Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 226 of 362
Found at i:76376777 original size:68 final size:64
Alignment explanation
Indices: 76376691--76376906 Score: 220
Period size: 67 Copynumber: 3.3 Consensus size: 64
76376681 CGAGATGCAT
*
76376691 ACCATGTGTACAAGAGAGCTACGAGACATTATGAGGTAGCTAGGTCGCATGGGTGATACTATGTA
1 ACCATGTGTACAAGAGAGCTACGAG--A-TA-GAAGTAGCTAGGTCGCATGGGTGATACTATGTA
76376756 TAC
62 TAC
* * * * * * *
76376759 ACCATGTAG-ACAAGAGAGCTACGAGATAGATGTAGCTAGGTTGCATGTGTGGTTCGAGGTGAAG
1 ACCATGT-GTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTA--TGTA-
*
76376823 GAC
62 TAC
** * * *
76376826 ACCATGTAAACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATGTGTAC
1 ACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTATGTATAC
76376889 ACCATGTGTACAAGAGAG
1 ACCATGTGTACAAGAGAG
76376907 GCAAAATTAT
Statistics
Matches: 121, Mismatches: 22, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
63 18 0.15
64 25 0.21
65 2 0.02
66 24 0.20
67 28 0.23
68 23 0.19
69 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (64 bp):
ACCATGTGTACAAGAGAGCTACGAGATAGAAGTAGCTAGGTCGCATGGGTGATACTATGTATAC
Found at i:76382503 original size:16 final size:16
Alignment explanation
Indices: 76382484--76382515 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76382474 AATTGTTTTA
76382484 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
76382500 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
76382516 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:76382780 original size:50 final size:50
Alignment explanation
Indices: 76382726--76383102 Score: 359
Period size: 50 Copynumber: 7.5 Consensus size: 50
76382716 TAGGTACGCA
76382726 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * * * * *
76382776 TAGTAGCCTGCGCTTAGTACGACACATGTGACTTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * ** * * ** *
76382826 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTACACG
* *
76382877 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* * * * * *
76382927 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
* ** * *
76382977 TAGTAG-CTACACTTAGTACTACACACATGATCGAAGT-T-AA-CGGGTACACA
1 TAGTAGCCTGCACTTAGTACT--ACACATG--CGACCTATCAATCTGGTACACG
**
76383027 TAGTAGTTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
*
76383077 TAGTAGCCTGCACTTAGTACAACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76383103 CGTGAATCAC
Statistics
Matches: 256, Mismatches: 60, Indels: 22
0.76 0.18 0.07
Matches are distributed among these distances:
47 4 0.02
48 1 0.00
49 25 0.10
50 170 0.66
51 52 0.20
52 1 0.00
53 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
Found at i:76382919 original size:101 final size:101
Alignment explanation
Indices: 76382776--76382957 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
76382766 CTGGTACACG
* * * * *
76382776 TAGTAGCCTGCGCTTAGTACGACACATGTGACTTAACCATCTGATACATGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACGACACATGCGACCTAACAATCTGATACACGTAGTAGCCTACACTT
76382841 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
* * * *
76382877 TAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACGACACATGCGACCTAACAATCTGATACACGTAGTAGCCTACACTT
76382942 AGTACTACACACGTGA
66 AGTACTACACACGTGA
76382958 CTTAACCATC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACGACACATGCGACCTAACAATCTGATACACGTAGTAGCCTACACTT
AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
Found at i:76383075 original size:150 final size:151
Alignment explanation
Indices: 76382718--76383107 Score: 674
Period size: 150 Copynumber: 2.6 Consensus size: 151
76382708 AAAGCTCTTA
*
76382718 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
76382783 CTGCGCTTAGTACGACACATGTGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACAACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
*
76382848 CACACGTGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* *
76382869 GGTATGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGATACACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
76382934 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAG-CTACACTTAGTACTA
66 CTGCACTTAGTACAACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
76382998 CACACATGATCGAAGTTAACG
131 CACACATGATCGAAGTTAACG
* *
76383019 GGTACACATAGTAGTTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
76383084 CTGCACTTAGTACAACACACGTGA
66 CTGCACTTAGTACAACACACGTGA
76383108 ATCACAATGA
Statistics
Matches: 226, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
150 119 0.53
151 107 0.47
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACAACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTA
CACACATGATCGAAGTTAACG
Found at i:76387925 original size:40 final size:39
Alignment explanation
Indices: 76387841--76388024 Score: 219
Period size: 39 Copynumber: 4.6 Consensus size: 39
76387831 TTGAATGATG
* * * *
76387841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
76387881 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
76387921 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
76387960 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76388000 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
76388025 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
39 69 0.55
40 48 0.38
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76388042 original size:79 final size:78
Alignment explanation
Indices: 76387842--76388057 Score: 215
Period size: 79 Copynumber: 2.7 Consensus size: 78
76387832 TGAATGATGT
** * * * **
76387842 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATTT
*
76387906 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** *
76387922 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGTG
*
76387987 CGAGTTACT-ATAA
66 CGAGATACTAAT-A
* *
76388000 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
76388058 TACGTGATTT
Statistics
Matches: 118, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 39 0.33
79 60 0.51
80 17 0.14
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:76395946 original size:79 final size:81
Alignment explanation
Indices: 76395810--76395994 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
76395800 TTGAATGATG
*
76395810 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76395874 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76395889 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76395951 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76395969 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76395995 AATGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76396008 original size:40 final size:40
Alignment explanation
Indices: 76395811--76395994 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
76395801 TGAATGATGT
* * * *
76395811 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76395851 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
76395891 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76395929 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76395970 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76395995 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76396016 original size:79 final size:79
Alignment explanation
Indices: 76395863--76396027 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
76395853 GGACTAAGAT
* **
76395863 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76395928 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76395942 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76396005 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76396021 CCGAAGG
1 CCGAAGG
76396028 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76406425 original size:8 final size:8
Alignment explanation
Indices: 76406412--76406441 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
76406402 CTAGATTGGC
76406412 AAAAGCTG
1 AAAAGCTG
76406420 AAAAGCTG
1 AAAAGCTG
*
76406428 AAATGCTG
1 AAAAGCTG
76406436 AAAAGC
1 AAAAGC
76406442 CGACATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (8 bp):
AAAAGCTG
Found at i:76406727 original size:25 final size:26
Alignment explanation
Indices: 76406698--76406797 Score: 134
Period size: 25 Copynumber: 3.9 Consensus size: 26
76406688 CCTAAGTATG
* *
76406698 AAAATTACAATT-TACCTCTAGGTGC
1 AAAATTACCATTATACCCCTAGGTGC
*
76406723 AAAATTACCATTATACCCCTAAGTATG-
1 AAAATTACCATTATACCCCT-AG-GTGC
76406750 AAAATTACCATT-TACCCCTAGGTGC
1 AAAATTACCATTATACCCCTAGGTGC
76406775 AAAATTACCATTATACCCCTAGG
1 AAAATTACCATTATACCCCTAGG
76406798 GTTAATTTTG
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
24 2 0.03
25 25 0.38
26 23 0.35
27 14 0.21
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATTACCATTATACCCCTAGGTGC
Found at i:76406740 original size:52 final size:52
Alignment explanation
Indices: 76406683--76406795 Score: 208
Period size: 52 Copynumber: 2.2 Consensus size: 52
76406673 ATTCACTAAA
*
76406683 ATACCCCTAAGTATGAAAATTACAATTTACCTCTAGGTGCAAAATTACCATT
1 ATACCCCTAAGTATGAAAATTACAATTTACCCCTAGGTGCAAAATTACCATT
*
76406735 ATACCCCTAAGTATGAAAATTACCATTTACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAAGTATGAAAATTACAATTTACCCCTAGGTGCAAAATTACCATT
76406787 ATACCCCTA
1 ATACCCCTA
76406796 GGGTTAATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.37, C:0.25, G:0.09, T:0.29
Consensus pattern (52 bp):
ATACCCCTAAGTATGAAAATTACAATTTACCCCTAGGTGCAAAATTACCATT
Found at i:76406938 original size:28 final size:28
Alignment explanation
Indices: 76406898--76406982 Score: 127
Period size: 28 Copynumber: 3.1 Consensus size: 28
76406888 GGAGGAAGCG
76406898 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
76406926 TTCTGATGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
76406954 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
76406981 TT
1 TT
76406983 TGGCAGCCAT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 10 0.20
28 41 0.80
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:76407562 original size:33 final size:33
Alignment explanation
Indices: 76407515--76407580 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
76407505 AAAAGAGATT
*
76407515 ACCTAATTTCAAAATATCGTGAAACAAGACAAA
1 ACCTAATTTCAAAATATCGGGAAACAAGACAAA
*
76407548 ACCTGATTTCAAAATATCGGGAAACAAGACAAA
1 ACCTAATTTCAAAATATCGGGAAACAAGACAAA
76407581 GCTTCCAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.50, C:0.18, G:0.12, T:0.20
Consensus pattern (33 bp):
ACCTAATTTCAAAATATCGGGAAACAAGACAAA
Found at i:76414575 original size:27 final size:27
Alignment explanation
Indices: 76414542--76414607 Score: 109
Period size: 26 Copynumber: 2.5 Consensus size: 27
76414532 ATATACTAAA
76414542 ATACCCCTAAGGATG-AAAATTACCATT
1 ATACCCCT-AGGATGCAAAATTACCATT
76414569 ATACCCCTAGG-TGCAAAATTACCATT
1 ATACCCCTAGGATGCAAAATTACCATT
76414595 ATACCCCTAGGAT
1 ATACCCCTAGGAT
76414608 TAATTTTGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
25 2 0.05
26 26 0.70
27 9 0.24
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (27 bp):
ATACCCCTAGGATGCAAAATTACCATT
Found at i:76414772 original size:27 final size:26
Alignment explanation
Indices: 76414704--76414820 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 26
76414694 ATGGAGGAAG
* *
76414704 TGTTCTGATGGCTCTGCTACAAATATC
1 TGTTCTGGTGGCTCTGCCAC-AATATC
76414731 TGTTTCTGGTGGCTCTGCCACAAATATC
1 TG-TTCTGGTGGCTCTGCCAC-AATATC
76414759 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTCTGCCACAATATC
** * *
76414785 TGTATCTACTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTCTGCCACAATATC
76414812 TGTTCTGGT
1 TGTTCTGGT
76414821 AGCCATGCCG
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 13 0.16
27 42 0.52
28 25 0.31
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCACAATATC
Found at i:76417466 original size:30 final size:30
Alignment explanation
Indices: 76417432--76417488 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
76417422 CCGAAGTTAG
76417432 TTAAATCGCACACTTAGTGCCAAAGCTAGT
1 TTAAATCGCACACTTAGTGCCAAAGCTAGT
76417462 TTAAATCGCACACTTAGTGCCAAAGCT
1 TTAAATCGCACACTTAGTGCCAAAGCT
76417489 TCCGATTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (30 bp):
TTAAATCGCACACTTAGTGCCAAAGCTAGT
Found at i:76420224 original size:48 final size:48
Alignment explanation
Indices: 76420150--76420489 Score: 635
Period size: 48 Copynumber: 7.1 Consensus size: 48
76420140 CAAGATAAAT
* *
76420150 AGATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
76420198 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
76420246 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
76420294 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
76420342 AGATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
76420390 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
*
76420438 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
76420486 AGAT
1 AGAT
76420490 GTGTGTATAT
Statistics
Matches: 285, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 285 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:76420674 original size:37 final size:37
Alignment explanation
Indices: 76420619--76420732 Score: 160
Period size: 37 Copynumber: 3.1 Consensus size: 37
76420609 ACATGAAACT
* *
76420619 TGGAAATATATTCTGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTATGTG
76420656 TGGAAATATATTCCGGGTAAGACCCGATGACTATGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTATGTG
* *
76420693 TGGAGAT-T-TTGCCCGGGTAAGACCCGATAACTATGTG
1 TGGAAATATATT--CCGGGTAAGACCCGATGACTATGTG
76420730 TGG
1 TGG
76420733 GGACTATTCG
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
35 2 0.03
36 1 0.01
37 68 0.96
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTATGTG
Found at i:76427596 original size:35 final size:35
Alignment explanation
Indices: 76427543--76427616 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
76427533 GGTTATCTAC
*
76427543 AGGTCCTTCAGGAAGACACCATGTAAAC-GATATAT
1 AGGTCCTTCAGGAAGACACCACGTAAACTG-TATAT
* ** *
76427578 AGGTCCTTCGGGGTGACACCGCGTAAACTGTATAT
1 AGGTCCTTCAGGAAGACACCACGTAAACTGTATAT
76427613 AGGT
1 AGGT
76427617 TATTTAGGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
35 32 0.97
36 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (35 bp):
AGGTCCTTCAGGAAGACACCACGTAAACTGTATAT
Found at i:76427737 original size:35 final size:35
Alignment explanation
Indices: 76427637--76427746 Score: 112
Period size: 35 Copynumber: 3.1 Consensus size: 35
76427627 GATATTGTTT
* ** * * * *
76427637 ACACAGTGTAAATGATATATAGGTCCTTCGAGGCG
1 ACACCGTGTAAACAATATACAGGTCCTACGGGGTG
* *
76427672 ACACCGTGTAAATAATATACAAGTCCTACGGGGTG
1 ACACCGTGTAAACAATATACAGGTCCTACGGGGTG
* * *
76427707 ACACTGTGTAAACATTATACAGGTCCTACGGAGTG
1 ACACCGTGTAAACAATATACAGGTCCTACGGGGTG
76427742 ACACC
1 ACACC
76427747 TCGAAAGGGA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 62 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.24
Consensus pattern (35 bp):
ACACCGTGTAAACAATATACAGGTCCTACGGGGTG
Found at i:76428663 original size:22 final size:22
Alignment explanation
Indices: 76428638--76428694 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
76428628 GAGAGACCCT
*
76428638 CGTCCTGATGACGCGATAAGGG
1 CGTCCTGATGACGCGATAAAGG
76428660 CGTCCTGATGACGCGATAAAGG
1 CGTCCTGATGACGCGATAAAGG
* *
76428682 TGTCCTGACGACG
1 CGTCCTGATGACG
76428695 TTCAATCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (22 bp):
CGTCCTGATGACGCGATAAAGG
Found at i:76439490 original size:27 final size:27
Alignment explanation
Indices: 76439452--76439627 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 27
76439442 GAATGTATAT
* * *
76439452 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAAATC
*
76439479 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
* *
76439506 GCACACTTAGTGCTACATAGTTAAACTC
1 GCACACTTAGTGCTACATAATCAAA-TC
** ** *
76439534 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAATCAAATC
* **
76439561 GCACACTTAGTGC-ATCAT-ATTATTTC
1 GCACACTTAGTGCTA-CATAATCAAATC
* *
76439587 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
76439614 GCACACTTAGTGCT
1 GCACACTTAGTGCT
76439628 GTACAATTTA
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.17
27 81 0.65
28 22 0.18
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAAATC
Found at i:76439542 original size:55 final size:53
Alignment explanation
Indices: 76439452--76439627 Score: 201
Period size: 55 Copynumber: 3.3 Consensus size: 53
76439442 GAATGTATAT
* * * * * *
76439452 GCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACAT-ATTAACTCGCACACTTAGTGCAACATAGTCAAATC
** * *
76439506 GCACACTTAGTGCTACATAGTTAAACTCGCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATA-TT-AACTCGCACACTTAGTGCAACATAGTCAAATC
**
76439561 GCACACTTAGTGC-ATCATATTATTTCGCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTA-CATATTAACTCGCACACTTAGTGCAACATAGTCAAATC
76439614 GCACACTTAGTGCT
1 GCACACTTAGTGCT
76439628 GTACAATTTA
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
53 40 0.39
54 20 0.19
55 43 0.42
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (53 bp):
GCACACTTAGTGCTACATATTAACTCGCACACTTAGTGCAACATAGTCAAATC
Found at i:76447647 original size:27 final size:27
Alignment explanation
Indices: 76447617--76447821 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
76447607 ATATTGAGTC
* * *
76447617 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
76447644 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
76447671 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
76447698 CGCACACTTAGTGCTACATAGTTAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
76447726 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* * **
76447753 CGCACACTTAGTGC-ATCATATTTATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
76447780 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
76447807 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76447822 GTACAATTTA
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
27 130 0.85
28 23 0.15
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:76462844 original size:47 final size:47
Alignment explanation
Indices: 76462781--76463105 Score: 534
Period size: 47 Copynumber: 7.0 Consensus size: 47
76462771 ATGATAGTAT
76462781 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76462828 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76462875 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76462922 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76462969 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG--AA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
76463014 GGCC-GATGGCC-ATGTGATG-ATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
76463058 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76463105 G
1 G
76463106 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 8, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
42 21 0.08
43 8 0.03
44 11 0.04
45 11 0.04
46 7 0.03
47 207 0.78
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:76463280 original size:37 final size:37
Alignment explanation
Indices: 76463224--76463302 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76463214 CCGAGCTCTA
* * *
76463224 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76463261 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76463298 AAGAC
1 AAGAC
76463303 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76464800 original size:40 final size:40
Alignment explanation
Indices: 76464517--76464782 Score: 399
Period size: 40 Copynumber: 6.7 Consensus size: 40
76464507 GAGAATTGAG
76464517 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
76464557 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
76464597 AGTGATATATTCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
76464637 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
76464677 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
76464717 AGTAATATATCCGTGCTAA-ACCTCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
76464757 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
76464783 AGAGTAATCA
Statistics
Matches: 204, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.00
40 201 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:76465014 original size:25 final size:25
Alignment explanation
Indices: 76464960--76465014 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
76464950 TGTGTATTAA
76464960 CGAATGAATAAGAGCACTATGTATG
1 CGAATGAATAAGAGCACTATGTATG
* * * *
76464985 TGAAT-AATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTATG
76465010 CGAAT
1 CGAAT
76465015 TCCTTTAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTATG
Found at i:76468218 original size:25 final size:25
Alignment explanation
Indices: 76468190--76468268 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
76468180 CTAATGGCCG
76468190 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
76468215 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
76468237 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
76468262 ATGTGAT
1 ATGTGAT
76468269 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:76468240 original size:47 final size:47
Alignment explanation
Indices: 76468177--76468412 Score: 391
Period size: 47 Copynumber: 5.0 Consensus size: 47
76468167 ATGATAGTAT
76468177 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76468224 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
76468271 GGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
76468318 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
76468365 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76468412 G
1 G
76468413 TCCCGAAGGG
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 177 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:76468587 original size:37 final size:37
Alignment explanation
Indices: 76468531--76468609 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76468521 CCGAGCTCTA
* * *
76468531 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76468568 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76468605 AAGAC
1 AAGAC
76468610 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76472100 original size:46 final size:45
Alignment explanation
Indices: 76471963--76472178 Score: 186
Period size: 46 Copynumber: 4.6 Consensus size: 45
76471953 TCATTTGTGT
* *** * *
76471963 GAGCTAGTGTAAGACATGTCTGGGACATGCACCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTGA-GACGA
* *
76472009 GAGCTAGTGTAAGACCAGGTCTTGGACATGGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGACGA
* * *
76472057 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGATCTTGAGACTTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG-GCTTGAGAC-GA
* *
76472104 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-TTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTT--GAGACGA
* *
76472149 TAG-TCAGTGTAAGACCATGTTTGGGACATG
1 GAGCT-AGTGTAAGA-CATGTCTGGGACATG
76472179 GCATTATCAC
Statistics
Matches: 140, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 73 0.52
47 40 0.29
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGACGA
Found at i:76478928 original size:93 final size:93
Alignment explanation
Indices: 76478820--76478991 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
76478810 GCCCATAAGA
* * * * *
76478820 GAACTCGGACTCAACTCAACGAGCTCGGGCTTTTGCATCCATAAGTGAACTC-GAACTGAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAG-ACTCAACTCA
76478884 ACGAGCTCGGATGCCTAGTTACATCTCAC
65 ACGAGCTCGGATGCCTAGTTACATCTCAC
* *
76478913 GAACTCAGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCAGACTCAACTTAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
76478978 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
76478992 CAAATACCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:76478971 original size:46 final size:45
Alignment explanation
Indices: 76478812--76478987 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
76478802 TGTAACCCGC
* * * *
76478812 CCATAAGAGAACTCGGACTCAACTCAACGAGCTCGGGCTTTTGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGAC-ATTGCAT
* *
76478858 CCATAAGTGAACTC-GAACTGAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTCGGA---C-A-TTGCAT
* * *
76478908 -C-TCA-CGAACTCAGACTCAACTCAACGAGCTTGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATT-GCAT
*
76478951 CCATAAGTGAACTCAGACTCAACTTAACGAGCTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
76478988 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 59 0.56
47 25 0.24
48 3 0.03
49 3 0.03
50 5 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTGCAT
Found at i:76483504 original size:9 final size:9
Alignment explanation
Indices: 76483490--76483518 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
76483480 TGGCTCTAAC
76483490 AGAGTTGAA
1 AGAGTTGAA
76483499 AGAGTTGAA
1 AGAGTTGAA
76483508 AGAGTTGAA
1 AGAGTTGAA
76483517 AG
1 AG
76483519 CACAGTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.34, T:0.21
Consensus pattern (9 bp):
AGAGTTGAA
Found at i:76495444 original size:30 final size:30
Alignment explanation
Indices: 76495399--76495458 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
76495389 ATTTAATACG
* *
76495399 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* * *
76495429 AACTTTTGCATAATTACACTTTTGGCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
76495459 GGTTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:76497409 original size:30 final size:30
Alignment explanation
Indices: 76497375--76497431 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
76497365 AATCGATTTT
** *
76497375 AAAGTATAGGGGCAAAATGGTTATTTTGTC
1 AAAGTATAAAGGCAAAATGGTCATTTTGTC
*
76497405 AAAGTCTAAAGGCAAAATGGTCATTTT
1 AAAGTATAAAGGCAAAATGGTCATTTT
76497432 ACCTAATATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.32
Consensus pattern (30 bp):
AAAGTATAAAGGCAAAATGGTCATTTTGTC
Found at i:76497828 original size:46 final size:45
Alignment explanation
Indices: 76497775--76498037 Score: 203
Period size: 46 Copynumber: 5.6 Consensus size: 45
76497765 TCACTTGTGT
*
76497775 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACA-GATGA
* * * *
76497821 GAGCTAGTGTAAGACCATGTCT-GAGAGATGGCATC-GGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTAG-GACAT-GCATCAGCCA--CAGATGA
* * * *
76497869 GGGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTTCAGACTTA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCC-ACAGA-TGA
* * *
76497916 -AGCTAGTGTAAGACATGCCTGGGACATGCATCAGCTACGAGATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-AGATGA
* * ***
76497961 TAG-TCAGTGTAAGACCATGTCTAGGACATGGCATCAACTTGAGAT-A
1 GAGCT-AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACAGATGA
*
76498007 TGAGCTAGTGTAAGACCATGTCTGGGACATG
1 -GAGCTAGTGTAAGA-CATGTCTAGGACATG
76498038 GCATTGGCAC
Statistics
Matches: 175, Mismatches: 26, Indels: 32
0.75 0.11 0.14
Matches are distributed among these distances:
45 4 0.02
46 70 0.40
47 69 0.39
48 31 0.18
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAGATGA
Found at i:76498028 original size:140 final size:140
Alignment explanation
Indices: 76497776--76498037 Score: 345
Period size: 140 Copynumber: 1.9 Consensus size: 140
76497766 CACTTGTGTG
* *
76497776 AGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCTAGTGTAAGACCATGT
1 AGCTAGTGTAAGACATGCCTAGGACATGCATCAGCCACATGATGAGAGCTAGTGTAAGACCATGT
* ** *
76497841 CTGAGAGATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTAGGACATGCATCGGCC
66 CTGAGACATGGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCC
76497906 TTCAGACTTA
131 TTCAGACTTA
* * *
76497916 AGCTAGTGTAAGACATGCCTGGGACATGCATCAGCTACGA-GATGATAG-TCAGTGTAAGACCAT
1 AGCTAGTGTAAGACATGCCTAGGACATGCATCAGCCAC-ATGATGAGAGCT-AGTGTAAGACCAT
* *
76497979 GTCT-AGGACATGGCATCAAC-TTGAGA-TATGAGCTAGTGTAAGACCATGTCTGGGACATG
64 GTCTGA-GACATGGCATCAACATTGAGACGA-GAGCTAGTGTAAGA-CATGTCTAGGACATG
76498038 GCATTGGCAC
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
138 1 0.01
139 21 0.20
140 83 0.78
141 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGACATGCCTAGGACATGCATCAGCCACATGATGAGAGCTAGTGTAAGACCATGT
CTGAGACATGGCATCAACATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCC
TTCAGACTTA
Found at i:76505277 original size:14 final size:14
Alignment explanation
Indices: 76505258--76505288 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
76505248 ACATAAATAT
76505258 CTCAAAATATAGAA
1 CTCAAAATATAGAA
76505272 CTCAAAATATAGAA
1 CTCAAAATATAGAA
76505286 CTC
1 CTC
76505289 CTTTGCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (14 bp):
CTCAAAATATAGAA
Found at i:76506706 original size:30 final size:30
Alignment explanation
Indices: 76506672--76506732 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76506662 TCCTTAACTC
76506672 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76506702 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76506732 A
1 A
76506733 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76509069 original size:43 final size:43
Alignment explanation
Indices: 76509017--76509187 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
76509007 ATAAGATTTT
*
76509017 GATATGTGATTTCATGTAAGACCACGTTTGGGACATTGGCATC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
* * *
76509060 GATTTGTGATTT-ATGTGTAAGACCATGTCTGGGACATTGGCATT
1 GATATGTGATTTCA--TGTAAGACCACGTCTGGGACATTGGCATC
* * * * *
76509104 G-TATATGAGTTCGTGTAAGACC-CTGTCTGGGATAGTGGCATC
1 GATATGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATC
* * * *
76509146 GATATGTGATTACATGTAAGACAACGTCTAGGACGTTGGCAT
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
76509188 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
42 26 0.26
43 47 0.47
44 28 0.28
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:76509154 original size:86 final size:85
Alignment explanation
Indices: 76509031--76509191 Score: 207
Period size: 85 Copynumber: 1.9 Consensus size: 85
76509021 TGTGATTTCA
* * * ** * * *
76509031 TGTAAGACCACGTTTGGGACATTGGCATCGATTTGTGATTTATGTGTAAGACCATGTCTGGGACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGA-TTACATGTAAGACAACGTCTAGGACA
76509096 TTGGCATTGTATATGAGTTCG
65 TTGGCATTGTATATGAGTTCG
* *
76509117 TGTAAGACC-CTGTCTGGGATAGTGGCATCGATATGTGATTACATGTAAGACAACGTCTAGGACG
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACAACGTCTAGGACA
76509181 TTGGCATTGTA
65 TTGGCATTGTA
76509192 CGAGCTTTTC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 32 0.50
86 32 0.50
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (85 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATGTGATTACATGTAAGACAACGTCTAGGACAT
TGGCATTGTATATGAGTTCG
Found at i:76519778 original size:27 final size:26
Alignment explanation
Indices: 76519730--76519781 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76519720 GCGAGGCTAC
*
76519730 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76519756 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76519782 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76520462 original size:27 final size:27
Alignment explanation
Indices: 76520432--76520546 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 27
76520422 GGGGCAAAAT
*
76520432 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * * *
76520459 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * *
76520486 GGT-ATTTCTACCCTATAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATCTC
* * * * *
76520513 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
*
76520540 AGTAATT
1 GGTAATT
76520547 CTACAACTTA
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 3 0.04
27 64 0.91
28 3 0.04
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATCTC
Found at i:76520507 original size:54 final size:54
Alignment explanation
Indices: 76520433--76520550 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
76520423 GGGCAAAATG
* * * * *
76520433 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCATACAGGGGTATTTCG
1 GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
* * * *
76520487 GTATTTCTACCCTATAAGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
76520541 GTAATTCTAC
1 GTAATTCTAC
76520551 AACTTATCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTATAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCA
Found at i:76520547 original size:27 final size:27
Alignment explanation
Indices: 76520450--76520550 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
76520440 TACCCCACAA
* *
76520450 GGGTATCTCGGTAATTCTACCATACAG
1 GGGTATTTCAGTAATTCTACCATACAG
* * * * *
76520477 GGGTATTTCGGTATTTCTACCCTATAA
1 GGGTATTTCAGTAATTCTACCATACAG
* *
76520504 GGGTATTTTAGTAATTCTACCTTACAG
1 GGGTATTTCAGTAATTCTACCATACAG
76520531 GGGTATTTCAGTAATTCTAC
1 GGGTATTTCAGTAATTCTAC
76520551 AACTTATCCA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCATACAG
Found at i:76527856 original size:27 final size:26
Alignment explanation
Indices: 76527808--76527859 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76527798 GCGAGGCTGC
*
76527808 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76527834 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76527860 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76528584 original size:54 final size:54
Alignment explanation
Indices: 76528515--76528629 Score: 171
Period size: 54 Copynumber: 2.1 Consensus size: 54
76528505 CAAAATGGTA
76528515 ATTT-TACCCCACAAGGGTATCTC-GATAATTCTACCATACAGGGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCTCAG-TAATTCTACCATACAGGGGTATTTCGGT
* * *
76528568 ATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGT
1 ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCGGT
*
76528622 AATTCTAC
1 ATTTCTAC
76528630 AACTTATCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
53 4 0.07
54 51 0.91
55 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCCACAAGGGTATCTCAGTAATTCTACCATACAGGGGTATTTCGGT
Found at i:76528626 original size:27 final size:27
Alignment explanation
Indices: 76528511--76528629 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
76528501 GGGGCAAAAT
* * *
76528511 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76528538 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76528565 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
76528592 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
76528619 GGTAATTCTAC
1 GGTAATTCTAC
76528630 AACTTATCCA
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:76533434 original size:27 final size:26
Alignment explanation
Indices: 76533398--76533531 Score: 144
Period size: 27 Copynumber: 5.0 Consensus size: 26
76533388 ATACACCAAG
*
76533398 TTGTAAAATTACCAAAGTACCCTCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
76533425 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
*
76533452 TTTTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* *
76533479 TTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
76533506 TTGTAAAATTATCAAAGTACCCTCGA
1 TTGTAAAATTACCAAA-TACCCTCGA
76533532 ATTAAAAAAT
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
26 6 0.07
27 79 0.87
28 6 0.07
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:76533530 original size:81 final size:80
Alignment explanation
Indices: 76533377--76533531 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 80
76533367 TTAGTTTACC
* **
76533377 AAATTACTGAAATACACCAAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCCAAA
1 AAATTACCGAAATACACCAAGTTGTAAAATTACCAAAGTACCCTCGACTTATAAAATTACCCAAA
*
76533442 TATCCTCGATTTTTA
66 TACCCTCGATTTTTA
* * * *
76533457 AAATTACCGAAATAC-CCTCAGTTTGTAAAATTACTGAAA-TACCCTCGACTTGTAAAATTA-TC
1 AAATTACCGAAATACACC-AAG-TTGTAAAATTAC-CAAAGTACCCTCGACTTATAAAATTACCC
76533519 AAAGTACCCTCGA
63 AAA-TACCCTCGA
76533532 ATTAAAAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
79 2 0.03
80 20 0.32
81 38 0.60
82 3 0.05
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACCGAAATACACCAAGTTGTAAAATTACCAAAGTACCCTCGACTTATAAAATTACCCAAA
TACCCTCGATTTTTA
Found at i:76533541 original size:54 final size:54
Alignment explanation
Indices: 76533377--76533543 Score: 178
Period size: 54 Copynumber: 3.1 Consensus size: 54
76533367 TTAGTTTACC
* * * *
76533377 AAATTACTGAAATACAC-CAAGTTGTAAAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATA
** * * * *
76533430 AAATTACCCAAATATCCTCGATTTTTAAAATTACCGAAA-TACCCTC-AGTTTGTA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTCGA-TTTATA
* * *
76533484 AAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTCGAATTAAA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATA
76533538 AAATTA
1 AAATTA
76533544 TTGTTTACCC
Statistics
Matches: 91, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
53 16 0.18
54 71 0.78
55 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATA
Found at i:76533587 original size:27 final size:27
Alignment explanation
Indices: 76533523--76533931 Score: 482
Period size: 27 Copynumber: 15.2 Consensus size: 27
76533513 ATTATCAAAG
* *
76533523 TACCCTCGAATTAAAAAATTA-T-TGTT
1 TACCCTCGATTTACAAAATTACTAT-TT
* *
76533549 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533576 TACCCTCAATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
*
76533603 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
** *
76533630 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533657 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
76533684 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
76533711 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
76533738 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533765 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533792 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533819 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
76533846 TACGCTCGACTAACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
76533873 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
76533900 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
76533927 TACCC
1 TACCC
76533932 CTAGGGTGTT
Statistics
Matches: 332, Mismatches: 47, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
26 19 0.06
27 312 0.94
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:76534485 original size:31 final size:31
Alignment explanation
Indices: 76534450--76534541 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 31
76534440 TCTAATTTTG
*
76534450 ATTCTATTACCTGATACTGATTCTGATTCTA
1 ATTCTATCACCTGATACTGATTCTGATTCTA
* * * * *
76534481 ATTCTATCACCTAATTCTGATCCTGGTTCTG
1 ATTCTATCACCTGATACTGATTCTGATTCTA
* * *
76534512 ATTCTGTCACCAGATCCTGATTCTGATTCT
1 ATTCTATCACCTGATACTGATTCTGATTCT
76534542 CATTTTGATT
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (31 bp):
ATTCTATCACCTGATACTGATTCTGATTCTA
Found at i:76558626 original size:39 final size:40
Alignment explanation
Indices: 76558526--76558710 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
76558516 TCGAATGATG
* * *
76558526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
*
76558567 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
76558606 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
76558645 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
76558684 AACCGGGGTATGTCTCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76558711 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 38 0.31
40 75 0.61
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:76558732 original size:79 final size:79
Alignment explanation
Indices: 76558579--76558743 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
76558569 GGACTAAGAT
* ***
76558579 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
76558644 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
76558658 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGGTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
76558721 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76558737 CCGAAGG
1 CCGAAGG
76558744 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76566759 original size:40 final size:40
Alignment explanation
Indices: 76566675--76566859 Score: 157
Period size: 40 Copynumber: 4.6 Consensus size: 40
76566665 TCGAATGATG
* * * * *
76566675 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA-
1 TCCGGGCTAAGT-CCGAAGGCATTTGTAC-GAGTTACTAAAT
* *
76566715 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT-AAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTACGAGTTACTAAAT
* *
76566755 TCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTACGAGTTACTAAAT
* * *
76566795 T-CGGGTTAAGTCCCGAAGGCATTTGTCCGAGTTTCTATAA-
1 TCCGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTA-AAT
*
76566835 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
76566860 AACAAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 31 0.25
40 82 0.67
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTACGAGTTACTAAAT
Found at i:76566881 original size:79 final size:78
Alignment explanation
Indices: 76566675--76566892 Score: 203
Period size: 79 Copynumber: 2.7 Consensus size: 78
76566665 TCGAATGATG
* * *
76566675 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-AAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCAT
* *
76566738 TTGTGCGAGTTACTAAT
62 TTGTCCGAGTTACTAAA
* * * *
76566755 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTA-CTAAATTCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACAAG-TAGCTATA-TCCGGTTAAGT-CCGAAGGCATT
*
76566818 TGTCCGAGTTTCTATAA
63 TGTCCGAGTTACTA-AA
* * *
76566835 T-CGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACAAGTAGCTATATCCGGTT-AAGTCCGAAGG
76566893 TACGTGATTC
Statistics
Matches: 112, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
78 1 0.01
79 64 0.57
80 47 0.42
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACAAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGT
CCGAGTTACTAAA
Found at i:76572551 original size:20 final size:20
Alignment explanation
Indices: 76572528--76572572 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
76572518 AGGGACTAAA
*
76572528 ATGAAAAGTTGTAAAATTTT
1 ATGAAAAGTTCTAAAATTTT
*
76572548 ATGAAAATTTCTAAAATTTT
1 ATGAAAAGTTCTAAAATTTT
76572568 ATGAA
1 ATGAA
76572573 TACATGTGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTT
Found at i:76573624 original size:23 final size:23
Alignment explanation
Indices: 76573570--76573650 Score: 92
Period size: 23 Copynumber: 3.4 Consensus size: 23
76573560 GATCCATGAT
*
76573570 CGGTAAGCTCCTCTTGAGCTGATGAA
1 CGGTAAGCT-CTATTGAGCTGA--AA
*
76573596 CAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCTCTATTGAGCTGAAA
*
76573619 TGGTAAGCTCTATTGAGCTG-AA
1 CGGTAAGCTCTATTGAGCTGAAA
*
76573641 CAGTAAGCTC
1 CGGTAAGCTC
76573651 ATACGAAGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
22 10 0.20
23 20 0.41
25 11 0.22
26 8 0.16
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (23 bp):
CGGTAAGCTCTATTGAGCTGAAA
Found at i:76573649 original size:22 final size:22
Alignment explanation
Indices: 76573592--76573650 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 22
76573582 CTTGAGCTGA
76573592 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
76573614 TGAA-ATGGTAAGCTCTATTGAGC
1 TGAACA--GTAAGCTCTATTGAGC
76573637 TGAACAGTAAGCTC
1 TGAACAGTAAGCTC
76573651 ATACGAAGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.03
22 12 0.35
23 20 0.59
24 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATTGAGC
Found at i:76577939 original size:18 final size:19
Alignment explanation
Indices: 76577905--76577948 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
76577895 GATACAAATT
76577905 ATATATGATGCAAATGAAA
1 ATATATGATGCAAATGAAA
*
76577924 ATATATG-TGCATATGAAA
1 ATATATGATGCAAATGAAA
76577942 AGTATAT
1 A-TATAT
76577949 TCGGCCAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.48, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
ATATATGATGCAAATGAAA
Found at i:76581322 original size:11 final size:10
Alignment explanation
Indices: 76581290--76581343 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
76581280 CATGAGATTT
76581290 TGATAT-ACA
1 TGATATGACA
*
76581299 TGATTTGACA
1 TGATATGACA
76581309 TGATATGCACA
1 TGATATG-ACA
*
76581320 TGATATG-TA
1 TGATATGACA
76581329 TGATATGCACA
1 TGATATG-ACA
76581340 TGAT
1 TGAT
76581344 GTATCCATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:76581419 original size:25 final size:25
Alignment explanation
Indices: 76581391--76581485 Score: 97
Period size: 25 Copynumber: 3.8 Consensus size: 25
76581381 GAGAAAGTGC
* *
76581391 AAAAGGGCTATGCCCTAGTTTATCG
1 AAAAGGGCTATGCCCCAGTTTATCA
*
76581416 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
*
76581441 AAAAGGGCGT-TGCCCCAG-TTAT-T
1 AAAAGGGC-TATGCCCCAGTTTATCA
*
76581464 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
76581486 ATATGATAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
23 6 0.10
24 10 0.17
25 42 0.70
26 2 0.03
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:76588704 original size:8 final size:8
Alignment explanation
Indices: 76588691--76588724 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
76588681 AAATCCATAT
76588691 ATGCCGAA
1 ATGCCGAA
76588699 ATGCCGAA
1 ATGCCGAA
76588707 ATGCCGAA
1 ATGCCGAA
*
76588715 ATGCCAAA
1 ATGCCGAA
76588723 AT
1 AT
76588725 TCTGAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (8 bp):
ATGCCGAA
Found at i:76589373 original size:25 final size:25
Alignment explanation
Indices: 76589304--76589373 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
76589294 GAGGAAGTGC
* * *
76589304 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
76589329 AAAAGGTCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
76589354 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76589374 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:76589386 original size:24 final size:24
Alignment explanation
Indices: 76589354--76589400 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
76589344 TAGTTTACCA
**
76589354 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
76589377 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
76589401 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:76594131 original size:20 final size:20
Alignment explanation
Indices: 76594052--76594131 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
76594042 CGTCTCAACT
* *
76594052 GTAATTCATTCATATAACCA
1 GTAATTCATCCATATAAACA
* *
76594072 GTAGTTCATCCGTATAAACA
1 GTAATTCATCCATATAAACA
* * *
76594092 GTAGTTTAT-TAGTA-ATAACA
1 GTAATTCATCCA-TATA-AACA
76594112 GTAATTCATCCATATAAACA
1 GTAATTCATCCATATAAACA
76594132 CATATCTTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
19 1 0.02
20 43 0.93
21 2 0.04
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (20 bp):
GTAATTCATCCATATAAACA
Found at i:76594337 original size:23 final size:23
Alignment explanation
Indices: 76594303--76594378 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
76594293 TTGAAGAACA
*
76594303 GTAAGCTTTATTGAACTGAAACG
1 GTAAGCTCTATTGAACTGAAACG
* *
76594326 GTAAGCTCTATTGACCTG-AACA
1 GTAAGCTCTATTGAACTGAAACG
* *
76594348 GTAAGCTC-ATACGAGCTGAAACG
1 GTAAGCTCTAT-TGAACTGAAACG
76594371 GTAAGCTC
1 GTAAGCTC
76594379 CAATGAGTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.04
22 16 0.36
23 27 0.60
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTATTGAACTGAAACG
Found at i:76594390 original size:23 final size:23
Alignment explanation
Indices: 76594299--76594402 Score: 77
Period size: 23 Copynumber: 4.5 Consensus size: 23
76594289 TGAGTTGAAG
** * *
76594299 AACAGTAAGCTTTATTGAACTGA
1 AACAGTAAGCTCCAATGAGCTGA
* * * *
76594322 AACGGTAAGCTCTATTGACCTG-
1 AACAGTAAGCTCCAATGAGCTGA
*
76594344 AACAGTAAGCT-CATACGAGCTGA
1 AACAGTAAGCTCCA-ATGAGCTGA
* *
76594367 AACGGTAAGCTCCAATGAGTTGAA
1 AACAGTAAGCTCCAATGAGCTG-A
76594391 AACAGTAAGCTC
1 AACAGTAAGCTC
76594403 TTACGAGCTG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
21 1 0.02
22 15 0.23
23 35 0.54
24 14 0.22
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCCAATGAGCTGA
Found at i:76594398 original size:24 final size:24
Alignment explanation
Indices: 76594318--76594412 Score: 74
Period size: 23 Copynumber: 4.1 Consensus size: 24
76594308 CTTTATTGAA
* * * *
76594318 CTGAAACGGTAAGCTCTAT-TGAC
1 CTGAAACAGTAAGCTCCATACGAG
76594341 CTG-AACAGTAAGCT-CATACGAG
1 CTGAAACAGTAAGCTCCATACGAG
* *
76594363 CTGAAACGGTAAGCTCCA-ATGAG
1 CTGAAACAGTAAGCTCCATACGAG
* *
76594386 TTGAAAACAGTAAGCT-CTTACGAG
1 CTG-AAACAGTAAGCTCCATACGAG
76594410 CTG
1 CTG
76594413 TGGTGAGTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.04
22 15 0.27
23 20 0.36
24 19 0.34
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (24 bp):
CTGAAACAGTAAGCTCCATACGAG
Found at i:76594408 original size:47 final size:47
Alignment explanation
Indices: 76594289--76594412 Score: 146
Period size: 45 Copynumber: 2.7 Consensus size: 47
76594279 AAGCTCCTGT
* * * *
76594289 TGAGTTGAAGAACAGTAAGCT-TTATTGAACTGAAACGGTAAGCTCTAT
1 TGAGTTGAA-AACAGTAAGCTCTTA-CGAGCTGAAACGGTAAGCTCCAA
** *
76594337 TGACCTG--AACAGTAAGCTCATACGAGCTGAAACGGTAAGCTCCAA
1 TGAGTTGAAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
76594382 TGAGTTGAAAACAGTAAGCTCTTACGAGCTG
1 TGAGTTGAAAACAGTAAGCTCTTACGAGCTG
76594413 TGGTGAGTTT
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 35 0.56
46 2 0.03
47 21 0.33
48 5 0.08
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (47 bp):
TGAGTTGAAAACAGTAAGCTCTTACGAGCTGAAACGGTAAGCTCCAA
Found at i:76594579 original size:23 final size:24
Alignment explanation
Indices: 76594545--76594603 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
76594535 ACATTTAATG
*
76594545 ATCA-ATA-ATTCAATT-TATCAA
1 ATCATATACATTCAATTCAATCAA
*
76594566 ATCATATACATTCAATTCAATTAA
1 ATCATATACATTCAATTCAATCAA
76594590 AT-ATATACATTCAA
1 ATCATATACATTCAA
76594604 ATACTCAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 20 0.61
24 6 0.18
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.37
Consensus pattern (24 bp):
ATCATATACATTCAATTCAATCAA
Found at i:76598731 original size:18 final size:18
Alignment explanation
Indices: 76598708--76598745 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76598698 AAATGTAATT
**
76598708 TTAACATTTATGTAACCA
1 TTAACATTTACATAACCA
76598726 TTAACATTTACATAACCA
1 TTAACATTTACATAACCA
76598744 TT
1 TT
76598746 TCAATCCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (18 bp):
TTAACATTTACATAACCA
Found at i:76603509 original size:24 final size:24
Alignment explanation
Indices: 76603465--76603510 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
76603455 TTAGAAATGG
*
76603465 AATTAAATGGTTAATGATATATAC
1 AATTAAATGCTTAATGATATATAC
*
76603489 AATTAAAT-CTTATTGAGTATAT
1 AATTAAATGCTTAATGA-TATAT
76603511 TTTCTTAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.41
Consensus pattern (24 bp):
AATTAAATGCTTAATGATATATAC
Found at i:76622197 original size:23 final size:23
Alignment explanation
Indices: 76622167--76622247 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 23
76622157 CTGATGGACA
76622167 GTAAGCTCT-ATTGAGCTGAAATG
1 GTAAGCTCTGA-TGAGCTGAAATG
**
76622190 GTAAGCTCTGATGAGCTGAAAACA
1 GTAAGCTCTGATGAGCTG-AAATG
* *
76622214 GTAAGCTCTTACGAGCTGATATATCG
1 GTAAGCTCTGATGAGCTGA-A-AT-G
76622240 GTAAGCTC
1 GTAAGCTC
76622248 ATACGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 17 0.36
24 21 0.45
25 1 0.02
26 8 0.17
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (23 bp):
GTAAGCTCTGATGAGCTGAAATG
Found at i:76622222 original size:24 final size:23
Alignment explanation
Indices: 76622164--76622232 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 23
76622154 GAGCTGATGG
76622164 ACAGTAAGCTCTATTGAGCTG-AA
1 ACAGTAAGCTCTA-TGAGCTGAAA
**
76622187 ATGGTAAGCTCTGATGAGCTGAAA
1 ACAGTAAGCTCT-ATGAGCTGAAA
*
76622211 ACAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTC-TATGAGCTGA
76622233 TATATCGGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
23 17 0.45
24 20 0.53
25 1 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTATGAGCTGAAA
Found at i:76622294 original size:30 final size:30
Alignment explanation
Indices: 76622253--76622319 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 30
76622243 AGCTCATACG
76622253 AATTTA-CACATTCAGCATTCGATCTATTC
1 AATTTAGCACATTCAGCATTCGATCTATTC
* *
76622282 AATTTAGCACATTCAGCATTTGGTCTATTC
1 AATTTAGCACATTCAGCATTCGATCTATTC
76622312 AATTTAGC
1 AATTTAGC
76622320 CTATAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
29 6 0.17
30 29 0.83
ACGTcount: A:0.30, C:0.21, G:0.10, T:0.39
Consensus pattern (30 bp):
AATTTAGCACATTCAGCATTCGATCTATTC
Found at i:76625240 original size:40 final size:40
Alignment explanation
Indices: 76625184--76625375 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
76625174 CGAATGATAA
*
76625184 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
76625224 TCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
76625264 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* * *
76625304 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* * *
76625344 CTGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76625376 AGCTATATCC
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
40 136 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:76632473 original size:40 final size:40
Alignment explanation
Indices: 76632418--76632609 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
76632408 CGGATGATAA
*
76632418 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
76632458 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
76632498 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACCAAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
76632538 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* *
76632578 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76632610 AGCTATATCC
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 138 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:76637645 original size:33 final size:33
Alignment explanation
Indices: 76637603--76637668 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
76637593 TTACCAAATA
76637603 TGAGAATTTTTGATTTCTTAATTCTAATTAGAG
1 TGAGAATTTTTGATTTCTTAATTCTAATTAGAG
76637636 TGAGAATTTTTGATTTCTTAATTCTAATTAGAG
1 TGAGAATTTTTGATTTCTTAATTCTAATTAGAG
76637669 ACTAAATGAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (33 bp):
TGAGAATTTTTGATTTCTTAATTCTAATTAGAG
Found at i:76638125 original size:46 final size:46
Alignment explanation
Indices: 76637976--76638192 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 46
76637966 TGTGTGAACA
* * * * *
76637976 AGTGTAAGACATGGCTGGGACATGCATCGGCCAC-ATTATGAAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * *
76638022 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
76638070 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* * * * *
76638116 AGTGCAAGACATGTCTGGGACATGCGTCGG-CTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
*
76638162 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
76638193 ACACTTTACC
Statistics
Matches: 143, Mismatches: 20, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.02
46 70 0.49
47 41 0.29
48 28 0.20
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:76638192 original size:94 final size:94
Alignment explanation
Indices: 76637976--76638192 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 94
76637966 TGTGTGAACA
* * * *
76637976 AGTGTAAGACATGGCTGGGACATGCATCGGCCACATTATGAAAGCTAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCCAGTGCAAGACCATGTCTGG
76638041 GACATGGCATCGGCATTGAGACGAGTGCT
66 GACATGGCATCGGCATTGAGACGAGTGCT
* *
76638070 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAAGCCAGTGCAAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAAAGCCAGTGCAAGACCATGTCTG
* *
76638133 GGACAT-GCGTCGGC-TATGAGATGA-TAG-T
65 GGACATGGCATCGGCAT-TGAGACGAGT-GCT
*
76638161 CAGTGTAAGACCATGTCTAGGACATGGCATCG
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCG
76638193 ACACTTTACC
Statistics
Matches: 108, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
91 3 0.03
92 24 0.22
93 27 0.25
94 53 0.49
95 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAAGCCAGTGCAAGACCATGTCTGG
GACATGGCATCGGCATTGAGACGAGTGCT
Found at i:76639195 original size:28 final size:28
Alignment explanation
Indices: 76639155--76639212 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
76639145 CACAAGGGCT
*
76639155 AGGACATGGGCGTGT-CATGGCCGTGTGA
1 AGGACACGGGCGTGTCCA-GGCCGTGTGA
76639183 AGGACACGGGCGTGTGCCAGGCCGTGTGA
1 AGGACACGGGCGTGT-CCAGGCCGTGTGA
76639212 A
1 A
76639213 AACCCTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 11 0.41
30 2 0.07
ACGTcount: A:0.19, C:0.21, G:0.43, T:0.17
Consensus pattern (28 bp):
AGGACACGGGCGTGTCCAGGCCGTGTGA
Found at i:76643697 original size:50 final size:49
Alignment explanation
Indices: 76643579--76643754 Score: 167
Period size: 50 Copynumber: 3.5 Consensus size: 49
76643569 CTGGTACGCA
* * ** *
76643579 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* * *
76643628 TAGTACCCTGGACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
76643678 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
76643729 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76643755 GTCGACCTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 27 0.26
50 38 0.37
51 36 0.35
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:76643762 original size:101 final size:99
Alignment explanation
Indices: 76643579--76643765 Score: 243
Period size: 101 Copynumber: 1.9 Consensus size: 99
76643569 CTGGTACGCA
* * ** *
76643579 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATGTAGTACCCTGGACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTACCCTGCACTTA
76643644 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGTGACCTCACCATCTAATACACG
* * * *
76643678 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTACCCTGCAC
76643742 TTAGTACTACACA-GTCGACCTCAC
63 TTAGTACTACACACGT-GACCTCAC
76643766 AATAGATCAT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
100 2 0.03
101 39 0.52
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTACCCTGCACTTA
GTACTACACACGTGACCTCACCATCTAATACACG
Found at i:76649056 original size:50 final size:49
Alignment explanation
Indices: 76648933--76649062 Score: 181
Period size: 50 Copynumber: 2.6 Consensus size: 49
76648923 CTGGTACGCA
* * **
76648933 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACAAG
* *
76648982 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACAAG
76649032 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
76649063 TCACAGTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
49 29 0.40
50 40 0.55
51 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACAAG
Found at i:76649116 original size:101 final size:99
Alignment explanation
Indices: 76648933--76649119 Score: 252
Period size: 101 Copynumber: 1.9 Consensus size: 99
76648923 CTGGTACGCA
* *
76648933 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACAAGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACAAGTAGTAGCCTGCACTTA
*
76648998 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
76649032 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA-TAGTAGCCTGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTAC-AAGTAGTAGCCTGCA
* *
76649095 CTTAGTACTGCACATGCGACCTCAC
62 CTTAGTACTACACACGCGACCTCAC
76649120 AATAGATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
101 41 0.54
102 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACAAGTAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:76665899 original size:39 final size:39
Alignment explanation
Indices: 76665855--76665982 Score: 175
Period size: 39 Copynumber: 3.3 Consensus size: 39
76665845 TATGAGATTG
*
76665855 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * *
76665894 AAAATATCCGGACATGAGATTCGTAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
76665933 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
76665972 AAAATATCCGG
1 AAAATATCCGG
76665983 GTTAAAGACC
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:76666000 original size:78 final size:76
Alignment explanation
Indices: 76665854--76666008 Score: 177
Period size: 78 Copynumber: 2.0 Consensus size: 76
76665844 GTATGAGATT
* * ** *
76665854 GAAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGAAAAATATCCGGACATGAGATTCGTA
1 GAAAATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
*
76665919 GGCTATATGCTA
66 GGCT-TACGCTA
* * * **
76665931 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
76665995 CAGGCTTACGCTA
64 CAGGCTTACGCTA
76666008 G
1 G
76666009 TAATGTATTC
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
77 12 0.18
78 53 0.82
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCACAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
GGCTTACGCTA
Found at i:76667139 original size:54 final size:54
Alignment explanation
Indices: 76667064--76667201 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
76667054 GTGACTAAGT
* *
76667064 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
76667118 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
76667172 CACTAGATCAGATAATTGTGGCATAGCCAC
1 CACCAGATCAGATAATTGTGGCATAGCCAC
76667202 TAGGACGCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 4 0.05
54 74 0.95
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:76667204 original size:27 final size:26
Alignment explanation
Indices: 76667046--76667201 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 26
76667036 GCGAGGCTGC
* *
76667046 CAGATATTGTGACTA-AGTCACCAGATA
1 CAGATATTGTGGC-AGAGCCACCAGA-A
*
76667073 TAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
76667099 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
* *
76667126 CAGATAATCGTGGCATAGCCACCAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAA
* *
76667153 CAGATATATGTGGCAGAGCCACTAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAA
*
76667180 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
76667202 TAGGACGCTT
Statistics
Matches: 111, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:76668856 original size:26 final size:26
Alignment explanation
Indices: 76668826--76668907 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
76668816 TGAAAATCCC
76668826 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76668852 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
76668878 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
76668904 ATCA
1 ATCA
76668908 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:76677037 original size:39 final size:39
Alignment explanation
Indices: 76676993--76677116 Score: 160
Period size: 39 Copynumber: 3.2 Consensus size: 39
76676983 TATGAGATTG
*
76676993 AAAATATTCGGACATGAGGTCCACAGGCTATATGCTGGA
1 AAAATATTCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
76677032 AAAATATTCGGACATG-GGATCCGCAGGATATATGCTAGA
1 AAAATATTCGGACATGAGG-TCCGCAGGCTATATGCTGGA
* * * **
76677071 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATTCGGACATGAGGTCCGCAGGCTATATGCTGGA
76677110 AAAATAT
1 AAAATAT
76677117 CCGGGTTTAA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
38 2 0.03
39 68 0.94
40 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (39 bp):
AAAATATTCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:76688358 original size:23 final size:23
Alignment explanation
Indices: 76688332--76688379 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
76688322 TTCAATTCCT
76688332 TTTTTCTTTTATTTTTT-TCTCTC
1 TTTTT-TTTTATTTTTTCTCTCTC
* *
76688355 TTTTTTTTTCTTTTTTCTTTCTC
1 TTTTTTTTTATTTTTTCTCTCTC
76688378 TT
1 TT
76688380 CTTCCTCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTTTTTATTTTTTCTCTCTC
Found at i:76692212 original size:13 final size:13
Alignment explanation
Indices: 76692194--76692221 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
76692184 CATATTTTTA
76692194 TTATTTTTCATCT
1 TTATTTTTCATCT
76692207 TTATTTTTCATCT
1 TTATTTTTCATCT
76692220 TT
1 TT
76692222 CCAATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTATTTTTCATCT
Found at i:76697243 original size:47 final size:47
Alignment explanation
Indices: 76697192--76697309 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 47
76697182 AAGTCAAAGC
*
76697192 CATGTCCCAGACATGGTCTTACACTGACTATCGCCTCA-C-A-GCCAACG
1 CATGTCCCAGACAT-GTCTTACACTGACT-T-ACCTCATCGAGGCCAACG
* * * *
76697239 CATGTCCCAAACATGTCTTACACTGACTTACTTCATCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
76697286 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
76697310 CGCACTCATC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 4 0.06
45 2 0.03
46 15 0.24
47 41 0.66
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGACTTACCTCATCGAGGCCAACG
Found at i:76700355 original size:11 final size:11
Alignment explanation
Indices: 76700341--76700372 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
76700331 CTTATTATAC
76700341 TATTATATTAT
1 TATTATATTAT
76700352 TATTATATTAT
1 TATTATATTAT
76700363 TATTATATTA
1 TATTATATTA
76700373 AACTAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTATATTAT
Found at i:76700533 original size:35 final size:35
Alignment explanation
Indices: 76700487--76700561 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
76700477 AATTGGTAAG
76700487 TCTATTTAATTTCTATTCTT-ATAATTTTTGAGTTT
1 TCTATTTAATTTCTATTCTTGA-AATTTTTGAGTTT
*
76700522 TCTATTTAATTTCTTTTCTTGAAATTTTTGAGTTT
1 TCTATTTAATTTCTATTCTTGAAATTTTTGAGTTT
76700557 T-TATT
1 TCTATT
76700562 ATCCTAGAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
34 4 0.11
35 33 0.87
36 1 0.03
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.64
Consensus pattern (35 bp):
TCTATTTAATTTCTATTCTTGAAATTTTTGAGTTT
Found at i:76720767 original size:27 final size:28
Alignment explanation
Indices: 76720727--76720839 Score: 153
Period size: 27 Copynumber: 4.2 Consensus size: 28
76720717 AGCATGGCTG
* *
76720727 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
76720753 CCAGATACAGATA-TTGTGGTAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
76720780 CCAGAAACAGATATTTGTGGTAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
76720808 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
76720835 CCAGA
1 CCAGA
76720840 ATGCTTCCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.06
27 55 0.70
28 19 0.24
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:76720810 original size:55 final size:54
Alignment explanation
Indices: 76720727--76720840 Score: 160
Period size: 55 Copynumber: 2.1 Consensus size: 54
76720717 AGCATGGCTG
* *
76720727 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
**
76720780 CCAGAAACAGATATTTGTGGTAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
76720835 CCAGAA
1 CCAGAA
76720841 TGCTTCCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
53 4 0.07
54 14 0.26
55 36 0.67
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (54 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:76727563 original size:40 final size:40
Alignment explanation
Indices: 76727480--76727625 Score: 156
Period size: 40 Copynumber: 3.6 Consensus size: 40
76727470 TTGAATGATG
* * * * *
76727480 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
76727520 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76727560 TCC-GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76727601 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
76727626 AAACGAGTAG
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
39 3 0.03
40 77 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76727649 original size:80 final size:80
Alignment explanation
Indices: 76727487--76727649 Score: 181
Period size: 80 Copynumber: 2.0 Consensus size: 80
76727477 ATGTCCGGGC
* **
76727487 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
76727552 TTACTAAATCCGAGT
66 TTACTAAATCCGAGT
* * * * *
76727567 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAAAC
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG-AAC
*
76727630 GAG-TAGCTATATCCG-GT
63 GAGTTA-CTAAATCCGAGT
76727647 TAA
1 TAA
76727650 ATTCTGAAGG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
79 1 0.01
80 50 0.71
81 19 0.27
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (80 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAACGAG
TTACTAAATCCGAGT
Found at i:76735498 original size:40 final size:40
Alignment explanation
Indices: 76735415--76735600 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
76735405 TTGAATGATG
* * * *
76735415 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76735455 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76735495 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76735535 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76735576 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76735601 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76735607 original size:80 final size:79
Alignment explanation
Indices: 76735468--76735633 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
76735458 GGACTAAGAT
* **
76735468 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
76735532 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
76735548 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
76735612 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
76735627 CCGAAGG
1 CCGAAGG
76735634 TACGTGATTT
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:76756274 original size:27 final size:26
Alignment explanation
Indices: 76756239--76756349 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 26
76756229 AGCATGGCTG
* *
76756239 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
76756265 CCACATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
76756292 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
76756319 CCAGAAACAGATATTTGTGGCATG-GCCA
1 CCAG-AACAGATA-TTGTGGCA-GAGCCA
76756347 CCA
1 CCA
76756350 AAACGCTTCT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
26 11 0.15
27 40 0.53
28 24 0.32
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:76762766 original size:40 final size:40
Alignment explanation
Indices: 76762720--76762944 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
76762710 CTTGCGCAAG
* * *
76762720 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76762760 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
76762800 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76762840 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
76762880 GCCTTCGGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
*
76762921 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76762945 CATTCGAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 127 0.80
41 27 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76770505 original size:40 final size:40
Alignment explanation
Indices: 76770460--76770684 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
76770450 CTTGCGCAAG
* * *
76770460 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
76770500 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
76770540 GCCTTCGGGTTTTAGCCTGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
76770580 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTCGCTCGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
76770620 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
76770661 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
76770685 CATTCGAATA
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 28 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:76772507 original size:23 final size:23
Alignment explanation
Indices: 76772477--76772523 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76772467 AAACGTCAAG
76772477 ATTACCTCTTTAATGTAATCTCT
1 ATTACCTCTTTAATGTAATCTCT
76772500 ATTACCTCTTTAATGTAATCTCT
1 ATTACCTCTTTAATGTAATCTCT
76772523 A
1 A
76772524 CTCTGGTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.04, T:0.47
Consensus pattern (23 bp):
ATTACCTCTTTAATGTAATCTCT
Found at i:76776894 original size:7 final size:7
Alignment explanation
Indices: 76776856--76776922 Score: 54
Period size: 7 Copynumber: 9.9 Consensus size: 7
76776846 CTTTAACTTT
76776856 TTTCTTC
1 TTTCTTC
76776863 -TT-TTC
1 TTTCTTC
*
76776868 TCTTCTTT
1 T-TTCTTC
76776876 TATTCTTTC
1 T-TTC-TTC
76776885 TTTCTTC
1 TTTCTTC
76776892 TTTCTTC
1 TTTCTTC
*
76776899 TTTCATC
1 TTTCTTC
76776906 TTTC-T-
1 TTTCTTC
76776911 TTTCTT-
1 TTTCTTC
76776917 TTTCTT
1 TTTCTT
76776923 TTTGCTTGCT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
5 7 0.14
6 10 0.20
7 22 0.43
8 9 0.18
9 3 0.06
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTCTTC
Found at i:76777652 original size:63 final size:63
Alignment explanation
Indices: 76777472--76777716 Score: 215
Period size: 63 Copynumber: 3.9 Consensus size: 63
76777462 TGGTAGGCCG
* * * * * * * * * * * * *
76777472 TGTAACTTACTATTTTGGATTTTGTGCCACACGGGCTAAGGACATTGGCTTGTCTCTAACCCT
1 TGTAACTCATTATTTTGGATTTAGGGTCACATGGCCTAGGGACATGGGCGTGTGTCTAGCCCA
* * * * *
76777535 TGTAACTCATTATTTTAGATTTAGGGTCACAAGGACTAGGTACATGGGCTTGTGTCTAGCCCA
1 TGTAACTCATTATTTTGGATTTAGGGTCACATGGCCTAGGGACATGGGCGTGTGTCTAGCCCA
* * * * **
76777598 TGTAACTCACTGTTTTGGATTTAAGGTCACATGGCCTAGGGACATGGGCGTGTGTCCAAG-CTG
1 TGTAACTCATTATTTTGGATTTAGGGTCACATGGCCTAGGGACATGGGCGTGTGT-CTAGCCCA
* * *
76777661 TGTAACTCATTCTTTTGGATTTAGGGTCATATTGGCC-AGGGACATGGGAGTGTGTC
1 TGTAACTCATTATTTTGGATTTAGGGTCACA-TGGCCTAGGGACATGGGCGTGTGTC
76777717 CACGCCATGT
Statistics
Matches: 150, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
62 1 0.01
63 141 0.94
64 8 0.05
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (63 bp):
TGTAACTCATTATTTTGGATTTAGGGTCACATGGCCTAGGGACATGGGCGTGTGTCTAGCCCA
Found at i:76778135 original size:21 final size:21
Alignment explanation
Indices: 76778106--76778145 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
76778096 TCAAGCTGAT
* *
76778106 AGGGGAACACGCCCGTGTGGA
1 AGGGAAACACACCCGTGTGGA
*
76778127 AGGGAAACATACCCGTGTG
1 AGGGAAACACACCCGTGTG
76778146 TCTTCTTAAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.23, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGAAACACACCCGTGTGGA
Found at i:76779358 original size:143 final size:142
Alignment explanation
Indices: 76779101--76779388 Score: 504
Period size: 143 Copynumber: 2.0 Consensus size: 142
76779091 ATATCACAAG
*
76779101 TATAAGCCAAAGATTACAATATCGTCCAAAAATCATTTCATAGCTAGTACTTACTCATGTCATTC
1 TATAAGCCAAAGATTACAATATCATCCAAAAATCATTTCATAGCTAGTACTTACTCATGTCATTC
* *
76779166 TAACCATCAAGGCAACATAACTAGACTCGTATCTCATGAGTTTCAAATAAGATCCTGTACCACTC
66 TAACCATCAAGGCAACATAACTAGACTCATATCTCATGAGTTTCAAATAAGAACCTGTACCACTC
76779231 ACAACATGATTA
131 ACAACATGATTA
76779243 TATAAGCCAAAGATTACAATATCATCCCAAAAATCATTTCATAGCTAGTACTTACTCATGTCATT
1 TATAAGCCAAAGATTACAATATCAT-CCAAAAATCATTTCATAGCTAGTACTTACTCATGTCATT
* * * *
76779308 TTTACCATCAAGGCAACATAACTAGACTCATATCTTATGAGTTTCAAATAATAACCTGTACCACT
65 CTAACCATCAAGGCAACATAACTAGACTCATATCTCATGAGTTTCAAATAAGAACCTGTACCACT
76779373 CACAACATGATTA
130 CACAACATGATTA
76779386 TAT
1 TAT
76779389 CATTCCATAT
Statistics
Matches: 138, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
142 24 0.17
143 114 0.83
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (142 bp):
TATAAGCCAAAGATTACAATATCATCCAAAAATCATTTCATAGCTAGTACTTACTCATGTCATTC
TAACCATCAAGGCAACATAACTAGACTCATATCTCATGAGTTTCAAATAAGAACCTGTACCACTC
ACAACATGATTA
Found at i:76779649 original size:96 final size:95
Alignment explanation
Indices: 76779480--76779758 Score: 364
Period size: 96 Copynumber: 2.9 Consensus size: 95
76779470 AAGAGGGTGA
* * * *
76779480 ATTGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGACCAATGCCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATACCGATGCCATGTC
76779545 CCAGACATGGTCTTACACTAGCTCTCA-TA-
65 CCAGACATGGTCTTACACTAGCTCTCATTAC
* * *
76779574 ATGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATG
1 AT-T-GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC-ATACCGATGCCATG
* *
76779639 TCCCAGACATGGCCTTACACTGGCTCTCATTAC
63 TCCCAGACATGGTCTTACACTAGCTCTCATTAC
* * * *
76779672 ATTGCCGATGCCATGTTCCAAACATGGTCTTAAACTGGCTCTCATATCATGGCCGATGTCATGTC
1 ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAT-ACCGATGCCATGTC
* *
76779737 CCATACATGGTCTTATACTAGC
65 CCAGACATGGTCTTACACTAGC
76779759 GCACATATCA
Statistics
Matches: 159, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
94 2 0.01
95 3 0.02
96 149 0.94
97 3 0.02
98 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (95 bp):
ATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCATACCGATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTCATTAC
Found at i:76779745 original size:144 final size:144
Alignment explanation
Indices: 76779485--76779768 Score: 387
Period size: 144 Copynumber: 2.0 Consensus size: 144
76779475 GGTGAATTGT
* * *
76779485 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGACCAATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCACATGTCGAGACCAATGCCATGTCCCAAA
* *
76779550 CATGGTCTTACACTAGCTCTCATAATGTGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
66 CATGGTCTTAAACTAGCTCTCATAATATGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
76779615 GCACATATCAATAC
131 GCACATATCAATAC
* * * *
76779629 CGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCAT-TAC-ATTG-CCGATGCCATGTTCC
1 CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCACATGT-CGA--GACCAATGCCATGTCCC
* * * *
76779691 AAACATGGTCTTAAACTGGCTCTCAT-ATCATGGCCGATGTCATGTCCCATACATGGTCTTATAC
63 AAACATGGTCTTAAACTAGCTCTCATAAT-ATGGCCGATGCCATGTCCCAAACATGGTCTTACAC
76779755 TAGCGCACATATCA
127 TAGCGCACATATCA
76779769 CCCAAATGTC
Statistics
Matches: 123, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
143 4 0.03
144 118 0.96
145 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGCCTTACACTGGCTCACATGTCGAGACCAATGCCATGTCCCAAA
CATGGTCTTAAACTAGCTCTCATAATATGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGC
GCACATATCAATAC
Found at i:76779768 original size:48 final size:48
Alignment explanation
Indices: 76779485--76779768 Score: 297
Period size: 48 Copynumber: 5.9 Consensus size: 48
76779475 GGTGAATTGT
* * * *
76779485 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATC-ATGGC
* * * *
76779533 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-ATCATGGC
* *
76779581 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAAT-AC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATC-ATGGC
* * * * *
76779629 CGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCAT-TACATTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAT-CATGGC
* * * *
76779677 CGATGCCATGTTCCAAACATGGTCTTAAACTGGCTCTCATATCATGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCATGGC
* * * *
76779725 CGATGTCATGTCCCATACATGGTCTTATACTAGCGCACATATCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
76779769 CCCAAATGTC
Statistics
Matches: 197, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
47 5 0.03
48 189 0.96
49 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCATGGC
Found at i:76782451 original size:25 final size:25
Alignment explanation
Indices: 76782422--76782469 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
76782412 TTATAATATG
* *
76782422 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76782447 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76782470 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Done.