Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 228 of 362
Found at i:77122021 original size:16 final size:16
Alignment explanation
Indices: 77122000--77122036 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
77121990 GCCCAACATG
77122000 GCCCAAAACGGCCTAA
1 GCCCAAAACGGCCTAA
*
77122016 GCCCAAAATGGCCTAA
1 GCCCAAAACGGCCTAA
77122032 GCCCA
1 GCCCA
77122037 TGAAATTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.38, G:0.19, T:0.08
Consensus pattern (16 bp):
GCCCAAAACGGCCTAA
Found at i:77125647 original size:30 final size:30
Alignment explanation
Indices: 77125591--77125647 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
77125581 TTTCAAGACA
* **
77125591 AGGGGTAAAATGGTCATTTTGTCAAAGTCT
1 AGGGGCAAAATGGTCATTTTACCAAAGTCT
77125621 AGGGGCAAAATGGTCATTTTACCAAAG
1 AGGGGCAAAATGGTCATTTTACCAAAG
77125648 ATATGGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAATGGTCATTTTACCAAAGTCT
Found at i:77126105 original size:46 final size:45
Alignment explanation
Indices: 77126018--77126182 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 45
77126008 TTATGAGAGC
* * *
77126018 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGAC-CAGT
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAAGT
* * *
77126064 GCTAGTGTAAGATATGTTTGGGACATGCATCGGCCTCGAGACGTAAGT
1 -C-AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-AAGT
* * * *
77126112 CAGTGTAAGACATGTCTGGGACATGCATCGGC-TACAAGATG-TGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGAAGT
*
77126156 CAGTGTAAGACCATGTCTAGGACATGC
1 CAGTGTAAGA-CATGTCTGGGACATGC
77126183 CATTGGCACA
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
44 11 0.11
45 16 0.16
46 48 0.48
47 13 0.13
48 12 0.12
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAAGT
Found at i:77129717 original size:15 final size:15
Alignment explanation
Indices: 77129697--77129726 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77129687 GGATGTGTAG
77129697 TACAAGCTAAATGGC
1 TACAAGCTAAATGGC
77129712 TACAAGCTAAATGGC
1 TACAAGCTAAATGGC
77129727 CAGGTATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TACAAGCTAAATGGC
Found at i:77135512 original size:27 final size:27
Alignment explanation
Indices: 77135490--77135568 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
77135480 GGTAATTATT
77135490 CCCTACAGGGGTATTTCAATAATTCTA
1 CCCTACAGGGGTATTTCAATAATTCTA
*
77135517 CCCTACAGGGGTATTTCGATAATTCTA
1 CCCTACAGGGGTATTTCAATAATTCTA
* * *
77135544 CCTTACAGGGGTATTTTAGTAATTC
1 CCCTACAGGGGTATTTCAATAATTC
77135569 CATAACTTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
CCCTACAGGGGTATTTCAATAATTCTA
Found at i:77141180 original size:32 final size:31
Alignment explanation
Indices: 77141137--77141198 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
77141127 ACAAAGTCAC
* *
77141137 CAGATACATATATTGTAGCTAGGCCACCAGAA
1 CAGATACATATA-TGTAGCGAAGCCACCAGAA
* *
77141169 CAGATATATATATGTGGCGAAGCCACCAGA
1 CAGATACATATATGTAGCGAAGCCACCAGA
77141199 TTGCAGCGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (31 bp):
CAGATACATATATGTAGCGAAGCCACCAGAA
Found at i:77141963 original size:27 final size:27
Alignment explanation
Indices: 77141933--77142032 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
77141923 TTTACCGCAA
* *
77141933 AAGGGTATCTCGGTAATTCTACCCTAC
1 AAGGGTATTTCAGTAATTCTACCCTAC
* *
77141960 AAGGGTATTTCAATAATTCTACCCTAT
1 AAGGGTATTTCAGTAATTCTACCCTAC
* *
77141987 AGGGGTATTTCAGTAATTCTACCTTAC
1 AAGGGTATTTCAGTAATTCTACCCTAC
*
77142014 AAGGGTATTTTAGTAATTC
1 AAGGGTATTTCAGTAATTC
77142033 CACAACTTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTCAGTAATTCTACCCTAC
Found at i:77152845 original size:28 final size:29
Alignment explanation
Indices: 77152812--77152912 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
77152802 TATAGTAAGT
* * *
77152812 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77152840 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77152869 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77152898 CCACACACTTAGTGC
1 CCGCACACTTAGTGC
77152913 CAATTTCATG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:77160865 original size:28 final size:29
Alignment explanation
Indices: 77160831--77160931 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
77160821 TATAGTAAGT
* * *
77160831 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
**
77160859 TTGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77160888 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
77160917 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77160932 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:77164297 original size:30 final size:30
Alignment explanation
Indices: 77164240--77164297 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
77164230 TTTTCAGACC
* **
77164240 TAGGGGTAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
77164270 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
77164298 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:77166742 original size:53 final size:53
Alignment explanation
Indices: 77166673--77166775 Score: 170
Period size: 53 Copynumber: 1.9 Consensus size: 53
77166663 AAACTACGAC
* *
77166673 AAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCAT
1 AAGGCAAAGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAT
* *
77166726 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGCAAAGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
77166776 TAAAAAGGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.19
Consensus pattern (53 bp):
AAGGCAAAGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAT
Found at i:77175696 original size:39 final size:40
Alignment explanation
Indices: 77175619--77175764 Score: 127
Period size: 39 Copynumber: 3.7 Consensus size: 40
77175609 TAGCTCCTCG
* * *
77175619 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
77175659 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
77175698 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
77175738 CACAAGGCCTTCGGGACTTAACCCGGA
1 TTCAATGCCTTCGGGACTTAACCCGGA
77175765 ATTAATAACT
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 50 0.54
40 42 0.46
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:77175724 original size:79 final size:78
Alignment explanation
Indices: 77175625--77175844 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 78
77175615 CTCGTTCAAG
* ** * *
77175625 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA-ATT
*
77175690 AA-AACTCGCACGAA
64 AATAACTCGCACAAA
* * * * *
77175704 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTA
77175769 ATAACTCGCACAAA
65 ATAACTCGCACAAA
* * * * *
77175783 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
77175845 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 8 0.07
79 82 0.71
80 26 0.22
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
TAACTCGCACAAA
Found at i:77175765 original size:39 final size:38
Alignment explanation
Indices: 77175665--77175781 Score: 162
Period size: 39 Copynumber: 3.0 Consensus size: 38
77175655 CTCATTCAAT
* * *
77175665 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTATAACTCGCAC-AAG
*
77175705 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAG
1 GCCTTCGGGACTTAACCCGGAATTA-TAACTCGCACAAG
77175744 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAA
1 GCCTTCGGGACTTAACCCGGAATT-ATAACTCGCACAA
77175782 ATACCTTCGG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
39 40 0.57
40 30 0.43
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (38 bp):
GCCTTCGGGACTTAACCCGGAATTATAACTCGCACAAG
Found at i:77175804 original size:40 final size:39
Alignment explanation
Indices: 77175661--77175844 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
77175651 GTAACTCATT
*
77175661 CAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCA
1 CAATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCA
* *
77175700 CGAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 C-AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
*
77175740 CAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
1 CAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
* ** * * *
77175779 CAAATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 C-AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCA
* *
77175820 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAATGCCTTCGGGACTTAACCCGGA
77175845 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 45 0.37
40 68 0.56
41 8 0.07
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
Found at i:77183535 original size:39 final size:40
Alignment explanation
Indices: 77183458--77183603 Score: 127
Period size: 39 Copynumber: 3.7 Consensus size: 40
77183448 TAGCTCCTCG
* * *
77183458 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
77183498 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
77183537 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
77183577 CACAAGGCCTTCGGGACTTAACCCGGA
1 TTCAATGCCTTCGGGACTTAACCCGGA
77183604 ATTAATAACT
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
39 50 0.54
40 42 0.46
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:77183563 original size:79 final size:78
Alignment explanation
Indices: 77183464--77183683 Score: 228
Period size: 79 Copynumber: 2.8 Consensus size: 78
77183454 CTCGTTCAAG
* ** * *
77183464 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGA-ATT
*
77183529 AA-AACTCGCACGAA
64 AATAACTCGCACAAA
* * * * *
77183543 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAGGCCTTCGGGACTTAACCCGGAATTA
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTA
77183608 ATAACTCGCACAAA
65 ATAACTCGCACAAA
* * * * *
77183622 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
77183684 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
78 8 0.07
79 82 0.71
80 26 0.22
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
TAACTCGCACAAA
Found at i:77183604 original size:39 final size:38
Alignment explanation
Indices: 77183504--77183620 Score: 162
Period size: 39 Copynumber: 3.0 Consensus size: 38
77183494 CTCATTCAAT
* * *
77183504 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTATAACTCGCAC-AAG
*
77183544 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAG
1 GCCTTCGGGACTTAACCCGGAATTA-TAACTCGCACAAG
77183583 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAA
1 GCCTTCGGGACTTAACCCGGAATT-ATAACTCGCACAA
77183621 ATACCTTCGG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
39 40 0.57
40 30 0.43
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (38 bp):
GCCTTCGGGACTTAACCCGGAATTATAACTCGCACAAG
Found at i:77183643 original size:40 final size:39
Alignment explanation
Indices: 77183500--77183683 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
77183490 GTAACTCATT
*
77183500 CAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCA
1 CAATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCA
* *
77183539 CGAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 C-AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
*
77183579 CAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
1 CAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
* ** * * *
77183618 CAAATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 C-AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCA
* *
77183659 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAATGCCTTCGGGACTTAACCCGGA
77183684 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 45 0.37
40 68 0.56
41 8 0.07
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
CAATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCA
Found at i:77189527 original size:10 final size:9
Alignment explanation
Indices: 77189503--77189529 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
77189493 TTTTGGTGTT
77189503 TGTTTTTGA
1 TGTTTTTGA
77189512 TGTTTTTGA
1 TGTTTTTGA
77189521 TGTTTTTGA
1 TGTTTTTGA
77189530 GATCCTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.67
Consensus pattern (9 bp):
TGTTTTTGA
Found at i:77198267 original size:48 final size:46
Alignment explanation
Indices: 77198174--77198344 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
77198164 AATTTGTGCT
* * *
77198174 CTAGTGTAAGACATGTTTGGGACATGCATCGACCACAATATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAAGACGAGAG
* *
77198220 CTAGCGTAAGACAATGTCTGGGACATGGCATCGA-CATTAAGACGAGAG
1 CTAGTGTAAGAC-ATGTCTGGGACAT-GCATCGACCA-CAAGACGAGAG
* * * * *
77198268 CTAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGTA-ATGTA-AG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGACCAC-AAGACG-AGAG
* *
77198314 CCAGTGTAAGACATGTTTGGGACATGCATCG
1 CTAGTGTAAGACATGTCTGGGACATGCATCG
77198345 GCTACGAGAT
Statistics
Matches: 104, Mismatches: 15, Indels: 12
0.79 0.11 0.09
Matches are distributed among these distances:
46 49 0.47
47 30 0.29
48 25 0.24
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGACCACAAGACGAGAG
Found at i:77198284 original size:47 final size:46
Alignment explanation
Indices: 77198174--77198298 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
77198164 AATTTGTGCT
* * * *
77198174 CTAGTGTAAGACATGTTTGGGACATGCATCGACCACAATATGAGAG
1 CTAGTGTAAGAAATGTCTGGGACATGCATCGACCACAAGACGAGAG
* *
77198220 CTAGCGTAAGACAATGTCTGGGACATGGCATCGA-CATTAAGACGAGAG
1 CTAGTGTAAGA-AATGTCTGGGACAT-GCATCGACCA-CAAGACGAGAG
*
77198268 CTAGTGTAAGATATGTCTGGGACATGCATCG
1 CTAGTGTAAGAAATGTCTGGGACATGCATCG
77198299 GCCTCGTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 16 0.24
47 27 0.40
48 25 0.37
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
CTAGTGTAAGAAATGTCTGGGACATGCATCGACCACAAGACGAGAG
Found at i:77200210 original size:27 final size:27
Alignment explanation
Indices: 77200180--77200307 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
77200170 TTAGTTTACC
*
77200180 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* *
77200207 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTATA
*** * *
77200234 AAGCCACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATA
* * *
77200261 AAATTACCAAAATACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTATA
**
77200288 AAATTACTGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
77200308 TAGGGTAGAA
Statistics
Matches: 80, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTATA
Found at i:77200301 original size:54 final size:54
Alignment explanation
Indices: 77200174--77200307 Score: 178
Period size: 54 Copynumber: 2.5 Consensus size: 54
77200164 AATACTTTAG
* * *
77200174 TTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
* *** *
77200228 TTTATAAAGCCACCAAAATATCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
**
77200282 TTTACAAAATTACTGAAATACCCCTG
1 TTTACAAAATTACCAAAATACCCCTG
77200308 TAGGGTAGAA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
Found at i:77200328 original size:54 final size:54
Alignment explanation
Indices: 77200287--77200402 Score: 162
Period size: 54 Copynumber: 2.1 Consensus size: 54
77200277 CTTGATTTAC
* *
77200287 AAAATTACTGAAATACCCCTGTAGGGTAGAAATACTGAAATATCCC-TGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATA-CCCTTGTAGGGT
* * * *
77200341 AGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
77200395 AAAATTAC
1 AAAATTAC
77200403 CATTTTACCC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 3 0.06
54 51 0.94
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (54 bp):
AAAATTACTAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
Found at i:77200403 original size:27 final size:27
Alignment explanation
Indices: 77200287--77200402 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
77200277 CTTGATTTAC
77200287 AAAATTACTGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
*
77200314 AGAAA-TACTGAAATATCCCTGTAGGGT
1 A-AAATTACTGAAATACCCCTGTAGGGT
* *
77200341 AGAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
* * * * *
77200368 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGT
77200395 AAAATTAC
1 AAAATTAC
77200403 CATTTTACCC
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.03
27 72 0.94
28 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTGTAGGGT
Found at i:77200866 original size:6 final size:6
Alignment explanation
Indices: 77200818--77200904 Score: 63
Period size: 6 Copynumber: 14.3 Consensus size: 6
77200808 TTGCATTCAC
* * *
77200818 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
77200867 -TCACCG ATTCTG ATTCTG ATTCTA ATTCT- AGTTCTG AT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
77200905 AATGTTTCTT
Statistics
Matches: 63, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
5 4 0.06
6 53 0.84
7 5 0.08
8 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:77202902 original size:27 final size:27
Alignment explanation
Indices: 77202871--77203006 Score: 157
Period size: 27 Copynumber: 5.0 Consensus size: 27
77202861 TAGAATACTT
**
77202871 TAGTTTACCAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
77202898 TAGTTTGTAAAATTACTAAAATACCCT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77202925 TGGTTTATAAAATCACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77202952 TGGTTTGTAAAATTACCAAAATA-CCC
1 TAGTTTATAAAATTACCAAAATACCCC
* *
77202978 TTGATTTACAAAATTACCAAAATACCCC
1 TAG-TTTATAAAATTACCAAAATACCCC
77203006 T
1 T
77203007 GTAGGGTAGA
Statistics
Matches: 92, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
26 5 0.05
27 83 0.90
28 4 0.04
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:77203007 original size:54 final size:54
Alignment explanation
Indices: 77202874--77203007 Score: 214
Period size: 54 Copynumber: 2.5 Consensus size: 54
77202864 AATACTTTAG
* * * *
77202874 TTTACCAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
* *
77202928 TTTATAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
77202982 TTTACAAAATTACCAAAATACCCCTG
1 TTTACAAAATTACCAAAATACCCCTG
77203008 TAGGGTAGAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGA
Found at i:77203027 original size:27 final size:27
Alignment explanation
Indices: 77202997--77203099 Score: 127
Period size: 27 Copynumber: 3.9 Consensus size: 27
77202987 AAAATTACCA
77202997 AAATACCCCTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAAATACTG
* *
77203024 AAATACACCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAAATACTG
* * *
77203051 AAATATCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACTG
* * *
77203078 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAAAT
77203100 TACCATTTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 3 0.05
27 63 0.95
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACTG
Found at i:77203047 original size:54 final size:54
Alignment explanation
Indices: 77202987--77203104 Score: 148
Period size: 54 Copynumber: 2.2 Consensus size: 54
77202977 CTTGATTTAC
*
77202987 AAAATTACCAAAATACCCCTGTAGGGTAGAAATACTGAAATACACC-TGTAGGGT
1 AAAATTACCAAAATACCCCTGTAGGGTAGAAATACCGAAATAC-CCTTGTAGGGT
* ** * * * *
77203041 AGAATTACTGAAATATCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
77203095 AAAATTACCA
1 AAAATTACCA
77203105 TTTTACCCTT
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
Found at i:77203100 original size:27 final size:26
Alignment explanation
Indices: 77202987--77203103 Score: 119
Period size: 27 Copynumber: 4.3 Consensus size: 26
77202977 CTTGATTTAC
*
77202987 AAAATTACCAAAATACCCCTGTAGGGT
1 AAAATTACCGAAATA-CCCTGTAGGGT
*
77203014 AGAAA-TACTGAAATACACCTGTAGGGT
1 A-AAATTACCGAAATAC-CCTGTAGGGT
* *
77203041 AGAATTACTGAAATATCCCTGTAGGGT
1 AAAATTACCGAAATA-CCCTGTAGGGT
* * *
77203068 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCC-TGTAGGGT
77203095 AAAATTACC
1 AAAATTACC
77203104 ATTTTACCCT
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.08
27 68 0.87
28 4 0.05
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.25
Consensus pattern (26 bp):
AAAATTACCGAAATACCCTGTAGGGT
Found at i:77203394 original size:26 final size:26
Alignment explanation
Indices: 77203347--77203396 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
77203337 CTCGCTGCAA
* *
77203347 TCTGGTGGCTTCGCCCATATATCTGT
1 TCTGGTGACTTCGCACATATATCTGT
77203373 TCTGGTGACTTCGTCACA-ATATCT
1 TCTGGTGACTTCG-CACATATATCT
77203397 TGCAGCCTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (26 bp):
TCTGGTGACTTCGCACATATATCTGT
Found at i:77203456 original size:67 final size:66
Alignment explanation
Indices: 77203328--77203480 Score: 243
Period size: 67 Copynumber: 2.3 Consensus size: 66
77203318 GAGGAAGCGT
*
77203328 TCTGGTAGCCTCGCTGCAATCTGGTGGCTTCGCCCATATATCTGTTCTGGTGACTTCGTCACAAT
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCCATATATCTGTTCTGGTGACTTCGTCACAAT
77203393 A
66 A
* * * * *
77203394 TCTTGCAGCCTCGCTGCAATGTGGTGGTTTCGCCACATATATCTGTTTTGGTGACTTTGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCC-CATATATCTGTTCTGGTGACTTCGTCACAA
77203459 TA
65 TA
77203461 TCTGGCAGCCTCGCTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
77203481 TTCTGTGGTG
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
66 30 0.38
67 49 0.62
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (66 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCCATATATCTGTTCTGGTGACTTCGTCACAAT
A
Found at i:77203625 original size:6 final size:6
Alignment explanation
Indices: 77203583--77203651 Score: 70
Period size: 6 Copynumber: 11.3 Consensus size: 6
77203573 TTGCATTCAC
* * *
77203583 ATTCTG ATTTTG ATTCTG -TTACATG ATACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
77203632 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
77203652 AATATTTCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
5 3 0.06
6 44 0.85
7 4 0.08
8 1 0.02
ACGTcount: A:0.22, C:0.14, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77217157 original size:7 final size:7
Alignment explanation
Indices: 77217141--77217171 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
77217131 GAGGGATGAT
77217141 TGAGGGA
1 TGAGGGA
*
77217148 TGAAGGA
1 TGAGGGA
77217155 TGAGGGA
1 TGAGGGA
77217162 TGAGGGA
1 TGAGGGA
77217169 TGA
1 TGA
77217172 TTAGAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.52, T:0.16
Consensus pattern (7 bp):
TGAGGGA
Found at i:77219408 original size:29 final size:29
Alignment explanation
Indices: 77219375--77219434 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
77219365 AATGAATAAA
77219375 AAGACAAGAATCTCCCCTTTTATTTTTCT
1 AAGACAAGAATCTCCCCTTTTATTTTTCT
77219404 AAGACAAGAATCTCCCCTTTTATTTTTCT
1 AAGACAAGAATCTCCCCTTTTATTTTTCT
77219433 AA
1 AA
77219435 CTCCTTCTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (29 bp):
AAGACAAGAATCTCCCCTTTTATTTTTCT
Found at i:77224569 original size:43 final size:43
Alignment explanation
Indices: 77224489--77224615 Score: 116
Period size: 43 Copynumber: 3.0 Consensus size: 43
77224479 AGACATCGTG
* * * * *
77224489 TAAGACCGTGTCTGGGACACAGGCCTTGAT-TGAGATTTACATA
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTACATA
** * *
77224532 TAAGACCATGTCTGGGACATCGGCATC-ATATCTGATTT-CGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTACATA
* *
77224574 TAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACAT
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACAT
77224616 GTTAGACAAC
Statistics
Matches: 67, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACATA
Found at i:77231623 original size:40 final size:40
Alignment explanation
Indices: 77231529--77231753 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
77231519 TATTCGAATG
* *
77231529 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
77231570 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
77231610 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
77231650 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
77231690 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
77231730 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
77231754 CTTGCGCAAG
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:77240000 original size:28 final size:29
Alignment explanation
Indices: 77239968--77240066 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
77239958 TATAATAAGC
*
77239968 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
77239996 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
77240024 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
77240053 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77240067 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:77248005 original size:28 final size:29
Alignment explanation
Indices: 77247973--77248071 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
77247963 ATAATAAGCC
*
77247973 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
77248001 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
77248029 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
77248058 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77248072 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:77250918 original size:40 final size:40
Alignment explanation
Indices: 77250794--77251018 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
77250784 TATTCGAATG
* *
77250794 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
77250835 ATAACCGGACTAAGATCCGAAGGAATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
77250875 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
77250915 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
77250955 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
77250995 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
77251019 CTTGCGCAAG
Statistics
Matches: 153, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:77250977 original size:80 final size:79
Alignment explanation
Indices: 77250794--77251054 Score: 249
Period size: 80 Copynumber: 3.3 Consensus size: 79
77250784 TATTCGAATG
* * * * *
77250794 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAA-AACCGAAGGC
*
77250859 ATTCGTGCGAGTTGCT
64 ATTCGTGCGAGTCGCT
* * * *
77250875 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAAACC-GAAGGCA
* *
77250940 TTTGTGCTAG-CGACT
65 TTCGTGCGAGTCG-CT
* * * * * *
77250955 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAA-AACCGAAGGCA
* * * *
77251020 TT-GCGCAAGTAGTT
65 TTCGTGCGAGTCGCT
*
77251034 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
77251055 ATTACTTGAG
Statistics
Matches: 148, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
78 13 0.09
79 16 0.11
80 85 0.57
81 34 0.23
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAAACCGAAGGCAT
TCGTGCGAGTCGCT
Found at i:77251013 original size:120 final size:121
Alignment explanation
Indices: 77250794--77251018 Score: 285
Period size: 120 Copynumber: 1.9 Consensus size: 121
77250784 TATTCGAATG
** * *
77250794 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGA
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGA
* * *
77250859 ATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
77250915 ATATCCGGGCTAAAACCTGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCTGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCC-GAAGG
* * * *
77250978 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 AATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGC
77251019 CTTGCGCAAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 5 0.06
120 53 0.60
121 30 0.34
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGA
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:77261612 original size:48 final size:48
Alignment explanation
Indices: 77261285--77261604 Score: 453
Period size: 48 Copynumber: 6.7 Consensus size: 48
77261275 TGAGATCCCA
* *
77261285 TGTAAGACCATGTCTGAGACATGGCATCGACATTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* * *
77261333 TGTAAGACCATGTCTGGGACATGGCATCAGCATTGATATGTGTTCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* * *
77261381 TGTAAGACCATGTCTGGAACATGGCATCAGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
** * *
77261429 TGTAAGACCATGTCTAAGACATGGCATCGGCGTTAATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* *
77261477 TGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
* *
77261525 TGTATGACCATGTCTGGGACATGGCATCGGCGA-TGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGATATGTGTGCCAG
* * *
77261573 TGTAAGACCATGTTTGGTACATAGCATCGGCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA
77261605 CCGATATGAG
Statistics
Matches: 246, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
47 1 0.00
48 244 0.99
49 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAG
Found at i:77264240 original size:28 final size:28
Alignment explanation
Indices: 77264172--77264269 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
77264162 CATGAGATTT
* * * *
77264172 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77264201 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77264229 GCACTAAGTGTGCAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77264256 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77264270 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77264283 original size:29 final size:27
Alignment explanation
Indices: 77264200--77264283 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77264190 TAAATTGTAC
** *
77264200 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTAATTATAT
* *
77264228 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTAATTATAT
* *
77264255 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-AACTTAAT-TATAT
77264284 TTTTGAATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 24 0.50
28 19 0.40
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTAATTATAT
Found at i:77268860 original size:24 final size:24
Alignment explanation
Indices: 77268832--77268892 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
77268822 ACCGAATTCA
* * *
77268832 CACACATAGTGCTA-ATTAAGCTCG
1 CACACATAGTGCCATACTAAAC-CG
77268856 CACACATAGTGCCATACTAAACCG
1 CACACATAGTGCCATACTAAACCG
77268880 CACACATAGTGCC
1 CACACATAGTGCC
77268893 TGAAATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.31, G:0.15, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATACTAAACCG
Found at i:77272451 original size:40 final size:40
Alignment explanation
Indices: 77272372--77272539 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
77272362 CGGATGATAA
* * * * *
77272372 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGTTATAT
* * * * *
77272412 CCAGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTG-TTATAT
*
77272452 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGTTATAT
*
77272492 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGTTATAT
77272532 CC-GGCTAA
1 CCGGGCTAA
77272540 ATCCCGAGGA
Statistics
Matches: 109, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 8 0.07
40 99 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGTTATAT
Found at i:77272510 original size:80 final size:80
Alignment explanation
Indices: 77272372--77272539 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
77272362 CGGATGATAA
* * * * *
77272372 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCAGGCTATGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTCGTGCCAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTA
*
77272437 TGCTAG-TGATTATAT
66 TGCGAGTTG-TTATAT
* * *
77272452 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCCAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTA
77272517 TGCGAGTTGTTATAT
66 TGCGAGTTGTTATAT
77272532 CC-GGCTAA
1 CCGGGCTAA
77272540 ATCCCGAGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCCAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGTTATAT
Found at i:77274307 original size:24 final size:24
Alignment explanation
Indices: 77274280--77274329 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
77274270 GATGCATCGA
*
77274280 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* *
77274304 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
77274328 CA
1 CA
77274330 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:77283059 original size:18 final size:18
Alignment explanation
Indices: 77283028--77283062 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
77283018 GATATATAAT
77283028 CATTTTACATATTTACAA
1 CATTTTACATATTTACAA
77283046 CATTTATACA-ATTTACA
1 CATTT-TACATATTTACA
77283063 TAAACACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (18 bp):
CATTTTACATATTTACAA
Found at i:77285346 original size:40 final size:40
Alignment explanation
Indices: 77285291--77285368 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
77285281 AAAATGGTTG
*
77285291 AAAGTACGTGGTTTAGGATGAAAAGGGAATAATTAGCCAT
1 AAAGTACGTGGTTTAGGACGAAAAGGGAATAATTAGCCAT
77285331 AAAGTACGTGGTTTAGGACGAAAAGGGAATAATTAGCC
1 AAAGTACGTGGTTTAGGACGAAAAGGGAATAATTAGCC
77285369 GTTTTTGCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (40 bp):
AAAGTACGTGGTTTAGGACGAAAAGGGAATAATTAGCCAT
Found at i:77285817 original size:50 final size:50
Alignment explanation
Indices: 77285742--77286080 Score: 370
Period size: 50 Copynumber: 6.9 Consensus size: 50
77285732 TGATGCTAGG
*
77285742 GAGATATGAAAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* * * *
77285792 GAGATATGAGAGATAGTGTAAGACCATGTCTAGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* *
77285842 GAGATATAAGAGCTAGTGTAAGACTATGTTTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* *
77285892 GAGATATGAGAGCTAGTGGAAGACCATGTTTGGGACATGGCATC-GACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* * * * * *
77285940 -TGATATGTG-TC-AGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-CTC
* * * * * *
77285987 GATAGATGAGAGGTAGTTTAAGACCATGTTTAGGACATGGCATCAGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
* * * *
77286037 GATAAACGAGAG-TCAGTGTCAA-ACCATGTCTGGGACATGGCATC
1 GAGATATGAGAGCT-AGTGT-AAGACCATGTTTGGGACATGGCATC
77286081 ACTTTGATGT
Statistics
Matches: 245, Mismatches: 35, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
45 27 0.11
46 2 0.01
47 8 0.03
48 5 0.02
49 5 0.02
50 196 0.80
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTC
Found at i:77286023 original size:145 final size:145
Alignment explanation
Indices: 77285742--77286125 Score: 402
Period size: 145 Copynumber: 2.6 Consensus size: 145
77285732 TGATGCTAGG
* * * *
77285742 GAGATATGAAAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAGATATGAGAGAT-
1 GAGATATGAGAGCTAGTGCAAGACCATGTTTGGGACATGGCATC-GACT--TGATAT--GAG-TC
* *
77285806 AGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAGATATAAGAGCTAGTGTAAGACTATGT
60 AGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAGAGATAAGAGCTAGTGTAAGACCATGT
* *
77285871 TTGGGACATGGCATCGGCCTC
125 TTAGGACATGGCATCAGCCTC
* *
77285892 GAGATATGAGAGCTAGTGGAAGACCATGTTTGGGACATGGCATCGACTTGATATGTGTCAGTGTA
1 GAGATATGAGAGCTAGTGCAAGACCATGTTTGGGACATGGCATCGACTTGATATGAGTCAGTGTA
* * * *
77285957 AGACCATGTCTAGGACATGGCATC-AGCAC-CGATAGATGAGAGGTAGTTTAAGACCATGTTTAG
66 AGACCATGTCTAGGACATGGCATCGA-C-CTCGAGAGATAAGAGCTAGTGTAAGACCATGTTTAG
77286020 GACATGGCATCAGCCTC
129 GACATGGCATCAGCCTC
* * * * * * *
77286037 GATAAACGAGAG-TCAGTGTCAA-ACCATGTCTGGGACATGGCATC-ACTTTGATGTGCGGCCAG
1 GAGATATGAGAGCT-AGTG-CAAGACCATGTTTGGGACATGGCATCGAC-TTGATATG-AGTCAG
* **
77286099 TGTAAGACCATTTCCGGGACATGGCAT
62 TGTAAGACCATGTCTAGGACATGGCAT
77286126 TGGCACCATA
Statistics
Matches: 203, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
144 5 0.02
145 117 0.58
146 31 0.15
147 5 0.02
149 3 0.01
150 42 0.21
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (145 bp):
GAGATATGAGAGCTAGTGCAAGACCATGTTTGGGACATGGCATCGACTTGATATGAGTCAGTGTA
AGACCATGTCTAGGACATGGCATCGACCTCGAGAGATAAGAGCTAGTGTAAGACCATGTTTAGGA
CATGGCATCAGCCTC
Found at i:77291540 original size:40 final size:40
Alignment explanation
Indices: 77291496--77291758 Score: 404
Period size: 40 Copynumber: 6.6 Consensus size: 40
77291486 TACTTGCTCG
* * *
77291496 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCACACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
77291536 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
77291576 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
77291616 AATGCCTTCGGGTCTTAGCCCGGATATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
77291656 AATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
77291696 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACA
77291736 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
77291759 TTATCATCCA
Statistics
Matches: 208, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.00
40 207 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
Found at i:77291608 original size:80 final size:80
Alignment explanation
Indices: 77291461--77291758 Score: 422
Period size: 80 Copynumber: 3.7 Consensus size: 80
77291451 AAGCCAAGTA
* * * * * * *
77291461 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATGCCTTCGGGACATAGCCCAGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
77291524 GTAACTCACACCAATG
65 GTAACTCGCACAAATG
77291540 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
77291605 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
77291620 CCTTCGGGTCTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCTGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
77291685 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
77291700 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
77291759 TTATCATCCA
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
79 14 0.07
80 184 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:77291688 original size:120 final size:119
Alignment explanation
Indices: 77291461--77291758 Score: 438
Period size: 120 Copynumber: 2.5 Consensus size: 119
77291451 AAGCCAAGTA
* * * * * * *
77291461 CCTTCGGGATTTA-ACCGGATATAGCTACTTGCTCGAATGCCTTCGGGACATAGCCCAGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
77291525 TAACTCACACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
65 TAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
77291580 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
77291645 TAACTCACACAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
65 TAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77291700 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
77291759 TTATCATCCA
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
119 14 0.09
120 148 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77300152 original size:40 final size:40
Alignment explanation
Indices: 77300004--77300215 Score: 234
Period size: 40 Copynumber: 5.3 Consensus size: 40
77299994 CATTTGAATG
* * *
77300004 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
77300044 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
77300084 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
77300124 ATATCCGGGCTATGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * ** *
77300164 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
77300204 ATATCC-GGCTAA
1 ATATCCGGGCTAA
77300216 ATTCTGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 9 0.06
40 140 0.91
41 5 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:77302913 original size:31 final size:29
Alignment explanation
Indices: 77302872--77302964 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 29
77302862 ATAAAGGAAT
*
77302872 AAAGGAGAAAAGAGAAAGAAAATGGGAGA
1 AAAGGAGAAAAGAGAAAGAAAATAGGAGA
*
77302901 GAAAGGAAGAAAAGAAAATAGAAAGATAGGAGA
1 -AAAGG-AGAAAAGAGAA-AGAAA-ATAGGAGA
77302934 AAAGG-GAAAGAGAAGAAAGAAAA-ATGGAGA
1 AAAGGAGAAA-AG-AGAAAGAAAATA-GGAGA
77302964 A
1 A
77302965 GAAAAGGGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
29 1 0.02
30 16 0.30
31 17 0.31
32 13 0.24
33 7 0.13
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.04
Consensus pattern (29 bp):
AAAGGAGAAAAGAGAAAGAAAATAGGAGA
Found at i:77302931 original size:24 final size:25
Alignment explanation
Indices: 77302881--77302937 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
77302871 TAAAGGAGAA
* *
77302881 AAGAGAAAGAAAATGGGAGAGAAAGG
1 AAGA-AAAGAAAATGAGAAAGAAAGG
*
77302907 AAGAAAAGAAAAT-AGAAAGATAGG
1 AAGAAAAGAAAATGAGAAAGAAAGG
77302931 -AGAAAAG
1 AAGAAAAG
77302938 GGAAAGAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.25
24 8 0.29
25 9 0.32
26 4 0.14
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.05
Consensus pattern (25 bp):
AAGAAAAGAAAATGAGAAAGAAAGG
Found at i:77303640 original size:15 final size:15
Alignment explanation
Indices: 77303620--77303656 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
77303610 GGACACGCCC
77303620 GTGTCTCGTAACCGT
1 GTGTCTCGTAACCGT
77303635 GTGTCTCGTAACCGT
1 GTGTCTCGTAACCGT
77303650 GTGTCTC
1 GTGTCTC
77303657 ACACGGTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.27, T:0.35
Consensus pattern (15 bp):
GTGTCTCGTAACCGT
Found at i:77310896 original size:878 final size:878
Alignment explanation
Indices: 77309188--77310946 Score: 2894
Period size: 878 Copynumber: 2.0 Consensus size: 878
77309178 ACAACGGCAT
**
77309188 CAAAAACTTGATGGTTGTGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
1 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
** * *
77309253 TAGTATTGTTATGGTGAGGCCGAAATATTGTATCCACGAGGACTAAAAGTACTAGTAGTTACTCT
66 TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGCACTAGTAGTTACTCT
77309318 CTTTTCATTATCTAGCCTAAGAATTTAAGGGTGTTTTCAAACTAAACTAATTTTTGAATTTATCG
131 CTTTTCATTATCTAGCCTAAGAATTTAAGGGTGTTTTCAAACTAAACTAATTTTTGAATTTATCG
* * *
77309383 ATGATTACGACAGAGGCGAAAGTTGGAAAATCCTTTTAGGAAAACCAATTGAGAAGACAATACCC
196 AAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACCC
* *
77309448 AAGAAAGAATCCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCACTTGACTTAT
261 AAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCACTTGACTTAC
77309513 TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGAATCTAGGTTC
326 TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGAATCTAGGTTC
* * *
77309578 ATTAATTGAAATCCCTTTCTAATTAAAACCCCTATTGTTATATTAACTCAATCTATAGATTCCCT
391 ATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCCCT
* *
77309643 TATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGGATTGCATTCAACTTCA
456 TATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCCA
* * *
77309708 TTTAATTATAAATGATCTACTCTTAAATAGGGACTATTGCTCCACTGAATAAGCACATCACAAAC
521 CTTAATTATAAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAAAC
*
77309773 ATGGATTAATATCCTGAAATTTTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
586 ATGGATTAATATCCTGAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
* ** * *
77309838 TTTATCATATACGTCAAAGCATAATAAGATTCATCATAGGGTTCATCTCCCTTAGGTATTTAGGG
651 TTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAGGG
*
77309903 AGTTTAGTTCATAATAATAATGGAAAACATCACAAAGTATATAAAACAACAAAACATAAAGAAAC
716 AGTTTAGTTCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAAAC
*
77309968 CCAAGAACTTCTAGGAAATTGGATGGAAATATTCAATCTTGATGTAGATCCTGGCTCCGAGGTGA
781 CCAAGAACTTCTAGGAAATTGGATGGAAATATTCAATCTTGATATAGATCCTGGCTCCGAGGTGA
* *
77310033 TTCCGATGGCTAGTCGCGAGTATTTTTTGCCTC
846 TTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
*
77310066 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGTGCACCTATCGAA-AA
1 CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
* *
77310130 GTAGTATTGTTATGGTGAGAATGGAATATCGTATCCACGAGGACTAAAAGCACTAGTAGTTACTC
66 -TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGCACTAGTAGTTACTC
* * *
77310195 TCTTTTTATTATCTGGCCTAAGAATTTAAGGGTGTTTTTAAACTAAACTAATTATTT-AATTTAT
130 TCTTTTCATTATCTAGCCTAAGAATTTAAGGGTGTTTTCAAACTAAACTAATT-TTTGAATTTAT
* * *
77310259 CTAAGATCACGACAGAGGCGATAGTTGGAAAATACTTTTAGGTAAACCAATTGAGAAGACAATAC
194 CGAAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATAC
* *
77310324 CCAAGAAAGAAACCACCTAGACTTCACTTATTGCCTTTGACTTAGATGATTTATTCACTTGACTT
259 CCAAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCACTTGACTT
* *
77310389 ACTCCGTAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGACTCTAGGT
324 ACTCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGAATCTAGGT
* *
77310454 TGATTAATTGAAATCTCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCC
389 TCATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCC
77310519 CTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTC
454 CTTATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTC
* * * * * *
77310584 CGCTTCATTATGAATGATCTACTCTTAAACAGGGACTTTTGTTCCTCTGAATAAGCACATCAAAA
519 CACTTAATTATAAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAA
* * *
77310649 ACCTGGATTAATATCCTGAAATATTAAAGCAAGAATTAAAACTCATAGTTAAGAATAAGAACAAG
584 ACATGGATTAATATCCTGAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAAC
*
77310714 TATTAATCATATAAATCAAAGCATAATAAGACTCGTCATAGGGTTCATCTCCCATAGGTATTTAG
649 TATTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAG
* * * *
77310779 GGAGTTTAGTTCATCATAATAGTGGAAAACATCTCAAAGTTTAGAAAACAACAAAACATAAAGAA
714 GGAGTTTAGTTCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAA
* * **
77310844 ACCCAAGAACTTCTAGGAAATTGGATGGAAATCTTCAGT-TATGATATAGATCCTGGCTTTGAGG
779 ACCCAAGAACTTCTAGGAAATTGGATGGAAATATTCAATCT-TGATATAGATCCTGGCTCCGAGG
* *
77310908 TGATTCCAATGGCTAGTCGTGTGTATTTTCTGCCTC
843 TGATTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
77310944 CAA
1 CAA
77310947 CTCTGTGTGT
Statistics
Matches: 814, Mismatches: 64, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
877 3 0.00
878 808 0.99
879 3 0.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (878 bp):
CAAAAACTTGATGGTCATGAAACTAACTAATAATTCAACTTAAGGCAAGCGCACCTATCGAACAA
TAGTATTGTTATGGTGAGAACGAAATATCGTATCCACGAGGACTAAAAGCACTAGTAGTTACTCT
CTTTTCATTATCTAGCCTAAGAATTTAAGGGTGTTTTCAAACTAAACTAATTTTTGAATTTATCG
AAGATCACGACAGAGGCGAAAGTTGGAAAATACTTTTAGGAAAACCAATTGAGAAGACAATACCC
AAGAAAGAAACCACCTAGACTTCACTTATTACCTTTGACTTAGACGATTTATTCACTTGACTTAC
TCCATAGAAATCCCTAATTTATGTTAATATCTCTCTCGAGACTAAGAACAACTGAATCTAGGTTC
ATTAATTGAAATCCCTTTCTAAGTAAAACCCCTATTGTCACATTAACTCAATCTATAGATTCCCT
TATTAGATTTGACTCTAATCCGGCAGATTTATGTCATCCTATCTCTAGAATTGCATTCAACTCCA
CTTAATTATAAATGATCTACTCTTAAACAGGGACTATTGCTCCACTGAATAAGCACATCAAAAAC
ATGGATTAATATCCTGAAATATTAAAGCAAGAATTAAAACTCATAATTAAGAATAAGAACAACTA
TTAATCATATAAATCAAAGCATAATAAGACTCATCATAGGGTTCATCTCCCATAGGTATTTAGGG
AGTTTAGTTCATAATAATAATGGAAAACATCACAAAGTATAGAAAACAACAAAACATAAAGAAAC
CCAAGAACTTCTAGGAAATTGGATGGAAATATTCAATCTTGATATAGATCCTGGCTCCGAGGTGA
TTCCAATGGCTAGTCGCGAGTATTTTCTGCCTC
Found at i:77311188 original size:30 final size:30
Alignment explanation
Indices: 77311136--77311193 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
77311126 CATGGCCATG
*
77311136 ACACACTGGCGTGTGGTCTACCCGTGTGTC
1 ACACACTGGCGTGTGGTCTACCCATGTGTC
77311166 ACACAC-GGACGTGTGGAT-TACCCATGTG
1 ACACACTGG-CGTGTGG-TCTACCCATGTG
77311194 GAACTACCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 2 0.08
30 22 0.88
31 1 0.04
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (30 bp):
ACACACTGGCGTGTGGTCTACCCATGTGTC
Found at i:77315333 original size:26 final size:26
Alignment explanation
Indices: 77315303--77315359 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
77315293 AGCTAGCGCT
77315303 GATGCCTTGGAATGGCTGGGGTCATA
1 GATGCCTTGGAATGGCTGGGGTCATA
*
77315329 GATGCCTTGGAATGGCTGGGGTTATA
1 GATGCCTTGGAATGGCTGGGGTCATA
77315355 GATGC
1 GATGC
77315360 TTGTAGTAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.19, C:0.14, G:0.39, T:0.28
Consensus pattern (26 bp):
GATGCCTTGGAATGGCTGGGGTCATA
Found at i:77316002 original size:19 final size:17
Alignment explanation
Indices: 77315986--77316019 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
77315976 AAGTAGAGGG
77315986 GAGG-GAAAAAAGAAGA
1 GAGGAGAAAAAAGAAGA
77316002 GAGGAGAAAAGAAGAAGA
1 GAGGAGAAAA-AAGAAGA
77316020 AAATGGGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 5 0.31
18 7 0.44
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (17 bp):
GAGGAGAAAAAAGAAGA
Found at i:77317702 original size:45 final size:45
Alignment explanation
Indices: 77317619--77317786 Score: 146
Period size: 45 Copynumber: 3.8 Consensus size: 45
77317609 ATTGACTTTA
* * * *
77317619 GAAACAAGAAAAACCATGGTTGAAAGATACCATTGCATTATACTT
1 GAAACAAGAAAGACCATAGTTGAAAGATACTATGGCATTATACTT
* * * **
77317664 GAAACAAGAAAGACCATAGTTGAAAAACACTATGGCATTAAACCA
1 GAAACAAGAAAGACCATAGTTGAAAGATACTATGGCATTATACTT
* * * *
77317709 G-AA-TAGATAAGACCATAGTTGAAATATATTATGGCACTATA-TT
1 GAAACAAGA-AAGACCATAGTTGAAAGATACTATGGCATTATACTT
* *
77317752 GGAAATGAA-CAAGACCATAGTTGAAAGATACTATG
1 -GAAA-CAAGAAAGACCATAGTTGAAAGATACTATG
77317787 ATATTAAATC
Statistics
Matches: 97, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.32
45 62 0.64
47 1 0.01
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (45 bp):
GAAACAAGAAAGACCATAGTTGAAAGATACTATGGCATTATACTT
Found at i:77317802 original size:45 final size:44
Alignment explanation
Indices: 77317673--77317834 Score: 168
Period size: 45 Copynumber: 3.6 Consensus size: 44
77317663 TGAAACAAGA
*
77317673 AAGACCATAGTTGAAAAACACTATGGCATTAAA-CC-AGAAT-AGAT
1 AAGACCATAGTTG-AAAATACTATGGCATTAAATCCGA-AATGA-AT
* * * ** *
77317717 AAGACCATAGTTGAAATATATTATGGCACTATATTGGAAATGAAC
1 AAGACCATAGTTGAAA-ATACTATGGCATTAAATCCGAAATGAAT
**
77317762 AAGACCATAGTTGAAAGATACTATGATATTAAATCCGAAATGAAT
1 AAGACCATAGTTGAAA-ATACTATGGCATTAAATCCGAAATGAAT
77317807 AAGACCATAGTTGACAAATACTATGGCA
1 AAGACCATAGTTGA-AAATACTATGGCA
77317835 AAACATCGGG
Statistics
Matches: 95, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
43 3 0.03
44 25 0.26
45 63 0.66
46 4 0.04
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.25
Consensus pattern (44 bp):
AAGACCATAGTTGAAAATACTATGGCATTAAATCCGAAATGAAT
Found at i:77319402 original size:46 final size:46
Alignment explanation
Indices: 77319335--77319549 Score: 288
Period size: 46 Copynumber: 4.7 Consensus size: 46
77319325 CATAGTGTCC
* * * *
77319335 TTCAACTATGGTCTTACTCATTTTC-TATCATGTTGCCTTGGTATCT
1 TTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCT
*** * * *
77319381 TTCAACCATGGTCTTGTTCATTTCATATCACGTTGTCATGGCATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
77319427 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
* * *
77319473 TTCAGCCATGGTCTTACACATTTCATATCAGGCTGCTATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
*
77319519 TTCAACCATGGTCCTACACATTTCATATCAG
1 TTCAACCATGGTCTTACACATTTCATATCAG
77319550 AGAGCACACT
Statistics
Matches: 150, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 4 0.03
46 146 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
Found at i:77323251 original size:40 final size:40
Alignment explanation
Indices: 77323012--77323234 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
77323002 TGGATGATAA
** * *
77323012 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
77323052 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
77323092 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
77323132 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTAGTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
77323172 CCGGGATAAGTCCCAAAGGCATTGGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
77323212 TCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
77323235 CGAGCAAGTA
Statistics
Matches: 162, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 1 0.01
40 161 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77323251 original size:80 final size:81
Alignment explanation
Indices: 77323051--77323255 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 81
77323041 AGTGACTAGT
* * *
77323051 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CCATATCCAGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGCTATATCCAGGATAAGTCCCAAAGGCATT
*
77323115 TGTGCGAGTTACTATA
66 GGTGCGAGTTACTATA
* *
77323131 TCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTAG-TATATCCGGGATAAGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGCTATATCCAGGATAAGTCCCAAAGGCATT
*
77323195 GGTGTGAGTTACTATA
66 GGTGCGAGTTACTATA
* * * * *
77323211 TTCGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATATCCAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGCTATATCCAG
77323256 TTAAATCCCG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 3 0.03
80 106 0.97
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAGCTATATCCAGGATAAGTCCCAAAGGCATT
GGTGCGAGTTACTATA
Found at i:77324999 original size:3 final size:3
Alignment explanation
Indices: 77324985--77325033 Score: 50
Period size: 3 Copynumber: 16.3 Consensus size: 3
77324975 TTTTATATTA
77324985 AAT AATT AAT AAT AA- AAT AAT AAT GGAAT AAT AAT AA- AAT AAT AA-
1 AAT AA-T AAT AAT AAT AAT AAT AAT --AAT AAT AAT AAT AAT AAT AAT
77325030 AAT A
1 AAT A
77325034 TCTCATTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
2 6 0.15
3 28 0.70
4 3 0.08
5 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:77325007 original size:11 final size:11
Alignment explanation
Indices: 77324991--77325029 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
77324981 ATTAAATAAT
77324991 TAATAATAAAA
1 TAATAATAAAA
**
77325002 TAATAATGGAA
1 TAATAATAAAA
77325013 TAATAATAAAA
1 TAATAATAAAA
77325024 TAATAA
1 TAATAA
77325030 AATATCTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:77325056 original size:20 final size:21
Alignment explanation
Indices: 77325019--77325078 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
77325009 GGAATAATAA
*
77325019 TAAAATAATAAAATATCTCAT
1 TAAAATAATAAAATATCTAAT
*
77325040 TAAAATAAT-ATATATCTAAT
1 TAAAATAATAAAATATCTAAT
*
77325060 TAAATAATCATAAAATATC
1 T-AA-AATAATAAAATATC
77325079 ATCAACATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.31
21 11 0.34
22 5 0.16
23 6 0.19
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATAATAAAATATCTAAT
Found at i:77329506 original size:25 final size:25
Alignment explanation
Indices: 77329468--77329540 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
77329458 AAATGAATCG
* *
77329468 CCACAAAGGATTTAAAGGTGACTCA
1 CCACAAAGGCTTTACAGGTGACTCA
* * *
77329493 CCACAAAGGCTTTACATGTGATTCG
1 CCACAAAGGCTTTACAGGTGACTCA
* *
77329518 CCAAAAAAGCTTTACAGGTGACT
1 CCACAAAGGCTTTACAGGTGACT
77329541 TGCTACAAAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (25 bp):
CCACAAAGGCTTTACAGGTGACTCA
Found at i:77336587 original size:5 final size:5
Alignment explanation
Indices: 77336537--77336568 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
77336527 GGATTTAGTT
77336537 TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC T
77336569 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:77337626 original size:5 final size:5
Alignment explanation
Indices: 77337576--77337607 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
77337566 GGATTTAGTT
77337576 TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC T
77337608 CTTCATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:77338798 original size:15 final size:15
Alignment explanation
Indices: 77338778--77338809 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
77338768 TAAGATTGTG
77338778 AAATTGAGATAAATA
1 AAATTGAGATAAATA
77338793 AAATTGAGATAAATA
1 AAATTGAGATAAATA
77338808 AA
1 AA
77338810 TTACTACGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (15 bp):
AAATTGAGATAAATA
Found at i:77348891 original size:48 final size:48
Alignment explanation
Indices: 77348820--77349000 Score: 283
Period size: 48 Copynumber: 3.8 Consensus size: 48
77348810 TCTCATATCG
* *
77348820 ATGCCATGTCCCAAACATTGTCTTACATGAGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* *
77348868 ATGCCATGTCCCAGACATGGTCTTACATGTGATCACATATCGATGCCT
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
* *
77348916 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
*
77348964 ACGCCATGTCCCAGACATGGTCTTACAT-AGGATCACA
1 ATGCCATGTCCCAGACATGGTCTTACATGA-GATCACA
77349001 ATGCCATAGC
Statistics
Matches: 123, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 123 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGATCACATATCGATGCCA
Found at i:77349021 original size:37 final size:37
Alignment explanation
Indices: 77348980--77349062 Score: 132
Period size: 37 Copynumber: 2.2 Consensus size: 37
77348970 TGTCCCAGAC
*
77348980 ATGGTCTTACATAG-GATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACAT-GTCATCACAATGCCATAGCCCAGCT
*
77349017 ATGGTCTTACATGTCATTACAATGCCATAGCCCAGCT
1 ATGGTCTTACATGTCATCACAATGCCATAGCCCAGCT
77349054 ATGGTCTTA
1 ATGGTCTTA
77349063 GACGTACTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 1 0.02
37 42 0.98
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (37 bp):
ATGGTCTTACATGTCATCACAATGCCATAGCCCAGCT
Found at i:77353562 original size:43 final size:42
Alignment explanation
Indices: 77353438--77353592 Score: 204
Period size: 43 Copynumber: 3.7 Consensus size: 42
77353428 ACTAAAATTA
* *
77353438 CGTGTAAGATCATATCTGGGATATGGCATC-ATATGAGATTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
*
77353479 CGTGAAAGACCATATCTAGGATATGGCATCGATATGAGATTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
* * * *
77353521 TGTGTAAGACCATAGCTAGGTTATTGGCATCGATATGAGATTA
1 CGTGTAAGACCATATCTAGGATA-TGGCATCGATATGAGATTT
* * *
77353564 CATGTAAGACCATATCTGGGATATAGCAT
1 CGTGTAAGACCATATCTAGGATATGGCAT
77353593 TAGTATGGTA
Statistics
Matches: 98, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
41 27 0.28
42 35 0.36
43 36 0.37
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGATTT
Found at i:77353580 original size:85 final size:83
Alignment explanation
Indices: 77353439--77353592 Score: 209
Period size: 85 Copynumber: 1.8 Consensus size: 83
77353429 CTAAAATTAC
* * * * * *
77353439 GTGTAAGATCATATCTGGGATATGGCATCATATGAGATTTCGTGAAAGACCATATCTAGGATATG
1 GTGTAAGACCATAGCTAGGATATGGCATCATATGAGATTACATGAAAGACCATATCTAGGATATA
77353504 GCATCGATATGAGATTTT
66 GCATCGATATGAGATTTT
* * *
77353522 GTGTAAGACCATAGCTAGGTTATTGGCATCGATATGAGATTACATGTAAGACCATATCTGGGATA
1 GTGTAAGACCATAGCTAGGATA-TGGCATC-ATATGAGATTACATGAAAGACCATATCTAGGATA
77353587 TAGCAT
64 TAGCAT
77353593 TAGTATGGTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
83 18 0.30
84 7 0.12
85 35 0.58
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (83 bp):
GTGTAAGACCATAGCTAGGATATGGCATCATATGAGATTACATGAAAGACCATATCTAGGATATA
GCATCGATATGAGATTTT
Found at i:77361093 original size:53 final size:53
Alignment explanation
Indices: 77361025--77361473 Score: 444
Period size: 53 Copynumber: 8.5 Consensus size: 53
77361015 AACTTACCAT
** *
77361025 TGCCATGTCTTGACATGGTCTTATGTGGTATCTTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCATCAA
** * *
77361078 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCATCAA
* * *
77361131 TGCCATGTCTTGCCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-G-AACTCATCAA
* * * *
77361186 TGTCATGTCTTGACATGGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-GAACTCATCAA
* * * * **
77361240 TGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-T-T--AC-CA--AA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCATCAA
*** * * * *
77361286 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTACGAACTCATTAA
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCATCAA
* * * * *
77361340 TGCCATGCCTTGGCATGATCTTACATGGGATCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-G-AACTCATCAA
* * * *
77361395 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-GAACTCATCAA
* *
77361449 TGCCATGCCTTGGCATGGTCTTACA
1 TGCCATGTCTTGACATGGTCTTACA
77361474 GATATACTTA
Statistics
Matches: 330, Mismatches: 54, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
46 9 0.03
47 24 0.07
48 2 0.01
49 2 0.01
51 2 0.01
52 3 0.01
53 113 0.34
54 83 0.25
55 92 0.28
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCATCAA
Found at i:77361342 original size:100 final size:101
Alignment explanation
Indices: 77361198--77361535 Score: 403
Period size: 100 Copynumber: 3.3 Consensus size: 101
77361188 TCATGTCTTG
* *
77361198 ACATGGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
77361263 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* * * * * *
77361299 ACATGGTCTTACATGGTATCCTTGTCTTA-CGAACTCATTAATGCCATGCCTTGGCATGATCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* * * ***
77361363 CATGGGATCTTTTCCTTATAGTAACTCATCAATGCCATG-TCTTG
66 CAT--GA---TATCCTTAT-CTTAC-CA--AATGCCATGTTCCAA
*
77361407 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
* *
77361472 CA-GATATACTTATCTTACCAAATGACATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* *
77361507 ACATGGTCTTACATGGTATCTTTGCCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTA
77361536 GTGCCAATGC
Statistics
Matches: 194, Mismatches: 32, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
99 8 0.04
100 62 0.32
101 27 0.14
102 5 0.03
103 7 0.04
105 8 0.04
106 5 0.03
107 2 0.01
108 28 0.14
109 42 0.22
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (101 bp):
ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:77361382 original size:209 final size:208
Alignment explanation
Indices: 77361090--77361535 Score: 739
Period size: 209 Copynumber: 2.1 Consensus size: 208
77361080 CCATGTCTTG
** * * *
77361090 ACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTGCCATGGTCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTACGAACTCACCAATGCCATGCCTTGCCATGATCTTAC
* *
77361155 ATGGGACCTTTGCCTTATAGTAACTCATCAATGTCATGTCTTGACATGGTCTTACATGATTTCTT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
*
77361220 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTACCAA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACA-GATATACTTATCTTACCAA
*
77361285 ATGCCATGTTCCAA
195 ATGACATGTTCCAA
* ** *
77361299 ACATGGTCTTACATGGTATCCTTGTCTTACGAACTCATTAATGCCATGCCTTGGCATGATCTTAC
1 ACATGGTCTTACATGGTATCCTTGCCTTACGAACTCACCAATGCCATGCCTTGCCATGATCTTAC
* *
77361364 ATGGGATCTTTTCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
66 ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
77361429 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
131 TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
77361494 TGACATGTTCCAA
196 TGACATGTTCCAA
*
77361507 ACATGGTCTTACATGGTATCTTTGCCTTA
1 ACATGGTCTTACATGGTATCCTTGCCTTA
77361536 GTGCCAATGC
Statistics
Matches: 220, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
208 58 0.26
209 162 0.74
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (208 bp):
ACATGGTCTTACATGGTATCCTTGCCTTACGAACTCACCAATGCCATGCCTTGCCATGATCTTAC
ATGGGACCTTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCT
TGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAGATATACTTATCTTACCAAA
TGACATGTTCCAA
Found at i:77361668 original size:45 final size:44
Alignment explanation
Indices: 77361507--77361669 Score: 146
Period size: 45 Copynumber: 3.5 Consensus size: 44
77361497 CATGTTCCAA
* *
77361507 ACATGGTCTTACATGGTATCTTTGCCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGG-ATCCTTGCCTTA---CCAATGCCATATCTTG
** * * * * *
77361555 ATTTGGTCTTACATGGAGTCCTTAACCAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGA-TCCTT-GCC-TTACCAATGCCATATCTTG
* *
77361602 ACATGGTCTTACACAGGATCCTTGCCTTACCAATGCCATTTCTTG
1 ACATGGTCTTACA-TGGATCCTTGCCTTACCAATGCCATATCTTG
77361647 ACATGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGG-ATCCTT
77361670 AACCGTCAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 13
0.75 0.15 0.11
Matches are distributed among these distances:
44 2 0.02
45 34 0.37
46 2 0.02
47 30 0.33
48 21 0.23
49 2 0.02
50 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (44 bp):
ACATGGTCTTACATGGATCCTTGCCTTACCAATGCCATATCTTG
Found at i:77362635 original size:16 final size:16
Alignment explanation
Indices: 77362614--77362649 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
77362604 AATATGAACC
77362614 CTAGCATGAATTATTG
1 CTAGCATGAATTATTG
*
77362630 CTAGCATGAGTTATTG
1 CTAGCATGAATTATTG
77362646 CTAG
1 CTAG
77362650 AATAAGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (16 bp):
CTAGCATGAATTATTG
Found at i:77362657 original size:16 final size:16
Alignment explanation
Indices: 77362624--77362658 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
77362614 CTAGCATGAA
* *
77362624 TTATTGCTAGCATGAG
1 TTATTGCTAGAATAAG
77362640 TTATTGCTAGAATAAG
1 TTATTGCTAGAATAAG
77362656 TTA
1 TTA
77362659 AATCAAGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (16 bp):
TTATTGCTAGAATAAG
Found at i:77368384 original size:65 final size:65
Alignment explanation
Indices: 77368280--77368402 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
77368270 ATCCCCAATA
77368280 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
1 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
* * *
77368345 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAATAGGTAATTTTTTGAT
1 GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGAT
77368403 CATTTTTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.33, C:0.07, G:0.25, T:0.36
Consensus pattern (65 bp):
GTTAACGGTTGCAAATTGGAGGAGGATTATTATTGAACAGAACAGGTAAATTTCTGATTATGTTT
Found at i:77369289 original size:16 final size:16
Alignment explanation
Indices: 77369268--77369338 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
77369258 TGAATTACTT
77369268 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
77369284 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
*
77369300 AATACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
77369316 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCA
77369332 ATTACAG
1 ATTACAG
77369339 TGAACCAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:77379275 original size:44 final size:44
Alignment explanation
Indices: 77379187--77379276 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
77379177 GGTGAAACAA
* ** * * **
77379187 AATAGAAGTTGTGATTGTTATACCTTTAAAAATAATTATCATTT
1 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
77379231 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
1 AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
77379275 AA
1 AA
77379277 ATTACATCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.39
Consensus pattern (44 bp):
AATAGAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
Found at i:77379276 original size:17 final size:18
Alignment explanation
Indices: 77379243--77379277 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
77379233 TAGAAGTTGT
77379243 AATAATTACACATTTAAA
1 AATAATTACACATTTAAA
*
77379261 AATAATTAGA-ATTTAAA
1 AATAATTACACATTTAAA
77379278 TTACATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (18 bp):
AATAATTACACATTTAAA
Found at i:77388579 original size:49 final size:50
Alignment explanation
Indices: 77388491--77388736 Score: 259
Period size: 49 Copynumber: 4.9 Consensus size: 50
77388481 ATCTATTGTG
* * * *
77388491 AGGTCACGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATAATT
* **
77388541 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATAA-TT
* * * * **
77388591 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-AGATAATT
*
77388641 AGGTCACATGTGTAGTACTAAGTGCAGGCTA-TCATGTGTAC-CGAATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACT-ATGTGTACTAG-ATAATT
* * * *
77388691 -GGTCGCATGTGTAGTACTAAGCGCAAGCTACTATGCGTACTAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATA
77388737 GCCTTGTCTA
Statistics
Matches: 162, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
49 80 0.49
50 44 0.27
51 38 0.23
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATAATT
Found at i:77400851 original size:27 final size:26
Alignment explanation
Indices: 77400799--77400858 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77400789 ATATATAGAT
*
77400799 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
77400825 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
77400852 ATATCTG
1 ATATCTG
77400859 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:77407797 original size:16 final size:17
Alignment explanation
Indices: 77407766--77407799 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
77407756 TTTTGGGCTT
77407766 AATGGGCCAAAACGGGCC
1 AATGGGCC-AAACGGGCC
77407784 AATGGGCC-AACGGGCC
1 AATGGGCCAAACGGGCC
77407800 CACTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.29, G:0.35, T:0.06
Consensus pattern (17 bp):
AATGGGCCAAACGGGCC
Found at i:77410406 original size:26 final size:26
Alignment explanation
Indices: 77410371--77410422 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
77410361 AATGTGAAAG
*
77410371 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
77410397 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
77410423 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:77410451 original size:103 final size:105
Alignment explanation
Indices: 77410199--77410454 Score: 444
Period size: 103 Copynumber: 2.4 Consensus size: 105
77410189 GGTTGCTGTT
*
77410199 GTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAA
1 GTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCACATCTTTGAAATGTGAA
77410264 AAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
65 AAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
*
77410305 GTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCACATCTTTGAAATGTG-AA
1 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCACATCTTTGAAATGTGAAA
77410369 AGGGGGTTGCTATGTGCTGATT-CCCCGAGGGGTTGCTAA
66 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
** *
77410408 GTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
77410455 ATAACGGTTA
Statistics
Matches: 144, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
103 60 0.42
104 24 0.17
105 46 0.32
106 14 0.10
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (105 bp):
GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCACATCTTTGAAATGTGAAA
AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
Found at i:77417835 original size:104 final size:104
Alignment explanation
Indices: 77417677--77417942 Score: 446
Period size: 104 Copynumber: 2.6 Consensus size: 104
77417667 TTGTATATAA
** *
77417677 AGGGGTTGCTGTGTGCTGATTCCCC-GTTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
77417740 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
77417780 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
77417845 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* ** *
77417884 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCA
77417943 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
103 23 0.15
104 130 0.84
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:77421965 original size:40 final size:40
Alignment explanation
Indices: 77421891--77422112 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
77421881 AACCCAAGTA
* *
77421891 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* * * *
77421930 CCTTCGGGTCTTAGCTCGAATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* **
77421970 ACTTCGGGACTTAGCCCGGATATAGTCTCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
77422010 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
77422050 CCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
77422090 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
77422113 CATTCGAATA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 148 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:77423551 original size:14 final size:14
Alignment explanation
Indices: 77423529--77423571 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
77423519 TTTCATTTTG
77423529 TAACATAAAATTAT
1 TAACATAAAATTAT
*
77423543 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
77423556 TAACACAAAATAAT
1 TAACATAAAATTAT
77423570 TA
1 TA
77423572 TAATATGCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:77423565 original size:13 final size:13
Alignment explanation
Indices: 77423529--77423567 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
77423519 TTTCATTTTG
77423529 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
77423543 TAGCATAAAATAT
1 TAACATAAAATAT
*
77423556 TAACACAAAATA
1 TAACATAAAATA
77423568 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:77424489 original size:25 final size:25
Alignment explanation
Indices: 77424461--77424512 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
77424451 TTGTCTAAAT
77424461 GGTCATGGTCCTAATGAAGTCGCAC
1 GGTCATGGTCCTAATGAAGTCGCAC
77424486 GGTCATGGTCCTAATGAAGTCGCAC
1 GGTCATGGTCCTAATGAAGTCGCAC
77424511 GG
1 GG
77424513 CTGAGACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (25 bp):
GGTCATGGTCCTAATGAAGTCGCAC
Found at i:77427634 original size:28 final size:29
Alignment explanation
Indices: 77427583--77427638 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
77427573 ACAGGGGTTT
* *
77427583 TCACATGGCCAAGCACACTCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCGTGTCCC
*
77427612 TCACACGGCCTAG-ACACGCCCGTGTCC
1 TCACACGGCCAAGCACACGCCCGTGTCC
77427639 AAAACCCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.16
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCGTGTCCC
Found at i:77434766 original size:60 final size:60
Alignment explanation
Indices: 77434693--77434829 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
77434683 CAAGCTTTAC
* * *
77434693 TGGGCCTAAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCCT-AGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
77434754 TGGGCCTAGCCCATATCAGTATCAATCTAGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
*
77434814 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
77434830 TAACATAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
60 51 0.76
61 14 0.21
62 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:77435529 original size:8 final size:8
Alignment explanation
Indices: 77435502--77435532 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
77435492 CACAAATGCT
77435502 GGCTTTTC
1 GGCTTTTC
*
77435510 GGCATTTC
1 GGCTTTTC
77435518 GGCTTTTC
1 GGCTTTTC
77435526 GGCTTTT
1 GGCTTTT
77435533 GCCGATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GGCTTTTC
Found at i:77435821 original size:29 final size:29
Alignment explanation
Indices: 77435780--77435838 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
77435770 AAGCCCTTTG
* *
77435780 TTGTACTTGCCCTTGCTCACACTAACACT
1 TTGTACGTCCCCTTGCTCACACTAACACT
*
77435809 TTGTACGTCCCCTTGCTCACGCTAACACT
1 TTGTACGTCCCCTTGCTCACACTAACACT
77435838 T
1 T
77435839 ACAAAACCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.36, G:0.12, T:0.34
Consensus pattern (29 bp):
TTGTACGTCCCCTTGCTCACACTAACACT
Found at i:77437742 original size:16 final size:18
Alignment explanation
Indices: 77437723--77437756 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
77437713 CATACTAGAT
77437723 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
77437739 CCAAAACGATAGATAGTA
1 CCAAAACGATAGATAGTA
77437757 TGACGAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:77440856 original size:28 final size:28
Alignment explanation
Indices: 77440784--77440881 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
77440774 CATGAGATTG
* * * *
77440784 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77440813 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77440841 GCACTAAGTGTACGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77440868 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77440882 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77440895 original size:29 final size:27
Alignment explanation
Indices: 77440812--77440895 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
77440802 TAAATTGTAC
* * *
77440812 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTACGA-CTTAATTATAT
* *
77440840 AGCACTAAGTGTACGAGTTGATTATAT
1 AGCACTAAGTGTACGACTTAATTATAT
* *
77440867 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTAC-GACTTAAT-TATAT
77440896 TTTTGAATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 22 0.46
28 21 0.44
29 5 0.10
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTACGACTTAATTATAT
Found at i:77447429 original size:28 final size:28
Alignment explanation
Indices: 77447391--77447446 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
77447381 ATGGCTCAAA
*
77447391 TTTTTGTTATTTTGGAAGATTGAAATTC
1 TTTTTGGTATTTTGGAAGATTGAAATTC
77447419 TTTTTGGTATTTTGGAAGATTGAAATTC
1 TTTTTGGTATTTTGGAAGATTGAAATTC
77447447 GGCCAAGGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.04, G:0.20, T:0.52
Consensus pattern (28 bp):
TTTTTGGTATTTTGGAAGATTGAAATTC
Found at i:77449419 original size:25 final size:25
Alignment explanation
Indices: 77449391--77449469 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
77449381 CTAATGGCCG
77449391 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
77449416 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
77449438 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
77449463 ATGTGAT
1 ATGTGAT
77449470 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:77449426 original size:47 final size:47
Alignment explanation
Indices: 77449375--77449896 Score: 893
Period size: 47 Copynumber: 11.1 Consensus size: 47
77449365 GAAATGATAG
77449375 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77449422 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77449469 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
77449518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77449565 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT-TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77449611 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77449658 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77449705 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77449752 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77449799 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
77449846 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77449893 TAAG
1 TAAG
77449897 TCCCGAAGGG
Statistics
Matches: 455, Mismatches: 17, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 45 0.10
47 363 0.80
49 47 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:77450070 original size:36 final size:37
Alignment explanation
Indices: 77450015--77450092 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
77450005 CCGAGCTCTA
* *
77450015 AAGACCCGATGACTACGTGTGG-GAATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
77450051 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77450088 AAGAC
1 AAGAC
77450093 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77452005 original size:43 final size:43
Alignment explanation
Indices: 77451957--77452102 Score: 292
Period size: 43 Copynumber: 3.4 Consensus size: 43
77451947 TTGGTTTTCA
77451957 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
77452000 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
77452043 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
77452086 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
77452103 TTGAAATGCA
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:77452119 original size:29 final size:29
Alignment explanation
Indices: 77452084--77452157 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
77452074 GTTGTGAGAT
* *
77452084 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
77452113 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
77452142 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
77452158 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:77452591 original size:40 final size:40
Alignment explanation
Indices: 77452547--77452703 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
77452537 GAGTTACTAA
*
77452547 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
77452587 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
77452627 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
77452667 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
77452704 CGTGTATTCG
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:77452605 original size:80 final size:80
Alignment explanation
Indices: 77452468--77452697 Score: 234
Period size: 80 Copynumber: 2.9 Consensus size: 80
77452458 TCGAATGATG
** * * *
77452468 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGCGA-TATATCCGGGCTAAG-TCCCGAAGAGC
** *
77452529 ATTGGTGCGAGTTACTAAA
63 ATTCATGCGAGTGA-TAAA
*
77452548 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
* **
77452613 CATGCTAGTGATGTA
66 CATGCGAGTGATAAA
* * * * * *
77452628 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
77452693 CATGC
66 CATGC
77452698 TGGTGACGTG
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 102 0.80
81 18 0.14
82 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCGAGTGATAAA
Found at i:77452683 original size:120 final size:120
Alignment explanation
Indices: 77452468--77452698 Score: 297
Period size: 120 Copynumber: 1.9 Consensus size: 120
77452458 TCGAATGATG
** *
77452468 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
* * *
77452533 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
** * *
77452588 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAG-GC-TTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
* * *
77452651 TTCGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGCAATCATGCT
63 TTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
77452699 GGTGACGTGT
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
120 69 0.73
121 20 0.21
122 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTCATGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCAATCATGCTAGCGATGTA
Found at i:77453961 original size:15 final size:15
Alignment explanation
Indices: 77453941--77453972 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
77453931 ATTTTGTTAT
77453941 TTTGGAAGATTGAAA
1 TTTGGAAGATTGAAA
77453956 TTTGGAAGATTGAAA
1 TTTGGAAGATTGAAA
77453971 TT
1 TT
77453973 CGGCCAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (15 bp):
TTTGGAAGATTGAAA
Found at i:77455950 original size:25 final size:25
Alignment explanation
Indices: 77455922--77456000 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
77455912 CTAATGGCCG
77455922 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
77455947 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
77455969 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
77455994 ATGTGAT
1 ATGTGAT
77456001 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Done.