
CGCATCCATAATGAACCCAGACCAACTCAATGAGTTCAGATGCC
Found at i:76121978 original size:8 final size:8
Alignment explanation
Indices: 76121965--76121990 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
76121955 TTTTACTACC
76121965 CACTTTTA
1 CACTTTTA
76121973 CACTTTTA
1 CACTTTTA
76121981 CACTTTTA
1 CACTTTTA
76121989 CA
1 CA
76121991 AACAAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (8 bp):
CACTTTTA
Found at i:76125270 original size:24 final size:24
Alignment explanation
Indices: 76125238--76125349 Score: 131
Period size: 24 Copynumber: 4.7 Consensus size: 24
76125228 GAAATGACAT
76125238 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
* ** *
76125262 TGGCACTATTTGTATGGATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
76125286 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGAA
*
76125310 TGGCACTACTTGTGTG-G-ATTAGGAA
1 TGGCACTA--TGTGTGCGAATT-TGAA
76125335 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
76125350 TGTTAGCGTG
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
22 6 0.08
23 1 0.01
24 58 0.77
25 4 0.05
26 6 0.08
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGAA
Found at i:76125309 original size:48 final size:49
Alignment explanation
Indices: 76125238--76125349 Score: 183
Period size: 48 Copynumber: 2.3 Consensus size: 49
76125228 GAAATGACAT
* *
76125238 TGGCACTATGTGTGCGAATTTGAATGGCACTATTTGTATGGATT-TGAA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTACTTGTATGGATTAGGAA
*
76125286 TGGCACTATGTGTGCGAATTTGAATGGCACTACTTGTGTGGATTAGGAA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTACTTGTATGGATTAGGAA
76125335 -GGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
76125350 TGTTAGCGTG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 57 0.95
49 3 0.05
ACGTcount: A:0.23, C:0.12, G:0.30, T:0.34
Consensus pattern (49 bp):
TGGCACTATGTGTGCGAATTTGAATGGCACTACTTGTATGGATTAGGAA
Found at i:76126153 original size:9 final size:8
Alignment explanation
Indices: 76126138--76126162 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76126128 ATAGGTCACT
76126138 TAAAAAAA
1 TAAAAAAA
76126146 TAAAAAAA
1 TAAAAAAA
76126154 TAAAAAAA
1 TAAAAAAA
76126162 T
1 T
76126163 TTACTTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:76131696 original size:17 final size:17
Alignment explanation
Indices: 76131670--76131703 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76131660 TATATATTAG
*
76131670 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
76131687 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
76131704 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:76133058 original size:24 final size:24
Alignment explanation
Indices: 76133022--76133107 Score: 113
Period size: 24 Copynumber: 3.6 Consensus size: 24
76133012 GAAATGACAT
*
76133022 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTAGAA
*
76133046 TGGCACTACGTGTGCGGATTAGCAA
1 TGGCACTATGTGTGCGGATTAG-AA
*
76133071 -GGCACTATGTGTGC-GAGTTAGCA
1 TGGCACTATGTGTGCGGA-TTAGAA
76133094 TGGCACTATGTGTG
1 TGGCACTATGTGTG
76133108 TGAATTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
23 3 0.05
24 50 0.91
25 2 0.04
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAGAA
Found at i:76133896 original size:10 final size:9
Alignment explanation
Indices: 76133881--76133906 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
76133871 TAGGTCACTT
76133881 AAAAAAATA
1 AAAAAAATA
76133890 AAAAAAATA
1 AAAAAAATA
76133899 AAAAAAAT
1 AAAAAAAT
76133907 TTACTTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:76139203 original size:79 final size:82
Alignment explanation
Indices: 76139092--76139276 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
76139082 GCTACTCGTT
* *
76139092 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
76139155 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
76139172 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
76139235 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
76139252 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76139277 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:76139276 original size:40 final size:40
Alignment explanation
Indices: 76139073--76139276 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
76139063 CGGAATTTAA
** *
76139073 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76139113 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76139153 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76139192 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
76139232 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76139272 CCGGA
1 CCGGA
76139277 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76145087 original size:33 final size:34
Alignment explanation
Indices: 76145050--76145118 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
76145040 AGTTTGGAAA
76145050 AACT-CCAAGTTACTTGCTCTCGGGGCACAACAG
1 AACTCCCAAGTTACTTGCTCTCGGGGCACAACAG
76145083 AACTCCCAAGTTACTTGCTCTCGGGGCACAACAG
1 AACTCCCAAGTTACTTGCTCTCGGGGCACAACAG
76145117 AA
1 AA
76145119 GTCAGAGTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (34 bp):
AACTCCCAAGTTACTTGCTCTCGGGGCACAACAG
Found at i:76147197 original size:79 final size:82
Alignment explanation
Indices: 76147086--76147270 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
76147076 GCTACTCGTT
* *
76147086 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
76147149 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
76147166 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
76147229 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
76147246 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76147271 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:76147270 original size:40 final size:40
Alignment explanation
Indices: 76147067--76147270 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
76147057 CGGAATTTAA
** *
76147067 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76147107 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76147147 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76147186 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
76147226 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76147266 CCGGA
1 CCGGA
76147271 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76162343 original size:68 final size:66
Alignment explanation
Indices: 76162271--76162447 Score: 164
Period size: 67 Copynumber: 2.7 Consensus size: 66
76162261 CATCATGTGT
* * * *
76162271 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCACATGCGTGGAT-CTAGTGAAGGACACC
76162333 ATGTAG
61 ATGTAG
** *
76162339 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCACATGCGTGGCTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGGATCTA-GTGAAGGACACCATGT
76162404 AG
65 AG
* * * * *
76162406 ACAAGAGAGCTACGAGATAAAT-TGGCTAGATCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGG
76162448 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
64 22 0.24
65 5 0.05
66 21 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGGATCTAGTGAAGGACACCATGTA
G
Found at i:76170565 original size:25 final size:23
Alignment explanation
Indices: 76170524--76170572 Score: 55
Period size: 25 Copynumber: 2.0 Consensus size: 23
76170514 ATGAGCATAT
*
76170524 TGATATAGGCTCTTTGAGAGCTTCC
1 TGATATAGGCTCCTTGA-A-CTTCC
76170549 TGATAT-GGCTCGCTTGAACTTCC
1 TGATATAGGCTC-CTTGAACTTCC
76170572 T
1 T
76170573 TTTATATGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 6 0.27
24 6 0.27
25 10 0.45
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.37
Consensus pattern (23 bp):
TGATATAGGCTCCTTGAACTTCC
Found at i:76171858 original size:73 final size:73
Alignment explanation
Indices: 76171752--76171908 Score: 206
Period size: 73 Copynumber: 2.2 Consensus size: 73
76171742 TGTGAACATA
* * * * * *
76171752 GCCTAGCTCACGAGCGTGTGCCTTGGCCTTGTGAACCTTGCACCTAATTAATGCAAGCCAGTATG
1 GCCTAGCACACGAGCGTGTGACTTAGCCGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACG
**
76171817 CTCACTTG
66 CTCACAGG
* * **
76171825 GCCTAGCACACGGGTGTGTGACTTAGCCGTGTGAACCCTGCACCTAATTAATGCAAGTTAGTACG
1 GCCTAGCACACGAGCGTGTGACTTAGCCGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACG
76171890 CTCACAGG
66 CTCACAGG
76171898 GCCTAGCACAC
1 GCCTAGCACAC
76171909 AAACATGTGG
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (73 bp):
GCCTAGCACACGAGCGTGTGACTTAGCCGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACG
CTCACAGG
Found at i:76171930 original size:73 final size:73
Alignment explanation
Indices: 76171768--76171931 Score: 177
Period size: 73 Copynumber: 2.2 Consensus size: 73
76171758 CTCACGAGCG
* * * **
76171768 TGTGCCTTGGCCT-TGTGAACCTTGCACCTAATTAATGCAAGCCAGTATGCTCACTTGGCCTAGC
1 TGTGACTTGG-CTGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACGCTCACAGGGCCTAGC
*****
76171832 ACACGGGTG
65 ACACAAACA
* * **
76171841 TGTGACTTAGCCGTGTGAACCCTGCACCTAATTAATGCAAGTTAGTACGCTCACAGGGCCTAGCA
1 TGTGACTTGGCTGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACGCTCACAGGGCCTAGCA
76171906 CACAAACA
66 CACAAACA
*
76171914 TGTGGCTTGGCTGTGTGA
1 TGTGACTTGGCTGTGTGA
76171932 CTCAAATCAG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
72 1 0.01
73 72 0.99
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (73 bp):
TGTGACTTGGCTGTGTGAACCCTGCACCTAATTAATGCAAGCCAGTACGCTCACAGGGCCTAGCA
CACAAACA
Found at i:76176581 original size:46 final size:46
Alignment explanation
Indices: 76176528--76176646 Score: 202
Period size: 46 Copynumber: 2.6 Consensus size: 46
76176518 ACATCTCTCA
* *
76176528 CATTAGCCATTTGGCTTTACCACATATCCATCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCG
* *
76176574 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACATTTTG
1 CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCG
76176620 CATTAGCCATTCGGCTTTACCACATAT
1 CATTAGCCATTCGGCTTTACCACATAT
76176647 ATACACTTCC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCACATATCCATCTCATACACATTTCG
Found at i:76176691 original size:47 final size:47
Alignment explanation
Indices: 76176620--76177044 Score: 584
Period size: 47 Copynumber: 9.1 Consensus size: 47
76176610 ACACATTTTG
* * * * * * *
76176620 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
** **
76176667 CATTGGCCATTTTGCCTTATCACATATATGCAT-TTGTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76176713 CATTGGCCATTCGGCCTTATCACATATAGGCATGTTCTCATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76176760 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76176807 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCG
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
76176854 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCG
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
76176901 TATTGGCCATTCGACCTTATCACATAAATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76176948 CATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
76176995 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
76177042 CAT
1 CAT
76177045 AAAATCCTAA
Statistics
Matches: 340, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
46 39 0.11
47 301 0.89
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:76181556 original size:46 final size:45
Alignment explanation
Indices: 76181503--76181678 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
76181493 TATTTGGGCA
*
76181503 TCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
76181549 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
76181596 TCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
76181642 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76181679 GCAGGATACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:76181658 original size:93 final size:93
Alignment explanation
Indices: 76181499--76181670 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
76181489 AGGATATTTG
* * *
76181499 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76181564 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
76181592 GGCATCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTAAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76181657 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76181671 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76184665 original size:15 final size:15
Alignment explanation
Indices: 76184645--76184713 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
76184635 GTATCTTAGG
76184645 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
76184660 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
76184675 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
76184690 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
76184705 TTTCTTTAT
1 TTTCTTTAT
76184714 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:76184714 original size:30 final size:30
Alignment explanation
Indices: 76184636--76184723 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
76184626 CATAGTATAG
* * *
76184636 TATCTTAGG-TTTCTTTATCCTGGATCTCTT
1 TATCTT-GGATTTCTTTATTCTGGATTTCTC
*
76184666 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
76184696 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
76184724 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.20
30 39 0.78
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:76186718 original size:46 final size:45
Alignment explanation
Indices: 76186665--76186836 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
76186655 TATTTGGGCA
*
76186665 TCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
76186711 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
76186758 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
76186804 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
76186837 GTGGGCGGGT
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.60
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:76186820 original size:93 final size:93
Alignment explanation
Indices: 76186661--76186832 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76186651 AGGATATTTG
* *
76186661 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76186726 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
76186754 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
76186819 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
76186833 ACTTGTGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:76191562 original size:11 final size:11
Alignment explanation
Indices: 76191546--76191584 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
76191536 AGAGAATCAA
76191546 ATTATAATTTT
1 ATTATAATTTT
*
76191557 ATTATAAATTT
1 ATTATAATTTT
76191568 ATTTATAATTTT
1 A-TTATAATTTT
76191580 ATTAT
1 ATTAT
76191585 TGGGAGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTATAATTTT
Found at i:76191573 original size:12 final size:12
Alignment explanation
Indices: 76191547--76191582 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
76191537 GAGAATCAAA
76191547 TTATAATTTTA-
1 TTATAATTTTAT
*
76191558 TTATAAATTTAT
1 TTATAATTTTAT
76191570 TTATAATTTTAT
1 TTATAATTTTAT
76191582 T
1 T
76191583 ATTGGGAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATAATTTTAT
Found at i:76191812 original size:94 final size:92
Alignment explanation
Indices: 76191648--76191824 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 92
76191638 TTTTCCCTCT
* * * * *
76191648 TGAGTATGATATTGGTTACCGTGCTTGATATGCTCAATGGCTTTCACGATTCCTTAGACTTCCTT
1 TGAGTATGATATTAGTTACCATGCTTGATATGCACAATGGCTTCCACGATTCCTTAGACTTCCAT
*
76191713 CGACAGTTTAGAAAAAGACATTGCATC
66 CGACAGTCTAGAAAAAGACATTGCATC
* *
76191740 TGAGTATGATATTAGTTACCATATGCTTGATATGCACAGTGGCTTCCAC-ATCTCCTTAGAGTTC
1 TGAGTATGATATTAGTTACC--ATGCTTGATATGCACAATGGCTTCCACGAT-TCCTTAGACTTC
*
76191804 CATGGACAGTCTAGAAAAAGA
63 CATCGACAGTCTAGAAAAAGA
76191825 AACTGCCGTG
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 19 0.26
93 2 0.03
94 52 0.71
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (92 bp):
TGAGTATGATATTAGTTACCATGCTTGATATGCACAATGGCTTCCACGATTCCTTAGACTTCCAT
CGACAGTCTAGAAAAAGACATTGCATC
Found at i:76192542 original size:14 final size:14
Alignment explanation
Indices: 76192525--76192560 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
76192515 ATAAAAATAT
76192525 TTTTTATGATTTTA
1 TTTTTATGATTTTA
76192539 TTTTTATGATTTTA
1 TTTTTATGATTTTA
76192553 TATTTTAT
1 T-TTTTAT
76192561 ATAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (14 bp):
TTTTTATGATTTTA
Found at i:76210916 original size:19 final size:19
Alignment explanation
Indices: 76210874--76210924 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
76210864 TTAATGGTGT
**
76210874 TTGATTAGTGGAATTATGA
1 TTGATTAGTGGAACCATGA
76210893 TTGATTAGTGGAACCATG-
1 TTGATTAGTGGAACCATGA
*
76210911 TGTGATTAATGGAA
1 T-TGATTAGTGGAA
76210925 TTGTGTTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 1 0.04
19 27 0.96
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.37
Consensus pattern (19 bp):
TTGATTAGTGGAACCATGA
Found at i:76212933 original size:33 final size:34
Alignment explanation
Indices: 76212887--76212957 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
76212877 AACAGTCCAG
*
76212887 TATCAGTTAGGGCCTTAGCTC-ATTCAGTAACAA
1 TATCAGTTAGGGCCTTAGCCCAATTCAGTAACAA
*
76212920 TATCAGTGT-GGGCCTTAGCCCAATTCAGTAACAG
1 TATCAGT-TAGGGCCTTAGCCCAATTCAGTAACAA
76212954 TATC
1 TATC
76212958 TGTGCAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 18 0.53
34 16 0.47
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (34 bp):
TATCAGTTAGGGCCTTAGCCCAATTCAGTAACAA
Found at i:76217169 original size:94 final size:94
Alignment explanation
Indices: 76217035--76217207 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 94
76217025 GCCACAACAT
* * * * * **
76217035 GAGAGCCAGTGTAAGACATGTTTGGGACATGCTTCGGCCTCGAGATATTTAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAGAC
76217100 ATGTCTAGAACATGCATCGATATTGAGAC
66 ATGTCTAGAACATGCATCGATATTGAGAC
* * *
76217129 GAGAGCTAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGCGATATACAAGCTAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAGAC
* *
76217194 CTGTCTAGGACATG
66 ATGTCTAGAACATG
76217208 GCGTCAGCTT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 67 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTAGGAAATGCATCAGCCTCGAGATATACAAGCCAGTGTAAGAC
ATGTCTAGAACATGCATCGATATTGAGAC
Found at i:76217287 original size:49 final size:49
Alignment explanation
Indices: 76217228--76217352 Score: 171
Period size: 49 Copynumber: 2.5 Consensus size: 49
76217218 GTTGTGTGTT
* * *
76217228 AGTGTAAGACCTGTCTGGGACATGGCATTGA-CATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCA-TCATCACCGATACATGAGAGCC
* * *
76217277 AGTGTAAGACCTGTTTGGGACATGGCATCATCCCCGCTACATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCATCACCGATACATGAGAGCC
76217326 AGTGTAAGACCGTGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
76217353 GTCGGCATAT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
48 2 0.03
49 51 0.76
50 14 0.21
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCATCACCGATACATGAGAGCC
Found at i:76218557 original size:21 final size:20
Alignment explanation
Indices: 76218521--76218562 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
76218511 CATGTAAAAG
*
76218521 TTCCACACGTGCGTGTTGCCC
1 TTCCACACGAGCGTG-TGCCC
*
76218542 TTCCACACGAGTGTGTGCCC
1 TTCCACACGAGCGTGTGCCC
76218562 T
1 T
76218563 GTTTCAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.12, C:0.36, G:0.24, T:0.29
Consensus pattern (20 bp):
TTCCACACGAGCGTGTGCCC
Found at i:76229308 original size:40 final size:39
Alignment explanation
Indices: 76229252--76229388 Score: 195
Period size: 40 Copynumber: 3.5 Consensus size: 39
76229242 GGATGATAAC
*
76229252 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76229291 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 C-GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76229331 CCGGGCTAAGTCCCGAAGGCAATTGAGCGAG-TAGCTATAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
76229371 CCGGCTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
76229389 TAATTGGTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.21
40 70 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76237225 original size:40 final size:40
Alignment explanation
Indices: 76237170--76237387 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
76237160 CGGATGATAA
76237170 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
76237210 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76237250 CCGGGCTAAGTTCCGAAGGCATTTTTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
76237290 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
76237330 CCGGGCTAAGTCCCGAAGGCAGTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
76237370 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
76237388 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 16 0.10
40 149 0.90
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:76242368 original size:40 final size:40
Alignment explanation
Indices: 76242219--76242361 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
76242209 AATGATGTCT
* * * *
76242219 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
76242259 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATTC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
76242299 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
76242339 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76242362 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 77 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:76242670 original size:38 final size:40
Alignment explanation
Indices: 76242626--76242855 Score: 136
Period size: 49 Copynumber: 5.0 Consensus size: 40
76242616 CGATGTGATG
76242626 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-----GA
76242671 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 --AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-----GA
*
76242718 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 --AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-----GA
*
76242767 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 --AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-----GA
* *
76242816 TGAATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCC
1 --AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
76242856 AACGTGATGG
Statistics
Matches: 175, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
47 81 0.46
49 94 0.54
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (40 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGA
Found at i:76242757 original size:49 final size:47
Alignment explanation
Indices: 76242579--76242890 Score: 498
Period size: 47 Copynumber: 6.6 Consensus size: 47
76242569 AAGGGTTGGT
*
76242579 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
76242626 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76242673 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76242720 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
*
76242769 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATG
* * * *
76242818 AATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
* *
76242865 GATGTGAAAGTGTATAAATGTGATAA
1 AATGTGAAAGTGTATATATGTGATAA
76242891 TTCCCGAAGG
Statistics
Matches: 250, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 156 0.62
49 94 0.38
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
Found at i:76246336 original size:13 final size:13
Alignment explanation
Indices: 76246318--76246344 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76246308 TTTCACTTTA
76246318 TGGCGTGCTCGTT
1 TGGCGTGCTCGTT
76246331 TGGCGTGCTCGTT
1 TGGCGTGCTCGTT
76246344 T
1 T
76246345 TATGGCTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.22, G:0.37, T:0.41
Consensus pattern (13 bp):
TGGCGTGCTCGTT
Found at i:76247932 original size:39 final size:40
Alignment explanation
Indices: 76247869--76248093 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
76247859 GCTCCTCGTT
* * * *
76247869 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
76247909 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
76247948 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
76247988 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
76248028 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
76248069 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
76248094 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 104 0.66
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:76248102 original size:41 final size:41
Alignment explanation
Indices: 76248025--76248102 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
76248015 TTTGTATCTC
* * *
76248025 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
76248066 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
76248103 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:76252560 original size:30 final size:30
Alignment explanation
Indices: 76252526--76252586 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76252516 TCCTTAACTC
76252526 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76252556 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76252586 A
1 A
76252587 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76253467 original size:27 final size:27
Alignment explanation
Indices: 76253406--76253498 Score: 91
Period size: 27 Copynumber: 3.5 Consensus size: 27
76253396 GTACCCCCGG
* * **
76253406 TTTAT-AAATTACCCAAATATCCTTGA
1 TTTATAAAATTACCGAAATACCCTCAA
* *
76253432 TTTGTAAAATTACCGAAATACCCTCAG
1 TTTATAAAATTACCGAAATACCCTCAA
**
76253459 TTT-TCAAAATTATTGAAATACCCTCAA
1 TTTAT-AAAATTACCGAAATACCCTCAA
76253486 TTTATAAAATTAC
1 TTTATAAAATTAC
76253499 TGAATACTCT
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
26 5 0.09
27 48 0.89
28 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (27 bp):
TTTATAAAATTACCGAAATACCCTCAA
Found at i:76253586 original size:26 final size:26
Alignment explanation
Indices: 76253411--76253587 Score: 86
Period size: 27 Copynumber: 6.7 Consensus size: 26
76253401 CCCGGTTTAT
* * **
76253411 AAATTACCCAAATATCCTTGATTTGTA
1 AAATTACCGAAATA-CCCTGATTTACA
* *
76253438 AAATTACCGAAATACCCTCAGTTTTCA
1 AAATTACCGAAATACCCTGA-TTTACA
** * *
76253465 AAATTATTGAAATACCCTCAATTTATA
1 AAATTACCGAAATACCCT-GATTTACA
* * * **
76253492 AAATTACTG-AATACTCTCGACTTGTA
1 AAATTACCGAAATACCCT-GATTTACA
* * *
76253518 AAATTATCAAAAGTACCCCGATTTACA
1 AAATTACCGAAA-TACCCTGATTTACA
* ***
76253545 GAATTACCGTTTTACCCTGATTTACA
1 AAATTACCGAAATACCCTGATTTACA
**
76253571 AAATTATTGAAATACCC
1 AAATTACCGAAATACCC
76253588 CTGTAGGGTA
Statistics
Matches: 110, Mismatches: 36, Indels: 9
0.71 0.23 0.06
Matches are distributed among these distances:
26 47 0.43
27 58 0.53
28 5 0.05
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.33
Consensus pattern (26 bp):
AAATTACCGAAATACCCTGATTTACA
Found at i:76253614 original size:53 final size:51
Alignment explanation
Indices: 76253557--76253878 Score: 180
Period size: 53 Copynumber: 6.1 Consensus size: 51
76253547 ATTACCGTTT
* *
76253557 TACCCTGATTTACAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 TACCCTGATGTA-AAAATTACTGAAATA-CCCTGTAGGGTAGAATTACCGAAA
* * * *
76253610 TACCCT-ATAAGGTAGAAA-TACCGAAATACCTTGTAGGGTAGAAATACCGAAA
1 TACCCTGAT---GTAAAAATTACTGAAATACCCTGTAGGGTAGAATTACCGAAA
* * *
76253662 TACCCCTGTAGGGT-AGAATTACTGAAATACCCTGTAGGGTAGAATTATCGAAA
1 TA-CCCTG-A-TGTAAAAATTACTGAAATACCCTGTAGGGTAGAATTACCGAAA
* * * **
76253715 TACCCTTATAGGGT-AAAA-TACCG-AATACCCCTGTAGGGAAGAA-TATTGAAA
1 TACCCTGAT---GTAAAAATTACTGAAATA-CCCTGTAGGGTAGAATTACCGAAA
* * * * * *
76253766 TACCCCTGTAGGGTAGATATTACCGAAA-ATCCCTTGTACGGTAGAAATACCGAAA
1 TA-CCCTG-A-TGTAAAAATTACTGAAATA-CCC-TGTAGGGTAGAATTACCGAAA
* * *
76253821 TACCCCTGTAGGT-AGAATTATTG-AATACCC-GTATGGGTAGAATTACCGAAA
1 TA-CCCTG-ATGTAAAAATTACTGAAATACCCTGTA-GGGTAGAATTACCGAAA
76253872 TACCCTG
1 TACCCTG
76253879 TAGGGTAGAA
Statistics
Matches: 212, Mismatches: 35, Indels: 47
0.72 0.12 0.16
Matches are distributed among these distances:
50 8 0.04
51 33 0.16
52 61 0.29
53 73 0.34
54 18 0.08
55 19 0.09
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (51 bp):
TACCCTGATGTAAAAATTACTGAAATACCCTGTAGGGTAGAATTACCGAAA
Found at i:76253623 original size:26 final size:26
Alignment explanation
Indices: 76253579--76253918 Score: 354
Period size: 26 Copynumber: 13.0 Consensus size: 26
76253569 CAAAATTATT
76253579 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATA-CCCTGTAGGGTAGAATTACC
* * *
76253606 GAAATACCCTATAAGGTAGAAATACC
1 GAAATACCCTGTAGGGTAGAATTACC
* *
76253632 GAAATACCTTGTAGGGTAGAAATACC
1 GAAATACCCTGTAGGGTAGAATTACC
*
76253658 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATA-CCCTGTAGGGTAGAATTACC
*
76253685 GAAATACCCTGTAGGGTAGAATTATC
1 GAAATACCCTGTAGGGTAGAATTACC
* *
76253711 GAAATACCCTTATAGGGTA-AAATACC
1 GAAATACCC-TGTAGGGTAGAATTACC
* **
76253737 G-AATACCCCTGTAGGGAAGAA-TATT
1 GAAATA-CCCTGTAGGGTAGAATTACC
76253762 GAAATACCCCTGTAGGGTAGATATTACC
1 GAAATA-CCCTGTAGGGTAGA-ATTACC
* *
76253790 GAAA-ATCCCTTGTACGGTAGAAATACC
1 GAAATA-CCC-TGTAGGGTAGAATTACC
**
76253817 GAAATACCCCTGTA-GGTAGAATTATT
1 GAAATA-CCCTGTAGGGTAGAATTACC
76253843 G-AATACCC-GTATGGGTAGAATTACC
1 GAAATACCCTGTA-GGGTAGAATTACC
76253868 GAAATACCCTGTAGGGTAGAATTACC
1 GAAATACCCTGTAGGGTAGAATTACC
* * *
76253894 GAGATA-CCTCGTGGGGTAAAATTAC
1 GAAATACCCT-GTAGGGTAGAATTAC
76253919 ATTTTGCCCG
Statistics
Matches: 266, Mismatches: 33, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
23 3 0.01
24 3 0.01
25 32 0.12
26 150 0.56
27 58 0.22
28 20 0.08
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (26 bp):
GAAATACCCTGTAGGGTAGAATTACC
Found at i:76253632 original size:79 final size:79
Alignment explanation
Indices: 76253579--76253918 Score: 336
Period size: 79 Copynumber: 4.3 Consensus size: 79
76253569 CAAAATTATT
*
76253579 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAAATACCTTGT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAAATACCCTGT
*
76253644 AGGGTAGAAATACC
66 AGGGTAAAAATACC
* * * * * *
76253658 GAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAGGGTAGAATTATCGAAATACCCTTA
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAAATACCC-TG
76253723 TAGGGT-AAAATACC
65 TAGGGTAAAAATACC
* ** * * *
76253737 G-AATACCCCTGTAGGGAAGAA-TATTGAAATACCCCTGTAGGGTAGATATTACCGAAA-ATCCC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTATAAGGTAGA-AATACCGAAATA-CCC
* *
76253799 TTGTACGGTAGAAATACC
63 -TGTAGGGTAAAAATACC
** * *
76253817 GAAATACCCCTGTA-GGTAGAATTATTG-AATACCCGTAT-GGGTAGAATTACCGAAATACCCTG
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCC-TATAAGGTAGAAATACCGAAATACCCTG
* *
76253879 TAGGGTAGAATTACC
65 TAGGGTAAAAATACC
* * * *
76253894 GAGATACCTC-GTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
76253919 ATTTTGCCCG
Statistics
Matches: 228, Mismatches: 23, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
76 2 0.01
77 41 0.18
78 47 0.21
79 94 0.41
80 27 0.12
81 17 0.07
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (79 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAAATACCCTGT
AGGGTAAAAATACC
Found at i:76253706 original size:105 final size:104
Alignment explanation
Indices: 76253579--76253918 Score: 379
Period size: 105 Copynumber: 3.2 Consensus size: 104
76253569 CAAAATTATT
76253579 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAAATACCTTGT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCG-AATACC-TGT
*
76253644 AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACT
64 AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
* *
76253685 GAAATA-CCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTA-AAATACCGAATACCCCTG
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCC-TATAAGGTAGAAATACCGAATA--CCTG
* **
76253748 TAGGGAAG-AATATTGAAATACCCCTGTAGGGTAGATATTACC
63 TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGA-ATTACC
* * * * * ** *
76253790 GAAA-ATCCCTTGTACGGTAGAAATACCGAAATACCCCTGT-AGGTAGAATTATTGAATACCCGT
1 GAAATA-CCCCTGTAGGGTAGAATTACCGAAATA-CCCTATAAGGTAGAAATACCGAATACCTGT
*
76253853 ATGGGTAGAATTACCGAAATA-CCCTGTAGGGTAGAATTACC
64 A-GGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
* * * *
76253894 GAGATACCTC-GTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
76253919 ATTTTGCCCG
Statistics
Matches: 196, Mismatches: 27, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
103 11 0.06
104 46 0.23
105 78 0.40
106 58 0.30
107 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (104 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTATAAGGTAGAAATACCGAATACCTGTAG
GGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
Found at i:76276569 original size:43 final size:42
Alignment explanation
Indices: 76276520--76276688 Score: 171
Period size: 43 Copynumber: 4.0 Consensus size: 42
76276510 TAGGATTTCT
* * *
76276520 GATATGTGTTCTCGTGTAAGACCACGTATGGGACATTGGCATC
1 GATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCATC
* *
76276563 GATATGTTATTACATGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATT-CATGTAAGACCACGTCTGGGACATTGGCATC
* * * *
76276606 GA-ATTTGATTCGTGTAAGACC-CTGTCCGGGACAGTGGCATC
1 GATATGTGATTCATGTAAGACCAC-GTCTGGGACATTGGCATC
* * **
76276647 AATATGTGATGGCATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATGTGAT-TCATGTAAGACCACGTCTGGGACATTGGCAT
76276689 TGTACGATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
41 27 0.26
42 13 0.13
43 61 0.60
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
GATATGTGATTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:76276676 original size:84 final size:84
Alignment explanation
Indices: 76276531--76276688 Score: 210
Period size: 84 Copynumber: 1.9 Consensus size: 84
76276521 ATATGTGTTC
* * * * * *
76276531 TCGTGTAAGACCACGTATGGGACATTGGCATCGATATGTTATTACATGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTACGGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGGGA
76276596 CATTGGCATCGAATTTGAT
66 CATTGGCATCGAATTTGAT
* *
76276615 TCGTGTAAGACC-CTGTCCGGGACAGTGGCATCAATATGTGATGGCATGTAAGACCACGTCTGGG
1 TCGTGTAAGACCAC-GTACGGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGGG
**
76276679 ATGTTGGCAT
65 ACATTGGCAT
76276689 TGTACGATAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
83 1 0.02
84 62 0.98
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (84 bp):
TCGTGTAAGACCACGTACGGGACAGTGGCATCAATATGTGATGACATGTAAGACCACGTCTGGGA
CATTGGCATCGAATTTGAT
Found at i:76280937 original size:29 final size:31
Alignment explanation
Indices: 76280888--76280946 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
76280878 AATGTGTATC
* *
76280888 TATTTATTTGATGGATGAAAT-T-GAGATAA
1 TATTTATTTAATAGATGAAATGTGGAGATAA
76280917 TATTTATTCTAATAGAT-AAATGTGGAGATA
1 TATTTATT-TAATAGATGAAATGTGGAGATA
76280947 TTAAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.48
30 7 0.28
31 6 0.24
ACGTcount: A:0.39, C:0.02, G:0.19, T:0.41
Consensus pattern (31 bp):
TATTTATTTAATAGATGAAATGTGGAGATAA
Found at i:76283125 original size:17 final size:17
Alignment explanation
Indices: 76283085--76283128 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
76283075 GGGATAAAAA
76283085 GATTGAA-GT-TG-AAT
1 GATTGAATGTATGAAAT
*
76283099 GA-TGATTGTATGAAAT
1 GATTGAATGTATGAAAT
76283115 GATTGAATGTATGA
1 GATTGAATGTATGA
76283129 GAAAAGTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 3 0.12
14 4 0.17
15 2 0.08
16 5 0.21
17 10 0.42
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (17 bp):
GATTGAATGTATGAAAT
Found at i:76283348 original size:36 final size:36
Alignment explanation
Indices: 76283307--76283378 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
76283297 CTGTGATAGT
*
76283307 GTGATGAATCTTGACATTATAAACTATGATTCCATA
1 GTGATGAATCCTGACATTATAAACTATGATTCCATA
76283343 GTGATGAATCCTGACATTATAAACTATGATTCCATA
1 GTGATGAATCCTGACATTATAAACTATGATTCCATA
76283379 TAGTAATAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (36 bp):
GTGATGAATCCTGACATTATAAACTATGATTCCATA
Found at i:76286356 original size:79 final size:81
Alignment explanation
Indices: 76286220--76286402 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
76286210 TCGAATGATG
* *
76286220 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76286284 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76286299 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76286361 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76286379 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76286403 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76286418 original size:40 final size:40
Alignment explanation
Indices: 76286221--76286404 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
76286211 CGAATGATGT
* * * *
76286221 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76286261 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
76286301 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76286339 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76286380 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76286405 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76286426 original size:79 final size:79
Alignment explanation
Indices: 76286273--76286437 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
76286263 GGACTAAGAT
* **
76286273 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
76286338 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76286352 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
76286415 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76286431 CCGAAGG
1 CCGAAGG
76286438 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76294591 original size:40 final size:41
Alignment explanation
Indices: 76294393--76294577 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
76294383 TCGAATGATG
* * * *
76294393 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
76294433 TCCGGACTAA-TATCCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTATAA
*
76294473 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76294512 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76294553 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76294578 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 78 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76294610 original size:79 final size:79
Alignment explanation
Indices: 76294432--76294584 Score: 184
Period size: 79 Copynumber: 1.9 Consensus size: 79
76294422 AAGTGACCAT
* *
76294432 ATCCGGACTAATAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGATTAA-ATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
**
76294496 GGTGCGAGTTACTAA
65 GGAACGAGTTACTAA
* * * *
76294511 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
76294575 TTGAACGAGT
64 TGGAACGAGT
76294585 AGCTATATCT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
78 3 0.05
79 41 0.66
80 18 0.29
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGATTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTG
GAACGAGTTACTAA
Found at i:76299392 original size:99 final size:99
Alignment explanation
Indices: 76299221--76299418 Score: 387
Period size: 99 Copynumber: 2.0 Consensus size: 99
76299211 CATCGGGCAG
76299221 TATGAAATCATTGAAAGAATAGGGCCAGTAGCATATCGACTATCTCTACCATTAGAGTTAGTGTA
1 TATGAAATCATTGAAAGAATAGGGCCAGTAGCATATCGACTATCTCTACCATTAGAGTTAGTGTA
*
76299286 ATGCCCCAAAAGTCCCAAAATCCAAAAATCCCAA
66 ATGCCCCAAAAGCCCCAAAATCCAAAAATCCCAA
76299320 TATGAAATCATTGAAAGAATAGGGCCAGTAGCATATCGACTATCTCTACCATTAGAGTTAGTGTA
1 TATGAAATCATTGAAAGAATAGGGCCAGTAGCATATCGACTATCTCTACCATTAGAGTTAGTGTA
76299385 ATGCCCCAAAAGCCCCAAAATCCAAAAATCCCAA
66 ATGCCCCAAAAGCCCCAAAATCCAAAAATCCCAA
76299419 AATGCATAAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (99 bp):
TATGAAATCATTGAAAGAATAGGGCCAGTAGCATATCGACTATCTCTACCATTAGAGTTAGTGTA
ATGCCCCAAAAGCCCCAAAATCCAAAAATCCCAA
Found at i:76300845 original size:28 final size:29
Alignment explanation
Indices: 76300805--76300919 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
76300795 GTGAGCATGA
* * *
76300805 ATATGAATGTGA-TTAGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
76300833 ATATAAATGTGATTTGGGTCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
76300862 ATA-AATAGGTGATTTGGGCCTAATGGGCC
1 ATATAA-ATGTGATTTGGGCCTAATGGGCC
* * * *
76300891 ATATGAATATTA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
76300919 A
1 A
76300920 GATACAGGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 29 0.40
29 43 0.59
30 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:76303060 original size:50 final size:50
Alignment explanation
Indices: 76302952--76303136 Score: 237
Period size: 50 Copynumber: 3.7 Consensus size: 50
76302942 CTGGTACGCA
*
76302952 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * *
76303001 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
* * * * ** *
76303051 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-TTATCCGGTACACG
* *
76303102 TAGTAGCATGCACTTAGTACTACACATGCGACCTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTA
76303137 GCTACATATA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 31 0.26
50 48 0.41
51 39 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCCGGTACACG
Found at i:76303135 original size:101 final size:99
Alignment explanation
Indices: 76302952--76303136 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 99
76302942 CTGGTACGCA
* * *
76302952 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCATGCACTTA
*
76303017 GTACTACACACGTGACCTAATTATCTGATACACG
66 GTACTACACACGCGACCTAATTATCTGATACACG
* * * **
76303051 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTATGCATAGTAGCATGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCATGCACT
*
76303116 TAGTACTACACATGCGACCTA
64 TAGTACTACACACGCGACCTA
76303137 GCTACATATA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCATGCACTTA
GTACTACACACGCGACCTAATTATCTGATACACG
Found at i:76303975 original size:30 final size:30
Alignment explanation
Indices: 76303941--76304001 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76303931 TTCTTAACTC
*
76303941 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTCTGCAAAATTACAATTTTGCCCCT
* * * *
76303971 AAACTTCTGCATATTTACACTTTTTCCCCT
1 AAACTTCTGCAAAATTACAATTTTGCCCCT
76304001 A
1 A
76304002 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTCTGCAAAATTACAATTTTGCCCCT
Found at i:76305893 original size:27 final size:26
Alignment explanation
Indices: 76305839--76305889 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
76305829 TCCCTTATTT
76305839 GAGTCTACGAGCCCAAAACATACTTA
1 GAGTCTACGAGCCCAAAACATACTTA
76305865 GAGTCTACGAAG-CCAAAACATACTT
1 GAGTCTACG-AGCCCAAAACATACTT
76305890 TAGAAAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.20
Consensus pattern (26 bp):
GAGTCTACGAGCCCAAAACATACTTA
Found at i:76317924 original size:46 final size:45
Alignment explanation
Indices: 76317781--76317924 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 45
76317771 CCCGCCCATA
*
76317781 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
76317830 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
76317873 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
76317920 AGTGA
1 AGTGA
76317925 CATGTCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 23
0.74 0.05 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 34 0.43
47 29 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:76321717 original size:46 final size:46
Alignment explanation
Indices: 76321650--76321872 Score: 299
Period size: 46 Copynumber: 4.8 Consensus size: 46
76321640 ATGTAACCCG
* * *
76321650 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
* *
76321696 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A
* ***
76321740 GTTACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
1 --TCCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
*
76321789 TCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
76321835 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
76321873 TGCTCAACCA
Statistics
Matches: 156, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 115 0.74
47 32 0.21
49 4 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCA
Found at i:76323300 original size:29 final size:29
Alignment explanation
Indices: 76323263--76323365 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
76323253 ATGAATGTGA
*
76323263 TTGGGCCTAACGGGCCATATAAATATGAT
1 TTGGGCCTAATGGGCCATATAAATATGAT
* **
76323292 TTGGGCCTAATGGGCCATATACAGGTGAT
1 TTGGGCCTAATGGGCCATATAAATATGAT
*
76323321 TTGGGCCTAATGGGCCATATGAATATGA-
1 TTGGGCCTAATGGGCCATATAAATATGAT
76323349 TTGGGCCTAATGGGCCA
1 TTGGGCCTAATGGGCCA
76323366 GATACAGGTA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 17 0.26
29 49 0.74
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATAAATATGAT
Found at i:76323360 original size:57 final size:57
Alignment explanation
Indices: 76323259--76323374 Score: 189
Period size: 57 Copynumber: 2.0 Consensus size: 57
76323249 GAATATGAAT
*
76323259 GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
* *
76323316 GTGATTTGGGCCTAATGGGCCATATGAATATGA-TTGGGCCTAATGGGCCAGATACAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
76323373 GT
1 GT
76323375 ATGTGAAATT
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 29 0.53
58 26 0.47
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
Found at i:76323698 original size:25 final size:25
Alignment explanation
Indices: 76323648--76323698 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
76323638 AAACCGTAAT
* *
76323648 TAAGGGAAAATTACCAAAATGCCCC
1 TAAGGGAAAATGACCAAAATGACCC
76323673 TAAGGGAAAAATGACCAAAAT-ACCC
1 TAAGGG-AAAATGACCAAAATGACCC
76323698 T
1 T
76323699 TAGGTGTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (25 bp):
TAAGGGAAAATGACCAAAATGACCC
Found at i:76331695 original size:36 final size:32
Alignment explanation
Indices: 76331641--76331705 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 32
76331631 CCCATGTCTC
*
76331641 AATTTTGGAAACTGATGATGATTTTGTGTTTTGA
1 AATTTTGAAAACTGATGAT--TTTTGTGTTTTGA
76331675 AATTGTTGAAAACTTGATGATTTTTGTGTTT
1 AATT-TTGAAAAC-TGATGATTTTTGTGTTT
76331706 GATGATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 14 0.50
35 7 0.25
36 7 0.25
ACGTcount: A:0.26, C:0.03, G:0.22, T:0.49
Consensus pattern (32 bp):
AATTTTGAAAACTGATGATTTTTGTGTTTTGA
Found at i:76333844 original size:47 final size:46
Alignment explanation
Indices: 76333773--76333991 Score: 143
Period size: 46 Copynumber: 4.8 Consensus size: 46
76333763 GGTAAGGTGC
* *
76333773 CGATGCCATGTTCCGAACACGGTCTTACACTGGCTCACATCTCAAGT
1 CGATGCCATG-TCCCAACATGGTCTTACACTGGCTCACATCTCAAGT
* * *
76333820 CGATGCCATGTCCCATACATGGTCTTACATTGACT-ATCATCTCGTAGT
1 CGATGCCATGTCCCA-ACATGGTCTTACACTGGCTCA-CATCTC-AAGT
* * * * **
76333868 CGATG-CATGTCCTAAACAT-GTCATACACTGGCTTA-TTCCTTGAGCT
1 CGATGCCATGTCC-CAACATGGTCTTACACTGGCTCACAT-CTCAAG-T
* * *
76333914 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCATCTCAACG-
1 CGATGCCATGTCCCA-ACATGGTCTTACACTGGCTCACATCTCAA-GT
*
76333959 CTGAAGCCATGT-CC--CATGGTCTTACACTGGCTC
1 C-GATGCCATGTCCCAACATGGTCTTACACTGGCTC
76333992 TCATAATGTG
Statistics
Matches: 135, Mismatches: 24, Indels: 29
0.72 0.13 0.15
Matches are distributed among these distances:
43 3 0.02
44 13 0.10
45 5 0.04
46 54 0.40
47 51 0.38
48 9 0.07
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAACATGGTCTTACACTGGCTCACATCTCAAGT
Found at i:76337913 original size:49 final size:49
Alignment explanation
Indices: 76337840--76338083 Score: 308
Period size: 49 Copynumber: 4.9 Consensus size: 49
76337830 GTAGCCGAAG
* * *
76337840 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
76337889 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
* * * * *
76337939 CCATCTGATACATGTAGTAGCCTACACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * * * * **
76337989 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
*
76338039 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
76338084 ACTCACAATA
Statistics
Matches: 162, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.49
50 47 0.29
51 35 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:76338023 original size:101 final size:98
Alignment explanation
Indices: 76337854--76338083 Score: 325
Period size: 100 Copynumber: 2.3 Consensus size: 98
76337844 CTGGTACGCA
* * *
76337854 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
** * *
76337919 GTACTACACACGTGACCTAACCATCTGATACATG
66 GTACTACACACGCAACC-AACAATCTGATACACG
* * *
76337953 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* *
76338018 TAGTACTACACATGCAACCAACAATCTGGTACACG
64 TAGTACTACACACGCAACCAACAATCTGATACACG
76338053 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
76338084 ACTCACAATA
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 29 0.25
100 46 0.40
101 41 0.35
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCAACCAACAATCTGATACACG
Found at i:76338766 original size:30 final size:30
Alignment explanation
Indices: 76338732--76338791 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76338722 CTTTAATACG
76338732 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
76338762 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
76338792 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:76344487 original size:30 final size:30
Alignment explanation
Indices: 76344442--76344501 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
76344432 ATTTAATATG
*
76344442 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
76344472 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
76344502 GGCTTAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:76348092 original size:41 final size:41
Alignment explanation
Indices: 76348033--76348314 Score: 406
Period size: 41 Copynumber: 6.9 Consensus size: 41
76348023 ATAAAACACG
* ** *
76348033 GAGCAATAGCGGCATTTTTGGTAAAACGCTGCTAAAAA-CA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
* ** * *
76348073 GAGCAATAGCGGCATTTTTTGGTAAAACACCGCTAAAAA-TA
1 GAGCATTAGCGGC-GCTTTTGGTAAAACGCCGCTAAAAACCA
*
76348114 GAGCATTAGCGGCGTTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
76348155 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
76348196 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
**
76348237 GAGCATTAGAAGCGCTTTTGGTAAAACGCCGCTAAAAACCA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
* * *
76348278 GAGCACTAGCGGCGCTTTTGGCAAAATGCCGCTAAAA
1 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
76348315 GTCATATAAT
Statistics
Matches: 224, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
40 36 0.16
41 188 0.84
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACCA
Found at i:76348389 original size:54 final size:53
Alignment explanation
Indices: 76348330--76348447 Score: 123
Period size: 54 Copynumber: 2.2 Consensus size: 53
76348320 ATAATCCCTA
*
76348330 AAACCCTAAACCCCCAAAAAAT-A-ATAAACACTAATCTATAACCCCTAAAACACT
1 AAACCCTAAA--CCC-AAAAATCACATAAACACTAAACTATAACCCCTAAAACACT
* * * * *
76348384 AAACCCCTAAATCCTAAAATCACCTAAATACTAAACTATAACCCCTAAAACCCT
1 AAA-CCCTAAACCCAAAAATCACATAAACACTAAACTATAACCCCTAAAACACT
*
76348438 AAACTCTAAA
1 AAACCCTAAA
76348448 AAACATCATA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
52 5 0.09
53 9 0.17
54 33 0.61
55 7 0.13
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (53 bp):
AAACCCTAAACCCAAAAATCACATAAACACTAAACTATAACCCCTAAAACACT
Found at i:76349532 original size:14 final size:14
Alignment explanation
Indices: 76349513--76349542 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
76349503 CTAATTTTTC
76349513 CCCCAAACCAAAAT
1 CCCCAAACCAAAAT
*
76349527 CCCCAAATCAAAAT
1 CCCCAAACCAAAAT
76349541 CC
1 CC
76349543 TTCCACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.43, G:0.00, T:0.10
Consensus pattern (14 bp):
CCCCAAACCAAAAT
Found at i:76349627 original size:14 final size:14
Alignment explanation
Indices: 76349608--76349636 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76349598 GCATTTCTTA
76349608 CTTCTCTAAATCTC
1 CTTCTCTAAATCTC
76349622 CTTCTCTAAATCTC
1 CTTCTCTAAATCTC
76349636 C
1 C
76349637 ATCCCTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.38, G:0.00, T:0.41
Consensus pattern (14 bp):
CTTCTCTAAATCTC
Found at i:76354858 original size:40 final size:40
Alignment explanation
Indices: 76354781--76354996 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
76354771 AAACCAAGTA
* * *
76354781 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
76354820 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
*
76354860 CCCTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76354900 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
76354940 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
76354980 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
76354997 AGTTATCATC
Statistics
Matches: 161, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 17 0.11
40 142 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76360857 original size:23 final size:23
Alignment explanation
Indices: 76360827--76360904 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
76360817 TACCATTTCT
76360827 GGAAGCTCATAAAGAGCCTATCG
1 GGAAGCTCATAAAGAGCCTATCG
*
76360850 GGAAGCTCAT-AAGAGGCATAATCG
1 GGAAGCTCATAAAGA-GCCT-ATCG
* * * *
76360874 GGAAGTTCAAAAAGAACCATAACG
1 GGAAGCTCATAAAGAGCC-TATCG
76360898 GGAAGCT
1 GGAAGCT
76360905 TCGGATAGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
22 4 0.09
23 13 0.30
24 22 0.50
25 5 0.11
ACGTcount: A:0.40, C:0.18, G:0.27, T:0.15
Consensus pattern (23 bp):
GGAAGCTCATAAAGAGCCTATCG
Found at i:76360894 original size:25 final size:23
Alignment explanation
Indices: 76360846--76360932 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 23
76360836 TAAAGAGCCT
* * *
76360846 ATCGGGAAGCTCATAAGAGGCATA
1 ATCGGGAAGTTCA-AAAAGCCATA
76360870 ATCGGGAAGTTCAAAAAGAACCATA
1 ATCGGGAAGTTCAAAAAG--CCATA
** *
76360895 A-CGGGAAGCTTCGGATAGCCATA
1 ATCGGGAAG-TTCAAAAAGCCATA
76360918 TATCGGGAAGTTCAA
1 -ATCGGGAAGTTCAA
76360933 GCAAGTATTA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
23 9 0.18
24 23 0.46
25 18 0.36
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.18
Consensus pattern (23 bp):
ATCGGGAAGTTCAAAAAGCCATA
Found at i:76370852 original size:20 final size:20
Alignment explanation
Indices: 76370827--76370868 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
76370817 ACTAAATTAA
76370827 TTAATTAATCTGA-ACAATAT
1 TTAATTAAT-TGACACAATAT
*
76370847 TTAATTAATTGACATAATAT
1 TTAATTAATTGACACAATAT
76370867 TT
1 TT
76370869 GTATGGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (20 bp):
TTAATTAATTGACACAATAT
Found at i:76371737 original size:85 final size:85
Alignment explanation
Indices: 76371579--76371749 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
76371569 AATGCTCCAC
* ** * * * * *
76371579 ATACTTGTGTTGTTGCAGGTATGTCACGGGATCATCTGAAATTTGATTTTGACCTGATCTCTGAC
1 ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCTCAAATTTGATTATGACCTAATATATGAC
* **
76371644 ATTGTCTTATGTATGGTGAA
66 ATTATCTTACCTATGGTGAA
*
76371664 ATACTTGTGTTGTTGTACGTATGTCACAAGATCATC-CAAATTTGGATTATGACCTAATATATGA
1 ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCTCAAATTT-GATTATGACCTAATATATGA
*
76371728 TATTATCTTACCTATGGTGAA
65 CATTATCTTACCTATGGTGAA
76371749 A
1 A
76371750 GCAAGTCCTA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
84 6 0.08
85 66 0.92
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (85 bp):
ATACTTGTGTTGTTGCACGTATGTCACAAGATCATCTCAAATTTGATTATGACCTAATATATGAC
ATTATCTTACCTATGGTGAA
Done.