Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 230 of 362
Found at i:77917171 original size:72 final size:72
Alignment explanation
Indices: 77917054--77917200 Score: 276
Period size: 72 Copynumber: 2.0 Consensus size: 72
77917044 AATTTTGGTT
*
77917054 TTATTTGGATTTTTAATTCATTTAATTACCAAATGACCAAAATGTCATTTTCTTAAAACACTAAA
1 TTATTTGGATTTTTAATTCATGTAATTACCAAATGACCAAAATGTCATTTTCTTAAAACACTAAA
77917119 ATTTCTC
66 ATTTCTC
*
77917126 TTATTTGGCTTTTTAATTCATGTAATTACCAAATGACCAAAATGTCATTTTCTTAAAACACTAAA
1 TTATTTGGATTTTTAATTCATGTAATTACCAAATGACCAAAATGTCATTTTCTTAAAACACTAAA
77917191 ATTTCTC
66 ATTTCTC
77917198 TTA
1 TTA
77917201 CTCCAAGTCC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.43
Consensus pattern (72 bp):
TTATTTGGATTTTTAATTCATGTAATTACCAAATGACCAAAATGTCATTTTCTTAAAACACTAAA
ATTTCTC
Found at i:77927298 original size:47 final size:47
Alignment explanation
Indices: 77927244--77927532 Score: 389
Period size: 47 Copynumber: 6.1 Consensus size: 47
77927234 TTAGGGTTTT
** * *
77927244 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
77927291 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
** *
77927342 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
77927389 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
77927436 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATAGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
77927483 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
77927530 ATG
1 ATG
77927533 CGAAATGTGT
Statistics
Matches: 219, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 172 0.79
49 11 0.05
51 36 0.16
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:77927369 original size:23 final size:23
Alignment explanation
Indices: 77927342--77927416 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
77927332 CGAATGGCCG
77927342 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
77927365 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
77927389 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
77927412 ATGTG
1 ATGTG
77927417 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:77927568 original size:46 final size:46
Alignment explanation
Indices: 77927506--77927640 Score: 191
Period size: 46 Copynumber: 3.0 Consensus size: 46
77927496 GAACATGTAT
*
77927506 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
* * *
77927552 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
* * * *
77927598 ATATGTGGTAAAGCCAAATGGCT-ATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGAT
77927641 GTGTATATAT
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 16 0.20
46 63 0.80
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
Found at i:77930412 original size:27 final size:27
Alignment explanation
Indices: 77930374--77930432 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
77930364 CCATTAGCCA
*
77930374 TCAAAATACACACATGTCTAACATGGG
1 TCAAAATACACACATGTCTAACATCGG
77930401 TCAAAATACACACATGTCTAACATCGG
1 TCAAAATACACACATGTCTAACATCGG
77930428 TCAAA
1 TCAAA
77930433 CCCTAGACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.22
Consensus pattern (27 bp):
TCAAAATACACACATGTCTAACATCGG
Found at i:77932258 original size:58 final size:60
Alignment explanation
Indices: 77932188--77932319 Score: 196
Period size: 61 Copynumber: 2.2 Consensus size: 60
77932178 ATCACTTTAA
* *
77932188 TATTAAATTAATACAATACTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATACAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAAAC
* *
77932246 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAATATTAAAAC
1 TATTAAATTAATACAATACTTA-CTACAAGATAAATATTAAATTAAATTTAATATTAAAAC
*
77932307 TATTAAAATAATA
1 TATTAAATTAATA
77932320 TTATTTTTGG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
58 20 0.30
60 1 0.02
61 45 0.68
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (60 bp):
TATTAAATTAATACAATACTTACTACAAGATAAATATTAAATTAAATTTAATATTAAAAC
Found at i:77932727 original size:15 final size:15
Alignment explanation
Indices: 77932707--77932752 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
77932697 CATGTGTTTC
77932707 ATTTATTTATTTTAA
1 ATTTATTTATTTTAA
*
77932722 ATTTA-TTATTTGTTA
1 ATTTATTTATTT-TAA
*
77932737 AGTT-TTTATTTTAA
1 ATTTATTTATTTTAA
77932751 AT
1 AT
77932753 GGATTTTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (15 bp):
ATTTATTTATTTTAA
Found at i:77935152 original size:18 final size:18
Alignment explanation
Indices: 77935129--77935165 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
77935119 TAGATGGAGT
77935129 GCCAAGATTCTAAAGAGG
1 GCCAAGATTCTAAAGAGG
77935147 GCCAAGATTCTAAAGAGG
1 GCCAAGATTCTAAAGAGG
77935165 G
1 G
77935166 GCAATGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.30, T:0.16
Consensus pattern (18 bp):
GCCAAGATTCTAAAGAGG
Found at i:77935424 original size:19 final size:20
Alignment explanation
Indices: 77935386--77935427 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
77935376 AGTCCATTCA
**
77935386 TTGGGTTGTTCTTATTTATT
1 TTGGGTTGTAATTATTTATT
77935406 TTGGGTTGTAATT-TTTATT
1 TTGGGTTGTAATTATTTATT
77935425 TTG
1 TTG
77935428 TTTTCTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.12, C:0.02, G:0.21, T:0.64
Consensus pattern (20 bp):
TTGGGTTGTAATTATTTATT
Found at i:77935752 original size:26 final size:26
Alignment explanation
Indices: 77935702--77935756 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
77935692 TCCAAGATCT
* *
77935702 AAAAATTCTTTGATTTCTCTTTTTAA
1 AAAAATTATTTGATTTCTCTCTTTAA
77935728 AAAAATTATTTGATTTC-CTCCTTTAA
1 AAAAATTATTTGATTTCTCT-CTTTAA
77935754 AAA
1 AAA
77935757 TTGGCCCCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (26 bp):
AAAAATTATTTGATTTCTCTCTTTAA
Found at i:77938532 original size:27 final size:27
Alignment explanation
Indices: 77938484--77938642 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
77938474 GTGAGGCTGC
* *
77938484 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
77938511 CAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
77938537 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
77938564 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
77938591 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
77938618 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
77938643 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:77938643 original size:54 final size:54
Alignment explanation
Indices: 77938502--77938645 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
77938492 GTGACGAAGT
* * *
77938502 CACCAGATACAGAT-ATTGTGGTAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
77938556 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
77938610 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
77938646 GCTTCCTCTA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:77942589 original size:27 final size:27
Alignment explanation
Indices: 77942541--77942645 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
77942531 GCGAGGCTGC
* *
77942541 CAGATATTGTGAC-GAAGTCACCAGAATA
1 CAGATATTGTGGCAG-AGCCACCAG-ATA
77942569 CAG-TATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
77942594 CAGATATAAGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
77942621 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
77942646 GACGCTTCCT
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
25 4 0.06
26 4 0.06
27 51 0.78
28 6 0.09
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:77943049 original size:8 final size:8
Alignment explanation
Indices: 77943033--77943062 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
77943023 CTCAAAATAC
77943033 CGGCTTTT
1 CGGCTTTT
*
77943041 CGGCATTT
1 CGGCTTTT
77943049 CGGCTTTT
1 CGGCTTTT
77943057 CGGCTT
1 CGGCTT
77943063 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:77949543 original size:27 final size:27
Alignment explanation
Indices: 77949495--77949599 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
77949485 GCGAGGCTGC
* * *
77949495 CAGATATTGTGAC-GAAGTCACCAAATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
77949522 CAGGTATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
77949548 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
77949575 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
77949600 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 7 0.10
27 58 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:77950005 original size:8 final size:8
Alignment explanation
Indices: 77949989--77950018 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
77949979 CTCAAAATAC
77949989 CGGCTTTT
1 CGGCTTTT
*
77949997 CGGCATTT
1 CGGCTTTT
77950005 CGGCTTTT
1 CGGCTTTT
77950013 CGGCTT
1 CGGCTT
77950019 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:77953373 original size:43 final size:42
Alignment explanation
Indices: 77953326--77953451 Score: 116
Period size: 43 Copynumber: 3.0 Consensus size: 42
77953316 ATGTGTTCTC
77953326 GTGTAAGACCACGTCTGGGTCATTGGCATCGATATGTTATTA
1 GTGTAAGACCACGTCTGGGTCATTGGCATCGATATGTTATTA
* * * * *
77953368 TGTGTAAAACCATGTCTGGGACATCGGCATTG-TAT-TTGATTA
1 -GTGTAAGACCACGTCTGGGTCATTGGCATCGATATGTT-ATTA
* * *
77953410 GTGTAAGACC-CTGTTTGGGAT-AGTGGCATCGATATGTGATTA
1 GTGTAAGACCAC-GTCTGGG-TCATTGGCATCGATATGTTATTA
77953452 CATGTAAAAC
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
41 24 0.37
42 14 0.22
43 27 0.42
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGTCATTGGCATCGATATGTTATTA
Found at i:77955899 original size:18 final size:19
Alignment explanation
Indices: 77955865--77955908 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
77955855 GATACTAATT
77955865 ATATATGATGTAAATGAAA
1 ATATATGATGTAAATGAAA
*
77955884 ATATATG-TGTATATGAAA
1 ATATATGATGTAAATGAAA
77955902 ATTATAT
1 A-TATAT
77955909 TCTGCCAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (19 bp):
ATATATGATGTAAATGAAA
Found at i:77963197 original size:48 final size:48
Alignment explanation
Indices: 77963133--77963413 Score: 508
Period size: 48 Copynumber: 5.9 Consensus size: 48
77963123 TATATATGTG
* *
77963133 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
77963181 TGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
77963229 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
77963277 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
77963325 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
77963373 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
77963414 GTGTGTATAT
Statistics
Matches: 227, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 227 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:77963604 original size:37 final size:37
Alignment explanation
Indices: 77963554--77963656 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
77963544 GGAAATATAT
77963554 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
77963591 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
77963628 TCCGGGGAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
77963657 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:77967518 original size:43 final size:43
Alignment explanation
Indices: 77967483--77967639 Score: 192
Period size: 43 Copynumber: 3.7 Consensus size: 43
77967473 TATGTCTTCT
*
77967483 CATGTAAGACCATGTCTGGGGCATTGGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
* * ** *
77967526 CGTGTAAGACCATGTCTGGGATATCAGCATCG-TATTTGATT-
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
* * * * *
77967567 CGTGTAACACCCTGTCTGAGACAATGGCATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
*
77967610 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CATGTAAGACCATGTCTGGGACATTGGCAT
77967640 TGTACGATAT
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
41 25 0.27
42 16 0.17
43 51 0.55
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTA
Found at i:77967843 original size:18 final size:19
Alignment explanation
Indices: 77967809--77967852 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
77967799 GATACTAATT
77967809 ATATATGATGTAAATGAAA
1 ATATATGATGTAAATGAAA
*
77967828 ATATATG-TGTATATGAAA
1 ATATATGATGTAAATGAAA
77967846 ATTATAT
1 A-TATAT
77967853 TCTGCCAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (19 bp):
ATATATGATGTAAATGAAA
Found at i:77971627 original size:41 final size:42
Alignment explanation
Indices: 77971579--77971729 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 42
77971569 CTGCCACGAA
* * *
77971579 GCCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATTTC
1 GCCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTTC
* *
77971620 GCCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TC
* * * * * * *
77971663 GCCCGCTAGGCCTGAAGCCTGATATTATCTCACCGGCATTATA
1 GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT-TC
* **
77971706 GCCTGCTAGGCCCGAAGCCCGATA
1 GCCTGCTAGACTTGAAGCCCGATA
77971730 ATATTATTCA
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
41 21 0.22
42 13 0.14
43 60 0.64
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (42 bp):
GCCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTTC
Found at i:77971679 original size:43 final size:43
Alignment explanation
Indices: 77971606--77971729 Score: 178
Period size: 43 Copynumber: 2.9 Consensus size: 43
77971596 TCTGAACTCA
* *
77971606 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* * *
77971648 TTCACCGGCATTATAGCCCGCTAGGCCTGAAGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
* *
77971691 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATA
77971730 ATATTATTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 12 0.17
43 60 0.83
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGATATCAT
Found at i:77976502 original size:46 final size:46
Alignment explanation
Indices: 77976452--77976624 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
77976442 TGGTTGAGCA
*
77976452 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
77976498 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
77976545 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
77976591 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
77976625 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.59
47 29 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:77976608 original size:93 final size:93
Alignment explanation
Indices: 77976449--77976619 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
77976439 GGATGGTTGA
***
77976449 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
77976514 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
77976542 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
77976607 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
77976620 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:77985023 original size:55 final size:53
Alignment explanation
Indices: 77984915--77985169 Score: 243
Period size: 55 Copynumber: 4.8 Consensus size: 53
77984905 ATTAGGGTTT
* * * **
77984915 AAGGATACCATGTAAGGCCATGCCAAGGCATGAAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATG-GCATTGGTAA-G-TTCATAAGGC
* * *
77984970 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
77985025 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
77985078 AAGGATACCATGTAAGACCATGTCAAAACATGGCAATGGTAAGTT-TTAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* * * *
77985127 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
77985170 GTACCCATGT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
52 9 0.05
53 43 0.25
54 8 0.05
55 66 0.39
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:77985121 original size:108 final size:110
Alignment explanation
Indices: 77984922--77985122 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
77984912 TTTAAGGATA
* *
77984922 CCATGTAAGGCCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
77984987 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAAACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
** * *
77985032 CCATGTAAGACCATGCCAAGGCATG-GCATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
77985094 ACCATGTCAAAACATGGCAATGGTAAGTT
65 ACCATGTCAAAACATGGCAATGATAAGTT
77985123 TTAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGAAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAAACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:77985159 original size:49 final size:51
Alignment explanation
Indices: 77984981--77985169 Score: 168
Period size: 53 Copynumber: 3.6 Consensus size: 51
77984971 AGGAAATCAT
* * * * *
77984981 GTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG-TCCCAT
1 GTAAGACCATGACAAGACATGGCAATGGTAAGTT-C-ATAA-G--AAGGATACCAC
* * * * *
77985036 GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCAT
1 GTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAA-G-AAGGATACCAC
* * *
77985089 GTAAGACCATGTCAAAACATGGCAATGGTAAGTT-TTAA-AAGGATACCAC
1 GTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAAGAAGGATACCAC
*
77985138 GTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GTAAGACCATGACAAGACATGGCAATGGTAAG
77985170 GTACCCATGT
Statistics
Matches: 117, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 39 0.33
52 7 0.06
53 40 0.34
54 1 0.01
55 30 0.26
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (51 bp):
GTAAGACCATGACAAGACATGGCAATGGTAAGTTCATAAGAAGGATACCAC
Found at i:77985264 original size:23 final size:24
Alignment explanation
Indices: 77985238--77985282 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
77985228 AAGGTAAGGT
*
77985238 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
77985261 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
77985283 GAAGAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:77985382 original size:16 final size:16
Alignment explanation
Indices: 77985361--77985391 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77985351 ATAAATTTGA
77985361 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77985377 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77985392 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77987807 original size:12 final size:13
Alignment explanation
Indices: 77987787--77987821 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
77987777 CCTATATTAA
77987787 ATTTATTATTTTT
1 ATTTATTATTTTT
77987800 ATTT-TTATTTTT
1 ATTTATTATTTTT
*
77987812 ATTTACTATT
1 ATTTATTATT
77987822 GCTCTTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTATTATTTTT
Found at i:77988842 original size:32 final size:32
Alignment explanation
Indices: 77988801--77988864 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
77988791 AAGAAGTAAG
77988801 ATTCAATCTCAGAATGGATTATGGTTCTTATT
1 ATTCAATCTCAGAATGGATTATGGTTCTTATT
77988833 ATTCAATCTCAGAATGGATTATGGTTCTTATT
1 ATTCAATCTCAGAATGGATTATGGTTCTTATT
77988865 CCCAATCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (32 bp):
ATTCAATCTCAGAATGGATTATGGTTCTTATT
Found at i:77996022 original size:14 final size:16
Alignment explanation
Indices: 77995987--77996023 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
77995977 CAAACGATGC
77995987 GATG-AAATGCTATGA
1 GATGCAAATGCTATGA
77996002 GATGCAAATGC-ATGA
1 GATGCAAATGCTATGA
77996017 -ATGCAAA
1 GATGCAAA
77996024 AAGGACATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 7 0.33
15 8 0.38
16 6 0.29
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (16 bp):
GATGCAAATGCTATGA
Found at i:78001327 original size:46 final size:46
Alignment explanation
Indices: 78001277--78001444 Score: 150
Period size: 46 Copynumber: 3.6 Consensus size: 46
78001267 TGGTTGAGCA
*
78001277 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
* * *
78001323 TCCGAACTCGTTGAGTTGAGTAC-GAG-T---TTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGT-CTGAGTTCACTTATG-GATGCAA--A--CG
* * *
78001370 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
* *
78001416 CCCGAGCTCGTTGAGTTGAGT-TCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCT-GAGTTC
78001445 GTTTATGGGC
Statistics
Matches: 98, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 51 0.52
47 25 0.26
48 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
Found at i:78001433 original size:93 final size:93
Alignment explanation
Indices: 78001274--78001443 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
78001264 GGATGGTTGA
* * * *
78001274 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
78001339 TGAGTACGAGTTTGTGAGATGTAACTAG
66 TGAGTACGAGTTTGTGAGATGTAACTAG
* *
78001367 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
*
78001432 TGAGTTCGAGTT
66 TGAGTACGAGTT
78001444 CGTTTATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTACGAGTTTGTGAGATGTAACTAG
Found at i:78003267 original size:28 final size:28
Alignment explanation
Indices: 78003227--78003300 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
78003217 GTTCAAATTG
* *
78003227 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
78003255 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
78003283 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
78003301 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:78006918 original size:25 final size:25
Alignment explanation
Indices: 78006884--78006935 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
78006874 CGCGAAGTCC
*
78006884 TAGCATTGATTATGAAAAGATATAA
1 TAGCATTGATTATAAAAAGATATAA
78006909 TAGCATTGATTATAAAAAGATATAA
1 TAGCATTGATTATAAAAAGATATAA
78006934 TA
1 TA
78006936 TTCTTTTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (25 bp):
TAGCATTGATTATAAAAAGATATAA
Found at i:78007022 original size:25 final size:25
Alignment explanation
Indices: 78006988--78007040 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
78006978 ACCCTAAACT
78006988 CAGCCTAGAAGTTTAGACCAAATCC
1 CAGCCTAGAAGTTTAGACCAAATCC
78007013 CAGCCTAGAAGTTTAGACCAAATCC
1 CAGCCTAGAAGTTTAGACCAAATCC
78007038 CAG
1 CAG
78007041 ATGTTACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.28, G:0.17, T:0.19
Consensus pattern (25 bp):
CAGCCTAGAAGTTTAGACCAAATCC
Found at i:78008289 original size:21 final size:21
Alignment explanation
Indices: 78008214--78008292 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
78008204 TGTGAAGAGG
* *
78008214 GGCACACGGCCATGTGACTGA
1 GGCACACGACCGTGTGACTGA
* **
78008235 GGCATAC-ATCCGTGTGAAAGGA
1 GGCACACGA-CCGTGTG-ACTGA
78008257 GGCACAC-ACCGTGTGACTGA
1 GGCACACGACCGTGTGACTGA
*
78008277 GGCACACGCCCGTGTG
1 GGCACACGACCGTGTG
78008293 GGCCAGGGAC
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 10 0.22
21 26 0.57
22 10 0.22
ACGTcount: A:0.24, C:0.28, G:0.33, T:0.15
Consensus pattern (21 bp):
GGCACACGACCGTGTGACTGA
Found at i:78008290 original size:42 final size:43
Alignment explanation
Indices: 78008204--78008292 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 43
78008194 CAAAAGTCCA
* * *
78008204 TGTGAAGAGGGGCACACGGCCATGTGACTGAGGCATACATCCG
1 TGTGAAGAGGGGCACACGACCATGTGACTGAGGCACACACCCG
* *
78008247 TGTGAA-AGGAGGCACAC-ACCGTGTGACTGAGGCACACGCCCG
1 TGTGAAGAGG-GGCACACGACCATGTGACTGAGGCACACACCCG
78008289 TGTG
1 TGTG
78008293 GGCCAGGGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 27 0.68
43 13 0.32
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.16
Consensus pattern (43 bp):
TGTGAAGAGGGGCACACGACCATGTGACTGAGGCACACACCCG
Found at i:78012725 original size:166 final size:166
Alignment explanation
Indices: 78012451--78012784 Score: 641
Period size: 166 Copynumber: 2.0 Consensus size: 166
78012441 TGAATAAAAC
78012451 CAACATTAATGCAAACATGAAGCTTGACCCCGCTCCATTCCCATTCATAATCCAACCACAAGTAG
1 CAACATTAATGCAAACATGAAGCTTGACCCCGCTCCATTCCCATTCATAATCCAACCACAAGTAG
* *
78012516 TCATGCCACTATTTCAATTGTTTACGTCGTCTAACGTTGAAGGAAAAATGTAAGACTGTAATTCT
66 TCATACCACTATTTCAATTGTTTACATCGTCTAACGTTGAAGGAAAAATGTAAGACTGTAATTCT
78012581 AGATGTCTAACAACAAGCCATCTTTGTTAGAAGAAG
131 AGATGTCTAACAACAAGCCATCTTTGTTAGAAGAAG
78012617 CAACATTAATGCAAACATGAAGCTTGACCCCGCTCCATTCCCATTCATAATCCAACCACAAGTAG
1 CAACATTAATGCAAACATGAAGCTTGACCCCGCTCCATTCCCATTCATAATCCAACCACAAGTAG
*
78012682 TCATACTACTATTTCAATTGTTTACATCGTCTAACGTTGAAGGAAAAATGTAAGACTGTAATTCT
66 TCATACCACTATTTCAATTGTTTACATCGTCTAACGTTGAAGGAAAAATGTAAGACTGTAATTCT
78012747 AGATGTCTAACAACAAGCCATCTTTGTTAGAAGAAG
131 AGATGTCTAACAACAAGCCATCTTTGTTAGAAGAAG
78012783 CA
1 CA
78012785 TTCCTACTGC
Statistics
Matches: 165, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 165 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (166 bp):
CAACATTAATGCAAACATGAAGCTTGACCCCGCTCCATTCCCATTCATAATCCAACCACAAGTAG
TCATACCACTATTTCAATTGTTTACATCGTCTAACGTTGAAGGAAAAATGTAAGACTGTAATTCT
AGATGTCTAACAACAAGCCATCTTTGTTAGAAGAAG
Found at i:78016969 original size:30 final size:27
Alignment explanation
Indices: 78016924--78017002 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 27
78016914 TCACATTTTC
78016924 AAAAAAATTTAAAATTTTGTAAAAAATGG
1 AAAAAAATTTAAAA-TTT-TAAAAAATGG
* * *
78016953 AAAAAAATATTTAAATTTTAGAAAATTG
1 AAAAAAAT-TTAAAATTTTAAAAAATGG
78016981 AAAAAAA-TTAAAA--TTAAAAAAT
1 AAAAAAATTTAAAATTTTAAAAAAT
78017003 ATATATTCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
24 8 0.18
26 5 0.11
28 15 0.34
29 11 0.25
30 5 0.11
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.30
Consensus pattern (27 bp):
AAAAAAATTTAAAATTTTAAAAAATGG
Found at i:78018180 original size:7 final size:7
Alignment explanation
Indices: 78018168--78018207 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
78018158 TGTTACAAAA
78018168 AAAATTC
1 AAAATTC
78018175 AAAATTC
1 AAAATTC
78018182 AAAATTC
1 AAAATTC
78018189 AAAATTC
1 AAAATTC
78018196 AAAATTC
1 AAAATTC
78018203 AAAAT
1 AAAAT
78018208 GGAAAATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATTC
Found at i:78018213 original size:21 final size:21
Alignment explanation
Indices: 78018168--78018215 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
78018158 TGTTACAAAA
*
78018168 AAAATTCAAAATTCAAAATTC
1 AAAATTCAAAATTCAAAATGC
*
78018189 AAAATTCAAAATTCAAAATGG
1 AAAATTCAAAATTCAAAATGC
78018210 AAAATT
1 AAAATT
78018216 GAGAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.58, C:0.10, G:0.04, T:0.27
Consensus pattern (21 bp):
AAAATTCAAAATTCAAAATGC
Found at i:78018531 original size:20 final size:20
Alignment explanation
Indices: 78018517--78018567 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
78018507 ATTCTTTGTA
78018517 TTTT-TTAATATTTCTAGGT
1 TTTTGTTAATATTTCTAGGT
* *
78018536 TTTTGTTAATATTT-AAGAT
1 TTTTGTTAATATTTCTAGGT
78018555 TTTT-TTAATATTT
1 TTTTGTTAATATTT
78018568 TAAAGGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.31
19 11 0.38
20 9 0.31
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.65
Consensus pattern (20 bp):
TTTTGTTAATATTTCTAGGT
Found at i:78022142 original size:31 final size:31
Alignment explanation
Indices: 78022089--78022174 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
78022079 CTACACCATT
* * * * *
78022089 AGTCACTAAACTATTTGTAAGTTTTCTTTTT
1 AGTCACTGAACTATTCGAAAGTTTTCATTTA
* * *
78022120 GGTTATTGAACTATTCGAAAGTTTTCATTTA
1 AGTCACTGAACTATTCGAAAGTTTTCATTTA
*
78022151 AGTCACTGAACTATTCAAAAGTTT
1 AGTCACTGAACTATTCGAAAGTTT
78022175 GGAGTCACTA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (31 bp):
AGTCACTGAACTATTCGAAAGTTTTCATTTA
Found at i:78024936 original size:44 final size:43
Alignment explanation
Indices: 78024884--78025043 Score: 144
Period size: 44 Copynumber: 3.6 Consensus size: 43
78024874 GTTTGCCAAT
* * *
78024884 AAATTGCCACTAGGTTGT-GAGTGCACAGTAAGATTCACAGATA
1 AAATTGCCACTAGGTTGTGGA-TACACAGCAAAATTCACAGATA
*
78024927 AAATCTGCCACTAGGTTGTGGATACACAGCAAAATTCGCAGATAA
1 AAAT-TGCCACTAGGTTGTGGATACACAGCAAAATTCACAGAT-A
* * * *
78024972 AAATTTCCACT-GGATTGTGAATACATAGCAAAATATCGCAGATA
1 AAATTGCCACTAGG-TTGTGGATACACAGCAAAAT-TCACAGATA
* * * *
78025016 AAATTTGCCATTGGGTTGTAGATGCACA
1 AAA-TTGCCACTAGGTTGTGGATACACA
78025044 ACATATTTGT
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 59 0.61
45 30 0.31
46 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (43 bp):
AAATTGCCACTAGGTTGTGGATACACAGCAAAATTCACAGATA
Found at i:78025013 original size:45 final size:45
Alignment explanation
Indices: 78024884--78025018 Score: 152
Period size: 44 Copynumber: 3.0 Consensus size: 45
78024874 GTTTGCCAAT
* * * * *
78024884 AAAT-TGCCACTAGGTTGTGAGTGCACAGTAAGATTCACAGAT-A
1 AAATCTGCCACTAGGTTGTGAATACACAGCAAAATTCGCAGATAA
*
78024927 AAATCTGCCACTAGGTTGTGGATACACAGCAAAATTCGCAGATAA
1 AAATCTGCCACTAGGTTGTGAATACACAGCAAAATTCGCAGATAA
* *
78024972 AAAT-TTCCACT-GGATTGTGAATACATAGCAAAATATCGCAGATAA
1 AAATCTGCCACTAGG-TTGTGAATACACAGCAAAAT-TCGCAGATAA
78025017 AA
1 AA
78025019 TTTGCCATTG
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
43 6 0.08
44 56 0.71
45 17 0.22
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (45 bp):
AAATCTGCCACTAGGTTGTGAATACACAGCAAAATTCGCAGATAA
Found at i:78025303 original size:39 final size:39
Alignment explanation
Indices: 78025241--78025334 Score: 129
Period size: 39 Copynumber: 2.5 Consensus size: 39
78025231 ACATTAGAAA
* * * *
78025241 TAGACATGT-ATAACGTGTACTCAATTCGTTAATAACAG
1 TAGACATGTCTTAACATGTACTCAATTCATCAATAACAG
78025279 TAGACATGTCTTAACATGTACTCAATTCATCAATAACAG
1 TAGACATGTCTTAACATGTACTCAATTCATCAATAACAG
*
78025318 TAGACATG-CTTATCATG
1 TAGACATGTCTTAACATG
78025335 CTCTTAGTAG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 17 0.34
39 33 0.66
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (39 bp):
TAGACATGTCTTAACATGTACTCAATTCATCAATAACAG
Found at i:78025848 original size:17 final size:17
Alignment explanation
Indices: 78025826--78025860 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
78025816 CATTAATTTG
*
78025826 AATGAAAGTTTGACATT
1 AATGAAAGATTGACATT
78025843 AATGAAAGATTGACATT
1 AATGAAAGATTGACATT
78025860 A
1 A
78025861 GATGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (17 bp):
AATGAAAGATTGACATT
Found at i:78028996 original size:24 final size:26
Alignment explanation
Indices: 78028943--78029004 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 26
78028933 ATTGAAATAG
*
78028943 GAAAGAATAAAAAATAAAAGTCATTT
1 GAAAGAATAAAAAATAAAAGTCATTA
* *
78028969 GAAAGAAT-TAAAATCAAA-TCATTA
1 GAAAGAATAAAAAATAAAAGTCATTA
*
78028993 GAAAGAAGAAAA
1 GAAAGAATAAAA
78029005 TGATTTCACT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 12 0.40
25 10 0.33
26 8 0.27
ACGTcount: A:0.63, C:0.05, G:0.13, T:0.19
Consensus pattern (26 bp):
GAAAGAATAAAAAATAAAAGTCATTA
Found at i:78031491 original size:17 final size:17
Alignment explanation
Indices: 78031471--78031505 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
78031461 AAAATCAAAG
78031471 TAAATTTTACCTAATAA
1 TAAATTTTACCTAATAA
78031488 TAAATTTTACCTAATAA
1 TAAATTTTACCTAATAA
78031505 T
1 T
78031506 GAACCTTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAATTTTACCTAATAA
Found at i:78031865 original size:16 final size:16
Alignment explanation
Indices: 78031844--78031874 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
78031834 ATACTCAAAA
78031844 TACTAGTTGCAATGTG
1 TACTAGTTGCAATGTG
78031860 TACTAGTTGCAATGT
1 TACTAGTTGCAATGT
78031875 TGTTCCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (16 bp):
TACTAGTTGCAATGTG
Found at i:78033079 original size:14 final size:14
Alignment explanation
Indices: 78033060--78033086 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78033050 AGGAATGATG
78033060 TATGAAAATTTTAA
1 TATGAAAATTTTAA
78033074 TATGAAAATTTTA
1 TATGAAAATTTTA
78033087 TTGATTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
TATGAAAATTTTAA
Found at i:78036697 original size:50 final size:50
Alignment explanation
Indices: 78036612--78036714 Score: 161
Period size: 50 Copynumber: 2.1 Consensus size: 50
78036602 TAGGTAGAAC
* **
78036612 AAACAAATACAAGAAAGAAGTAAAAACTATCAAGCCATGGACATAATAAT
1 AAACAAATACAAGAAAGAAGTAAAAACTATAAAGCCATAAACATAATAAT
* *
78036662 AAACAAATACAAGAAAGAAGTAAAAGCTATAAAGCCATAAACATAATGAT
1 AAACAAATACAAGAAAGAAGTAAAAACTATAAAGCCATAAACATAATAAT
78036712 AAA
1 AAA
78036715 TAATGCCCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.60, C:0.13, G:0.12, T:0.16
Consensus pattern (50 bp):
AAACAAATACAAGAAAGAAGTAAAAACTATAAAGCCATAAACATAATAAT
Found at i:78037020 original size:103 final size:103
Alignment explanation
Indices: 78036818--78037027 Score: 260
Period size: 103 Copynumber: 2.0 Consensus size: 103
78036808 CATACCAGAG
* * *
78036818 AATTCTTATGGCAATAGCATATATGACAATAAAGACATAACACAAAATTTAGGCTAGTAGAATAC
1 AATTCTTATGGCAATAGCATATATGACAATAAAGACACAACACAAAATTCAAGCTAGTAGAATAC
* ** * * *
78036883 AAGCAATGGAAAAATTAGCATTGTTCTTAAAATAGAAA
66 AAGCAATGGAAAAATCAAAACTGTACTCAAAATAGAAA
* *** *
78036921 AATTCTTATGGCAATAGCATATAT-AGCAATAAAGACACAATAGGGACTTCAAGCTAGTAGAATA
1 AATTCTTATGGCAATAGCATATATGA-CAATAAAGACACAACACAAAATTCAAGCTAGTAGAATA
* *
78036985 CAAGGAATGGAAAAATCAAAACTGTACTCAGAATAGAAA
65 CAAGCAATGGAAAAATCAAAACTGTACTCAAAATAGAAA
78037024 AATT
1 AATT
78037028 AGAGATAACA
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
102 1 0.01
103 89 0.99
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (103 bp):
AATTCTTATGGCAATAGCATATATGACAATAAAGACACAACACAAAATTCAAGCTAGTAGAATAC
AAGCAATGGAAAAATCAAAACTGTACTCAAAATAGAAA
Found at i:78037664 original size:150 final size:152
Alignment explanation
Indices: 78037503--78037806 Score: 470
Period size: 150 Copynumber: 2.0 Consensus size: 152
78037493 ATTAGGAATA
*
78037503 TTTTTTTTATATTTATATATAAAATTAATAAAAATAAATTATGGTAAGATTTAAACTTATAATAT
1 TTTTTTTTATATTTATATATAAAATTAATAAAAATAAATTATGATAAGATTTAAACTTATAATAT
** * *
78037568 TATGATTCACAATCTTTT-A-TTTTTATATGAAATTTTAATAAATATATTTTACATAATTTTTTA
66 TATGATTCACAATCTTTTAATTTTTTATACAAAATTTTAAGAAATATAGTTTACATAATTTTTTA
*
78037631 CTCATATCAGCT-ATAACACTTG
131 CTCACATCAG-TGATAACACTTG
* *
78037653 TTTTTTTTATATTTATGTATAAAATTAATAAAAATAATTTATGATAAGATTTAAACTTATAATAT
1 TTTTTTTTATATTTATATATAAAATTAATAAAAATAAATTATGATAAGATTTAAACTTATAATAT
* * *
78037718 TATGATTCATAATCTTTTAATTTTTTATACAAAATTTTAAGAAATATAGTTTGCATATTTTTTTA
66 TATGATTCACAATCTTTTAATTTTTTATACAAAATTTTAAGAAATATAGTTTACATAATTTTTTA
*
78037783 CTCACATCAGTGATAGCACTTG
131 CTCACATCAGTGATAACACTTG
78037805 TT
1 TT
78037807 GTCTAAAATT
Statistics
Matches: 139, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
150 79 0.57
151 2 0.01
152 58 0.42
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (152 bp):
TTTTTTTTATATTTATATATAAAATTAATAAAAATAAATTATGATAAGATTTAAACTTATAATAT
TATGATTCACAATCTTTTAATTTTTTATACAAAATTTTAAGAAATATAGTTTACATAATTTTTTA
CTCACATCAGTGATAACACTTG
Found at i:78037736 original size:75 final size:75
Alignment explanation
Indices: 78037507--78037740 Score: 201
Period size: 75 Copynumber: 3.1 Consensus size: 75
78037497 GGAATATTTT
* *
78037507 TTTTATATTTATATATAAAATTAATAAAAATAAATTATGGTAAGATTTAAACTTATAATATTATG
1 TTTTATATTTATATATAAAATTAATAAAAATAATTTATGATAAGATTTAAACTTATAATATTATG
*
78037572 ATTCACAATC
66 ATTCATAATC
* * * * * ** * *
78037582 TTTTAT-TTT-TATATGAAATTTTAATAAATATATTTTA-CATAA-TTTTTTACTCAT-ATCAGC
1 TTTTATATTTATATAT-AAA-ATTAATAAAAATAATTTATGATAAGATTTAAACTTATAAT-A-T
* ** * ** *
78037642 TATAACACTTGTTTT
62 TATGATTCAT-AATC
*
78037657 TTTTATATTTATGTATAAAATTAATAAAAATAATTTATGATAAGATTTAAACTTATAATATTATG
1 TTTTATATTTATATATAAAATTAATAAAAATAATTTATGATAAGATTTAAACTTATAATATTATG
78037722 ATTCATAATC
66 ATTCATAATC
78037732 TTTTA-ATTT
1 TTTTATATTT
78037741 TTTATACAAA
Statistics
Matches: 113, Mismatches: 36, Indels: 21
0.66 0.21 0.12
Matches are distributed among these distances:
72 2 0.02
73 14 0.12
74 18 0.16
75 48 0.42
76 16 0.14
77 13 0.12
78 2 0.02
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.48
Consensus pattern (75 bp):
TTTTATATTTATATATAAAATTAATAAAAATAATTTATGATAAGATTTAAACTTATAATATTATG
ATTCATAATC
Found at i:78041749 original size:20 final size:20
Alignment explanation
Indices: 78041724--78041765 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
78041714 TTATTTTCAA
78041724 AGAATATTCTAAATAGACTG
1 AGAATATTCTAAATAGACTG
78041744 AGAATATTCTAAATAGACTG
1 AGAATATTCTAAATAGACTG
78041764 AG
1 AG
78041766 TCTAGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (20 bp):
AGAATATTCTAAATAGACTG
Found at i:78042774 original size:22 final size:22
Alignment explanation
Indices: 78042749--78042806 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
78042739 AAGATGAAGT
78042749 AAATAAT-ATATAAAGCAA-TTTA
1 AAATAATAATATAAA--AAGTTTA
78042771 AAATAAATAATATAAAAAGTTTA
1 AAAT-AATAATATAAAAAGTTTA
78042794 AAATAATAATATA
1 AAATAATAATATA
78042807 TATATAGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 15 0.45
23 11 0.33
24 7 0.21
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (22 bp):
AAATAATAATATAAAAAGTTTA
Found at i:78042793 original size:23 final size:25
Alignment explanation
Indices: 78042748--78042913 Score: 99
Period size: 26 Copynumber: 6.4 Consensus size: 25
78042738 AAAGATGAAG
78042748 TAAATAATATATAAAGCAATTTAAAA
1 TAAATAATATATAAA-CAATTTAAAA
*
78042774 TAAATAATATA-AAA-AGTTTAAAA
1 TAAATAATATATAAACAATTTAAAA
* * *
78042797 T-AATAATATATATATAGTAACTTAAAG
1 TAAATAATATATA-A-A-CAATTTAAAA
* *
78042824 CAAATAATATATCAACAATTTAAAAA
1 TAAATAATATATAAACAATTT-AAAA
* *
78042850 TAGTATATAATA-A-AAACAGTTTGAAA
1 TA--A-ATAATATATAAACAATTTAAAA
* * * *
78042876 TAAATACTATTTAAAATAATTTAAGA
1 TAAATAATATAT-AAACAATTTAAAA
78042902 TAAAATAATATA
1 T-AAATAATATA
78042914 ATATTTTAAA
Statistics
Matches: 105, Mismatches: 21, Indels: 27
0.69 0.14 0.18
Matches are distributed among these distances:
22 9 0.09
23 15 0.14
24 2 0.02
25 8 0.08
26 31 0.30
27 22 0.21
28 12 0.11
29 6 0.06
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (25 bp):
TAAATAATATATAAACAATTTAAAA
Found at i:78046923 original size:99 final size:94
Alignment explanation
Indices: 78046766--78047023 Score: 240
Period size: 96 Copynumber: 2.7 Consensus size: 94
78046756 ATGCTATGCC
* ** * *
78046766 CCCAGACATGGTCTTACACTGGCTCATACA--TCAA-GTTGATGCCACGTCTCAGACATGGTCTT
1 CCCAGACATGGTCTTACACTAGCTC-T-CATGTCAATGCCGATGCCATGTCCCAGACATGGTCTT
*
78046828 ACATTGAC-TATCGCAATCGAGGCCGA-AGCCATGT
64 ACATTGACACATCGC-AT--A-GCCGATA-CCATGT
* * * * *
78046862 CTCAGACCTGGTCTTACACTAGCTCTCACATATTC-GTGTCGATGCCATGTCCCAGACATGGTCT
1 CCCAGACATGGTCTTACACTAGCTCT--CAT-GTCAATGCCGATGCCATGTCCCAGACATGGTCT
** *
78046926 TATGTTGACACATCTCATAGCCGATACCATGT
63 TACATTGACACATCGCATAGCCGATACCATGT
* *
78046958 CCCAGACATGGTCTTACACTAGCTCTCGTGTCAATGCCAATGCCATGTCCCAGACATGGTCTTAC
1 CCCAGACATGGTCTTACACTAGCTCTCATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTAC
78047023 A
66 A
78047024 CTGGCTCTCA
Statistics
Matches: 134, Mismatches: 20, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
93 2 0.01
94 30 0.22
95 1 0.01
96 60 0.45
97 2 0.01
99 35 0.26
100 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
CCCAGACATGGTCTTACACTAGCTCTCATGTCAATGCCGATGCCATGTCCCAGACATGGTCTTAC
ATTGACACATCGCATAGCCGATACCATGT
Found at i:78048572 original size:26 final size:27
Alignment explanation
Indices: 78048521--78048588 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 27
78048511 CTTTTTTAAC
*
78048521 AAAAGAAAAACAAGAAGATAAAAAAG-
1 AAAAGAAAAAAAAGAAGATAAAAAAGT
**
78048547 AAAAGAAAAGAAAAGAA-ATACGAAAGT
1 AAAAGAAAA-AAAAGAAGATAAAAAAGT
78048574 AAAATGAAATAAAAA
1 AAAA-GAAA-AAAAA
78048589 AACCACCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
26 16 0.46
27 10 0.29
28 8 0.23
29 1 0.03
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.07
Consensus pattern (27 bp):
AAAAGAAAAAAAAGAAGATAAAAAAGT
Found at i:78049293 original size:44 final size:44
Alignment explanation
Indices: 78049216--78049305 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
78049206 CTTGTTCTGA
* * * *
78049216 TCCACTGTAACTTCAGAGAGATGAGACTTGTAGCTTTGATTTAC
1 TCCAATGTAACTTCAGAGAGAAGAGACTTGTAGCTTCGATCTAC
* *
78049260 TCCAATGTAA-TTCTAGGGAGAAGAGATTTGTAGCTTCGATCTAC
1 TCCAATGTAACTTC-AGAGAGAAGAGACTTGTAGCTTCGATCTAC
78049304 TC
1 TC
78049306 TGGTGGAACT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.08
44 36 0.92
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (44 bp):
TCCAATGTAACTTCAGAGAGAAGAGACTTGTAGCTTCGATCTAC
Found at i:78049633 original size:88 final size:89
Alignment explanation
Indices: 78049534--78049738 Score: 252
Period size: 89 Copynumber: 2.3 Consensus size: 89
78049524 TTTAATATGT
* * * * *
78049534 TCCACTGTAACTTCAGGGAAATGAGATTTGCTATCTTCA-TCTGCTCCGCTTCAACTTC-AGAGA
1 TCCACTGTAACTTCAGGGAGATGAGATTTCCTATCTTCAGTCTACTCCACTGCAACTTCAAG-GA
*
78049597 GATAAGACTTGTGGCTTCAATCTGC
65 GATAAGACTTGTGGCTTCAATCTGA
* * * *
78049622 TCCACTGTAACTTTAGGGAGATGAGGTTTCCTATCTTCAGTCTACTTCACTGCAATTTCAAGGAG
1 TCCACTGTAACTTCAGGGAGATGAGATTTCCTATCTTCAGTCTACTCCACTGCAACTTCAAGGAG
* *
78049687 ATAAGAGTTGTGGCTTCAATTTGA
66 ATAAGACTTGTGGCTTCAATCTGA
* * *
78049711 TCTACTGTAACTTGAGGGAGATTAGATT
1 TCCACTGTAACTTCAGGGAGATGAGATT
78049739 CGCAATGATG
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
88 35 0.35
89 62 0.63
90 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (89 bp):
TCCACTGTAACTTCAGGGAGATGAGATTTCCTATCTTCAGTCTACTCCACTGCAACTTCAAGGAG
ATAAGACTTGTGGCTTCAATCTGA
Found at i:78049634 original size:44 final size:44
Alignment explanation
Indices: 78049534--78049738 Score: 144
Period size: 44 Copynumber: 4.6 Consensus size: 44
78049524 TTTAATATGT
* * *
78049534 TCCACTGTAACTTCAGGGAAATGAGATTTGCTATCTTC-ATCTGC
1 TCCACTGTAACTTCAGGGAGATAAGATTTG-TAGCTTCAATCTGC
* * * *
78049578 TCCGCT-TCAACTTCAGAGAGATAAGACTTGTGGCTTCAATCTGC
1 TCCACTGT-AACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * * * * * *
78049622 TCCACTGTAACTTTAGGGAGATGAGGTTTCCTATCTTCAGTCTAC
1 TCCACTGTAACTTCAGGGAGATAAGATTT-GTAGCTTCAATCTGC
* * * * * * * *
78049667 TTCACTGCAATTTCAAGGAGATAAGAGTTGTGGCTTCAATTTGA
1 TCCACTGTAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
* * *
78049711 TCTACTGTAACTTGAGGGAGATTAGATT
1 TCCACTGTAACTTCAGGGAGATAAGATT
78049739 CGCAATGATG
Statistics
Matches: 116, Mismatches: 41, Indels: 8
0.70 0.25 0.05
Matches are distributed among these distances:
43 6 0.05
44 78 0.67
45 32 0.28
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34
Consensus pattern (44 bp):
TCCACTGTAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGC
Found at i:78061697 original size:22 final size:22
Alignment explanation
Indices: 78061667--78061725 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
78061657 AAAGAAGAAG
78061667 AAAAT-AATATATAAAAAATTT
1 AAAATAAATATATAAAAAATTT
* * *
78061688 AAATTAAATAACATAAAAAGTTT
1 AAAATAAAT-ATATAAAAAATTT
78061711 AAAATAATATATATA
1 AAAATAA-ATATATA
78061726 TATTTAGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 21 0.70
24 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATAAATATATAAAAAATTT
Found at i:78062789 original size:10 final size:10
Alignment explanation
Indices: 78062776--78062827 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
78062766 AAAAAGATGA
*
78062776 AAAAGAAAAG
1 AAAATAAAAG
78062786 AAAA-AAAAG
1 AAAATAAAAG
*
78062795 AAATACAAAAG
1 AAA-ATAAAAG
*
78062806 TAAAATAAAAT
1 -AAAATAAAAG
78062817 AAAATAAAAG
1 AAAATAAAAG
78062827 A
1 A
78062828 CCACCTTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.22
10 15 0.42
11 10 0.28
12 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAATAAAAG
Found at i:78066050 original size:29 final size:29
Alignment explanation
Indices: 78065995--78066051 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
78065985 TTTTTAAAAA
**
78065995 AATATTTACAAAAAGAGACATTTAATTTC
1 AATATTTACAAAAAGAGACATCAAATTTC
*
78066024 AATATTTACAAAAA-ATACAATCAAATTT
1 AATATTTACAAAAAGAGAC-ATCAAATTT
78066052 TGCAAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (29 bp):
AATATTTACAAAAAGAGACATCAAATTTC
Found at i:78069330 original size:14 final size:14
Alignment explanation
Indices: 78069311--78069348 Score: 62
Period size: 12 Copynumber: 2.9 Consensus size: 14
78069301 GACCTGGAGG
78069311 GTTCCAAAGAATTT
1 GTTCCAAAGAATTT
78069325 GTTCC-AA-AATTT
1 GTTCCAAAGAATTT
78069337 GTTCCAAAGAAT
1 GTTCCAAAGAAT
78069349 CTTCAGTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 10 0.45
13 4 0.18
14 8 0.36
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (14 bp):
GTTCCAAAGAATTT
Found at i:78073629 original size:27 final size:27
Alignment explanation
Indices: 78073599--78073654 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
78073589 AAAAAATTAT
*
78073599 TTTAATTAAAATTCAA-TATTTTAATAA
1 TTTAAGTAAAATTCAATTATTTT-ATAA
**
78073626 TTTAAGTGCAATTCAATTATTTTATAA
1 TTTAAGTAAAATTCAATTATTTTATAA
78073653 TT
1 TT
78073655 ATATTATATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (27 bp):
TTTAAGTAAAATTCAATTATTTTATAA
Found at i:78074632 original size:114 final size:115
Alignment explanation
Indices: 78074438--78074657 Score: 284
Period size: 114 Copynumber: 1.9 Consensus size: 115
78074428 TGAAAAAAAA
* * *
78074438 CCGCTAAAAGATTAAGCCGAACGACATCGTTTATTTTGAGCTTTAGTGGCATTAACGGCGCTTAA
1 CCGCTAAAAGATTAAGCCAAACGACATCGTTTACTTTGAGATTTAGTGGCATTAACGGCGCTTAA
*
78074503 TAAAAAACGATGCAATAG-TTGAGCT-TTAGCGGCG-TTTTTCAAAAAGCG
66 TAAAAAACGACGCAATAGATTGAG-TATTAGCGGCGCTTTTTCAAAAAGCG
* * ** *
78074551 CCGCTAAAAGATTAAGCCAAACGACGTCATTTTACTTTGAGATTTAGTGGCATTAGTGGCGCTTT
1 CCGCTAAAAGATTAAGCCAAACGACATC-GTTTACTTTGAGATTTAGTGGCATTAACGGCGCTTA
* ** *
78074616 GTCGAAAACGCCGCAATAGATTGAGTATTAGCGGCGCTTTTT
65 ATAAAAAACGACGCAATAGATTGAGTATTAGCGGCGCTTTTT
78074658 GAAACGCACC
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
113 26 0.29
114 45 0.50
115 14 0.16
116 5 0.06
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (115 bp):
CCGCTAAAAGATTAAGCCAAACGACATCGTTTACTTTGAGATTTAGTGGCATTAACGGCGCTTAA
TAAAAAACGACGCAATAGATTGAGTATTAGCGGCGCTTTTTCAAAAAGCG
Found at i:78074727 original size:14 final size:15
Alignment explanation
Indices: 78074692--78074741 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 15
78074682 ACTATTTTAA
*
78074692 GGTTTAAGGATTAAT
1 GGTTTAAGGATTGAT
*
78074707 GGGTTTAAGGGTTG-T
1 -GGTTTAAGGATTGAT
78074722 GGTTT-AGGATTGAT
1 GGTTTAAGGATTGAT
78074736 GGTTTA
1 GGTTTA
78074742 TGTTTTATGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 6 0.21
14 11 0.38
15 1 0.03
16 11 0.38
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (15 bp):
GGTTTAAGGATTGAT
Found at i:78075270 original size:14 final size:15
Alignment explanation
Indices: 78075248--78075292 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
78075238 AAACACTAGA
*
78075248 CCTTAACCCATAAAT
1 CCTTAACCCATAAAC
*
78075263 CC-TAACCCATTAAC
1 CCTTAACCCATAAAC
78075277 CCTTAAACCCATAAAC
1 CCTT-AACCCATAAAC
78075293 TATAAGCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 12 0.48
15 3 0.12
16 10 0.40
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (15 bp):
CCTTAACCCATAAAC
Found at i:78075347 original size:22 final size:22
Alignment explanation
Indices: 78075310--78075363 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
78075300 TTTAAATCTC
78075310 AAAC-CTTAAACTATAAACCCT
1 AAACTCTTAAACTATAAACCCT
78075331 AAACTCTTAAA-TCATAAACCCT
1 AAACTCTTAAACT-ATAAACCCT
*
78075353 AAAATCTTAAA
1 AAACTCTTAAA
78075364 AATAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (22 bp):
AAACTCTTAAACTATAAACCCT
Found at i:78075864 original size:42 final size:42
Alignment explanation
Indices: 78075818--78075910 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
78075808 TCAAGGTTTA
*
78075818 GGGTATTGGATTCAAAATTTAGTTTATAAGGTTTAGGGTATT
1 GGGTATTGGATTCAAAATTTAGTCTATAAGGTTTAGGGTATT
* * *** *
78075860 GGGTATTGGGTTTAGGGTTTAGTCTATAGGGTTTAGGGTATT
1 GGGTATTGGATTCAAAATTTAGTCTATAAGGTTTAGGGTATT
*
78075902 GTGTATTGG
1 GGGTATTGG
78075911 GTTTAGCGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.22, C:0.02, G:0.33, T:0.43
Consensus pattern (42 bp):
GGGTATTGGATTCAAAATTTAGTCTATAAGGTTTAGGGTATT
Found at i:78075873 original size:21 final size:21
Alignment explanation
Indices: 78075847--78075916 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 21
78075837 TAGTTTATAA
*
78075847 GGTTTAGGGTATTGGGTATTG
1 GGTTTAGGGTATTGTGTATTG
* *
78075868 GGTTTAGGGT-TTAGTCTATAG
1 GGTTTAGGGTATT-GTGTATTG
78075889 GGTTTAGGGTATTGTGTATTG
1 GGTTTAGGGTATTGTGTATTG
78075910 GGTTTAG
1 GGTTTAG
78075917 CGTTTAGTCT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.05
21 38 0.90
22 2 0.05
ACGTcount: A:0.16, C:0.01, G:0.39, T:0.44
Consensus pattern (21 bp):
GGTTTAGGGTATTGTGTATTG
Found at i:78075877 original size:14 final size:14
Alignment explanation
Indices: 78075847--78075902 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
78075837 TAGTTTATAA
78075847 GGTTTAGGGTATTG
1 GGTTTAGGGTATTG
78075861 GGTATT-GGGT-TTAG
1 GGT-TTAGGGTATT-G
** *
78075875 GGTTTAGTCTATAG
1 GGTTTAGGGTATTG
78075889 GGTTTAGGGTATTG
1 GGTTTAGGGTATTG
78075903 TGTATTGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
13 4 0.12
14 25 0.78
15 3 0.09
ACGTcount: A:0.16, C:0.02, G:0.39, T:0.43
Consensus pattern (14 bp):
GGTTTAGGGTATTG
Found at i:78075911 original size:42 final size:42
Alignment explanation
Indices: 78075835--78075928 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
78075825 GGATTCAAAA
* *
78075835 TTTAGTTTATAAGGTTTAGGGTATTGGGTATTGGGTTTAGGG
1 TTTAGTCTATAAGGTTTAGGGTATTGGGTATTGGGTTTAGCG
* *
78075877 TTTAGTCTATAGGGTTTAGGGTATTGTGTATTGGGTTTAGCG
1 TTTAGTCTATAAGGTTTAGGGTATTGGGTATTGGGTTTAGCG
78075919 TTTAGTCTAT
1 TTTAGTCTAT
78075929 TGGTTTTGGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (42 bp):
TTTAGTCTATAAGGTTTAGGGTATTGGGTATTGGGTTTAGCG
Found at i:78075929 original size:21 final size:21
Alignment explanation
Indices: 78075863--78075931 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
78075853 GGGTATTGGG
78075863 TATTGGGTTTAGGGTTTAGTC
1 TATTGGGTTTAGGGTTTAGTC
* *
78075884 TATAGGGTTTAGGGTATT-GTG
1 TATTGGGTTTAGGGT-TTAGTC
*
78075905 TATTGGGTTTAGCGTTTAGTC
1 TATTGGGTTTAGGGTTTAGTC
78075926 TATTGG
1 TATTGG
78075932 TTTTGGGCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 2 0.05
21 37 0.90
22 2 0.05
ACGTcount: A:0.16, C:0.04, G:0.33, T:0.46
Consensus pattern (21 bp):
TATTGGGTTTAGGGTTTAGTC
Found at i:78079021 original size:50 final size:49
Alignment explanation
Indices: 78078937--78079042 Score: 126
Period size: 50 Copynumber: 2.2 Consensus size: 49
78078927 GTTTACACAA
* * * *
78078937 AACAAA-TAGATCTTAAATTTATATATTCTATCAATTT-GATCTTGATTT
1 AACAAATTAAATCGTAAATTTATATATTCTATCAATTTAG-TCATAATTT
* *
78078985 AACAAATTAAATCGTAATATTTATATCTTCTGTCAATTTAGTCATAATTT
1 AACAAATTAAATCGTAA-ATTTATATATTCTATCAATTTAGTCATAATTT
78079035 AACAAATT
1 AACAAATT
78079043 TAGCTCATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
48 6 0.12
49 8 0.16
50 34 0.69
51 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (49 bp):
AACAAATTAAATCGTAAATTTATATATTCTATCAATTTAGTCATAATTT
Found at i:78080012 original size:45 final size:45
Alignment explanation
Indices: 78079920--78080012 Score: 114
Period size: 45 Copynumber: 2.1 Consensus size: 45
78079910 ACCCACATAA
* * * * * *
78079920 TACATAAATATATATCATATCATAAGTTACATAAGTTACATACCT
1 TACAAAAATATATATCATAACATAACTTACAAAACTTACATAACT
* *
78079965 TACAAAAATGTATATCATAACATAACTTACAAAACTTACTTAACT
1 TACAAAAATATATATCATAACATAACTTACAAAACTTACATAACT
78080010 TAC
1 TAC
78080013 GTAATACATA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.33
Consensus pattern (45 bp):
TACAAAAATATATATCATAACATAACTTACAAAACTTACATAACT
Found at i:78085143 original size:13 final size:14
Alignment explanation
Indices: 78085127--78085155 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
78085117 TTATAAATAT
78085127 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
78085140 TTATAATGGTTTAA
1 TTATAATGGTTTAA
78085154 TT
1 TT
78085156 CGTCATTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:78086731 original size:37 final size:37
Alignment explanation
Indices: 78086690--78086765 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
78086680 GTAGCTAATA
78086690 TTGATTAAAATCCCTCACTTAATCAATCCATAACCTT
1 TTGATTAAAATCCCTCACTTAATCAATCCATAACCTT
78086727 TTGATTAAAATCCCTCACTTAATCAATCCATAACCTT
1 TTGATTAAAATCCCTCACTTAATCAATCCATAACCTT
78086764 TT
1 TT
78086766 CCCAACAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (37 bp):
TTGATTAAAATCCCTCACTTAATCAATCCATAACCTT
Found at i:78087348 original size:40 final size:40
Alignment explanation
Indices: 78087293--78087374 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
78087283 ATTCACCATT
78087293 TCTATGTTGTGGCACAACTAAATTCAATTTGAAAAAGAAA
1 TCTATGTTGTGGCACAACTAAATTCAATTTGAAAAAGAAA
*
78087333 TCTATGTTGTGGCACAATTAAATTCAATTTGAAAAAGAAA
1 TCTATGTTGTGGCACAACTAAATTCAATTTGAAAAAGAAA
78087373 TC
1 TC
78087375 CATACTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (40 bp):
TCTATGTTGTGGCACAACTAAATTCAATTTGAAAAAGAAA
Found at i:78088673 original size:50 final size:49
Alignment explanation
Indices: 78088579--78088677 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 49
78088569 GAGAACAAAT
* *
78088579 AAATACAAGAAATAAGTAAAAACTATCAATCCATGGACATAATGATAAAA
1 AAATACAAGAAAGAAGTAAAAACTATCAATCCA-GGACAAAATGATAAAA
* *
78088629 AAATACAAGAAAGAATTAAAAACTATGAAGTCACA-GACAAAATGATAAA
1 AAATACAAGAAAGAAGTAAAAACTATCAA-TC-CAGGACAAAATGATAAA
78088678 TAAGCCCTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 39 0.91
51 2 0.05
52 2 0.05
ACGTcount: A:0.60, C:0.11, G:0.11, T:0.18
Consensus pattern (49 bp):
AAATACAAGAAAGAAGTAAAAACTATCAATCCAGGACAAAATGATAAAA
Found at i:78091070 original size:104 final size:103
Alignment explanation
Indices: 78090884--78091083 Score: 285
Period size: 104 Copynumber: 1.9 Consensus size: 103
78090874 GGGTGTTACA
* * * *
78090884 GCAATAGCATATATGAAAATAAAGACACAATATGAGGTTTAGGCTATTAGAATACAAGCAATGGA
1 GCAATAGCATATATGAAAATAAAGACACAAAAGGAGGTTTAAGCTAGTAGAATACAAGCAATGGA
* *
78090949 AAAATCAACATTGTACTCAAAATAGAAAAATTCTTATG
66 AAAATCAACACTATACTCAAAATAGAAAAATTCTTATG
** *
78090987 GCAATAGCATATATGGCAATAAAGACACAACAAGGA-GTTTCAAGCTAGTAGTATACAAGCAATG
1 GCAATAGCATATATGAAAATAAAGACACAA-AAGGAGGTTT-AAGCTAGTAGAATACAAGCAATG
*
78091051 GAAAAATCAACACTATACTCATAATAGAAAAAT
64 GAAAAATCAACACTATACTCAAAATAGAAAAAT
78091084 AAGCGATAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
103 32 0.38
104 53 0.62
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (103 bp):
GCAATAGCATATATGAAAATAAAGACACAAAAGGAGGTTTAAGCTAGTAGAATACAAGCAATGGA
AAAATCAACACTATACTCAAAATAGAAAAATTCTTATG
Found at i:78093533 original size:76 final size:77
Alignment explanation
Indices: 78093430--78093589 Score: 225
Period size: 76 Copynumber: 2.1 Consensus size: 77
78093420 CACTTTGGTT
* * *
78093430 TTGCACATATTTTTATCATGGCTTTGCCATGATCGCACG-CTTTATCACATTACCATAGCTTAGC
1 TTGCACATATTTTTACCATGGCCTTGCCATGATCACA-GACTTTATCACATTACCATAGCTTAGC
* *
78093494 TATGGTCTCGCAC
65 TATGGTCTCACAA
* **
78093507 TTGCACATA-TTTTACCATGGCCTTGCCATGATCACAGACTTTATCACTTTGTCATAGCTTAGCT
1 TTGCACATATTTTTACCATGGCCTTGCCATGATCACAGACTTTATCACATTACCATAGCTTAGCT
78093571 ATGGTCTCACAA
66 ATGGTCTCACAA
78093583 TTGCACA
1 TTGCACA
78093590 CAAATGTACT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
75 1 0.01
76 64 0.86
77 9 0.12
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.36
Consensus pattern (77 bp):
TTGCACATATTTTTACCATGGCCTTGCCATGATCACAGACTTTATCACATTACCATAGCTTAGCT
ATGGTCTCACAA
Found at i:78100194 original size:27 final size:27
Alignment explanation
Indices: 78100153--78100206 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78100143 TGTCATGTGA
* *
78100153 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
78100180 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
78100207 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:78100541 original size:49 final size:49
Alignment explanation
Indices: 78100452--78100646 Score: 246
Period size: 49 Copynumber: 3.9 Consensus size: 49
78100442 TCTATTGTGA
* *
78100452 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* * * *
78100501 GGTCGCATGTGTAGTACTAAGTGCAGGTTACTCTGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA-TT
* * * * *
78100551 CGATCACGTGTATCGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
** *
78100601 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATA
78100647 GCCTTCTCTA
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
49 79 0.65
50 4 0.03
51 38 0.31
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
Found at i:78100638 original size:100 final size:100
Alignment explanation
Indices: 78100465--78100646 Score: 319
Period size: 100 Copynumber: 1.8 Consensus size: 100
78100455 CACATGTGTA
*
78100465 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGTT
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCT
* *
78100530 ACTCTGCGTACCCGATAACTTCGATCACGTGTATC
66 ACTATGCGTACCAGATAACTTCGATCACGTGTATC
* *
78100565 GTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCATGTGTAGTACTAAGTGCAGGCT
1 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCT
78100630 ACTATGCGTACCAGATA
66 ACTATGCGTACCAGATA
78100647 GCCTTCTCTA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
GTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCT
ACTATGCGTACCAGATAACTTCGATCACGTGTATC
Found at i:78100676 original size:100 final size:99
Alignment explanation
Indices: 78100469--78100679 Score: 273
Period size: 100 Copynumber: 2.1 Consensus size: 99
78100459 TGTGTAGTAC
* *
78100469 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGTTACTC
1 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
* ** * *
78100534 TGCGTACCCGATAACTTCGATCACGTGTATCGTAC
66 TGCGTACCAGATAACTTC-ATCACAAGTATCGAAA
* *
78100569 TAAGTGCAGGCTACTATGTGTACCGGATAATTGGTTGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
*
78100634 TGCGTACCAGATAGCCTTC-TCTACAAGTAT-GAAAA
66 TGCGTACCAGATA-ACTTCATC-ACAAGTATCG-AAA
*
78100669 TATGTGCAGGC
1 TAAGTGCAGGC
78100680 AACTGAGTAT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
99 3 0.03
100 90 0.93
101 4 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (99 bp):
TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
TGCGTACCAGATAACTTCATCACAAGTATCGAAA
Found at i:78106060 original size:27 final size:27
Alignment explanation
Indices: 78106019--78106072 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78106009 TGTCATGTGA
* *
78106019 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
78106046 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
78106073 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:78106461 original size:51 final size:51
Alignment explanation
Indices: 78106321--78106488 Score: 232
Period size: 51 Copynumber: 3.3 Consensus size: 51
78106311 TATTGTGAGG
* *
78106321 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
*
78106372 CCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* * * * *
78106423 TCACGTGTATAGTACTAAGTGCAGGCTACTAAGTGTACCGGATAA-TT-GG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
* *
78106472 TCACATGTGTACTACTA
1 TCACGTGTGTAGTACTA
78106489 TGCGTACCAG
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
49 15 0.14
50 2 0.02
51 88 0.84
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
Found at i:78109766 original size:147 final size:147
Alignment explanation
Indices: 78109495--78109783 Score: 391
Period size: 147 Copynumber: 2.0 Consensus size: 147
78109485 TTGACCATGC
* * * *
78109495 ACAACAACATATCTTTCAACAACTGTTGGATTAGTAGATATAAAAGCATGATCATCTAGGTTCAA
1 ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAACAAGATCATCTAGGATCAA
* ** * * *
78109560 TTCCCGATCTATATAAAAATTTGGCTCGATTTATTAATTTCAAACATTTTATAAAAATCTATTAT
66 TTACCGATCTATATAAAAATTCAGCTCGATTGATCAATTTCAAACATCTTATAAAAATCTATTAT
**
78109625 ATGTATGTATCAATTAA
131 ACATATGTATCAATTAA
* * *
78109642 ACAACAGCATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAATAAGATCATCTTGGATCAA
1 ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAACAAGATCATCTAGGATCAA
* * * *
78109707 TTACTGATCTATATAACAATTCAGTTCGATTGATCAA-TTCTAAACATCTTATAACAATCTATTA
66 TTACCGATCTATATAAAAATTCAGCTCGATTGATCAATTTC-AAACATCTTATAAAAATCTATTA
78109771 TACATATGTATCA
130 TACATATGTATCA
78109784 GTTCAATTTC
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
146 3 0.02
147 119 0.98
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (147 bp):
ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAACAAGATCATCTAGGATCAA
TTACCGATCTATATAAAAATTCAGCTCGATTGATCAATTTCAAACATCTTATAAAAATCTATTAT
ACATATGTATCAATTAA
Found at i:78110730 original size:146 final size:147
Alignment explanation
Indices: 78110460--78110734 Score: 403
Period size: 146 Copynumber: 1.9 Consensus size: 147
78110450 CTGACCATGC
* *
78110460 ACAACGACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAGCATAATCATCTAGGTTCAA
1 ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAGCATAATCATCTAGGTTAAA
* * *
78110525 TTCTCAATCTATATAAAAATTCAGTTCGATTTATCAATTTCAAACATTTTATAAAAATCTATTAC
66 TTCTCAATCTATATAAAAATTCAATTCGATTTATCAATTCCAAACATCTTATAAAAATCTATTAC
78110590 ATGTATGTATCAATTAA
131 ATGTATGTATCAATTAA
* * **
78110607 ACAACAACATATCTTTCAACAGCTGTTGGATTAGTAGATATAAAAG-A-AGATCATCTTTGTTAA
1 ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAGCATA-ATCATCTAGGTTAA
* * *
78110670 ATTC-CTTATCTATATAACAATTCAATTCGATTTATCAATTCCAAACATCTTATAACAATCTATT
65 ATTCTC-AATCTATATAAAAATTCAATTCGATTTATCAATTCCAAACATCTTATAAAAATCTATT
78110734 A
129 A
78110735 TATTTAAGTA
Statistics
Matches: 114, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
145 2 0.02
146 69 0.61
147 43 0.38
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (147 bp):
ACAACAACATATCTCTCAACAACTGTTGGATTAGTAGATATAAAAGCATAATCATCTAGGTTAAA
TTCTCAATCTATATAAAAATTCAATTCGATTTATCAATTCCAAACATCTTATAAAAATCTATTAC
ATGTATGTATCAATTAA
Found at i:78117973 original size:30 final size:31
Alignment explanation
Indices: 78117932--78117989 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
78117922 TTTCTGAGCC
*
78117932 TAGGGGTAAAATCAT-AATTTTACAAAGGTT
1 TAGGGGCAAAATCATAAATTTTACAAAGGTT
* *
78117962 TAGGGGCAAAATTATAAATTTTCCAAAG
1 TAGGGGCAAAATCATAAATTTTACAAAG
78117990 TTTGAGTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (31 bp):
TAGGGGCAAAATCATAAATTTTACAAAGGTT
Found at i:78119467 original size:46 final size:45
Alignment explanation
Indices: 78119417--78119592 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
78119407 TGGTTGAGCA
78119417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
78119463 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
78119510 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
78119556 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78119593 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78119573 original size:93 final size:93
Alignment explanation
Indices: 78119414--78119584 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
78119404 GGATGGTTGA
* *
78119414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
78119479 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
78119507 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78119572 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78119585 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:78122565 original size:15 final size:15
Alignment explanation
Indices: 78122527--78122570 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
78122517 CATAGTATCG
* *
78122527 TATCTTGGGTTTCTT
1 TATCTTGGATTTCTC
78122542 TAT-TCTGGATTTCTC
1 TATCT-TGGATTTCTC
78122557 TATCTTGGATTTCT
1 TATCTTGGATTTCT
78122571 TTATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 1 0.04
15 23 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:78124558 original size:46 final size:45
Alignment explanation
Indices: 78124508--78124683 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
78124498 TGGTTGAGCA
78124508 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
78124554 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACT-CGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGC-GAAG
* *
78124601 TCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
78124647 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78124684 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 67 0.63
47 30 0.28
48 2 0.02
49 3 0.03
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78124664 original size:93 final size:93
Alignment explanation
Indices: 78124505--78124675 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
78124495 GGATGGTTGA
* *
78124505 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
78124570 TGAGTCTGAGTTCGAGAGATGTAACTCG
66 TGAGTCCGAGTTCGAGAGATGTAACTCG
* * *
78124598 GCATCCGAGCTCGTTGAGTTGAGTCCGATTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78124663 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
78124676 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTCG
Found at i:78133169 original size:16 final size:15
Alignment explanation
Indices: 78133143--78133174 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
78133133 ACTAGATCGG
78133143 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
78133158 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
78133174 C
1 C
78133175 GGCATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:78133415 original size:27 final size:27
Alignment explanation
Indices: 78133385--78133446 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
78133375 ATTTACTAAA
78133385 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
*
78133412 ATACCCCT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
78133438 ATACCCCTA
1 ATACCCCTA
78133447 GGGTTAATTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 22 0.69
27 8 0.25
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:78133619 original size:28 final size:27
Alignment explanation
Indices: 78133551--78133664 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
78133541 GGAGGAAGCA
*
78133551 TTCTGGTGGCTCTGTCACAAATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTG
*
78133578 ATCTGGTGGCTCTGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCACAAATATCTG
*
78133605 TTTCTGATGGCTCTGCCACAACATA--TG
1 -TTCTGGTGGCTCTGCCACAA-ATATCTG
* * *
78133632 TATCTGGTGACTTTGTCAC-AATATCTG
1 T-TCTGGTGGCTCTGCCACAAATATCTG
78133659 TTCTGG
1 TTCTGG
78133665 CAACCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
25 3 0.04
26 7 0.09
27 43 0.58
28 18 0.24
29 3 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTG
Found at i:78133637 original size:55 final size:54
Alignment explanation
Indices: 78133551--78133660 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
78133541 GGAGGAAGCA
* * *
78133551 TTCTGGTGGCTCTGTCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGATGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCAC-AATATCTGT
* * *
78133606 TTCTGATGGCTCTGCCACAACATATGT-ATCTGGTGACTTTGTCACAATATCTGT
1 TTCTGATGGCTCTGCCACAA-ATATCTGATCTGGTGACTCTGCCACAATATCTGT
78133660 T
1 T
78133661 CTGGCAACCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 10 0.21
55 33 0.69
56 5 0.10
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (54 bp):
TTCTGATGGCTCTGCCACAAATATCTGATCTGGTGACTCTGCCACAATATCTGT
Found at i:78142098 original size:20 final size:20
Alignment explanation
Indices: 78142068--78142112 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
78142058 CTGTTTTATT
78142068 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
78142087 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
78142107 ATGGGC
1 ATGGGC
78142113 AAGACCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:78142242 original size:28 final size:28
Alignment explanation
Indices: 78142141--78142254 Score: 81
Period size: 28 Copynumber: 3.9 Consensus size: 28
78142131 ACTTGTAATA
* * *
78142141 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTAAGGCCCAGATTAATACTGATAT
* *
78142169 GGGCT-AGGCCCAGTATGCTCTGATA-TTATAAT
1 GGGCTAAGGCCCAG-A---T-TAATACTGAT-AT
*
78142201 AGGGCTATGGCCCAGATTAATACTGATAT
1 -GGGCTAAGGCCCAGATTAATACTGATAT
*
78142230 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAATACTGAT
78142255 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
27 17 0.25
28 19 0.28
29 6 0.09
30 4 0.06
31 3 0.04
32 7 0.10
33 6 0.09
34 7 0.10
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAATACTGATAT
Found at i:78142275 original size:62 final size:61
Alignment explanation
Indices: 78142136--78142277 Score: 173
Period size: 61 Copynumber: 2.3 Consensus size: 61
78142126 TCTCGACTTG
* * *
78142136 TAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTA
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATATTA
* * *
78142197 TAATAGGGCTATGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-TTC
1 TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATATTA
78142258 TGAATAGGGCTTA-GGCCCAG
1 T-AATAGGGC-TACGGCCCAG
78142278 TAAAGCTTGA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
61 39 0.55
62 30 0.42
63 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (61 bp):
TAATAGGGCTACGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATATTA
Found at i:78143076 original size:16 final size:17
Alignment explanation
Indices: 78143044--78143076 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78143034 CATCAAGAAG
78143044 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
78143062 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
78143077 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:78145367 original size:18 final size:16
Alignment explanation
Indices: 78145334--78145373 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
78145324 TTCTATATGG
78145334 ATTTTACATTTATTTT
1 ATTTTACATTTATTTT
78145350 ATTTTACCATTGTATTTT
1 ATTTTA-CATT-TATTTT
78145368 ATTTTA
1 ATTTTA
78145374 ACAAGGATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
17 4 0.18
18 12 0.55
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTTTACATTTATTTT
Found at i:78146056 original size:5 final size:5
Alignment explanation
Indices: 78146048--78146075 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
78146038 AATAAAAATG
78146048 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
78146076 GGTTGGTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:78152209 original size:17 final size:17
Alignment explanation
Indices: 78152181--78152229 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
78152171 CAGATCTTAT
78152181 TATTTT-ATTATTTTGAA
1 TATTTTAATTATTTT-AA
78152198 T-TTTTAATTATTATTAA
1 TATTTTAATTATT-TTAA
78152215 TATTTTAAGTTATTT
1 TATTTTAA-TTATTT
78152230 AAGAGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 9 0.32
19 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
TATTTTAATTATTTTAA
Found at i:78152735 original size:20 final size:18
Alignment explanation
Indices: 78152673--78152726 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
78152663 TATTTAGTTA
*
78152673 TTATTTTTAATTTTTTTCCT
1 TTATTTTTTA-TTTTTT-CT
*
78152693 TTATTTTTTAATTTTTC-
1 TTATTTTTTATTTTTTCT
78152710 TTATTTTTTATTTTTTC
1 TTATTTTTTATTTTTTC
78152727 AATTTATTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 16 0.52
18 1 0.03
19 5 0.16
20 9 0.29
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTATTTTTTATTTTTTCT
Found at i:78154182 original size:17 final size:16
Alignment explanation
Indices: 78154160--78154207 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
78154150 TCATGTTCCT
78154160 TTTATTATTTATTTGTA
1 TTTATTATTT-TTTGTA
*
78154177 TTTATTACTTTTTGTTA
1 TTTATTATTTTTTG-TA
*
78154194 TTTTTCTATTTTTT
1 TTTAT-TATTTTTT
78154208 TGAATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 4 0.15
17 15 0.58
18 7 0.27
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (16 bp):
TTTATTATTTTTTGTA
Found at i:78157346 original size:42 final size:41
Alignment explanation
Indices: 78157175--78157350 Score: 127
Period size: 42 Copynumber: 4.2 Consensus size: 41
78157165 ACACATAGAA
* * ***
78157175 TCATACCAATGTCATATCCCAGATATGGTCTTACATGGGATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACA-CAAATC
*** * * * *
78157217 TCATATTGATGCCAATAGCCCAGCTATGGTCTTAGACAATTC
1 TCATAACAATGCC-ATATCCCAGATATGGTCTTACACAAATC
* * * * * **
78157259 TCATATCAATGCCATGTCCCAAACATGGTCCTACTGGAAATC
1 TCATAACAATGCCATATCCCAGATATGGTCTTAC-ACAAATC
* *
78157301 TCATAACAATGTCATATCCCAGATATGGTCTTACACATAAAC
1 TCATAACAATGCCATATCCCAGATATGGTCTTACACA-AATC
78157343 TCATAACA
1 TCATAACA
78157351 CTAATGTCAT
Statistics
Matches: 99, Mismatches: 32, Indels: 6
0.72 0.23 0.04
Matches are distributed among these distances:
41 15 0.15
42 65 0.66
43 19 0.19
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (41 bp):
TCATAACAATGCCATATCCCAGATATGGTCTTACACAAATC
Found at i:78164878 original size:39 final size:39
Alignment explanation
Indices: 78164824--78164986 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
78164814 ATTTGATGTG
*
78164824 TATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
78164863 TATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
78164902 TATCGGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * *
78164941 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
78164980 TGTCCGG
1 TATCCGG
78164987 GCTAAAGTCC
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:78165003 original size:39 final size:39
Alignment explanation
Indices: 78164824--78165013 Score: 148
Period size: 39 Copynumber: 4.9 Consensus size: 39
78164814 ATTTGATGTG
* ** * * *
78164824 TATCCGAACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
** * * * *
78164863 TATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
* ** * * *
78164902 TATCGGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
* *
78164941 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
* * * *
78164980 TGTCCGGGC-TAAAGTCCCACAGGCTTCGAGCTGG
1 TATCCGGACTTAAAGT-CCACAGGCTACGTGCTGG
78165014 TATTATACCG
Statistics
Matches: 136, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
38 5 0.04
39 131 0.96
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCACAGGCTACGTGCTGGAAATA
Found at i:78165003 original size:78 final size:78
Alignment explanation
Indices: 78164838--78165004 Score: 221
Period size: 78 Copynumber: 2.1 Consensus size: 78
78164828 CGAACTTAGG
* * * *
78164838 GTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTACTGGAATTAT
1 GTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTACGTACTGGAAATAT
**
78164903 ATCGGGACTTAGG
66 ATCGGGACTTAAA
* *
78164916 GTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATAT
1 GTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTACGTACTGGAAATAT
*
78164981 GTCCGGG-C-TAAA
66 AT-CGGGACTTAAA
78164993 GTCCCACAGGCT
1 GT-CCACAGGCT
78165005 TCGAGCTGGT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
77 4 0.05
78 71 0.90
79 4 0.05
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (78 bp):
GTCCACAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTACGTACTGGAAATAT
ATCGGGACTTAAA
Done.