Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 229 of 362
Found at i:77455972 original size:47 final size:47
Alignment explanation
Indices: 77455906--77456428 Score: 893
Period size: 47 Copynumber: 11.1 Consensus size: 47
77455896 GAAATGATAG
77455906 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77455953 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77456000 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
77456049 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
77456096 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77456143 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77456190 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
77456237 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77456284 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77456331 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
77456378 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
77456425 TAAG
1 TAAG
77456429 TCCCGAAGGG
Statistics
Matches: 457, Mismatches: 17, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 410 0.90
49 47 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:77456601 original size:36 final size:37
Alignment explanation
Indices: 77456546--77456623 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
77456536 CCGAGCTCTA
* *
77456546 AAGACCCGATGACTACGTGTGG-GAATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
77456582 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77456619 AAGAC
1 AAGAC
77456624 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77458083 original size:15 final size:15
Alignment explanation
Indices: 77458063--77458102 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
77458053 ATCATCACTG
*
77458063 TCAGTAGCCTTGAAT
1 TCAGTAGCCCTGAAT
77458078 TCAGTAGCCCTGAAT
1 TCAGTAGCCCTGAAT
77458093 TCAGTAGCCC
1 TCAGTAGCCC
77458103 CGTGCTTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (15 bp):
TCAGTAGCCCTGAAT
Found at i:77458771 original size:16 final size:18
Alignment explanation
Indices: 77458752--77458784 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
77458742 CATACTAGAT
77458752 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
77458768 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
77458785 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:77459464 original size:42 final size:43
Alignment explanation
Indices: 77459364--77459464 Score: 159
Period size: 43 Copynumber: 2.4 Consensus size: 43
77459354 GCATCTCGCT
*
77459364 TGCTAGGCTCGAAGCCCAATATCATCTCACCGGCATTATAGCC
1 TGCTAGGCTCGAAGCCCAATATCATCTCACCGCCATTATAGCC
* *
77459407 TGCTAGGCTCGAAGCCCGATATCATTTCACCGCCATTAT-GCC
1 TGCTAGGCTCGAAGCCCAATATCATCTCACCGCCATTATAGCC
*
77459449 TGCTAGGCTCAAAGCC
1 TGCTAGGCTCGAAGCC
77459465 TGAATGTCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
42 18 0.33
43 36 0.67
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (43 bp):
TGCTAGGCTCGAAGCCCAATATCATCTCACCGCCATTATAGCC
Found at i:77473670 original size:55 final size:55
Alignment explanation
Indices: 77473576--77473682 Score: 128
Period size: 55 Copynumber: 1.9 Consensus size: 55
77473566 GCTATGGTCG
** * *
77473576 AGCCTGCCAAAACAACATGGGCGTGAGACACGCCAGTGTGGAAGAACCGTGGGCT
1 AGCCTGCCAAAACAACACAGGCGTGAGACAAGCCAGTGTGGAACAACCGTGGGCT
* *
77473631 AGCCTGCCAAAATAACACAGGCGT-ACGACAAGTCC-GTGTGGAACAACTGTGG
1 AGCCTGCCAAAACAACACAGGCGTGA-GACAAG-CCAGTGTGGAACAACCGTGG
77473683 TCGAACCTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
54 1 0.02
55 41 0.93
56 2 0.05
ACGTcount: A:0.31, C:0.25, G:0.30, T:0.14
Consensus pattern (55 bp):
AGCCTGCCAAAACAACACAGGCGTGAGACAAGCCAGTGTGGAACAACCGTGGGCT
Found at i:77478522 original size:38 final size:38
Alignment explanation
Indices: 77478471--77478660 Score: 335
Period size: 38 Copynumber: 5.0 Consensus size: 38
77478461 ATTTGATGTG
*
77478471 TATCCGGGTTAAATCCCGCAGGCTTCGTGCGGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
77478509 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
77478547 TATCCGGGTTAAATCCTGCAGGCTTCGTGCCGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
77478585 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
77478623 TATCCGGGTTAAATCCCGCAGGCTTAGTCCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
77478661 GATTCGAGCT
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 145 1.00
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:77479006 original size:44 final size:46
Alignment explanation
Indices: 77478871--77479050 Score: 194
Period size: 43 Copynumber: 4.0 Consensus size: 46
77478861 AGTATCAAAG
*
77478871 ATCGATATATGTGATTTTCGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATATGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGC
* * * * **
77478917 AGCGATATACGTGATTT-CGTGTAAGACCGCGTCTAGGATATTGGC
1 ATCGATATATGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGC
*
77478962 ATCGAT-TA-GTGATTTACGTGTAAGACCATGTCTGGGACAG-TGGC
1 ATCGATATATGTGATTTACGTGTAAGACCACGTCTGGGAC-GTTGGC
** * *
77479006 ATCGATAT-T-TGA-TTACACGTAATACCATGTCTGGGACGTTGGC
1 ATCGATATATGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGC
77479049 AT
1 AT
77479051 TGTACGAGCT
Statistics
Matches: 114, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
42 1 0.01
43 35 0.31
44 33 0.29
45 30 0.26
46 15 0.13
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (46 bp):
ATCGATATATGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:77494687 original size:40 final size:40
Alignment explanation
Indices: 77494544--77494680 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
77494534 NNNNNATAAT
77494544 TCCGGGCTAAG--CCGAAGGC-TTTGTGCGAG-TA-T--A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77494577 TCC-GGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77494615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77494656 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77494681 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
32 7 0.08
33 11 0.12
34 9 0.10
35 2 0.02
36 1 0.01
38 4 0.04
39 7 0.08
40 47 0.52
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77494698 original size:80 final size:72
Alignment explanation
Indices: 77494555--77494713 Score: 167
Period size: 79 Copynumber: 2.1 Consensus size: 72
77494545 CCGGGCTAAG
**
77494555 CCGAAGGCTTTGTGCGAGTATATCCGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAATCCGG
1 CCGAAGGCTTTGTGCGAGTATATCCGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAATCC-G
*
77494620 GTTAAGTC
65 GTTAAATC
* *
77494628 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGC-TTTGTGCGAG-TA-TAT--CC-GGCTAAGT-CCGAAGGCATTGGAACGAGTTA-CT
* *
77494692 ATATCCGGTTAAATT
58 AAATCCGGTTAAATC
77494707 CCGAAGG
1 CCGAAGG
77494714 TACGTGATTT
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
73 8 0.11
74 10 0.14
75 2 0.03
76 3 0.04
78 2 0.03
79 23 0.32
80 23 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (72 bp):
CCGAAGGCTTTGTGCGAGTATATCCGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAATCCGG
TTAAATC
Found at i:77501185 original size:56 final size:56
Alignment explanation
Indices: 77501120--77501239 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
77501110 ACAAGGGATG
77501120 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
77501176 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
77501232 ATGGGCAA
1 ATGGGCAA
77501240 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:77502518 original size:40 final size:40
Alignment explanation
Indices: 77502366--77502511 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
77502356 TCGAATGATG
* * * *
77502366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
77502406 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAATTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77502446 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77502487 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77502512 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77502529 original size:80 final size:80
Alignment explanation
Indices: 77502366--77502544 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
77502356 TCGAATGATG
* *
77502366 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
** *
77502431 GTGCGAATTACTAAA
66 GAACGAAGTACTAAA
* * * * *
77502446 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
77502509 TTGAACG-AGTAGCTATA
64 TTGAACGAAGTA-CTAAA
* *
77502526 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77502545 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 18 0.22
80 58 0.70
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAAGTACTAAA
Found at i:77508280 original size:38 final size:38
Alignment explanation
Indices: 77508229--77508492 Score: 411
Period size: 38 Copynumber: 6.9 Consensus size: 38
77508219 ATTTGATGTG
77508229 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
77508267 TATCCGGGTTAAATCCCACAGGCTTCGTACTGGTACTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
77508305 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
*
77508343 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
77508381 TATCGGGGTTAAATCACGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
77508419 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
77508457 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
77508493 GACTGGATTC
Statistics
Matches: 206, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
38 181 0.88
39 6 0.03
40 19 0.09
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:77508748 original size:45 final size:43
Alignment explanation
Indices: 77508678--77508846 Score: 135
Period size: 44 Copynumber: 3.8 Consensus size: 43
77508668 AGCGATTTAT
*
77508678 GTGATTTTCGTGTAAGACCAAGTCTGGGACGTTGGCAGCAATATA
1 GTGA-TTTCGTGTAAGACCAAGTCTGGGACATTGGCAGCAAT-TA
** * * *
77508723 CGTGATTTCGTGTAAGACCGCGTCTGGGATATTGGCATCGATTA
1 -GTGATTTCGTGTAAGACCAAGTCTGGGACATTGGCAGCAATTA
* * * *
77508767 GTGATTTATGTGTAAGACCATGTCTGGGACAGTGGCATCTATATT-
1 GTGATTT-CGTGTAAGACCAAGTCTGGGACATTGGCAGC-A-ATTA
* ** * *
77508812 -TGATTACACGTAAGACCATGTCTGGGACGTTGGCA
1 GTGATTTCGTGTAAGACCAAGTCTGGGACATTGGCA
77508847 TTGTACGAGC
Statistics
Matches: 102, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
43 31 0.30
44 33 0.32
45 31 0.30
46 7 0.07
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GTGATTTCGTGTAAGACCAAGTCTGGGACATTGGCAGCAATTA
Found at i:77508792 original size:44 final size:45
Alignment explanation
Indices: 77508678--77508810 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
77508668 AGCGATTTAT
* *
77508678 GTGATTTTCGTGTAAGACCAAGTCTGGGACGTTGGCAGCAATATAC
1 GTGATTTT-GTGTAAGACCAAGTCTGGGACATTGGCATCAATATAC
* ** * *
77508724 GTGATTTCGTGTAAGACCGCGTCTGGGATATTGGCATCGAT-TA-
1 GTGATTTTGTGTAAGACCAAGTCTGGGACATTGGCATCAATATAC
* * *
77508767 GTGATTTATGTGTAAGACCATGTCTGGGACAGTGGCATCTATAT
1 GTGATTT-TGTGTAAGACCAAGTCTGGGACATTGGCATCAATAT
77508811 TTGATTACAC
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
43 7 0.10
44 30 0.42
45 28 0.39
46 7 0.10
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.32
Consensus pattern (45 bp):
GTGATTTTGTGTAAGACCAAGTCTGGGACATTGGCATCAATATAC
Found at i:77512312 original size:41 final size:42
Alignment explanation
Indices: 77512264--77512374 Score: 131
Period size: 41 Copynumber: 2.7 Consensus size: 42
77512254 TGAGACTACG
* *
77512264 TGTAAGACCATATCTGGGATAGT-GCATCGATATGAGACTT-T
1 TGTAAGACCATATCTGGGATAGTGGCATCGATACGAGA-TTAA
* *
77512305 TGTAAGACCATAGT-TGGGCTATTGGCATCGATACGAGATTACA
1 TGTAAGACCATA-TCTGGGATAGTGGCATCGATACGAGATTA-A
77512348 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATATCTGGGATAGTGGCAT
77512375 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
41 21 0.35
42 21 0.35
43 18 0.30
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATAGTGGCATCGATACGAGATTAA
Found at i:77512373 original size:42 final size:42
Alignment explanation
Indices: 77512255--77512374 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 42
77512245 TAGGGTTAAT
* * *
77512255 GAGACTACGTGTAAGACCATATCTGGGATA-GTGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGATATG-GCATCGATAC
* *
77512297 GAGACTT--TTGTAAGACCATAGT-TGGGCTATTGGCATCGATAC
1 GAGA-TTACATGTAAGACCATA-TCTGGGATA-TGGCATCGATAC
77512339 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
77512375 TGGTATGGTA
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
41 20 0.31
42 25 0.38
43 20 0.31
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:77532480 original size:40 final size:40
Alignment explanation
Indices: 77532386--77532610 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
77532376 TATTCGAATG
* *
77532386 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * *
77532427 ATAACCGGACTAAGATCCGAAGGCATTCGTGCAAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
77532467 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
77532507 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
77532547 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
77532587 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
77532611 CTTGCACAAG
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:77536526 original size:33 final size:33
Alignment explanation
Indices: 77536489--77536578 Score: 162
Period size: 33 Copynumber: 2.7 Consensus size: 33
77536479 ATTTCAATTA
77536489 GGATTTAGCCTGGACTGGTAATCCTAGTTGACT
1 GGATTTAGCCTGGACTGGTAATCCTAGTTGACT
*
77536522 GGATTTAGCCTGGACTGGTAATCCTAGTTGATT
1 GGATTTAGCCTGGACTGGTAATCCTAGTTGACT
*
77536555 GGATTTAGCCTGGACTAGTAATCC
1 GGATTTAGCCTGGACTGGTAATCC
77536579 AGATTAGACT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (33 bp):
GGATTTAGCCTGGACTGGTAATCCTAGTTGACT
Found at i:77538931 original size:64 final size:64
Alignment explanation
Indices: 77538850--77539032 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
77538840 AGACATTATG
* *
77538850 ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77538914 ATGTAGCTAGGTCGCATGCGTGATTCCAGGTAAGGACACCATGTAGATAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTA--TATGTACACCATGTAGACAAGAGAGCTACGAGATA
77538979 A
64 A
* * *
77538980 ACTG--GCTAGGTCACATGGGTGGTACTA-AGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATA-TGTACACCATGTAG-ACAAGAGAGC
77539033 CAAACTATAT
Statistics
Matches: 97, Mismatches: 17, Indels: 11
0.78 0.14 0.09
Matches are distributed among these distances:
62 2 0.02
63 18 0.19
64 25 0.26
65 18 0.19
66 32 0.33
67 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77538972 original size:66 final size:64
Alignment explanation
Indices: 77538826--77538978 Score: 180
Period size: 66 Copynumber: 2.3 Consensus size: 64
77538816 CATCATGTGT
* * * * *
77538826 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATATGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCATAAGGACACCATG
77538891 TAG
62 TAG
* *
77538894 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGATTCCAGGTAAGGACACCATGTA
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACCA--TAAGGACACCATGTA
77538959 G
64 G
*
77538960 ATAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
77538979 AACTGGCTAG
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 25 0.34
65 3 0.04
66 33 0.45
68 13 0.18
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACCATAAGGACACCATGTAG
Found at i:77568240 original size:22 final size:20
Alignment explanation
Indices: 77568215--77568257 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 20
77568205 TTTATTACTT
77568215 ATTCG-ACATGTATACTTGCACA
1 ATTCGCACAT-TATA-TT-CACA
77568237 ATTCGCACATTATATTCACA
1 ATTCGCACATTATATTCACA
77568257 A
1 A
77568258 GCAACAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.25
21 2 0.10
22 9 0.45
23 4 0.20
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (20 bp):
ATTCGCACATTATATTCACA
Found at i:77579898 original size:32 final size:33
Alignment explanation
Indices: 77579857--77579935 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 33
77579847 TTTGGCAAAA
* *
77579857 AAAAAATTTAAAATATCATTTATCATTAT-ATT
1 AAAATATTTAAAATATAATTTATCATTATGATT
* * *
77579889 AAAATATTT-AAATTTAATTTATTATTATGTTT
1 AAAATATTTAAAATATAATTTATCATTATGATT
77579921 AAAAT-TTTAAAATAT
1 AAAATATTTAAAATAT
77579936 TTTATGTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 19 0.49
32 20 0.51
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (33 bp):
AAAATATTTAAAATATAATTTATCATTATGATT
Found at i:77579946 original size:31 final size:32
Alignment explanation
Indices: 77579857--77579947 Score: 89
Period size: 31 Copynumber: 2.9 Consensus size: 32
77579847 TTTGGCAAAA
* * * *
77579857 AAAAAATTTAAAATATCATTTATCATTAT-ATT
1 AAAATATTT-AAATATAATTTATTATTATGTTT
*
77579889 AAAATATTTAAATTTAATTTATTATTATGTTT
1 AAAATATTTAAATATAATTTATTATTATGTTT
*
77579921 AAAAT-TTTAAA-ATATTTTATGTATTAT
1 AAAATATTTAAATATAATTTAT-TATTAT
77579948 TAATTTTACA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
30 7 0.14
31 28 0.56
32 15 0.30
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (32 bp):
AAAATATTTAAATATAATTTATTATTATGTTT
Found at i:77579975 original size:26 final size:25
Alignment explanation
Indices: 77579923--77579971 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
77579913 TTATGTTTAA
*
77579923 AATTTTAAAATATTTTATGTATTATT
1 AATTTTAAAATAATTTA-GTATTATT
77579949 AATTTTACAAATAATTTA-TATTA
1 AATTTTA-AAATAATTTAGTATTA
77579972 ATTACTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 5 0.24
26 7 0.33
27 9 0.43
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
AATTTTAAAATAATTTAGTATTATT
Found at i:77587766 original size:20 final size:20
Alignment explanation
Indices: 77587719--77587766 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
77587709 CAAATGTGAT
*
77587719 TTTTATTAGTTTTTAGTAAA
1 TTTTATAAGTTTTTAGTAAA
* *
77587739 TTTGATAAGTTTTTA-TAAC
1 TTTTATAAGTTTTTAGTAAA
77587758 TTCTTATAA
1 TT-TTATAA
77587767 TTATTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.56
Consensus pattern (20 bp):
TTTTATAAGTTTTTAGTAAA
Found at i:77589728 original size:18 final size:17
Alignment explanation
Indices: 77589689--77589730 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
77589679 GATAGAAATA
*
77589689 AAAATTATTTTATATTT
1 AAAATTATTTTATAATT
*
77589706 TAAATGTATTTTATAATT
1 AAAAT-TATTTTATAATT
77589724 AAAATTA
1 AAAATTA
77589731 AATGGTACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AAAATTATTTTATAATT
Found at i:77591439 original size:8 final size:8
Alignment explanation
Indices: 77591426--77591457 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
77591416 CTAGATCGGC
77591426 AAAAGCCG
1 AAAAGCCG
77591434 AAAAGCCG
1 AAAAGCCG
*
77591442 AAATGCCG
1 AAAAGCCG
77591450 AAAAGCCG
1 AAAAGCCG
77591458 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:77591738 original size:28 final size:28
Alignment explanation
Indices: 77591698--77591762 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
77591688 ATGTACTATT
*
77591698 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATGACCATA
* *
77591726 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATA
77591754 ATACCCCTA
1 ATACCCCTA
77591763 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATA
Found at i:77591926 original size:27 final size:27
Alignment explanation
Indices: 77591868--77591957 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
77591858 AGGAAGCGTC
77591868 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
77591896 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
77591923 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
77591952 CTGGTG
1 CTGGTG
77591958 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:77591976 original size:55 final size:56
Alignment explanation
Indices: 77591868--77591982 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
77591858 AGGAAGCGTC
* *
77591868 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
77591923 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
77591979 CTGG
1 CTGG
77591983 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:77595740 original size:40 final size:40
Alignment explanation
Indices: 77595692--77595958 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
77595682 GCAAACACAT
* *
77595692 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
77595732 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77595772 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77595812 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77595852 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77595892 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77595932 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
77595959 ATCCAATGTT
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:77604540 original size:40 final size:40
Alignment explanation
Indices: 77604492--77604757 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
77604482 GCAAACACAT
* *
77604492 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
77604532 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77604572 TTGCCTTC-GGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77604611 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77604651 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77604691 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77604731 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
77604758 ATCCAATGTT
Statistics
Matches: 215, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 36 0.17
40 179 0.83
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:77613800 original size:28 final size:29
Alignment explanation
Indices: 77613764--77613864 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
77613754 TATAGTAAGT
* * *
77613764 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
* *
77613792 TCGGACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
77613821 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
77613850 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77613865 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:77615456 original size:28 final size:28
Alignment explanation
Indices: 77615416--77615480 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
77615406 ATGTACTATT
*
77615416 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATGACCATA
* *
77615444 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATA
77615472 ATACCCCTA
1 ATACCCCTA
77615481 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATA
Found at i:77615645 original size:27 final size:27
Alignment explanation
Indices: 77615587--77615676 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
77615577 AGGAAGCGTC
77615587 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
77615615 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
77615642 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
77615671 CTGGTG
1 CTGGTG
77615677 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:77615695 original size:55 final size:56
Alignment explanation
Indices: 77615587--77615701 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
77615577 AGGAAGCGTC
* *
77615587 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
77615642 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
77615698 CTGG
1 CTGG
77615702 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:77617209 original size:5 final size:5
Alignment explanation
Indices: 77617199--77617224 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
77617189 GTTGGTTGAA
77617199 TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT T
77617225 ATATAGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:77625422 original size:40 final size:40
Alignment explanation
Indices: 77625385--77625609 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
77625375 GCTACTCGTT
* *
77625385 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
77625425 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
77625465 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
77625505 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
77625544 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
77625585 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
77625610 CATCATTCGA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:77625569 original size:119 final size:120
Alignment explanation
Indices: 77625387--77625609 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
77625377 TACTCGTTCA
*
77625387 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
77625452 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCACACC
* * **
77625507 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
77625569 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
77625610 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACC
Found at i:77633672 original size:39 final size:40
Alignment explanation
Indices: 77633507--77633678 Score: 249
Period size: 40 Copynumber: 4.3 Consensus size: 40
77633497 GCTACTCGTT
* *
77633507 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
77633547 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
77633587 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
77633627 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
77633666 CAAATGCCTTCGG
1 CAAATGCCTTCGG
77633679 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 10, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
39 33 0.27
40 86 0.71
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:77633715 original size:79 final size:79
Alignment explanation
Indices: 77633507--77633716 Score: 217
Period size: 79 Copynumber: 2.6 Consensus size: 79
77633497 GCTACTCGTT
* * * * * *
77633507 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAACCCGA
*
77633572 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
77633587 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGA
1 CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAACCCGA
*
77633651 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* ** * *
77633666 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTC
1 CAAATACCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTC
77633717 ATGACTTAGC
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
78 3 0.03
79 55 0.50
80 48 0.44
81 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATACCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAACCCGAA
ATTAGTAACTCGCA
Found at i:77633716 original size:119 final size:120
Alignment explanation
Indices: 77633509--77633731 Score: 265
Period size: 119 Copynumber: 1.9 Consensus size: 120
77633499 TACTCGTTCA
**
77633509 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
77633574 TTAGTAACTCGCACAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATACCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
77633629 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * * *
77633691 ATATGGTCACTTAGCACAAA-GCCTTCATGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATACCTTCAGGACTTAACCCGGA
77633732 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
118 4 0.05
119 62 0.72
120 20 0.23
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATACCTTCAGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:77643445 original size:26 final size:26
Alignment explanation
Indices: 77643386--77643442 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 26
77643376 ATATTCTGGC
*
77643386 AAAATTACAATTTTGCCCCTAATTGT
1 AAAATTACAATTTTGCCCCTAATCGT
77643412 CAAAATTAC-ATTTTGCCCCTAGACTCGT
1 -AAAATTACAATTTTGCCCCTA-A-TCGT
77643440 AAA
1 AAA
77643443 TTAAACTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 12 0.44
27 12 0.44
28 3 0.11
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (26 bp):
AAAATTACAATTTTGCCCCTAATCGT
Found at i:77646214 original size:96 final size:94
Alignment explanation
Indices: 77646047--77646232 Score: 264
Period size: 96 Copynumber: 2.0 Consensus size: 94
77646037 GAGGAGTACA
* * * * *
77646047 ATTGATCTCTCACCTGTTGTGAAATGTTATTGGTGTAGTCCAAAAGATCATTAGGGTTTTCAATG
1 ATTGAGCTATCACCTGTTGTGAAATGTTAATGGTGTAGTCCAAAAGATCATAAGGGTTTCCAATG
*
77646112 TTCAATTAAATATCCAAATAGAGAGAATAAG
66 TCCAATTAAATATCC-AATA-AGAGAATAAG
* * * *
77646143 ATTGAGCTATCACCTTTTGTGCAATGTTAATGGTGTAGTTCAAAATATCATAAGGGTTTCCAATG
1 ATTGAGCTATCACCTGTTGTGAAATGTTAATGGTGTAGTCCAAAAGATCATAAGGGTTTCCAATG
77646208 TCCAATTAAATATCCAATAAGAGAA
66 TCCAATTAAATATCCAATAAGAGAA
77646233 GAAAGTAAGT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
94 6 0.08
95 4 0.05
96 70 0.88
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (94 bp):
ATTGAGCTATCACCTGTTGTGAAATGTTAATGGTGTAGTCCAAAAGATCATAAGGGTTTCCAATG
TCCAATTAAATATCCAATAAGAGAATAAG
Found at i:77650473 original size:19 final size:20
Alignment explanation
Indices: 77650449--77650486 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
77650439 GGTACCACCA
77650449 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
77650468 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
77650487 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:77650824 original size:93 final size:93
Alignment explanation
Indices: 77650716--77650886 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
77650706 GCCCCTAAGT
* * *
77650716 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
77650781 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
77650809 GAACTCGAACTCAACTCAAAGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
77650874 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77650887 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:77650879 original size:46 final size:46
Alignment explanation
Indices: 77650711--77650883 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
77650701 AACCCGCCCC
* * * *
77650711 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
77650757 TAAGTGAACTC-AGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGA-ACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
77650805 TCA-CGAACTCGAACTCAACTCAAAGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
77650850 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
77650884 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 3 0.03
46 57 0.56
47 26 0.26
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77651337 original size:30 final size:30
Alignment explanation
Indices: 77651303--77651362 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
77651293 ATTTAATACG
77651303 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
77651333 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
77651363 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:77681548 original size:45 final size:46
Alignment explanation
Indices: 77681387--77681557 Score: 199
Period size: 45 Copynumber: 3.7 Consensus size: 46
77681377 TAACCCGCCC
* * *
77681387 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCATCCA
* * *
77681432 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---CGA-TTGCATCCA
* *
77681480 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCATCCA
77681524 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77681558 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 39 0.36
46 20 0.19
47 29 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGATTGCATCCA
Found at i:77681549 original size:92 final size:92
Alignment explanation
Indices: 77681392--77681560 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
77681382 CGCCCTAAGT
* *
77681392 GAACTCGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAAC
77681457 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
77681484 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAA
77681548 CGAGTTCGGATGC
65 CGAGTTCGGATGC
77681561 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 51 0.71
93 21 0.29
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACGATTGCATCCATAAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77683944 original size:15 final size:15
Alignment explanation
Indices: 77683912--77683974 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
77683902 CAAAGATAAC
77683912 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
77683925 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
77683940 GAGAAAT-CAGAATA
1 AAGAAATCCAGAATA
77683954 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
77683969 AAGAAA
1 AAGAAA
77683975 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
13 6 0.14
14 14 0.33
15 23 0.53
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:77683973 original size:29 final size:28
Alignment explanation
Indices: 77683912--77683975 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 28
77683902 CAAAGATAAC
*
77683912 AAGAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACAGAATAAAGAAATCCAAGATA
*
77683940 GAGAAATCAGAATAAAGAAATCC-AGAATA
1 AAGAAA-CAGAATAAAGAAATCCAAG-ATA
77683969 AAGAAAC
1 AAGAAAC
77683976 CCAAGATACG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 8 0.26
29 23 0.74
ACGTcount: A:0.61, C:0.12, G:0.16, T:0.11
Consensus pattern (28 bp):
AAGAAACAGAATAAAGAAATCCAAGATA
Found at i:77686965 original size:46 final size:46
Alignment explanation
Indices: 77686898--77687065 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
77686888 CGCCCCTAAG
* * *
77686898 TGAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
* * *
77686944 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATCCATAAA
* * * *
77686991 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
77687037 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
77687066 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 54 0.54
47 28 0.28
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAAA
Found at i:77687004 original size:93 final size:93
Alignment explanation
Indices: 77686899--77687069 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
77686889 GCCCCTAAGT
* *
77686899 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
77686964 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
77686992 GAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
77687057 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77687070 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77687085 original size:46 final size:45
Alignment explanation
Indices: 77686944--77687085 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
77686934 CATCCATAAA
77686944 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * * *
77686991 CGAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCTAG
77687037 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
77687083 TGA
1 TGA
77687086 CATGTCACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 32 0.42
47 30 0.39
49 3 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:77696703 original size:43 final size:42
Alignment explanation
Indices: 77696636--77696716 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
77696626 TCTAAACTCA
* **
77696636 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
77696678 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATT-TAGCCTGCTAGGCCCGAAGCCCGATA
77696717 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 11 0.32
43 23 0.68
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:77698221 original size:28 final size:28
Alignment explanation
Indices: 77698189--77698258 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
77698179 AATGAGATTG
77698189 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
77698217 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
77698245 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77698259 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:77703087 original size:85 final size:85
Alignment explanation
Indices: 77702944--77703207 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
77702934 GGCCGGCCAT
77702944 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
77703009 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
77703029 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTTGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
77703094 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
77703114 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
77703179 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
77703199 GGGCATGGG
1 GAGCATGGG
77703208 CAATAAAATA
Statistics
Matches: 176, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 176 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:77703157 original size:44 final size:44
Alignment explanation
Indices: 77703024--77703157 Score: 111
Period size: 39 Copynumber: 3.1 Consensus size: 44
77703014 GATTAATAAA
77703024 ATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTC
1 ATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTC
* ** ** * * *
77703068 ATAAACATGTTTGGGTAGTG-CATTATG-TAAGGATTAATAA-A----
1 ATAAAGA-GCATGGGT-G-GACAAGATGTTATGG-CTAAAAACATGTC
77703109 ATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTC
1 ATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTC
77703153 ATAAA
1 ATAAA
77703158 CATGTTGGGG
Statistics
Matches: 63, Mismatches: 16, Indels: 22
0.62 0.16 0.22
Matches are distributed among these distances:
38 1 0.02
39 11 0.17
40 11 0.17
41 6 0.10
44 11 0.17
45 11 0.17
46 11 0.17
47 1 0.02
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.26
Consensus pattern (44 bp):
ATAAAGAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTC
Found at i:77704595 original size:53 final size:47
Alignment explanation
Indices: 77704469--77704679 Score: 298
Period size: 47 Copynumber: 4.4 Consensus size: 47
77704459 TTAGGATTTT
* *
77704469 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
77704516 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
***
77704563 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGCGTGATAAGGCCGAATGGCCA
* *
77704616 ATGTGATGAATGTTAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
77704663 ATGTGATGAATGT-AACA
1 ATGTGATGAATGTGAACA
77704680 CCCCGAACCT
Statistics
Matches: 148, Mismatches: 10, Indels: 13
0.87 0.06 0.08
Matches are distributed among these distances:
46 4 0.03
47 100 0.68
48 1 0.01
52 1 0.01
53 42 0.28
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
Found at i:77704611 original size:100 final size:100
Alignment explanation
Indices: 77704491--77704675 Score: 343
Period size: 100 Copynumber: 1.9 Consensus size: 100
77704481 TGAACATGCG
*
77704491 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGA
77704556 ATGGCCAATGTGATGAATGTGAACCTGTATATATA
66 ATGGCCAATGTGATGAATGTGAACCTGTATATATA
* *
77704591 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTTAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGA
77704656 ATGGCCAATGTGATGAATGT
66 ATGGCCAATGTGATGAATGT
77704676 AACACCCCGA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (100 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACCTGTATATATA
Found at i:77706054 original size:27 final size:27
Alignment explanation
Indices: 77706024--77706226 Score: 230
Period size: 27 Copynumber: 7.5 Consensus size: 27
77706014 TATTGAGTCT
* * *
77706024 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAATCAAATC
*
77706051 GCACACTTAGTGCTACGTAATC-AATC
1 GCACACTTAGTGCTACATAATCAAATC
*
77706077 GCACACTTAGTGCTACATAATCAATCTC
1 GCACACTTAGTGCTACATAATCAA-ATC
* ** *
77706105 GCACACTTAGTGCCACATGGTCAATTC
1 GCACACTTAGTGCTACATAATCAAATC
** **
77706132 GCACACTTAGTGC-ATCATTTTCATTTC
1 GCACACTTAGTGCTA-CATAATCAAATC
* *
77706159 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
*
77706186 GCACACTTAGTGCTACATAGTCAAATC
1 GCACACTTAGTGCTACATAATCAAATC
77706213 GCACACTTAGTGCT
1 GCACACTTAGTGCT
77706227 GTACAATTTA
Statistics
Matches: 154, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 25 0.16
27 105 0.68
28 24 0.16
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAATCAAATC
Found at i:77708224 original size:47 final size:47
Alignment explanation
Indices: 77708155--77708246 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
77708145 GGCTATCACA
* *
77708155 ATGAATGTGAACATGCATATATGAGATAAGTCCGAATGGCCAATGTG
1 ATGAATGTGAACATGAATATATGAGATAAGGCCGAATGGCCAATGTG
* * *
77708202 ATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGAATGTGAACATGAATATATGAGATAAGGCCGAATGGCCAATG
77708247 CGAAACGTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGAATGTGAACATGAATATATGAGATAAGGCCGAATGGCCAATGTG
Found at i:77708505 original size:37 final size:37
Alignment explanation
Indices: 77708455--77708600 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
77708445 GGAAATATAT
*
77708455 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
77708492 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
77708529 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
77708566 TCCAGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
77708601 CGTCTGAACT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:77712770 original size:28 final size:28
Alignment explanation
Indices: 77712738--77712807 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
77712728 AATGAGATTG
77712738 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
77712766 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
77712794 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
77712808 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:77714461 original size:28 final size:28
Alignment explanation
Indices: 77714430--77714501 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
77714420 TTGATATTTT
*
77714430 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
77714458 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
77714486 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
77714502 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:77716584 original size:31 final size:33
Alignment explanation
Indices: 77716548--77716612 Score: 98
Period size: 31 Copynumber: 2.0 Consensus size: 33
77716538 AAAAAGTCAA
*
77716548 AATTTAAATAATTT-TACT-ATAAATATGAAAT
1 AATTTAAATAATTTATACTAATAAATATAAAAT
*
77716579 AATTTAAATAATTTATGCTAATAAATATAAAAT
1 AATTTAAATAATTTATACTAATAAATATAAAAT
77716612 A
1 A
77716613 TTATAAACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 14 0.47
32 3 0.10
33 13 0.43
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (33 bp):
AATTTAAATAATTTATACTAATAAATATAAAAT
Found at i:77724907 original size:12 final size:12
Alignment explanation
Indices: 77724890--77724915 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77724880 CATTCTGAAG
77724890 TATATATATACA
1 TATATATATACA
77724902 TATATATATACA
1 TATATATATACA
77724914 TA
1 TA
77724916 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:77725429 original size:28 final size:28
Alignment explanation
Indices: 77725361--77725542 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
77725351 CATGAGATTG
* * * *
77725361 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77725390 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77725418 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77725446 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77725474 GCACTAAGCGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
77725502 GCACTAAGTGTACGAG-TTAATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77725529 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77725543 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 22 0.15
28 103 0.72
29 18 0.13
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77742691 original size:10 final size:11
Alignment explanation
Indices: 77742661--77742694 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
77742651 ACTTAATATG
*
77742661 CCACCGGTACT
1 CCACCGGAACT
77742672 CCACCGGAACT
1 CCACCGGAACT
77742683 CCA-CGGAACT
1 CCACCGGAACT
77742693 CC
1 CC
77742695 TCCGTCAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.12
Consensus pattern (11 bp):
CCACCGGAACT
Found at i:77752825 original size:37 final size:36
Alignment explanation
Indices: 77752749--77752845 Score: 141
Period size: 37 Copynumber: 2.8 Consensus size: 36
77752739 CGAATAGTCC
*
77752749 CCACACGTAGTTATCGGGTCTTA--C---CAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAATCT
77752780 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACA-AATCT
77752817 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
77752846 ATATATTTCC
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
31 22 0.37
33 1 0.02
36 2 0.03
37 34 0.58
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (36 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAATCT
Found at i:77753044 original size:48 final size:48
Alignment explanation
Indices: 77752986--77753275 Score: 472
Period size: 48 Copynumber: 6.0 Consensus size: 48
77752976 ATATACACAC
* * *
77752986 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
77753034 ATCTCATACATATTTCACACTAGCCATTCAACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77753082 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
77753130 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77753178 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
77753226 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
77753274 AT
1 AT
77753276 TTATCTTGTA
Statistics
Matches: 225, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 225 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:77761551 original size:29 final size:30
Alignment explanation
Indices: 77761519--77761583 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
77761509 GTTTATCATC
77761519 ATATATATTATATATACTAAAACT-CACAT
1 ATATATATTATATATACTAAAACTGCACAT
* * *
77761548 ATATATATTATGTATAGTAGAACTGCACAT
1 ATATATATTATATATACTAAAACTGCACAT
77761578 ATATAT
1 ATATAT
77761584 GTACTATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 21 0.66
30 11 0.34
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (30 bp):
ATATATATTATATATACTAAAACTGCACAT
Found at i:77761690 original size:32 final size:32
Alignment explanation
Indices: 77761610--77761722 Score: 127
Period size: 32 Copynumber: 3.5 Consensus size: 32
77761600 AAACCCGTAC
* * *
77761610 AAATATATTATACATATAACACTCATGCACGT
1 AAATATATTATATATTTAACACCCATGCACGT
77761642 AAATATATTATATATTTAACACCCATGCACGT
1 AAATATATTATATATTTAACACCCATGCACGT
* * * * *
77761674 ATATATATTATTTATTTAACATCCACGCATGTT
1 AAATATATTATATATTTAACACCCATGCACG-T
*
77761707 AATAAATATTATATAT
1 AA-ATATATTATATAT
77761723 AAAACACAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
32 55 0.81
33 2 0.03
34 11 0.16
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (32 bp):
AAATATATTATATATTTAACACCCATGCACGT
Found at i:77776706 original size:43 final size:43
Alignment explanation
Indices: 77776601--77776712 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
77776591 TGACATCGTG
* * *
77776601 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATA
1 TAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTACATA
* *
77776644 TAAGACCATGTCTGGGACATTGGCATCGATATTGA-A-TTACATG
1 TAAGACCATGTCTGGGACATAGGCATCG--ATTGAGATTTACATA
* *
77776687 TGAGACCATGTCTGGGACATCGGCAT
1 TAAGACCATGTCTGGGACATAGGCAT
77776713 TGTAATTGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
43 54 0.90
44 1 0.02
45 5 0.08
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATAGGCATCGATTGAGATTTACATA
Found at i:77780318 original size:13 final size:13
Alignment explanation
Indices: 77780300--77780326 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77780290 TAAGTAATCG
77780300 CACATGGGCGTGT
1 CACATGGGCGTGT
77780313 CACATGGGCGTGT
1 CACATGGGCGTGT
77780326 C
1 C
77780327 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:77785216 original size:28 final size:28
Alignment explanation
Indices: 77785176--77785230 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
77785166 ATCCCTTATG
*
77785176 GTGCAGATATCCTAAACCCTCAAATCCC
1 GTGCAAATATCCTAAACCCTCAAATCCC
77785204 GTGCAAATATCCTAAACCCTCAAATCC
1 GTGCAAATATCCTAAACCCTCAAATCC
77785231 TTACTTCCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.35, G:0.09, T:0.22
Consensus pattern (28 bp):
GTGCAAATATCCTAAACCCTCAAATCCC
Found at i:77788470 original size:29 final size:28
Alignment explanation
Indices: 77788438--77788503 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 28
77788428 CCTATAACCG
77788438 CATATATATTATATATAATAGAACTCACA
1 CATATATATTATATATAATAGAACTCA-A
* * *
77788467 CATATATATTATGTATAGTAGAACTGAA
1 CATATATATTATATATAATAGAACTCAA
77788495 CATATATAT
1 CATATATAT
77788504 GTATTATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 10 0.29
29 24 0.71
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.36
Consensus pattern (28 bp):
CATATATATTATATATAATAGAACTCAA
Found at i:77788514 original size:32 final size:30
Alignment explanation
Indices: 77788438--77788515 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
77788428 CCTATAACCG
* *
77788438 CATATA-TATTATATATAATAGAACTCACA
1 CATATATTATTATGTATAATAGAACTAACA
*
77788467 CATATA-TATTATGTATAGTAGAACTGAACA
1 CATATATTATTATGTATAATAGAACT-AACA
*
77788497 TATATATGTATTATGTATA
1 CATATAT-TATTATGTATA
77788516 TAGCATACTC
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 23 0.55
30 8 0.19
32 11 0.26
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (30 bp):
CATATATTATTATGTATAATAGAACTAACA
Found at i:77788576 original size:34 final size:34
Alignment explanation
Indices: 77788532--77788650 Score: 148
Period size: 34 Copynumber: 3.5 Consensus size: 34
77788522 ACTCGCGCAA
* *
77788532 ATATACTATACATATAACACCCATGCACCCAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
* * *
77788566 ATATATTATACATATAACACCAATACACATAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
* * * *
77788600 ATTTATTATATATTTAACACCCATGCACGCAAAT
1 ATATATTATACATATAACACCCATGCACACAAAT
*
77788634 ATATATTATATATATAA
1 ATATATTATACATATAA
77788651 ATAACAAAAC
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 71 1.00
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (34 bp):
ATATATTATACATATAACACCCATGCACACAAAT
Found at i:77789591 original size:43 final size:43
Alignment explanation
Indices: 77789493--77789592 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
77789483 TTATATGGAA
* * * *
77789493 AAACACTGCTATAGTACATGACTTTTAGTAGTGCTTTCCCCAT
1 AAACACTGCTAAAGAACATGACTTTTAGTAGCGCTTTCCCCAC
** * *
77789536 AAACACCACTAAAGAACATGACTTTTAGTGGCGCTTTTCCCAC
1 AAACACTGCTAAAGAACATGACTTTTAGTAGCGCTTTCCCCAC
**
77789579 AAACGTTGCTAAAG
1 AAACACTGCTAAAG
77789593 GTCATGTTCT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
AAACACTGCTAAAGAACATGACTTTTAGTAGCGCTTTCCCCAC
Found at i:77792322 original size:21 final size:21
Alignment explanation
Indices: 77792296--77792351 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
77792286 TGTTTTAAGG
* *
77792296 CCACACGGGTGTGTCCCTGGA
1 CCACACGGGCGTGTCCCTAGA
77792317 CCACACGGGCGTGTCCCTAGA
1 CCACACGGGCGTGTCCCTAGA
77792338 CCACACGGGCGTGT
1 CCACACGGGCGTGT
77792352 GTGCCTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (21 bp):
CCACACGGGCGTGTCCCTAGA
Found at i:77799128 original size:45 final size:45
Alignment explanation
Indices: 77799023--77799242 Score: 261
Period size: 45 Copynumber: 5.0 Consensus size: 45
77799013 CTGAATTCAT
* * * *
77799023 TCACCGGTATT-TTGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
*
77799065 TCACCGGTATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* **
77799110 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCTTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
77799155 TCACTGGCATTATAGCCTTCTAGGCTCAAAGGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
77799200 TCACCGGAATTATAGCCTGCTATGCTCAAAGGCCTGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
77799243 CCGTGCGATA
Statistics
Matches: 156, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
42 11 0.07
43 14 0.09
44 10 0.06
45 120 0.77
46 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:77800087 original size:47 final size:46
Alignment explanation
Indices: 77800034--77800172 Score: 206
Period size: 47 Copynumber: 3.0 Consensus size: 46
77800024 ATTTTCTTTC
* *
77800034 ACTAAGTAACTTATCCGGAAATAATAAGGGAAAATTTAACAAGCTTA
1 ACTAAGTAACTTATCCGAAAATATTAAGGG-AAATTTAACAAGCTTA
*
77800081 ACTAAGTAACTAATCCGAAAATATTAAGGGCAAATTTAACAAGCTTA
1 ACTAAGTAACTTATCCGAAAATATTAAGGG-AAATTTAACAAGCTTA
* * *
77800128 ACTAAGTCACTTATCCGAAAATATTAAGAGCAATTTAACAAGCTT
1 ACTAAGTAACTTATCCGAAAATATTAAGGGAAATTTAACAAGCTT
77800173 TAAATTCAAC
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
46 14 0.17
47 70 0.83
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.27
Consensus pattern (46 bp):
ACTAAGTAACTTATCCGAAAATATTAAGGGAAATTTAACAAGCTTA
Found at i:77806569 original size:45 final size:45
Alignment explanation
Indices: 77806457--77806630 Score: 207
Period size: 45 Copynumber: 4.0 Consensus size: 45
77806447 CTGAATTCAT
* * * *
77806457 TCACCAGTATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
77806499 TCACCGGCATTATA-CCTGCTAGGCTCGAAA-GTCCGAATAGTATC
1 TCACCAGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
77806543 TCACCAGTAGTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
77806588 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
77806631 CTGTGCGATA
Statistics
Matches: 113, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
42 21 0.19
43 7 0.06
44 19 0.17
45 66 0.58
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:77806595 original size:89 final size:87
Alignment explanation
Indices: 77806457--77806630 Score: 237
Period size: 90 Copynumber: 2.0 Consensus size: 87
77806447 CTGAATTCAT
* * * *
77806457 TCACCAGTATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTTCACCGGCATTATA-CCTGCTAG
1 TCACCAGTATATAGCCTGCTAGGCTCAAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAG
*
77806521 GCTCGAAA-GTCCGAATAGTATC
66 GCTC-AAAGGCCCGAATAGTATC
77806543 TCACCAGTAGTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATAGCCTG
1 TCACCAGTA-TATAGCCTGCTAGGCTCAAA-GCCCG-ATA-TCATCTCACCGGCATTATAGCCTG
77806607 CTAGGCTCAAAGGCCCGAATAGTA
62 CTAGGCTCAAAGGCCCGAATAGTA
77806631 CTGTGCGATA
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
86 9 0.12
87 17 0.22
88 5 0.06
89 22 0.29
90 24 0.31
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (87 bp):
TCACCAGTATATAGCCTGCTAGGCTCAAAGCCCGATATCATCTCACCGGCATTATAGCCTGCTAG
GCTCAAAGGCCCGAATAGTATC
Found at i:77807490 original size:47 final size:46
Alignment explanation
Indices: 77807434--77807575 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 46
77807424 AAAATTTTCT
* *
77807434 TTAACTAAGTAACTTATCCTGAAATAATAAGGGCAAATTTAATAAGC
1 TTAACTAAGTAACTTATCC-GAAATATTAAGGGCAAATTTAACAAGC
* *
77807481 TTAACTAAGTAACTTATCCGAAAATATTAAGGGAAAAATTAACAAGC
1 TTAACTAAGTAACTTATCCG-AAATATTAAGGGCAAATTTAACAAGC
*
77807528 TTAACTAAGTAACTTATCCGGAAATATTAAGAGC-AATTTAACAAGC
1 TTAACTAAGTAACTTATCC-GAAATATTAAGGGCAAATTTAACAAGC
77807574 TT
1 TT
77807576 TAAATTCAAC
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
46 14 0.16
47 71 0.83
48 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (46 bp):
TTAACTAAGTAACTTATCCGAAATATTAAGGGCAAATTTAACAAGC
Found at i:77808675 original size:21 final size:21
Alignment explanation
Indices: 77808649--77808695 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
77808639 TTAATTTCGT
77808649 ATGTTAATATGTTTTAATTGA
1 ATGTTAATATGTTTTAATTGA
77808670 ATGTTAATATGTTTTAATTGA
1 ATGTTAATATGTTTTAATTGA
77808691 ATGTT
1 ATGTT
77808696 GTATTTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (21 bp):
ATGTTAATATGTTTTAATTGA
Found at i:77809635 original size:29 final size:28
Alignment explanation
Indices: 77809602--77809656 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
77809592 ATAGGGGTTT
77809602 TCACACGGCCA-GACACATGCCCGTGTCCC
1 TCACACGGCCACGACAC--GCCCGTGTCCC
77809631 TCACACGGCCACGACACGCCCGTGTC
1 TCACACGGCCACGACACGCCCGTGTC
77809657 TTAGCTCGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 9 0.36
29 11 0.44
30 5 0.20
ACGTcount: A:0.20, C:0.45, G:0.22, T:0.13
Consensus pattern (28 bp):
TCACACGGCCACGACACGCCCGTGTCCC
Found at i:77813385 original size:28 final size:28
Alignment explanation
Indices: 77813354--77813485 Score: 139
Period size: 28 Copynumber: 4.7 Consensus size: 28
77813344 CATACATGCG
77813354 TATGGCCCACTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCTCATTTA
77813382 TATGGCCCATCT-GGCCCAAT-TCATGTTCA
1 TATGGCCCA-CTAGGCCCAATCTCAT-TT-A
* *
77813411 T-TGGCCCA-TCAGGCCCAATTCACATTCA
1 TATGGCCCACT-AGGCCCAA-TCTCATTTA
*
77813439 TATGGCCCATTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCTCATTTA
*
77813467 TGTGGCCCATCTA-GCCCAA
1 TATGGCCCA-CTAGGCCCAA
77813486 ATCACATGAT
Statistics
Matches: 88, Mismatches: 6, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
26 1 0.01
27 4 0.05
28 56 0.64
29 23 0.26
30 4 0.05
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCTCATTTA
Found at i:77813455 original size:57 final size:57
Alignment explanation
Indices: 77813356--77813492 Score: 169
Period size: 57 Copynumber: 2.4 Consensus size: 57
77813346 TACATGCGTA
* *
77813356 TGGCCCA-CTAGGCCCAATCTCATTTATATGGCCCATCTGGCCCAAT-TCATGTTCAT-
1 TGGCCCATCTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAATCTCAT-TT-ATG
77813412 TGGCCCATC-AGGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAATCTCATTTATG
1 TGGCCCATCTAGGCCCAA-TCACATTCATATGGCCCATCT-GGCCCAATCTCATTTATG
77813469 TGGCCCATCTA-GCCCAAATCACAT
1 TGGCCCATCTAGGCCC-AATCACAT
77813493 GATATTCATG
Statistics
Matches: 72, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
56 18 0.25
57 47 0.65
58 7 0.10
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (57 bp):
TGGCCCATCTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAATCTCATTTATG
Found at i:77816503 original size:46 final size:46
Alignment explanation
Indices: 77816413--77816631 Score: 124
Period size: 46 Copynumber: 4.7 Consensus size: 46
77816403 CGGGTAAGGT
77816413 GCCAATGCCAT-TCCCAGACATGGTCTTACACTAACTATCATCTCGTA-
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAACTATCATCTCG-AG
** ** *
77816460 GTTAATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCAATGCATGTCCCAGACATGTCTTACACTAACTAT-CATCTCGAG
* * * * * * *
77816506 GCCGATGTATGTCCCAGGCATGTCTTACACTAGC-ACTCATATTGAT
1 GCCAATGCATGTCCCAGACATGTCTTACACTAACTA-TCATCTCGAG
* * * ** * * *
77816552 GCCGATGTCATGTCCCAAATATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAACTATCAT-CTCGAG
* * *
77816600 GTCGATGCATGTCCCATACATGTCTTACACTA
1 GCCAATGCATGTCCCAGACATGTCTTACACTA
77816632 GCTCACAATA
Statistics
Matches: 136, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.01
46 71 0.52
47 38 0.28
48 23 0.17
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (46 bp):
GCCAATGCATGTCCCAGACATGTCTTACACTAACTATCATCTCGAG
Found at i:77816582 original size:48 final size:47
Alignment explanation
Indices: 77816505--77816633 Score: 147
Period size: 48 Copynumber: 2.8 Consensus size: 47
77816495 TACGTCTCGA
** *
77816505 GGCCGATGT-ATGTCCCAGGCATGTCTTACACTAGCACTCATATTGAT
1 GGCCGATGTCATGTCCCAAACATGTCTTACACTAGCACTCATAATG-T
* * *
77816552 -GCCGATGTCATGTCCCAAATATGGTCTTACACTGGCTCTCATAATGT
1 GGCCGATGTCATGTCCCAAACAT-GTCTTACACTAGCACTCATAATGT
* *
77816599 GGTCGATG-CATGTCCCATACATGTCTTACACTAGC
1 GGCCGATGTCATGTCCCAAACATGTCTTACACTAGC
77816634 TCACAATAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
46 20 0.29
47 23 0.33
48 26 0.38
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
GGCCGATGTCATGTCCCAAACATGTCTTACACTAGCACTCATAATGT
Found at i:77818621 original size:24 final size:24
Alignment explanation
Indices: 77818580--77818627 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
77818570 AGAACAAAAT
*
77818580 CAAAAAAAAGAAAGAAAGCAATTCG
1 CAAAAAAAAG-AAGAAAGAAATTCG
77818605 CAAAAAAAAG-AGCAAAGAAATTC
1 CAAAAAAAAGAAG-AAAGAAATTC
77818628 AAAAAGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 9 0.43
25 10 0.48
ACGTcount: A:0.65, C:0.12, G:0.15, T:0.08
Consensus pattern (24 bp):
CAAAAAAAAGAAGAAAGAAATTCG
Found at i:77819395 original size:28 final size:29
Alignment explanation
Indices: 77819364--77819423 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
77819354 TTAGTTATTT
77819364 TTACTATT-TTATTATTAAAATTAAT-TAA
1 TTACTATTATTA-TATTAAAATTAATATAA
**
77819392 TTACTATTATTATATTATTATTAATATAA
1 TTACTATTATTATATTAAAATTAATATAA
77819421 TTA
1 TTA
77819424 TTGTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (29 bp):
TTACTATTATTATATTAAAATTAATATAA
Found at i:77819634 original size:3 final size:3
Alignment explanation
Indices: 77819626--77819690 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
77819616 CAAAATTTCA
*
77819626 TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
77819674 TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
77819691 CTTTTAAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:77819805 original size:4 final size:4
Alignment explanation
Indices: 77819784--77819839 Score: 62
Period size: 4 Copynumber: 14.0 Consensus size: 4
77819774 TTTTTTTTTG
*
77819784 TTAT TTCAT TTA- TTAT TTAT TTA- TTAT TCTAT TTAT TTAT TTAT TGAT
1 TTAT TT-AT TTAT TTAT TTAT TTAT TTAT T-TAT TTAT TTAT TTAT TTAT
*
77819832 TCAT TTAT
1 TTAT TTAT
77819840 GTCTTTATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
3 6 0.13
4 31 0.69
5 8 0.18
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (4 bp):
TTAT
Found at i:77819819 original size:20 final size:20
Alignment explanation
Indices: 77819796--77819839 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
77819786 ATTTCATTTA
77819796 TTATTTATTTATT-ATTCTAT
1 TTATTTATTTATTGATTC-AT
77819816 TTATTTATTTATTGATTCAT
1 TTATTTATTTATTGATTCAT
77819836 TTAT
1 TTAT
77819840 GTCTTTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTATTTATTGATTCAT
Found at i:77837138 original size:13 final size:13
Alignment explanation
Indices: 77837120--77837146 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77837110 TTAAATTATA
77837120 TGTGTGAAAATTT
1 TGTGTGAAAATTT
77837133 TGTGTGAAAATTT
1 TGTGTGAAAATTT
77837146 T
1 T
77837147 AGCATTTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:77838318 original size:44 final size:45
Alignment explanation
Indices: 77838256--77838418 Score: 151
Period size: 44 Copynumber: 3.7 Consensus size: 45
77838246 CGATATGTGA
*
77838256 TTTCGTGTAAGACGACGTCTGGGA-AGTTGGCAACGATTTGAGAT
1 TTTCGTGTAAGACCACGTCTGGGACAGTTGGCAACGATTTGAGAT
* * *
77838300 TTTCTTGTAAGACCACGTCTGAGACA-ATGGCAACGATTTGAGAT
1 TTTCGTGTAAGACCACGTCTGGGACAGTTGGCAACGATTTGAGAT
* * * *
77838344 TTACGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATT-CGAT
1 TTTCGTGTAAGACCAC-GTCTGGGACAGTTGGCAACGAT-TTGAGAT
* * * *
77838388 TAT-ATTTAAGACCATGTCTGGGAC-GTTGGCA
1 TTTCGTGTAAGACCACGTCTGGGACAGTTGGCA
77838419 TTGTACGAGC
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
42 1 0.01
43 22 0.23
44 71 0.73
45 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (45 bp):
TTTCGTGTAAGACCACGTCTGGGACAGTTGGCAACGATTTGAGAT
Found at i:77841202 original size:27 final size:27
Alignment explanation
Indices: 77841164--77841309 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
77841154 TGGATAAGTT
77841164 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
77841191 GTAGAATTACCGAAATACCCCAGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
77841218 ATAGAATTACCAAAATA-CCCTAGTAGG
1 GTAGAATTACCGAAATACCCCT-GTAGG
*
77841245 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
77841272 GTTGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
77841299 GTAAAATTACC
1 GTAGAATTACC
77841310 ATTTTGCCCC
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.03
27 96 0.93
28 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:77843388 original size:46 final size:46
Alignment explanation
Indices: 77843321--77843449 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
77843311 AATGCCATAT
* *
77843321 ATATATCTAATATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
77843367 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
*
77843413 ATATATCTGATATGGACTTACATGGCTCATTTCTGTC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTC
77843450 CTGTCCTGTC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.35
Consensus pattern (46 bp):
ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
Found at i:77843819 original size:30 final size:30
Alignment explanation
Indices: 77843785--77843845 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
77843775 TCCTTTACTC
*
77843785 AAAC-TTTGCAAAAATTACATTTTTGCCCCT
1 AAACTTTTGCAAAAA-TACACTTTTGCCCCT
* *
77843815 AAACTTTTGCATATATACACTTTTGCCCCT
1 AAACTTTTGCAAAAATACACTTTTGCCCCT
77843845 A
1 A
77843846 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAAATACACTTTTGCCCCT
Found at i:77848537 original size:19 final size:19
Alignment explanation
Indices: 77848513--77848550 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
77848503 TAGGCCATGT
77848513 TGGGCCTAGATGGGC-CGTG
1 TGGGCCTAG-TGGGCTCGTG
77848532 TGGGCCTAGTGGGCTCGTG
1 TGGGCCTAGTGGGCTCGTG
77848551 GGCCCCACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.08, C:0.21, G:0.47, T:0.24
Consensus pattern (19 bp):
TGGGCCTAGTGGGCTCGTG
Found at i:77849147 original size:32 final size:32
Alignment explanation
Indices: 77849098--77849160 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
77849088 CATATGGGTC
* *
77849098 TGATTCTGATATGGGCTAGGCCCAACTAATAT
1 TGATTCTGAGATAGGCTAGGCCCAACTAATAT
*
77849130 TGATTCTGAGATAGGCTAGGCCCAATTAATA
1 TGATTCTGAGATAGGCTAGGCCCAACTAATA
77849161 CTGTGATGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (32 bp):
TGATTCTGAGATAGGCTAGGCCCAACTAATAT
Found at i:77858606 original size:40 final size:40
Alignment explanation
Indices: 77858551--77858817 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
77858541 AACATTGGAT
77858551 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77858591 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77858631 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
77858671 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
77858711 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77858751 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
77858791 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
77858818 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:77867434 original size:40 final size:40
Alignment explanation
Indices: 77867363--77867668 Score: 551
Period size: 40 Copynumber: 7.7 Consensus size: 40
77867353 AACATTGGAT
77867363 TATATCCGGGCTAAGA-CCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77867402 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77867442 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77867482 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
77867522 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
77867562 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
77867602 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
77867642 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
77867669 ATGTGTTTGC
Statistics
Matches: 256, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
39 16 0.06
40 240 0.94
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:77871580 original size:41 final size:40
Alignment explanation
Indices: 77871410--77871676 Score: 393
Period size: 40 Copynumber: 6.7 Consensus size: 40
77871400 GCAAACACAT
* *
77871410 TTGCCTTCGGGTCTTAACCCGGACATATC-ACTCGCAATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGC-ATAA
77871450 TTGCCTTC-GG-CTTAGCCCGGGGATATATC-AC-CGCATAA
1 TTGCCTTCGGGTCTTAGCCC--GGATATATCAACTCGCATAA
* *
77871488 TTGCCTCCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77871528 TTGCCTTCGGGTCTTAG-CCGGATATGTCAAACTCGCAGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATC-AACTCGCA-TAA
77871569 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77871609 TTGCCTTCGGGTCTTAAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTT-AGCCCGGATATATCAACTCGCATAA
77871650 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
77871677 ATCCAATGTT
Statistics
Matches: 209, Mismatches: 8, Indels: 20
0.88 0.03 0.08
Matches are distributed among these distances:
38 27 0.13
39 19 0.09
40 85 0.41
41 68 0.33
42 10 0.05
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:77871588 original size:81 final size:80
Alignment explanation
Indices: 77871410--77871676 Score: 393
Period size: 81 Copynumber: 3.3 Consensus size: 80
77871400 GCAAACACAT
* *
77871410 TTGCCTTCGGGTCTTAACCCGGACATATC-ACTCGCAATAATTGCCTTC-GG-CTTAGCCCGGGG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGC-ATAATTGCCTTCGGGTCTTAGCCC--GG
77871472 ATATATC-AC-CGCATAA
63 ATATATCAACTCGCATAA
* *
77871488 TTGCCTCCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAG-CCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
77871552 TGTCAAACTCGCAGTAA
66 TATC-AACTCGCA-TAA
77871569 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAAGCCCGGAT
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTT-AGCCCGGAT
77871634 ATATCAACTCGCATAA
65 ATATCAACTCGCATAA
77871650 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
77871677 ATCCAATGTT
Statistics
Matches: 172, Mismatches: 8, Indels: 15
0.88 0.04 0.08
Matches are distributed among these distances:
77 8 0.05
78 37 0.22
79 12 0.07
80 9 0.05
81 86 0.50
82 10 0.06
83 10 0.06
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAA
Found at i:77880190 original size:40 final size:40
Alignment explanation
Indices: 77880145--77880408 Score: 437
Period size: 40 Copynumber: 6.7 Consensus size: 40
77880135 CGCAAAACAT
* *
77880145 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
77880185 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
77880225 TTGCC-TC-GGTCATAG-CCGGA-ATAATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCATAA
*
77880262 TTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77880302 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77880342 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
77880382 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
77880409 ATCCAATGTT
Statistics
Matches: 209, Mismatches: 10, Indels: 10
0.91 0.04 0.04
Matches are distributed among these distances:
36 2 0.01
37 22 0.11
38 9 0.04
39 9 0.04
40 165 0.79
41 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:77887320 original size:25 final size:26
Alignment explanation
Indices: 77887274--77887324 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
77887264 TAAATTAGTG
*
77887274 CTAATTAACCTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
77887300 CTAATTAAACT-AAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
77887325 TTATTTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:77889985 original size:26 final size:26
Alignment explanation
Indices: 77889955--77890006 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
77889945 AAAATTAATG
77889955 CTAATTAAACTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
*
77889981 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
77890007 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:77892018 original size:6 final size:6
Alignment explanation
Indices: 77891998--77892036 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
77891988 TAAATAAGAT
* *
77891998 AAATAA AGATAA AAATGA AAATAA AAATAA TAAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AA
77892037 TTTTTTTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:77897353 original size:40 final size:40
Alignment explanation
Indices: 77897307--77897382 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
77897297 TGGCTAAGAA
*
77897307 TGGCACTTAGTGTGCGGTTTGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
* *
77897347 TGGCACTTGGTGTGCGATTTGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTA
77897383 TATATATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGAAATAGCTTCGGCTAAATG
Found at i:77897430 original size:28 final size:29
Alignment explanation
Indices: 77897399--77897467 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
77897389 TATGTGTGGC
77897399 ACTTAGTGTGCGAA-ATATTGAGAATGGA
1 ACTTAGTGTGCGAAGATATTGAGAATGGA
* * * *
77897427 ACTTGGTGTTC-AAGATATTGAGTATGGC
1 ACTTAGTGTGCGAAGATATTGAGAATGGA
77897455 ACTTAGTGTGCGA
1 ACTTAGTGTGCGA
77897468 GACATCGAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
27 2 0.06
28 30 0.91
29 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.29, T:0.32
Consensus pattern (29 bp):
ACTTAGTGTGCGAAGATATTGAGAATGGA
Found at i:77908802 original size:68 final size:67
Alignment explanation
Indices: 77908730--77908879 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
77908720 CATCATGTGT
* * * *
77908730 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
77908792 ATGTAG
62 ATGTAG
** * *
77908798 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
77908863 AG
66 AG
77908865 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
77908880 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:77908835 original size:64 final size:64
Alignment explanation
Indices: 77908754--77908937 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
77908744 AGACATTATG
* *
77908754 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
77908818 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
77908883 AA
63 AA
* * * * *
77908885 ACTG--GCTAAGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
77908938 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:77916026 original size:21 final size:22
Alignment explanation
Indices: 77915962--77916026 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 22
77915952 AGTTACACGG
*
77915962 CTTGTTCC-CACGGCCATGT-C
1 CTTGGTCCACACGGCCATGTGC
*
77915982 CCTGGTCCACACGTG-CATGTGC
1 CTTGGTCCACACG-GCCATGTGC
77916004 CTTGGT-CACACGGCCATGTGC
1 CTTGGTCCACACGGCCATGTGC
77916025 CT
1 CT
77916027 CTCTTCACAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.18
21 24 0.63
22 7 0.18
ACGTcount: A:0.12, C:0.37, G:0.25, T:0.26
Consensus pattern (22 bp):
CTTGGTCCACACGGCCATGTGC
Done.