Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 227 of 362
Found at i:76782564 original size:20 final size:20
Alignment explanation
Indices: 76782506--76782568 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
76782496 ATTTTGATAA
*
76782506 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
*
76782526 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
76782546 ACATGATATGTATGGTATGC
1 ACATGATATGTATGATATGC
76782566 ACA
1 ACA
76782569 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76782708 original size:23 final size:24
Alignment explanation
Indices: 76782622--76782746 Score: 173
Period size: 24 Copynumber: 5.2 Consensus size: 24
76782612 GAGGAAGTGC
* *
76782622 AAAAGGGCTTATGCTCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76782646 AAAAGGGCTTATGCCCCAGTCATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76782670 AAAAAGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
76782694 -AAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76782717 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
76782742 AAAAG
1 AAAAG
76782747 AGGCCAGGCC
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
23 26 0.29
24 43 0.48
25 13 0.14
26 8 0.09
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76782993 original size:31 final size:31
Alignment explanation
Indices: 76782958--76783021 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76782948 CGTTTACAGT
76782958 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
76782989 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76783020 AA
1 AA
76783022 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76790679 original size:20 final size:20
Alignment explanation
Indices: 76790621--76790683 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
76790611 ATTTTGATAA
*
76790621 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
*
76790641 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
76790661 ACATGATATGGATGGTATGC
1 ACATGATATGTATGATATGC
76790681 ACA
1 ACA
76790684 CGAGATGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:76790876 original size:25 final size:24
Alignment explanation
Indices: 76790737--76790880 Score: 195
Period size: 24 Copynumber: 6.0 Consensus size: 24
76790727 GAGGAAGTGC
*
76790737 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
76790761 AATAGGGCTTATGCCCCAGTCATT
1 AAAAGGGCTTATGCCCCAGTTATT
76790785 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76790809 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
76790832 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
76790857 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
76790881 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
23 29 0.27
24 49 0.45
25 21 0.19
26 9 0.08
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:76791108 original size:31 final size:31
Alignment explanation
Indices: 76791073--76791136 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
76791063 CGTTTCCAGT
76791073 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
76791104 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
76791135 AA
1 AA
76791137 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:76794313 original size:48 final size:48
Alignment explanation
Indices: 76794261--76794579 Score: 329
Period size: 48 Copynumber: 6.6 Consensus size: 48
76794251 AGTGAGTTAT
* * * * * *
76794261 CGATGCCGTGTTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
* * ** *
76794309 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
* * * *
76794357 TGATGCCATGTCCCTGACATGGTCTTACACTGGCTCTCATAGT-GTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TCGAGGC
* * * * * * *
76794405 CGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
*
76794453 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TAC-ATTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-CGA-GGC
** * * * *
76794501 CGATGTAATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
76794549 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
76794580 AGTGCACGTA
Statistics
Matches: 222, Mismatches: 43, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
47 3 0.01
48 217 0.98
49 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
Found at i:76794521 original size:144 final size:142
Alignment explanation
Indices: 76794260--76794592 Score: 427
Period size: 144 Copynumber: 2.3 Consensus size: 142
76794250 GAGTGAGTTA
* * * * * * *
76794260 TCGATGCCGTGTTCCAAACATGGTCTTACATTGGCTCACATGTCGAGGCCGATGCCATGTCCCAG
1 TCGATGCCATG-TCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAG
* * **
76794325 ACATGGTCTTACACTAGCTCTCATCTTAATGCTGATGCCATGTCCCTGACATGGTCTTACACTGG
65 ACATGGTCTTACACTAGCTCTCA-CTTAATGCCGATGCAATGTCCCAAACATGGTCTTACACTGG
76794390 CTCTCATAGT-GTGG
129 CTCTCATA-TCGTGG
* *
76794404 TCGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAATGTCGATGCCATGTCCCAG
1 TCGATGCCATGTCC-AGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAG
* * *
76794469 ACATGGTCTTACACTGGCTCTCA-TTACATTGCCGATGTAATGTTCCAAACATGGTCTTACACTG
65 ACATGGTCTTACACTAGCTCTCACTTA-A-TGCCGATGCAATGTCCCAAACATGGTCTTACACTG
76794533 GCTCTCATATCGTGG
128 GCTCTCATATCGTGG
* *
76794548 TCGATGCCATGTCCCAGACATGGTCTTACACTAGTGCACGTATCA
1 TCGATGCCATGT-CCAGACATGGTCTTACACTAGCGCACATATCA
76794593 CCCAAATGTC
Statistics
Matches: 166, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
142 3 0.02
143 5 0.03
144 156 0.94
145 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (142 bp):
TCGATGCCATGTCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTCTCACTTAATGCCGATGCAATGTCCCAAACATGGTCTTACACTGGCT
CTCATATCGTGG
Found at i:76798084 original size:27 final size:29
Alignment explanation
Indices: 76798041--76798097 Score: 75
Period size: 27 Copynumber: 2.0 Consensus size: 29
76798031 GTCTAAATAG
*
76798041 GTGTTTAAAAAGTTGTTTGAA-AAG-GTT
1 GTGTTCAAAAAGTTGTTTGAATAAGAGTT
76798068 GTGTTCAAACAAG-TGTTTGAATAAGAGTT
1 GTGTTCAAA-AAGTTGTTTGAATAAGAGTT
76798097 G
1 G
76798098 AGTCATCCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 16 0.62
28 6 0.23
29 4 0.15
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (29 bp):
GTGTTCAAAAAGTTGTTTGAATAAGAGTT
Found at i:76799351 original size:43 final size:43
Alignment explanation
Indices: 76799285--76799373 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 43
76799275 ACTAATGTTT
76799285 CAAAATATGAATTTGATGAGAGAATAATC-AAATAGTAACCGTG
1 CAAAATATGAATTTGATGAGAGAATAATCAAAAT-GTAACCGTG
*
76799328 CAAAGTATGAATTTGATGAGAGAATAATCAAAATGTAACCGTG
1 CAAAATATGAATTTGATGAGAGAATAATCAAAATGTAACCGTG
76799371 CAA
1 CAA
76799374 GGCTGAGATG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 40 0.91
44 4 0.09
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (43 bp):
CAAAATATGAATTTGATGAGAGAATAATCAAAATGTAACCGTG
Found at i:76804878 original size:17 final size:18
Alignment explanation
Indices: 76804820--76804880 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
76804810 GTCATCTTAC
*
76804820 TATATTATATAATGTTATA
1 TATATTATATAGT-TTATA
* *
76804839 TCATATCATATAGTATATAA
1 T-ATATTATATAGTTTAT-A
76804859 TATATTA-ATAGTTTATA
1 TATATTATATAGTTTATA
76804876 TATAT
1 TATAT
76804881 GCATCAATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 6 0.17
18 8 0.23
19 9 0.26
20 12 0.34
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (18 bp):
TATATTATATAGTTTATA
Found at i:76806631 original size:42 final size:42
Alignment explanation
Indices: 76806553--76806668 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 42
76806543 GCTCGCATGA
* * * * ** *
76806553 CCTGGACACATGCCCGTGTCCTTACCCGAATGACTCACATAG
1 CCTGGGCACATGCCCATGTCCTCACTCGTGTAACTCACATAG
*
76806595 CCTGGGCACATGCCCATGTCCTCACTCGTGTAACTCACATGG
1 CCTGGGCACATGCCCATGTCCTCACTCGTGTAACTCACATAG
* * *
76806637 CCTAGGTACACGCCCATGTCCTCTACTCGTGT
1 CCTGGGCACATGCCCATGTCCTC-ACTCGTGT
76806669 GGTTCTAAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
42 54 0.87
43 8 0.13
ACGTcount: A:0.20, C:0.36, G:0.20, T:0.24
Consensus pattern (42 bp):
CCTGGGCACATGCCCATGTCCTCACTCGTGTAACTCACATAG
Found at i:76809163 original size:32 final size:32
Alignment explanation
Indices: 76809123--76809191 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
76809113 ATTTTCACAA
76809123 CATTCAATAATTCATCATTTGAATACAAAATT
1 CATTCAATAATTCATCATTTGAATACAAAATT
76809155 CATTCAATAATTCATCATTTGAATACAAAATT
1 CATTCAATAATTCATCATTTGAATACAAAATT
76809187 CATTC
1 CATTC
76809192 CATGTCATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (32 bp):
CATTCAATAATTCATCATTTGAATACAAAATT
Found at i:76811419 original size:13 final size:13
Alignment explanation
Indices: 76811403--76811435 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76811393 TTTAATTAAA
*
76811403 TTAGTTAATTAGT
1 TTAGATAATTAGT
76811416 TTAGATAATTAGT
1 TTAGATAATTAGT
76811429 TTA-ATAA
1 TTAGATAA
76811436 ACAAACGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76816848 original size:20 final size:21
Alignment explanation
Indices: 76816823--76816862 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
76816813 CTCCTATCTT
76816823 TTTATTCTTA-TTATTTTTTA
1 TTTATTCTTATTTATTTTTTA
*
76816843 TTTATTTTTATTTATTTTTT
1 TTTATTCTTATTTATTTTTT
76816863 TCATTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTATTCTTATTTATTTTTTA
Found at i:76816850 original size:10 final size:10
Alignment explanation
Indices: 76816823--76816880 Score: 57
Period size: 10 Copynumber: 5.8 Consensus size: 10
76816813 CTCCTATCTT
*
76816823 TTTATTCTTA
1 TTTATTTTTA
76816833 -TTATTTTTTA
1 TTTA-TTTTTA
76816843 TTTATTTTTA
1 TTTATTTTTA
76816853 TTTATTTTT-
1 TTTATTTTTA
* *
76816862 TTCATTTTCTT
1 TTTATTTT-TA
76816873 TTTATTTT
1 TTTATTTT
76816881 CAGTTCTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 10 0.24
10 21 0.51
11 10 0.24
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:76816857 original size:30 final size:30
Alignment explanation
Indices: 76816823--76816905 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
76816813 CTCCTATCTT
*
76816823 TTTATTCTTATTATTTT-TTATTTATTTTTA-
1 TTTATT-TTATTATTTTCTT-TTTATTTTCAG
*
76816853 TTTATTTTTTTCATTTTCTTTTTATTTTCAG
1 TTTATTTTATT-ATTTTCTTTTTATTTTCAG
*
76816884 TTCTATTTTATTATTTTATTTT
1 TT-TATTTTATTATTTTCTTTT
76816906 GAAAGACATA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
29 4 0.09
30 20 0.44
31 13 0.29
32 8 0.18
ACGTcount: A:0.17, C:0.06, G:0.01, T:0.76
Consensus pattern (30 bp):
TTTATTTTATTATTTTCTTTTTATTTTCAG
Found at i:76819816 original size:13 final size:13
Alignment explanation
Indices: 76819800--76819832 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76819790 TTTAATTAAA
*
76819800 TTAGTTAATTAGT
1 TTAGATAATTAGT
76819813 TTAGATAATTAGT
1 TTAGATAATTAGT
76819826 TTA-ATAA
1 TTAGATAA
76819833 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76820701 original size:29 final size:28
Alignment explanation
Indices: 76820668--76820905 Score: 196
Period size: 29 Copynumber: 8.3 Consensus size: 28
76820658 CCTATTTTCA
76820668 TAAAAGTGAGCCTTTGTGGCTATCTCTGT
1 TAAAAG-GAGCCTTTGTGGCTATCTCTGT
* *
76820697 TAAAAGAAGCCTTTGTGG-TGATCTCTTT
1 TAAAAGGAGCCTTTGTGGCT-ATCTCTGT
* * *
76820725 TATAAGGAAGTCTTTGT-GTTGATCTCTGT
1 TAAAAGG-AGCCTTTGTGGCT-ATCTCTGT
* * *
76820754 TATAAAGAAGCCTTTGTGGCGATCTTTGT
1 TA-AAAGGAGCCTTTGTGGCTATCTCTGT
* *
76820783 TATAAGGAAGCCTTTGTGGCGATCTCTGT
1 TAAAAGG-AGCCTTTGTGGCTATCTCTGT
* *
76820812 TATAAGGAAGCCTTTGTGGCTATCACTGT
1 TAAAAGG-AGCCTTTGTGGCTATCTCTGT
* * *
76820841 TAAAAGTATGCCTTTGTGGATATCTTTGT
1 TAAAAGGA-GCCTTTGTGGCTATCTCTGT
* * *
76820870 T-AAAGGTATGTC-TTGTGGCAAACTCTGT
1 TAAAAGG-A-GCCTTTGTGGCTATCTCTGT
76820898 TAAAAGGA
1 TAAAAGGA
76820906 TGACTTCATG
Statistics
Matches: 172, Mismatches: 28, Indels: 19
0.79 0.13 0.09
Matches are distributed among these distances:
27 1 0.01
28 46 0.27
29 121 0.70
30 4 0.02
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (28 bp):
TAAAAGGAGCCTTTGTGGCTATCTCTGT
Found at i:76820778 original size:58 final size:58
Alignment explanation
Indices: 76820676--76820859 Score: 237
Period size: 58 Copynumber: 3.2 Consensus size: 58
76820666 CATAAAAGTG
* *
76820676 AGCCTTTGTGGCTATCTCTGTTA-AAAGAAGCCTTTGTGGTGATCTCTT-TTATAAGGA
1 AGCCTTTGTGGCGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCT-TTGTTATAAGGA
* **
76820733 AGTCTTTGTGTTGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCTTTGTTATAAGGA
1 AGCCTTTGTGGCGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCTTTGTTATAAGGA
* * ** * *
76820791 AGCCTTTGTGGCGATCTCTGTTATAAGGAAGCCTTTGTGGCTATCACTGTTAAAAGTA
1 AGCCTTTGTGGCGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCTTTGTTATAAGGA
*
76820849 TGCCTTTGTGG
1 AGCCTTTGTGG
76820860 ATATCTTTGT
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
57 21 0.19
58 89 0.81
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (58 bp):
AGCCTTTGTGGCGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCTTTGTTATAAGGA
Found at i:76820821 original size:87 final size:86
Alignment explanation
Indices: 76820668--76820875 Score: 276
Period size: 87 Copynumber: 2.4 Consensus size: 86
76820658 CCTATTTTCA
* * * * *
76820668 TAAAAGTGAGCCTTTGTGGCTATCTCTGTTAAAAGAAGCCTTTGTGGTGATCTCTTTTATAAGGA
1 TAAAAGTAAGCCTTTGTGGCTATCTTTGTTAAAGGAAGCCTTTGTGGCGATCTCTGTTATAAGGA
* * *
76820733 AGTCTTTGT-GTTGATCTCTGT
66 AGCCTTTGTGGCT-ATCACTGT
*
76820754 TATAAAG-AAGCCTTTGTGGCGATCTTTGTTATAAGGAAGCCTTTGTGGCGATCTCTGTTATAAG
1 TA-AAAGTAAGCCTTTGTGGCTATCTTTGTTA-AAGGAAGCCTTTGTGGCGATCTCTGTTATAAG
76820818 GAAGCCTTTGTGGCTATCACTGT
64 GAAGCCTTTGTGGCTATCACTGT
* *
76820841 TAAAAGTATGCCTTTGTGGATATCTTTGTTAAAGG
1 TAAAAGTAAGCCTTTGTGGCTATCTTTGTTAAAGG
76820876 TATGTCTTGT
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
86 31 0.29
87 73 0.69
88 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (86 bp):
TAAAAGTAAGCCTTTGTGGCTATCTTTGTTAAAGGAAGCCTTTGTGGCGATCTCTGTTATAAGGA
AGCCTTTGTGGCTATCACTGT
Found at i:76820871 original size:58 final size:57
Alignment explanation
Indices: 76820668--76820905 Score: 223
Period size: 58 Copynumber: 4.1 Consensus size: 57
76820658 CCTATTTTCA
*
76820668 TAAAAGTG-AGCCTTTGTGGCTATCTCTGTTAAAAGAAGCCTTTGTGG-TGATCTCTTT
1 TAAAAG-GAAGCCTTTGTGGCTATCTCTGTTAAAAGAAGCCTTTGTGGCT-ATCTCTGT
* * * * *
76820725 TATAAGGAAGTCTTTGT-GTTGATCTCTGTTATAAAGAAGCCTTTGTGGCGATCTTTGT
1 TAAAAGGAAGCCTTTGTGGCT-ATCTCTGTTA-AAAGAAGCCTTTGTGGCTATCTCTGT
* * * *
76820783 TATAAGGAAGCCTTTGTGGCGATCTCTGTTATAAGGAAGCCTTTGTGGCTATCACTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGTTA-AAAGAAGCCTTTGTGGCTATCTCTGT
* * * * * * * * *
76820841 TAAAAGTATGCCTTTGTGGATATCTTTGTTAAAGGTATGTC-TTGTGGCAAACTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTGTTAAAAG-AAGCCTTTGTGGCTATCTCTGT
76820898 TAAAAGGA
1 TAAAAGGA
76820906 TGACTTCATG
Statistics
Matches: 150, Mismatches: 25, Indels: 12
0.80 0.13 0.06
Matches are distributed among these distances:
56 3 0.02
57 47 0.31
58 99 0.66
59 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (57 bp):
TAAAAGGAAGCCTTTGTGGCTATCTCTGTTAAAAGAAGCCTTTGTGGCTATCTCTGT
Found at i:76825583 original size:18 final size:17
Alignment explanation
Indices: 76825556--76825613 Score: 71
Period size: 18 Copynumber: 3.3 Consensus size: 17
76825546 TGAATGGTGA
76825556 ACACATAAACCAAGGAC
1 ACACATAAACCAAGGAC
*
76825573 ACACGATAAACCAAAGAC
1 ACAC-ATAAACCAAGGAC
* *
76825591 ACACAACAAACCAAGAAC
1 ACAC-ATAAACCAAGGAC
76825609 ACACA
1 ACACA
76825614 ATTCATCGCG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 5 0.14
18 30 0.86
ACGTcount: A:0.57, C:0.31, G:0.09, T:0.03
Consensus pattern (17 bp):
ACACATAAACCAAGGAC
Found at i:76833711 original size:34 final size:34
Alignment explanation
Indices: 76833668--76833738 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
76833658 AATTATCTAA
*
76833668 ACTAAGAATTCACAGAAAATAGAATTTGGGAATT
1 ACTAAGAATTCACAGAAAATAGAATTGGGGAATT
76833702 ACTAAGAATTCACAGAAAATAGAATTGGGGAATT
1 ACTAAGAATTCACAGAAAATAGAATTGGGGAATT
76833736 ACT
1 ACT
76833739 TTTGGAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.25
Consensus pattern (34 bp):
ACTAAGAATTCACAGAAAATAGAATTGGGGAATT
Found at i:76842104 original size:22 final size:22
Alignment explanation
Indices: 76842076--76842128 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
76842066 ACGAATGTGT
*
76842076 GCTGGAGGCCGTATGGAGGCGC
1 GCTGGAGGCCGTACGGAGGCGC
76842098 GCTGGAGGCCGTACGGAGGCGC
1 GCTGGAGGCCGTACGGAGGCGC
76842120 GCTGGAGGC
1 GCTGGAGGC
76842129 TAGGGCTGCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.13, C:0.25, G:0.51, T:0.11
Consensus pattern (22 bp):
GCTGGAGGCCGTACGGAGGCGC
Found at i:76845024 original size:18 final size:18
Alignment explanation
Indices: 76845001--76845063 Score: 90
Period size: 18 Copynumber: 3.5 Consensus size: 18
76844991 TGGCGAACAT
** *
76845001 ATAAACCAAGGATGCATG
1 ATAAACCAAGGACACACG
76845019 ATAAACCAAGGACACACG
1 ATAAACCAAGGACACACG
*
76845037 ATAAACCAATGACACACG
1 ATAAACCAAGGACACACG
76845055 ATAAACCAA
1 ATAAACCAA
76845064 AACCATGCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.51, C:0.24, G:0.14, T:0.11
Consensus pattern (18 bp):
ATAAACCAAGGACACACG
Found at i:76847734 original size:7 final size:7
Alignment explanation
Indices: 76847703--76847728 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
76847693 GTTTAAAGAC
76847703 TTTTTTA
1 TTTTTTA
76847710 TTTTTTA
1 TTTTTTA
76847717 TTTTTTA
1 TTTTTTA
76847724 TTTTT
1 TTTTT
76847729 AGTTTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:76854577 original size:16 final size:15
Alignment explanation
Indices: 76854556--76854585 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
76854546 GGATTAGATT
76854556 TTATTTGTTATTATTG
1 TTATTTGTT-TTATTG
76854572 TTATTTGTTTTATT
1 TTATTTGTTTTATT
76854586 TGAAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (15 bp):
TTATTTGTTTTATTG
Found at i:76869797 original size:46 final size:46
Alignment explanation
Indices: 76869744--76869872 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
76869734 TATTTGGGCA
76869744 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
76869790 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
76869836 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76869873 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:76875645 original size:10 final size:10
Alignment explanation
Indices: 76875630--76875657 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
76875620 ATATTACATG
76875630 TTTACTTTGT
1 TTTACTTTGT
76875640 TTTACTTTGT
1 TTTACTTTGT
76875650 TTTACTTT
1 TTTACTTT
76875658 TTCCCTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.07, T:0.71
Consensus pattern (10 bp):
TTTACTTTGT
Found at i:76876236 original size:24 final size:24
Alignment explanation
Indices: 76876209--76876256 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
76876199 GGAACATTTA
*
76876209 AACATTGTTGTAAATAAATTAAGT
1 AACATTGTTATAAATAAATTAAGT
*
76876233 AACATTGTTATGAATAAATTAAGT
1 AACATTGTTATAAATAAATTAAGT
76876257 TGAGGAGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.12, T:0.38
Consensus pattern (24 bp):
AACATTGTTATAAATAAATTAAGT
Found at i:76882366 original size:30 final size:30
Alignment explanation
Indices: 76882330--76882390 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76882320 TCCTTAACTC
76882330 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76882360 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76882390 A
1 A
76882391 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76886000 original size:40 final size:40
Alignment explanation
Indices: 76885945--76886089 Score: 215
Period size: 40 Copynumber: 3.7 Consensus size: 40
76885935 ATTTGAATGA
76885945 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
76885985 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
76886025 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
76886065 TATCCGGGCTAAG--ACGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
76886090 GTGCGAGTTG
Statistics
Matches: 99, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
38 11 0.11
40 85 0.86
41 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:76886121 original size:78 final size:79
Alignment explanation
Indices: 76885948--76886153 Score: 222
Period size: 78 Copynumber: 2.6 Consensus size: 79
76885938 TGAATGATAT
* * * * *
76885948 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAG-CACGAAGGCATTTA
* * * *
76886013 TGCTAGTGATTTTAT
65 TGCGAGTGACTATAC
*
76886028 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAG-ACGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGCACGAAGGCATTTA
76886091 TGCGAGTTG-CTATAC
65 TGCGAG-TGACTATAC
* * ** *
76886106 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
76886154 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
77 8 0.07
78 53 0.49
79 2 0.02
80 42 0.39
81 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGCACGAAGGCATTTAT
GCGAGTGACTATAC
Found at i:76894223 original size:79 final size:80
Alignment explanation
Indices: 76894054--76894260 Score: 242
Period size: 79 Copynumber: 2.6 Consensus size: 80
76894044 TGAATGATAT
* * * * *
76894054 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGTACCGAAGGCATTTA
* * *
76894119 TGCTAGTGATTTTAT
66 TGCTAGTGACTATAC
76894134 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAG-ACCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGTACCGAAGGCATTT
*
76894197 GTGCTAGTTG-CTATAC
65 ATGCTAG-TGACTATAC
* * ** *
76894213 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
76894261 ATTCTGAAGT
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 8 0.07
79 55 0.50
80 44 0.40
81 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGTACCGAAGGCATTTA
TGCTAGTGACTATAC
Found at i:76894240 original size:40 final size:40
Alignment explanation
Indices: 76894050--76894260 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
76894040 CATTTGAATG
* *
76894050 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
76894090 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
76894130 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
*
76894170 ATATCCGGGCTAAGA-CCGAAGGCATTTGTGCTAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
76894209 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
76894249 ATATCC-GGCTAA
1 ATATCCGGGCTAA
76894261 ATTCTGAAGT
Statistics
Matches: 154, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 42 0.27
40 109 0.71
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:76901550 original size:24 final size:24
Alignment explanation
Indices: 76901523--76901571 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
76901513 CGTCGAACGT
76901523 CGCTGATATCCGAACACCCAAGAG
1 CGCTGATATCCGAACACCCAAGAG
*
76901547 CGCTGATATTCGAACACCCAAGAG
1 CGCTGATATCCGAACACCCAAGAG
76901571 C
1 C
76901572 CCATGTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.14
Consensus pattern (24 bp):
CGCTGATATCCGAACACCCAAGAG
Found at i:76907834 original size:26 final size:24
Alignment explanation
Indices: 76907794--76907853 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
76907784 TTATTTCATT
* * *
76907794 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
76907818 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
76907844 AAATAAATAT
1 AAATAAATAT
76907854 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:76907865 original size:22 final size:22
Alignment explanation
Indices: 76907824--76907882 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
76907814 ATAATAAATC
* *
76907824 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
76907844 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
76907866 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
76907883 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:76907959 original size:15 final size:16
Alignment explanation
Indices: 76907929--76907961 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
76907919 AAATAGTTAT
76907929 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
76907946 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
76907961 A
1 A
76907962 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:76909261 original size:19 final size:17
Alignment explanation
Indices: 76909222--76909264 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
76909212 CATTTTGGAT
* *
76909222 TTTTTAAAATTTTAATT
1 TTTTTAGAATTTTAATC
76909239 TTTTTAGAATTTTATATAC
1 TTTTTAGAATTTTA-AT-C
76909258 TTTTTAG
1 TTTTTAG
76909265 TTAGTTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 13 0.59
18 2 0.09
19 7 0.32
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (17 bp):
TTTTTAGAATTTTAATC
Found at i:76917971 original size:30 final size:30
Alignment explanation
Indices: 76917935--76917994 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
76917925 TTTTTTATTA
76917935 TTAATTTTATTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* * *
76917965 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
76917995 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:76922953 original size:34 final size:33
Alignment explanation
Indices: 76922915--76922996 Score: 105
Period size: 34 Copynumber: 2.5 Consensus size: 33
76922905 GCTTTTTTCC
*
76922915 TTTTCCTTTTTCTTTTATTATTT-CCTTTTCTCGT
1 TTTTCC-TTTTCTTTTATTATTTCCCATTTC-CGT
*
76922949 TTTTCCCTTTTCTTTTATTCTTTCCCATTTCCGT
1 TTTT-CCTTTTCTTTTATTATTTCCCATTTCCGT
76922983 TTTT-CTTTTCTTTT
1 TTTTCCTTTTCTTTT
76922997 CTTCTTCTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
32 10 0.23
34 26 0.59
35 8 0.18
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (33 bp):
TTTTCCTTTTCTTTTATTATTTCCCATTTCCGT
Found at i:76922974 original size:19 final size:18
Alignment explanation
Indices: 76922915--76922979 Score: 55
Period size: 19 Copynumber: 3.7 Consensus size: 18
76922905 GCTTTTTTCC
*
76922915 TTTTCCTTTTTCTTTTAT
1 TTTTCCCTTTTCTTTTAT
**
76922933 TATTT-CCTTTTC--TCGT
1 T-TTTCCCTTTTCTTTTAT
76922949 TTTTCCCTTTTCTTTTAT
1 TTTTCCCTTTTCTTTTAT
*
76922967 TCTTTCCCATTTC
1 T-TTTCCCTTTTC
76922980 CGTTTTTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
15 3 0.08
16 10 0.28
18 10 0.28
19 13 0.36
ACGTcount: A:0.06, C:0.25, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTCCCTTTTCTTTTAT
Found at i:76926611 original size:29 final size:29
Alignment explanation
Indices: 76926568--76926625 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
76926558 CGAAAACTTG
*
76926568 AAGAGAGGTCGTTCATGGCAAGAATATGA
1 AAGAGAGGTCATTCATGGCAAGAATATGA
76926597 AAGAGAGGTCATTCATGGCAAGAATATGA
1 AAGAGAGGTCATTCATGGCAAGAATATGA
76926626 GACCTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (29 bp):
AAGAGAGGTCATTCATGGCAAGAATATGA
Found at i:76931169 original size:46 final size:46
Alignment explanation
Indices: 76931111--76931208 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
76931101 GTGAACTCTC
76931111 GTGTTTGCTTTCTGTTTAGCTCTCATGAGCTTCAGTCAACTCATAT
1 GTGTTTGCTTTCTGTTTAGCTCTCATGAGCTTCAGTCAACTCATAT
76931157 GTGTTTGCTTTCTGTTTAGCTCTCATGAGCTTCAGTCAACTCATAT
1 GTGTTTGCTTTCTGTTTAGCTCTCATGAGCTTCAGTCAACTCATAT
*
76931203 GAGTTT
1 GTGTTT
76931209 CAGTTTAACC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.44
Consensus pattern (46 bp):
GTGTTTGCTTTCTGTTTAGCTCTCATGAGCTTCAGTCAACTCATAT
Found at i:76931228 original size:21 final size:20
Alignment explanation
Indices: 76931202--76931260 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
76931192 TCAACTCATA
76931202 TGAGTTTCAGTTTAACCCTT
1 TGAGTTTCAGTTTAACCCTT
* * *
76931222 CTGAGTTTCAATTCAGCTCCTT
1 -TGAGTTTCAGTTTAAC-CCTT
*
76931244 TGAGCTTCAGTTTAACC
1 TGAGTTTCAGTTTAACC
76931261 TTTATGGTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.03
21 25 0.83
22 4 0.13
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (20 bp):
TGAGTTTCAGTTTAACCCTT
Found at i:76931329 original size:42 final size:42
Alignment explanation
Indices: 76931200--76931335 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
76931190 AGTCAACTCA
* * * * *
76931200 TATGAGTTTCAGTTTAACCCTTCTGAGTTTCAATTCAGCTCC
1 TATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTTCAGCACC
* * * *
76931242 TTTGAGCTTCAGTTTAACCTTTATGGTTTTCCGTTCAGCTA-C
1 TATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTTCAGC-ACC
** * *
76931284 TATGAGCTTCCTTTTAACCCTTATGGGTTTCTGTTTAGCACC
1 TATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTTCAGCACC
*
76931326 TATGTGCTTC
1 TATGAGCTTC
76931336 TGTGTAGCCT
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.01
42 74 0.99
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTTATGGGTTTCAGTTCAGCACC
Found at i:76936464 original size:108 final size:110
Alignment explanation
Indices: 76936312--76936512 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
76936302 ATCCTTTTGA
* * *
76936312 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCCTA-GAAACCTCACCAA
76936375 -TGCCATGCCTTGGCATGGTCTTACATGGGAACTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGAACTTTGCCTTATAGT
* * *
76936420 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCCTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCCTAGAAACCTCACCAAT
*
76936485 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
76936513 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 7 0.08
110 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCCTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGAACTTTGCCTTATAGT
Found at i:76936519 original size:55 final size:52
Alignment explanation
Indices: 76936266--76936519 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 52
76936256 TACACGGTAC
* * * * *
76936266 CTTACC-ATTCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTAGAAA
* *
76936314 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC-TA-GAAA
* * * * * *
76936367 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGAACTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC---TAGAAA
* * * *
76936422 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCCTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG-CCTAGAAA
* *
76936475 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
76936520 AAACCCTAAT
Statistics
Matches: 164, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
48 6 0.04
49 31 0.19
53 47 0.29
54 9 0.05
55 69 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTAGAAA
Found at i:76937624 original size:8 final size:8
Alignment explanation
Indices: 76937611--76937635 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
76937601 AATTTTCACA
76937611 CAATCATG
1 CAATCATG
76937619 CAATCATG
1 CAATCATG
76937627 CAATCATG
1 CAATCATG
76937635 C
1 C
76937636 CATAGACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (8 bp):
CAATCATG
Found at i:76939615 original size:53 final size:54
Alignment explanation
Indices: 76939525--76939740 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
76939515 TACGCGGTAT
* * *
76939525 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
76939579 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGG-GTCCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
* * * * * * * *
76939632 CCTTATAGTAACTTATCAATACGATGTCTTAACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* *
76939687 CCTTA-GAAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
76939741 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 24, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 3 0.02
53 46 0.35
54 14 0.11
55 66 0.50
56 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:76944235 original size:26 final size:25
Alignment explanation
Indices: 76944205--76944253 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
76944195 AGTTCAATCA
*
76944205 AATTTATAAATTAAATTAGTTTTTTT
1 AATTT-TAAATTAAATTAGATTTTTT
* *
76944231 AATTTTAAGTTCAATTAGATTTT
1 AATTTTAAATTAAATTAGATTTT
76944254 AAGTTTAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (25 bp):
AATTTTAAATTAAATTAGATTTTTT
Found at i:76949259 original size:37 final size:37
Alignment explanation
Indices: 76949150--76949259 Score: 175
Period size: 37 Copynumber: 3.0 Consensus size: 37
76949140 TGGAAATATA
* *
76949150 TTCCGGGTAAGACCCAATGACTACGTGTGGAGATTAT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
*
76949187 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
* *
76949224 TTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
76949260 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
Found at i:76950584 original size:40 final size:40
Alignment explanation
Indices: 76950529--76951093 Score: 853
Period size: 40 Copynumber: 14.1 Consensus size: 40
76950519 GAGAATTGAG
*
76950529 AGTGATATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76950569 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950609 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76950649 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950689 AGTGATATATCCGTGCTAAGTCCCGAAGAGCATTCAT-CTT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGC-T
* *
76950729 AGTGATGTATCCGGGCTAAGTCCCGAAGAACATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950769 AGTGATATATCCGGGCTAAGTCCTGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76950809 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950849 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
76950889 AGTGATATATCCGGGCTAAGTCTTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950929 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76950969 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
76951009 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * * *
76951049 GGTGTTATATCCGAGCTAGGTCCTGAAGAGAATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76951089 GGTGA
1 AGTGA
76951094 CATGTATTCG
Statistics
Matches: 477, Mismatches: 46, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
39 1 0.00
40 475 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:76953657 original size:37 final size:37
Alignment explanation
Indices: 76953551--76953657 Score: 160
Period size: 37 Copynumber: 2.9 Consensus size: 37
76953541 AAATATATTC
* * *
76953551 CGGGTAAGAACCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTA
*
76953588 CCGGTAAGACCCGATGACTACGTGTGGAGATTTTGTA
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTA
* *
76953625 CGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
76953658 CGTCTGAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTA
Found at i:76957267 original size:96 final size:96
Alignment explanation
Indices: 76957160--76957708 Score: 926
Period size: 96 Copynumber: 5.7 Consensus size: 96
76957150 ATTCAGCCAA
*
76957160 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAATTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
76957225 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
76957256 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATAT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATAT
*
76957321 GTGATAAGGCCTAATAGCCGATGTGATGAATGT
64 GTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957354 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
76957419 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957450 AAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
76957515 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957546 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
76957609 GATAAGGCCTAATGGCCGATGTGATGAATGT
66 GATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * * *
76957640 GAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
76957703 GATAAG
66 GATAAG
76957709 TCTCGAAGGG
Statistics
Matches: 435, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 147 0.34
96 194 0.45
98 94 0.22
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT
GATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:76957269 original size:49 final size:49
Alignment explanation
Indices: 76957160--76957708 Score: 883
Period size: 47 Copynumber: 11.5 Consensus size: 49
76957150 ATTCAGCCAA
*
76957160 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957209 GAAA-T-TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957256 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
76957305 GAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957354 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957403 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
76957450 AAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957499 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957546 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957593 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
76957640 GAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
76957687 GAAAGTGTATA-A-ATGTGATAAG
1 GAAAGTGTATATATATGTGATAAG
76957709 TCTCGAAGGG
Statistics
Matches: 476, Mismatches: 18, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
47 278 0.58
48 3 0.01
49 195 0.41
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:76960958 original size:20 final size:20
Alignment explanation
Indices: 76960933--76960974 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
76960923 CTCCGATGAC
76960933 TCGTTTACTACAGAAAGATG
1 TCGTTTACTACAGAAAGATG
*
76960953 TCGTTTGCTACAGAAAGATG
1 TCGTTTACTACAGAAAGATG
76960973 TC
1 TC
76960975 AGTAGAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (20 bp):
TCGTTTACTACAGAAAGATG
Found at i:76975701 original size:46 final size:46
Alignment explanation
Indices: 76975651--76975826 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
76975641 TGGTTGAGCA
76975651 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76975697 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76975742 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76975790 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76975827 GTGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76975807 original size:93 final size:93
Alignment explanation
Indices: 76975648--76975819 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76975638 GGATGGTTGA
* *
76975648 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76975713 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
76975741 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76975806 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
76975820 CTTATGGGTG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76983360 original size:45 final size:46
Alignment explanation
Indices: 76983197--76983371 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
76983187 TGGTTGAGCA
*
76983197 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
76983243 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
76983288 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
76983336 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76983372 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:76989582 original size:47 final size:47
Alignment explanation
Indices: 76989519--76990069 Score: 797
Period size: 47 Copynumber: 11.6 Consensus size: 47
76989509 CCCTTCGGGA
* * *
76989519 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
76989566 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76989613 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76989660 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76989707 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
76989754 CTTATCTCACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76989801 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
76989848 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
76989897 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76989944 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76989993 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
76990040 CTTATCACATATATACACTTTCACATTCAT
1 CTTATCACATATATACACTTTCACATTCAT
76990070 TCAAATATAC
Statistics
Matches: 477, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 386 0.81
49 89 0.19
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:76991579 original size:56 final size:56
Alignment explanation
Indices: 76991508--76991627 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
76991498 TATTAGTTTA
76991508 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
76991564 TTGGCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
76991620 TTGCCCAT
1 TTGCCCAT
76991628 CATCCCTTGT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:76992636 original size:42 final size:42
Alignment explanation
Indices: 76992577--76992668 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
76992567 TGGCCCTTAG
* * ** *
76992577 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
76992619 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
76992661 GCCCATTT
1 GCCCATTT
76992669 GAGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:76992844 original size:25 final size:23
Alignment explanation
Indices: 76992789--76992860 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
76992779 TCTTTATCAT
**
76992789 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
76992814 ATAACTGGGGCAAAGCCCTTTCTA
1 ATAACTGGGGCAAAGCCCTTT-TA
* *
76992838 ATAAACTGGGGCAGAGCACTTTT
1 AT-AACTGGGGCAAAGCCCTTTT
76992861 CGGTAAACTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
23 4 0.10
24 12 0.29
25 25 0.61
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:76993745 original size:27 final size:27
Alignment explanation
Indices: 76993684--76993747 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
76993674 GGCGTATTCA
*
76993684 TCATTTTACCGTACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGTATTACGG
*
76993711 TCACTTTACCCTACAAGGGCT-TTACGG
1 TCATTTTACCCTACAAGGG-TATTACGG
*
76993738 TCTTTTTACC
1 TCATTTTACC
76993748 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGTATTACGG
Found at i:76993831 original size:27 final size:27
Alignment explanation
Indices: 76993801--76993887 Score: 88
Period size: 27 Copynumber: 3.1 Consensus size: 27
76993791 GTAAATCTAC
76993801 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
76993828 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
76993854 AAAAAAGTCAAGGGTATTTCTGTAATTTTGT
1 ---AAA-CCAAGGGTATTTCAGTAATTTTGT
76993885 AAA
1 AAA
76993888 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 4 0.08
29 3 0.06
30 18 0.37
31 1 0.02
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:76993905 original size:27 final size:26
Alignment explanation
Indices: 76993865--76993961 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
76993855 AAAAAGTCAA
*
76993865 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTT-CAAATTAG
76993892 GGGTATTTTGGTAATTTTACAAATT-G
1 GGGTATTTTGGTAATTTT-CAAATTAG
* **
76993918 AGGGTATTTCGGTAATTTCTCAAACCAG
1 -GGGTATTTTGGTAATTT-TCAAATTAG
*
76993946 TGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
76993962 CTATCCTACA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.03
27 55 0.93
28 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTCAAATTAG
Found at i:76994012 original size:26 final size:25
Alignment explanation
Indices: 76993983--76994098 Score: 99
Period size: 27 Copynumber: 4.4 Consensus size: 25
76993973 GGGTATTTCA
*
76993983 GTAATTTCACAATCGAGGGTAAAATG
1 GTAATTTTA-AATCGAGGGTAAAATG
76994009 GTAATTTTGTAAA-CTGAGGGTAAAATG
1 GTAA-TTT-TAAATC-GAGGGTAAAATG
*
76994036 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAA-TTT-TAAATCGAGGGTAAAATG
* ***
76994063 ATAATTCTATAAATCGAGGGTACTTTG
1 GTAATT-T-TAAATCGAGGGTAAAATG
76994090 GTAATTTTA
1 GTAATTTTA
76994099 CAAGTTGAGG
Statistics
Matches: 76, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
25 2 0.03
26 8 0.11
27 64 0.84
28 2 0.03
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (25 bp):
GTAATTTTAAATCGAGGGTAAAATG
Found at i:76994027 original size:27 final size:27
Alignment explanation
Indices: 76993993--76994084 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
76993983 GTAATTTCAC
76993993 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
76994020 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * * *
76994047 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
76994074 AATCGAGGGTA
1 AATCGAGGGTA
76994085 CTTTGGTAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 57 0.97
28 1 0.02
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:77000852 original size:34 final size:34
Alignment explanation
Indices: 77000814--77000881 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
77000804 ACAATGAGAA
77000814 AGGTTTGTGAACTTGAATGTGTATTTAAATGTAC
1 AGGTTTGTGAACTTGAATGTGTATTTAAATGTAC
77000848 AGGTTTGTGAACTTGAATGTGTATTTAAATGTAC
1 AGGTTTGTGAACTTGAATGTGTATTTAAATGTAC
77000882 TTATTCATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (34 bp):
AGGTTTGTGAACTTGAATGTGTATTTAAATGTAC
Found at i:77005513 original size:29 final size:30
Alignment explanation
Indices: 77005480--77005540 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
77005470 TAAAGTGATT
*
77005480 TTGAGTAAAAATGTATA-TT-AGGGATTAAA
1 TTGAG-AAAAATGTAAATTTGAGGGATTAAA
* *
77005509 TTGAGAAAAGTGTAAATTTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATTTGAGGGATTAAA
77005539 TT
1 TT
77005541 ATGAAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 9 0.33
29 7 0.26
30 11 0.41
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (30 bp):
TTGAGAAAAATGTAAATTTGAGGGATTAAA
Found at i:77006715 original size:18 final size:21
Alignment explanation
Indices: 77006694--77006735 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
77006684 TAATGCCTTC
77006694 TATGTTGGC-TTT-TT-TTGG
1 TATGTTGGCATTTGTTGTTGG
77006712 TATGTTGGCATTTGTTGTTGG
1 TATGTTGGCATTTGTTGTTGG
77006733 TAT
1 TAT
77006736 AGTTTAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.43
19 3 0.14
20 2 0.10
21 7 0.33
ACGTcount: A:0.10, C:0.05, G:0.29, T:0.57
Consensus pattern (21 bp):
TATGTTGGCATTTGTTGTTGG
Found at i:77011020 original size:43 final size:43
Alignment explanation
Indices: 77010973--77011127 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 43
77010963 ATTGAGATGT
77010973 GATTACATGTAAGACCATGTCTGGGACATTGGTATTGCATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGTATTGCATTGA
** * * *
77011016 GATTACGCGTAAGACGATGTCTGGGATATT-GTCA-T-CATTAA
1 GATTACATGTAAGACCATGTCTGGGACATTGGT-ATTGCATTGA
* * * * * * *
77011057 TCGATTACGTGTAACACCTTGTCTGGGACAGTGGCATCGACA-TGT
1 --GATTACATGTAAGACCATGTCTGGGACATTGGTATTG-CATTGA
* *
77011102 GATAACATGTAAGACCATATCTGGGA
1 GATTACATGTAAGACCATGTCTGGGA
77011128 GATGGCATTG
Statistics
Matches: 85, Mismatches: 20, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
41 5 0.06
42 3 0.04
43 73 0.86
44 1 0.01
45 1 0.01
46 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGTATTGCATTGA
Found at i:77015327 original size:19 final size:20
Alignment explanation
Indices: 77015303--77015347 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
77015293 ATATTAATTT
77015303 AATTAA-AACAAAAGCATGA
1 AATTAAGAACAAAAGCATGA
77015322 AATTAAGAACAAAAGCATGA
1 AATTAAGAACAAAAGCATGA
77015342 AATTAA
1 AATTAA
77015348 TTTAATATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.18
Consensus pattern (20 bp):
AATTAAGAACAAAAGCATGA
Found at i:77016298 original size:42 final size:42
Alignment explanation
Indices: 77016192--77016353 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 42
77016182 CGATATGTGT
* * * *
77016192 TTTCGTGTAAGACCACATCTGGGACGCTGGCATCG-ACTTATGC
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGA
77016235 TTTACATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA
1 TTT-CATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA
* *
77016278 TTTCATGTAAGACC-CTGTCTGGGATAG-TGGGATCGATATTTGA
1 TTTCATGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGA
* * *
77016321 TTACATATAAGACCATGTCTGGGACGTTGGCAT
1 TTTCATGTAAGACCACGTCTGGGACGTTGGCAT
77016354 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.27
43 41 0.41
44 31 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TTTCATGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGA
Found at i:77019283 original size:16 final size:16
Alignment explanation
Indices: 77019264--77019294 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77019254 CTTCTTCACT
77019264 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
77019280 TACTTACTTACTTAA
1 TACTCACTTACTTAA
77019295 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:77019300 original size:20 final size:20
Alignment explanation
Indices: 77019261--77019300 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77019251 AAACTTCTTC
* *
77019261 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
77019281 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
77019301 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:77019391 original size:24 final size:23
Alignment explanation
Indices: 77019370--77019417 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
77019360 ACCTTTACTC
77019370 TTCTAGCATGAACTTGTCTTACCT
1 TTCTAGCAT-AACTTGTCTTACCT
* *
77019394 TTTTAGTATAACTTGTCTTACCT
1 TTCTAGCATAACTTGTCTTACCT
77019417 T
1 T
77019418 ACCTTACCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (23 bp):
TTCTAGCATAACTTGTCTTACCT
Found at i:77019615 original size:53 final size:53
Alignment explanation
Indices: 77019486--77019735 Score: 233
Period size: 55 Copynumber: 4.7 Consensus size: 53
77019476 ACACGGGTAC
* * * * *
77019486 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---T-CCTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
* *
77019535 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATGAAA
* * * *
77019588 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTAT-GAAA
* * * * *
77019643 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATGAAA
* * *
77019696 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTA
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA
77019736 TCGTTAAACC
Statistics
Matches: 165, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 35 0.21
52 2 0.01
53 48 0.29
54 15 0.09
55 64 0.39
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATGAAA
Found at i:77019677 original size:108 final size:110
Alignment explanation
Indices: 77019533--77019730 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
77019523 ATCCTTTTGA
* * *
77019533 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTA-GAAACCTCACCAA
77019596 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
77019641 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTAGAAACCTCACCAAT
*
77019706 TTCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
77019731 CGGTATCGTT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCATTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:77024045 original size:13 final size:13
Alignment explanation
Indices: 77024027--77024051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77024017 CTCTGTGTGA
77024027 TTTGAATTTTGAT
1 TTTGAATTTTGAT
77024040 TTTGAATTTTGA
1 TTTGAATTTTGA
77024052 GTTGATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (13 bp):
TTTGAATTTTGAT
Found at i:77026706 original size:44 final size:42
Alignment explanation
Indices: 77026641--77026802 Score: 146
Period size: 43 Copynumber: 3.8 Consensus size: 42
77026631 ATAGGATCCG
* **
77026641 ATATATGTTTTCGTGTAAGACCATGTTTGGGATGTTGGCATC
1 ATATATGATTTCGTGTAAGACCATGTTTGGGACATTGGCATC
* * *
77026683 GACT-TATGATTTACGTTTAAGACCACGTCTGGGACATTGGCATC
1 -A-TATATGATTT-CGTGTAAGACCATGTTTGGGACATTGGCATC
* * *
77026727 ATATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATC
1 ATATATGATTTCGTGTAAGACCATGTTTGGGACATTGGCATC
* * * * * *
77026769 GATATTTGATTACATATAAGACCACGTCTGGGAC
1 -ATATATGATTTCGTGTAAGACCATGTTTGGGAC
77026803 GTTGCCATTG
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
42 27 0.28
43 43 0.44
44 27 0.28
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (42 bp):
ATATATGATTTCGTGTAAGACCATGTTTGGGACATTGGCATC
Found at i:77026759 original size:42 final size:43
Alignment explanation
Indices: 77026639--77026779 Score: 153
Period size: 43 Copynumber: 3.3 Consensus size: 43
77026629 ACATAGGATC
* * * **
77026639 CGATATATGTTTTCGTGTAAGACCATGTTTGGGATGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACATTGGCAT
* * *
77026682 CGACT-TATGATTTACGTTTAAGACCAC-GTCTGGGACATTGGCAT
1 CGA-TATTTGATTT-CGTGTAAGACC-CTGTTTGGGACATTGGCAT
*
77026726 C-ATATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACATTGGCAT
77026768 CGATATTTGATT
1 CGATATTTGATT
77026780 ACATATAAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 12
0.79 0.10 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 28 0.34
44 26 0.32
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.37
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCCTGTTTGGGACATTGGCAT
Found at i:77031595 original size:68 final size:67
Alignment explanation
Indices: 77031523--77031672 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
77031513 CATCATGTGT
* * * *
77031523 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
77031585 ATGTAG
62 ATGTAG
** * *
77031591 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
77031656 AG
66 AG
77031658 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
77031673 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:77031628 original size:64 final size:64
Alignment explanation
Indices: 77031547--77031730 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
77031537 AGACATTATG
* *
77031547 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77031611 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77031676 AA
63 AA
* * * *
77031678 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
77031731 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77038981 original size:47 final size:47
Alignment explanation
Indices: 77038922--77039221 Score: 458
Period size: 47 Copynumber: 6.4 Consensus size: 47
77038912 GATGTACAAG
* *
77038922 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
77038969 GTGTATATATGTGATAAGGCCGAATGGCCATTGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
77039016 GTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
* *
77039063 GTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
77039110 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
77039157 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
77039204 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
77039222 TTTCGAAGGG
Statistics
Matches: 234, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
46 1 0.00
47 231 0.99
48 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:77052652 original size:37 final size:37
Alignment explanation
Indices: 77052602--77052677 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
77052592 CGAGAACACA
77052602 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
1 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
77052639 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
1 TCCGGATATTCACAAACTATCGACACTGATTCAATTT
77052676 TC
1 TC
77052678 AATTAGACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.33
Consensus pattern (37 bp):
TCCGGATATTCACAAACTATCGACACTGATTCAATTT
Found at i:77064699 original size:34 final size:34
Alignment explanation
Indices: 77064656--77064728 Score: 137
Period size: 34 Copynumber: 2.1 Consensus size: 34
77064646 AACTCATGGC
77064656 TTAAATAAGTACTAAGCACAGCCAGAGATAAAAT
1 TTAAATAAGTACTAAGCACAGCCAGAGATAAAAT
*
77064690 TTAAATAAGTACTAAGCACAGGCAGAGATAAAAT
1 TTAAATAAGTACTAAGCACAGCCAGAGATAAAAT
77064724 TTAAA
1 TTAAA
77064729 CTTCACTAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.22
Consensus pattern (34 bp):
TTAAATAAGTACTAAGCACAGCCAGAGATAAAAT
Found at i:77065494 original size:37 final size:37
Alignment explanation
Indices: 77065383--77065496 Score: 174
Period size: 37 Copynumber: 3.1 Consensus size: 37
77065373 CCTTTAGCTA
* * *
77065383 GGACGTAATCTCCACACGAAGTTATCGGGTCTTACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
* *
77065420 AGACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
*
77065457 GGACATAATCTCCACACGTAGTCATCGGGTCTCACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
77065494 GGA
1 GGA
77065497 ATATATTTCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
Found at i:77065711 original size:47 final size:47
Alignment explanation
Indices: 77065659--77066032 Score: 534
Period size: 47 Copynumber: 8.0 Consensus size: 47
77065649 TTTCACACTA
* * * * * *
77065659 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
77065706 GCCATTCGGCCTTATCACACATATGCATGCTCACATTAATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
77065753 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTTTCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77065800 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77065847 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77065894 GCGATTCGG-CTTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTG
* * *
77065941 GCCATTCGGCCTTATCACATATATGCATGTTCATATCCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
77065988 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
77066033 AAAATCCTAA
Statistics
Matches: 291, Mismatches: 34, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
46 3 0.01
47 285 0.98
48 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:77065858 original size:141 final size:141
Alignment explanation
Indices: 77065644--77066032 Score: 609
Period size: 141 Copynumber: 2.8 Consensus size: 141
77065634 CACATCGCCT
* * * * * * *
77065644 ACATATTTCACACTAGCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTGGCC
1 ACATTTTTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCC
*
77065709 ATTCGGCCTTATCACACATATGCATGCTCACATTAATCACATTGGCCATTCGGCCTT-ATCACAT
66 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGG-CTTCATCACAT
77065773 ATATGCATGCTC
130 ATATGCATGCTC
* *
77065785 ACATTTTTCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTGGCC
1 ACATTTTTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCC
*
77065850 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCGATTCGGCTTCATCACATA
66 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATA
*
77065915 TATGCATGTTC
131 TATGCATGCTC
** * *
77065926 ACATTCATCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATCCACCACATTGGCC
1 ACATTTTTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCC
*
77065991 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACAT
66 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
77066033 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
140 3 0.01
141 225 0.99
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (141 bp):
ACATTTTTCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCC
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATA
TATGCATGCTC
Found at i:77065938 original size:25 final size:25
Alignment explanation
Indices: 77065811--77065939 Score: 80
Period size: 25 Copynumber: 5.4 Consensus size: 25
77065801 CCATTCGGCC
77065811 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
* * * *
77065836 TCACCACAT-T-GGCCA--TTCGGCCT
1 TCATCACATATATG-CATGTTC-ACAT
* *
77065859 T-ATCACACATATGCATGCTCACAT
1 TCATCACATATATGCATGTTCACAT
* *
77065883 TCATCACAT-T-GGC--GATTCGGC-T
1 TCATCACATATATGCATG-TTC-ACAT
77065905 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
77065930 TCATCACATA
1 TCATCACATA
77065940 GGCCATTCGG
Statistics
Matches: 74, Mismatches: 16, Indels: 28
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.01
22 20 0.27
23 11 0.15
24 11 0.15
25 30 0.41
26 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.32
Consensus pattern (25 bp):
TCATCACATATATGCATGTTCACAT
Found at i:77069902 original size:25 final size:25
Alignment explanation
Indices: 77069865--77069916 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
77069855 AATGAATTTG
77069865 CACACACACAGTGC-CTCTAATCATT
1 CACACACACAGTGCTCT-TAATCATT
* *
77069890 CACACACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTTAATCATT
77069915 CA
1 CA
77069917 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.29
Consensus pattern (25 bp):
CACACACACAGTGCTCTTAATCATT
Found at i:77070246 original size:39 final size:40
Alignment explanation
Indices: 77070092--77070489 Score: 487
Period size: 39 Copynumber: 10.2 Consensus size: 40
77070082 CCAGCATGAT
* * * * * *
77070092 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
** *
77070132 TGCTCTTTCGGGGTTTAG-CACGGATATATCACTAGCACGAA
1 TGCTC-TTCGGGACTTAGTC-CGGATACATCACTAGCACGAA
*
77070173 TGCTCTTCGGAACTTAGTCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGT-CCGGATACATCACTAGCACGAA
* * *
77070214 TGCTCTTCGGGATTTAG-CCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
77070253 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAC--A
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * *
77070291 TGCTCTTCGGGATTTAG-CCGGATATATCACTA-TACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
77070329 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
77070369 TGCTCTTCGGGA-TTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
77070408 TGCTCTTC-GG-CTTAG-CCGGATACATCACTAGCAAGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
77070445 TGCTCTTCGGAACTTAGTCCGGATACATCACTAG--CGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
77070483 TGCTCTT
1 TGCTCTT
77070490 GAGATTTAGC
Statistics
Matches: 312, Mismatches: 33, Indels: 28
0.84 0.09 0.08
Matches are distributed among these distances:
36 2 0.01
37 42 0.13
38 49 0.16
39 87 0.28
40 64 0.21
41 67 0.21
42 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:77070359 original size:116 final size:116
Alignment explanation
Indices: 77070092--77070512 Score: 480
Period size: 116 Copynumber: 3.6 Consensus size: 116
77070082 CCAGCATGAT
* * * * * * * ** *
77070092 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAATGCTC-TTC-GGAATTAGCCCGGAT
*
77070157 ATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCCGGATACATCACTAGCACGAA
63 ATATCACTAGCAC-AATGCTCTTCGGGACTTAG--CCGGATACATCACTAGCACGAA
* * * *
77070214 TGCTCTTCGGGATTTAG-CCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAATGCTCTTCGGAA-TTAGCCCGGATA
* * * *
77070278 CATCACTAGCAC-ATGCTCTTCGGGATTTAGCCGGATATATCACTA-TACGAA
64 TATCACTAGCACAATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAA
*
77070329 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGATTAGCCCGGATAT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-GAATGCTCTTCGGAATTAGCCCGGATAT
*
77070394 ATCACTAGCACGAATGCTCTTC-GG-CTTAGCCGGATACATCACTAGCAAGAA
65 ATCACTAGCAC-AATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAA
* *
77070445 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGC-GAATGCTCTT-GAGATTTAGCCCGGACAT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAGAATGCTCTTCG-GAATTAGCCCGGATAT
77070508 -TCACT
65 ATCACT
77070513 CTCAATTCTC
Statistics
Matches: 264, Mismatches: 29, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
113 6 0.02
114 23 0.09
115 60 0.23
116 86 0.33
117 9 0.03
118 16 0.06
119 2 0.01
120 24 0.09
121 23 0.09
122 15 0.06
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (116 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAGAATGCTCTTCGGAATTAGCCCGGATATA
TCACTAGCACAATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAA
Found at i:77070372 original size:155 final size:153
Alignment explanation
Indices: 77070079--77070489 Score: 549
Period size: 155 Copynumber: 2.6 Consensus size: 153
77070069 CGAATACACG
* * * * * *
77070079 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTTCGGG
1 TCACTAGCATGAATGCTCTTC-GGACTTAG-CCGGATACATCACTAGCAC--ATGCTC-TTCGGG
*
77070144 GTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCCGGATACATCACTAGC
61 ATTTAGC-CGGATATATCACTA--ACGAATGCTCTTCGGAACTTAGTCCCGGATACATCACTAGC
77070209 ACGAATGCTCTTCGGGATTTAG-CCGGATATA
123 ACGAATGCTCTTCGGGA-TTAGCCCGGATATA
77070240 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACATGCTCTTCGGGATT
1 TCACTAGCATGAATGCTCTTCGG-ACTTAG-CCGGATACATCACTAGCACATGCTCTTCGGGATT
77070305 TAGCCGGATATATCACTATACGAATGCTCTTCGGAACTTAGT-CCGGATACATCACTAGCACGAA
64 TAGCCGGATATATCACTA-ACGAATGCTCTTCGGAACTTAGTCCCGGATACATCACTAGCACGAA
77070369 TGCTCTTCGGGATTAGCCCGGATATA
128 TGCTCTTCGGGATTAGCCCGGATATA
* * * *
77070395 TCACTAGCACGAATGCTCTTCGG-CTTAGCCGGATACATCACTAGCAAGAATGCTCTTCGGAACT
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCGGATACATCACTAGC-A-CATGCTCTTCGGGATT
* *
77070459 TAGTCCGGATACATCACTAGCGAATGCTCTT
64 TAG-CCGGATATATCACTAACGAATGCTCTT
77070490 GAGATTTAGC
Statistics
Matches: 230, Mismatches: 15, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
152 17 0.07
153 6 0.03
154 31 0.13
155 79 0.34
156 23 0.10
157 14 0.06
158 12 0.05
159 6 0.03
160 2 0.01
161 40 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (153 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCGGATACATCACTAGCACATGCTCTTCGGGATTTA
GCCGGATATATCACTAACGAATGCTCTTCGGAACTTAGTCCCGGATACATCACTAGCACGAATGC
TCTTCGGGATTAGCCCGGATATA
Found at i:77070500 original size:76 final size:77
Alignment explanation
Indices: 77070092--77070489 Score: 504
Period size: 76 Copynumber: 5.1 Consensus size: 77
77070082 CCAGCATGAT
* * * * * * *
77070092 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACA-AATGCTCTTTCGGGGTTTAGCACGGA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCA-AGAATGCTC-TTCGGGATTTAGC-CGGA
77070156 TATATCACTAGCACGAA
63 TATATCACTAG--CGAA
*
77070173 TGCTCTTCGGAACTTAGTCCCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCGGATA
1 TGCTCTTCGGAACTTAGT-CCGGATACATCACTAGCAAGAATGCTCTTCGGGATTTAGCCGGATA
77070238 TATCACTAGCATGAA
65 TATCACTAGC--GAA
*
77070253 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGC-A-CATGCTCTTCGGGATTTAGCCGGATAT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAAGAATGCTCTTCGGGATTTAGCCGGATAT
*
77070316 ATCACTATACGAA
66 ATCACTA-GCGAA
*
77070329 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGA-TTAGCCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAAGAATGCTCTTCGGGATTTAG-CCGGATA
77070393 TATCACTAGCACGAA
65 TATCACTAG--CGAA
* *
77070408 TGCTCTTCGG--CTTAG-CCGGATACATCACTAGCAAGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAAGAATGCTCTTCGGGATTTAG-CCGGATA
*
77070470 CATCACTAGCGAA
65 TATCACTAGCGAA
77070483 TGCTCTT
1 TGCTCTT
77070490 GAGATTTAGC
Statistics
Matches: 288, Mismatches: 18, Indels: 28
0.86 0.05 0.08
Matches are distributed among these distances:
75 11 0.04
76 70 0.24
77 61 0.21
78 30 0.10
79 31 0.11
80 36 0.12
81 27 0.09
82 22 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (77 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCAAGAATGCTCTTCGGGATTTAGCCGGATAT
ATCACTAGCGAA
Found at i:77071863 original size:37 final size:37
Alignment explanation
Indices: 77071771--77071883 Score: 174
Period size: 37 Copynumber: 3.1 Consensus size: 37
77071761 CTTTAGCTCA
* * *
77071771 GGACGTAATCTCCACACGAAGTTATCGGGTCTTACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
*
77071808 -GACAAAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
*
77071844 GGACATAATCTCCACACGTAGTCATCGGGTCTCACCC
1 GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
77071881 GGA
1 GGA
77071884 ATATATTTCT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
36 32 0.46
37 37 0.54
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (37 bp):
GGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
Found at i:77072099 original size:47 final size:47
Alignment explanation
Indices: 77072046--77072419 Score: 534
Period size: 47 Copynumber: 8.0 Consensus size: 47
77072036 TTTCACACTA
* * * * * *
77072046 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77072093 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77072140 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77072187 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * *
77072234 GCCATTCTGCCTTATCACACATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
77072281 GCCATTCGG-CTTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTG
* * *
77072328 GCCATTCGGCCTTATCACATATATGCATGTTCATATCCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
77072375 GCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
77072420 AAAATCCTAA
Statistics
Matches: 291, Mismatches: 34, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
46 3 0.01
47 285 0.98
48 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:77072246 original size:141 final size:141
Alignment explanation
Indices: 77072063--77072419 Score: 599
Period size: 141 Copynumber: 2.5 Consensus size: 141
77072053 GGCTTTACCG
* *
77072063 CATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACA
* *
77072128 TTCATCACATTGGCCATTCGGCCTT-ATCACATATATGCATGCTCACATTTATCACATTGGCCAT
66 TTCATCACATTGGCCATTCGG-CTTCATCACATATATGCATGCTCACATTCATCACATAGGCCAT
77072192 TCGGCCTCATCA
130 TCGGCCTCATCA
* *
77072204 CATATATGCATGTTCACATTCACCACATTGGCCATTCTGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACA
* *
77072269 TTTATCACATTGGCCATTCGGCTTCATCACATATATGCATGTTCACATTCATCACATAGGCCATT
66 TTCATCACATTGGCCATTCGGCTTCATCACATATATGCATGCTCACATTCATCACATAGGCCATT
*
77072334 CGGCCTTATCA
131 CGGCCTCATCA
* *
77072345 CATATATGCATGTTCATATCCACCACATTGGCCATTCAGCCTTATCACACATATGCATGTTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACA
77072410 TTCATCACAT
66 TTCATCACAT
77072420 AAAATCCTAA
Statistics
Matches: 202, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
140 3 0.01
141 199 0.99
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
CATATATGCATGTTCATATTCACCACATTGGCCATTCAGCCTTATCACACATATGCATGCTCACA
TTCATCACATTGGCCATTCGGCTTCATCACATATATGCATGCTCACATTCATCACATAGGCCATT
CGGCCTCATCA
Found at i:77084911 original size:44 final size:41
Alignment explanation
Indices: 77084779--77084899 Score: 170
Period size: 41 Copynumber: 2.9 Consensus size: 41
77084769 GCAAATTGGA
* * * *
77084779 ATAGATTCGGCTTTATATGGCACTAAGTGTGAGATACTGAT
1 ATAGCTTCAGCTTTATATGGCACTAAGTGTGCGATACTAAT
77084820 ATAGCTTCAGCTTTATATGGCACTAAGTGTGCGATACTAAT
1 ATAGCTTCAGCTTTATATGGCACTAAGTGTGCGATACTAAT
*
77084861 ATAGCTTCAGCTTGATATGATGGCACTAAATGTGCGATA
1 ATAGCTTCAGCTT--TAT-ATGGCACTAAGTGTGCGATA
77084900 TCTTTATAGC
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
41 50 0.69
43 3 0.04
44 19 0.26
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (41 bp):
ATAGCTTCAGCTTTATATGGCACTAAGTGTGCGATACTAAT
Found at i:77089108 original size:22 final size:23
Alignment explanation
Indices: 77089049--77089207 Score: 256
Period size: 22 Copynumber: 7.1 Consensus size: 23
77089039 CCTAGCCTCT
*
77089049 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77089072 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77089095 TTTAATAACT-GGGC-TAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
77089116 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77089139 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77089161 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77089183 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
77089205 TTT
1 TTT
77089208 TCCACTTCCT
Statistics
Matches: 129, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
21 16 0.12
22 67 0.52
23 46 0.36
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:77089282 original size:20 final size:20
Alignment explanation
Indices: 77089257--77089317 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
77089247 TTATGAATAC
*
77089257 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
77089277 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77089297 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77089317 A
1 A
77089318 AACCCTAGGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77096867 original size:31 final size:31
Alignment explanation
Indices: 77096826--77096889 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
77096816 CATTTTCATA
*
77096826 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
77096857 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
77096888 TT
1 TT
77096890 ACTATAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:77097135 original size:24 final size:24
Alignment explanation
Indices: 77097083--77097224 Score: 191
Period size: 24 Copynumber: 6.0 Consensus size: 24
77097073 GCTTTATCAT
* *
77097083 ATAACTGGGGGCCT-AGCCTCTCTTA
1 ATAACT-GGGGCATAAGCC-CTTTTA
* *
77097108 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
77097132 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77097155 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
77097179 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77097202 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77097225 CCACTTCCTC
Statistics
Matches: 105, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
23 43 0.41
24 52 0.50
25 10 0.10
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77097162 original size:47 final size:47
Alignment explanation
Indices: 77097082--77097224 Score: 216
Period size: 47 Copynumber: 3.0 Consensus size: 47
77097072 TGCTTTATCA
* *
77097082 TATAACTGGGGGCCT-AGCCTCTCTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACT-GGGGCATAAGCC-CT-TTAATAACTGGGGCATAAGCCCTTTT
77097131 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
* *
77097178 GATAACTGGGGCATAAGCCCTTTAATAACTAGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
77097225 CCACTTCCTC
Statistics
Matches: 89, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 70 0.79
48 8 0.09
49 11 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:77097299 original size:20 final size:20
Alignment explanation
Indices: 77097274--77097334 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
77097264 TTATGAATAC
77097274 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77097294 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
77097314 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
77097334 A
1 A
77097335 AACCCTAGGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:77097305 original size:11 final size:11
Alignment explanation
Indices: 77097274--77097329 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77097264 TTATGAATAC
77097274 ATCATGTGCAT
1 ATCATGTGCAT
*
77097285 ATCA--TACAT
1 ATCATGTGCAT
77097294 ATCATGTGCAT
1 ATCATGTGCAT
*
77097305 ATCA--TACAT
1 ATCATGTGCAT
*
77097314 GTCATGTGCAT
1 ATCATGTGCAT
77097325 ATCAT
1 ATCAT
77097330 ACATAAACCC
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:77097366 original size:25 final size:25
Alignment explanation
Indices: 77097338--77097385 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
77097328 ATACATAAAC
* * *
77097338 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77097363 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
77097386 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77103288 original size:46 final size:45
Alignment explanation
Indices: 77103238--77103410 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
77103228 TGGTTGAGCA
77103238 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
77103284 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
77103329 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGAGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
77103377 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
77103411 GGGGTGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:77103394 original size:93 final size:93
Alignment explanation
Indices: 77103235--77103405 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
77103225 GGATGGTTGA
* * *
77103235 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCATTGAGT
77103300 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
77103328 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCATTGAGT
77103393 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77103406 ACTTAGGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:77104782 original size:23 final size:23
Alignment explanation
Indices: 77104726--77104782 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 23
77104716 GGGGCGTTAC
77104726 ACATGCAATGCAACATAATATTAT
1 ACATGC-ATGCAACATAATATTAT
*
77104750 ACATGGATGCAACATACATA-TA-
1 ACATGCATGCAACATA-ATATTAT
77104772 ACATGACATGC
1 ACATG-CATGC
77104783 TCAAATACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 5 0.17
23 16 0.55
24 8 0.28
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (23 bp):
ACATGCATGCAACATAATATTAT
Found at i:77104902 original size:27 final size:27
Alignment explanation
Indices: 77104872--77104944 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
77104862 GGCATTTCGG
*
77104872 TCATTTTATCACATAAGGGAAAAATCA
1 TCATTTTATCACATGAGGGAAAAATCA
**
77104899 TCATTTTATCACATGAGGGAAAAATTG
1 TCATTTTATCACATGAGGGAAAAATCA
77104926 TCATTTTATCACATGAGGG
1 TCATTTTATCACATGAGGG
77104945 TTTAGGTACG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATGAGGGAAAAATCA
Found at i:77107045 original size:35 final size:35
Alignment explanation
Indices: 77107005--77107075 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
77106995 AAAATAGCAG
77107005 AGATACAATTAGATGATGTATAAAATATTAAATTT
1 AGATACAATTAGATGATGTATAAAATATTAAATTT
77107040 AGATACAATTAGATGATGTATAAAATATTAAATTT
1 AGATACAATTAGATGATGTATAAAATATTAAATTT
77107075 A
1 A
77107076 AGCTTAATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (35 bp):
AGATACAATTAGATGATGTATAAAATATTAAATTT
Found at i:77112017 original size:28 final size:28
Alignment explanation
Indices: 77111985--77112054 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
77111975 ATAGTAAGTC
77111985 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
77112013 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
77112041 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77112055 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:77116369 original size:34 final size:34
Alignment explanation
Indices: 77116331--77116447 Score: 132
Period size: 34 Copynumber: 3.5 Consensus size: 34
77116321 CGAATACATT
*
77116331 CTGGGCCTAAGCCCATATCAGTAACAGTAGCAGA
1 CTGGGCCTAAGCCCATATTAGTAACAGTAGCAGA
* * * *
77116365 CTGGGCCTTAGCCCATTTTAGTAACAGTTGTAG-
1 CTGGGCCTAAGCCCATATTAGTAACAGTAGCAGA
*
77116398 -TGAGGCCTAAGCCCATATTAGTAACAGTGGCA-A
1 CTG-GGCCTAAGCCCATATTAGTAACAGTAGCAGA
*
77116431 TCTGGGCCTTAGCCCAT
1 -CTGGGCCTAAGCCCAT
77116448 TACAGAATCA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
32 2 0.03
33 25 0.36
34 40 0.58
35 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (34 bp):
CTGGGCCTAAGCCCATATTAGTAACAGTAGCAGA
Found at i:77116724 original size:23 final size:22
Alignment explanation
Indices: 77116693--77116748 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 22
77116683 TATCCCACCC
77116693 CATGCGATGCAACATA-ATATTATA
1 CATG-GATGCAACATACATA-TA-A
77116717 CATGGATGCAACATACATATAA
1 CATGGATGCAACATACATATAA
77116739 CATGGCATGC
1 CATGG-ATGC
77116749 TCAAATACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.20
23 17 0.57
24 7 0.23
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (22 bp):
CATGGATGCAACATACATATAA
Found at i:77119756 original size:43 final size:43
Alignment explanation
Indices: 77119707--77119863 Score: 242
Period size: 43 Copynumber: 3.7 Consensus size: 43
77119697 AAATAGCTAT
77119707 GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
1 GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
77119750 GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
1 GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
* * * * *
77119793 GGCTGATTAATTGGCACTAAGTGTACGATACAATTATGGCTTC
1 GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
* **
77119836 AGCTAATTAATCGGCACTAAGTGTGCGA
1 GGCTAATTAATTAGCACTAAGTGTGCGA
77119864 GTTCATTGAA
Statistics
Matches: 105, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 105 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (43 bp):
GGCTAATTAATTAGCACTAAGTGTGCGATACAATTATAGCCTC
Done.