Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 234 of 362
Found at i:79209721 original size:27 final size:27
Alignment explanation
Indices: 79209556--79209721 Score: 149
Period size: 27 Copynumber: 6.1 Consensus size: 27
79209546 TTTGTAAATT
* *
79209556 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTCACAAA-CG
*
79209584 A-GGGTATTTTGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTCACAAACG
* * * *
79209610 AGTGGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAAACG
* * *
79209637 AAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTCACAAACG
**
79209664 AGGGGTATTTTGGTAA-TTCTATCCTAC-
1 AGGGGTATTTTGGTAATTTC-A-CAAACG
** *
79209691 AGGGGTATTTCAGTAATTTCACAATCG
1 AGGGGTATTTTGGTAATTTCACAAACG
79209718 AGGG
1 AGGG
79209722 TAAAACGGTA
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.04
27 102 0.89
28 7 0.06
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTCACAAACG
Found at i:79209747 original size:27 final size:27
Alignment explanation
Indices: 79209713--79209991 Score: 353
Period size: 27 Copynumber: 10.3 Consensus size: 27
79209703 GTAATTTCAC
79209713 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
79209740 AA-CTGAGGGTAAAATGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
*
79209767 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
79209794 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
79209821 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
79209848 AATCGAGGTTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
79209875 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
79209902 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* ** *
79209929 AATCGAGGGTGAAACGGTAATCCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * **
79209956 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
79209983 AATCGAGGG
1 AATCGAGGG
79209992 CATTTCAGTA
Statistics
Matches: 220, Mismatches: 30, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 218 0.99
28 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:79209829 original size:81 final size:81
Alignment explanation
Indices: 79209713--79209991 Score: 434
Period size: 81 Copynumber: 3.4 Consensus size: 81
79209703 GTAATTTCAC
* * *
79209713 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGATAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGATAATTTTGTAAATCGAGGGT
79209777 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTGTA
* *
79209794 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGTTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
*
79209859 AAACGGTAATTTTGTA
66 AAACGGTAATTCTGTA
* * *
79209875 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
* *
79209940 AAACGGTAATCCTATA
66 AAACGGTAATTCTGTA
*
79209956 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
79209992 CATTTCAGTA
Statistics
Matches: 182, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
81 181 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTGTA
Found at i:79211926 original size:11 final size:11
Alignment explanation
Indices: 79211906--79211939 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
79211896 AAGGATGATG
*
79211906 TAAAATTAAAA
1 TAAAATAAAAA
79211917 TAAAAATAAAAA
1 T-AAAATAAAAA
79211929 TAAAATAAAAA
1 TAAAATAAAAA
79211940 GGTAGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:79211932 original size:17 final size:17
Alignment explanation
Indices: 79211906--79211939 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79211896 AAGGATGATG
*
79211906 TAAAATTAAAATAAAAA
1 TAAAAATAAAATAAAAA
79211923 TAAAAATAAAATAAAAA
1 TAAAAATAAAATAAAAA
79211940 GGTAGTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
TAAAAATAAAATAAAAA
Found at i:79211939 original size:6 final size:6
Alignment explanation
Indices: 79211907--79211939 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
79211897 AGGATGATGT
*
79211907 AAAATT AAAATA AAAATA AAAAT- AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
79211940 GGTAGTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:79222721 original size:52 final size:52
Alignment explanation
Indices: 79222659--79222832 Score: 179
Period size: 52 Copynumber: 3.2 Consensus size: 52
79222649 GAATTCAAGT
* *
79222659 AGAAGGGATTTGTAGCCTCGGCCTACTACACTGAAACTTCAGAGATTTAGGG
1 AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCAGAGATTCAGGG
** ** * * *
79222711 AGAAGAGATTTGTAGTTTCGATCTTCT-CTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGTAGCCTCGGCCTACTAC-ACTGAAACTTC-A-G----AG-ATTCAGGG
*
79222770 AGAAGGGATTTGTAGCCTCGGCCTACTACACTGAAACTTCAGAGATTCAGGG
1 AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCAGAGATTCAGGG
79222822 AGAAGAGATTT
1 AGAAGAGATTT
79222833 TCAGTTTCGA
Statistics
Matches: 95, Mismatches: 18, Indels: 18
0.73 0.14 0.14
Matches are distributed among these distances:
51 1 0.01
52 48 0.51
53 3 0.03
54 1 0.01
57 1 0.01
58 3 0.03
59 37 0.39
60 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (52 bp):
AGAAGAGATTTGTAGCCTCGGCCTACTACACTGAAACTTCAGAGATTCAGGG
Found at i:79222784 original size:59 final size:59
Alignment explanation
Indices: 79222711--79222885 Score: 197
Period size: 59 Copynumber: 3.1 Consensus size: 59
79222701 AGATTTAGGG
79222711 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
* ** ** * * *
79222770 AGAAGGGATTTGTAGCCTCGGCCTACTAC-ACTGAAACTTC-A-G----AG-ATTCAGGG
1 AGAAGAGATTTGTAGTTTCGATCTTCT-CTACTGAAACTTCAAGGACTTAGAATTCAAGT
79222822 AGAAGAGATTT-TCAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
1 AGAAGAGATTTGT-AGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
79222881 AGAAG
1 AGAAG
79222886 GGATATAAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
51 2 0.02
52 36 0.40
53 3 0.03
54 1 0.01
57 1 0.01
58 3 0.03
59 43 0.48
60 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (59 bp):
AGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAACTTCAAGGACTTAGAATTCAAGT
Found at i:79222797 original size:111 final size:111
Alignment explanation
Indices: 79222572--79222889 Score: 532
Period size: 111 Copynumber: 2.9 Consensus size: 111
79222562 AGCCATGATT
* * * * * **
79222572 TACTCCACTGGAACTTCCGAGATTGAGGGAGAAGATATTTGTAGCCTCGATCTTCTCTACT-AAA
1 TACTACACTGAAACTTCAGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
*
79222636 TTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
66 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
*
79222682 TACTACACTGAAACTTCAGAGATTTAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
1 TACTACACTGAAACTTCAGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
79222747 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
66 CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
79222793 TACTACACTGAAACTTCAGAGATTCAGGGAGAAGAGATTT-TCAGTTTCGATCTTCTCTACTGAA
1 TACTACACTGAAACTTCAGAGATTCAGGGAGAAGAGATTTGT-AGTTTCGATCTTCTCTACTGAA
79222857 ACTTCAAGGACTTAGAATTCAAGTAGAAGGGAT
65 ACTTCAAGGACTTAGAATTCAAGTAGAAGGGAT
79222890 ATAAAATTTG
Statistics
Matches: 197, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
110 55 0.28
111 142 0.72
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (111 bp):
TACTACACTGAAACTTCAGAGATTCAGGGAGAAGAGATTTGTAGTTTCGATCTTCTCTACTGAAA
CTTCAAGGACTTAGAATTCAAGTAGAAGGGATTTGTAGCCTCGGCC
Found at i:79223335 original size:79 final size:77
Alignment explanation
Indices: 79223201--79223366 Score: 251
Period size: 79 Copynumber: 2.1 Consensus size: 77
79223191 GAAAAAACAA
* * *
79223201 AAATTGAAAATACCTCAGCGTGCGAGCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCACAATATGAGTT-A-ATT
79223266 TTTTTGAAAAGCAG
64 TTTTTGAAAAGCAG
* * *
79223280 AACTTGAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCACAATATGAGTTAATTTT
*
79223345 TTTGAGAAGCAG
66 TTTGAAAAGCAG
79223357 AAATTGAAAA
1 AAATTGAAAA
79223367 AAAATCTATT
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 24 0.30
78 1 0.01
79 54 0.68
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCACAATATGAGTTAATTTT
TTTGAAAAGCAG
Found at i:79223495 original size:74 final size:74
Alignment explanation
Indices: 79223374--79223825 Score: 397
Period size: 74 Copynumber: 6.0 Consensus size: 74
79223364 AAAAAAATCT
* * * *
79223374 ATTGAAAATACCTCGGCGTA-TGACCTGAGGTTCAATTCACCTCTAGCAATATGAATTGATTTTT
1 ATTGAAAATACCTCAGC-TAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
79223438 GAAAACATAA
65 GAAAACATAA
*
79223448 ATTGAAAATACCTC-GCTATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTTT
1 ATTGAAAATACCTCAGCTA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
79223512 GAAAACATAA
65 GAAAACATAA
* * * * *
79223522 ATTGAAAATACCTC-GTTATGCGACCCGAGGCTCAATTCACCTTTAGCAATATAAATTGATTTTT
1 ATTGAAAATACCTCAGCTA-GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
79223586 GAAAACATAA
65 GAAAACATAA
* * * * * *
79223596 ATTGAAAA-ACAGAAATCGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTAT
1 ATTGAAAATAC----CTC------AGCT-AG--TGACCCGAGGCTCAACTCACCTCTAGCAATAT
*
79223660 GAGTTGATTTTTGACAAACAGT-A
53 GAATTGATTTTTGA-AAACA-TAA
* * * *
79223683 ATTGAAAATACCTCAGC--GTGCCCCGAAGCTCAACTCGCCTCTAGCAATATGAGTTGATTTTTT
1 ATTGAAAATACCTCAGCTAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGA--TTTT
79223746 TGACAAACA-ATA
64 TGA-AAACATA-A
* * *
79223758 ATTGAAAATACCTCAGC--GT-ACCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTA
1 ATTGAAAATACCTCAGCTAGTGACCC-GAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTT
79223819 GAAAACA
65 GAAAACA
79223826 GACATAAAAA
Statistics
Matches: 323, Mismatches: 31, Indels: 51
0.80 0.08 0.13
Matches are distributed among these distances:
71 5 0.02
72 7 0.02
73 37 0.11
74 147 0.46
75 64 0.20
77 2 0.01
78 2 0.01
84 4 0.01
85 1 0.00
86 37 0.11
87 14 0.04
88 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (74 bp):
ATTGAAAATACCTCAGCTAGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTG
AAAACATAA
Found at i:79223772 original size:75 final size:75
Alignment explanation
Indices: 79223613--79223988 Score: 318
Period size: 75 Copynumber: 4.9 Consensus size: 75
79223603 AACAGAAATC
* * *
79223613 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGA--TTTTTGACA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
*
79223676 AACAGTAATT
66 AACAATAATT
* * * *
79223686 GAAAATACCTCAGCGTGCCCCGAAGCTCAACTCGCCTCTAGCAATATGAGTTGATTTTTTTGACA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
79223751 AACAATAATT
66 AACAATAATT
* ****
79223761 GAAAATACCTCAGCGTACCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAGAAAACA
1 GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT----TTTT
**
79223826 GACATAAAAACAGAAATT
62 GAC----AAACAATAATT
* ** * * * * *
79223844 GAAAGTGACTCAACACGTGAGCC-AAGGCTCAACTCACCTTTCTCAATATGAGTTGATTTTTTTG
1 GAAAATACCTCA--GCGTG-CCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
*
79223908 A-AAGTAGAAT--TT
63 ACAA--ACAATAATT
* * *
79223920 AAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATTATGAGTTGA-TTTTTTGA
1 -GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTTGA
79223984 -AAACA
64 CAAACA
79223989 GAAATGAAAC
Statistics
Matches: 239, Mismatches: 46, Indels: 36
0.74 0.14 0.11
Matches are distributed among these distances:
73 49 0.21
74 2 0.01
75 104 0.44
76 14 0.06
77 7 0.03
78 2 0.01
79 3 0.01
81 2 0.01
83 18 0.08
85 36 0.15
86 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (75 bp):
GAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACA
AACAATAATT
Found at i:79238154 original size:48 final size:48
Alignment explanation
Indices: 79237935--79238153 Score: 244
Period size: 48 Copynumber: 4.6 Consensus size: 48
79237925 TGAGATCCCA
* * * * *
79237935 TGTAAGACCATGTCTAGGACATGGC-TTGGCATCGAGATGAGATCTCG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCTAG
* * *
79237982 TATAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTG-TGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGAT-CTAG
* * * ** * *
79238030 TGTAAGACCATGTTTGGGACATGGCATCGGCCTTGACGTGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCTAG
* * *
79238078 TGTAAGACCATGTCTGGGACATGGCATCAGCATCGATATGTGATTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCTAG
*
79238126 TGTAAGACCATGTCTAGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
79238154 ATTATGAGAC
Statistics
Matches: 143, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
47 24 0.17
48 119 0.83
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATATGTGATCTAG
Found at i:79248956 original size:21 final size:21
Alignment explanation
Indices: 79248923--79248962 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79248913 ACAACGCAAA
* *
79248923 AAAGTATGGTTTTCCTAAAAT
1 AAAGTAAGATTTTCCTAAAAT
*
79248944 AAAGTAAGATTTTCGTAAA
1 AAAGTAAGATTTTCCTAAA
79248963 TGAAATAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
AAAGTAAGATTTTCCTAAAAT
Found at i:79263739 original size:23 final size:22
Alignment explanation
Indices: 79263709--79263804 Score: 84
Period size: 23 Copynumber: 4.2 Consensus size: 22
79263699 TAACATTCCA
*
79263709 TAGAATGAATCACATCAAAGTGC
1 TAGAATGAATCGCA-CAAAGTGC
* *
79263732 TAGAATGAGTCGCACAGATGTGC
1 TAGAATGAATCGCACA-AAGTGC
* * *
79263755 CAGAATGGATCCCACTAAAGTGC
1 TAGAATGAATCGCAC-AAAGTGC
* *
79263778 CAAAATGAATCGCACCAAAGTGC
1 TAGAATGAATCGCA-CAAAGTGC
79263801 TAGA
1 TAGA
79263805 TTGCTCCCAC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
22 2 0.04
23 53 0.93
24 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.19
Consensus pattern (22 bp):
TAGAATGAATCGCACAAAGTGC
Found at i:79273082 original size:23 final size:23
Alignment explanation
Indices: 79273052--79273103 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
79273042 TTATATATGC
79273052 TTTTTTATTCTCAAAAAGAATGG
1 TTTTTTATTCTCAAAAAGAATGG
79273075 TTTTTTATTCTCAAAAAGAATGG
1 TTTTTTATTCTCAAAAAGAATGG
79273098 TTTTTT
1 TTTTTT
79273104 TTTTCTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.50
Consensus pattern (23 bp):
TTTTTTATTCTCAAAAAGAATGG
Found at i:79279999 original size:46 final size:45
Alignment explanation
Indices: 79279931--79280134 Score: 196
Period size: 46 Copynumber: 4.4 Consensus size: 45
79279921 GATCCAATGC
79279931 CCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGACGCATGT
1 CCCAGACAT-GTCTTACACTGGCTATCATCTCA-AGCCGACGCATGT
* *
79279978 CCCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGACGCATGT
1 CCCAGACATGTCTTACACTGGCTAT-CATCTC-AAGCCGACGCATGT
* * * *
79280024 CCTAGACATGTCTTACACTAGC-ACTCGTCTCAATGCCGATGCCATGT
1 CCCAGACATGTCTTACACTGGCTA-TCATCTCAA-GCCGACG-CATGT
* * *** *
79280071 CCCAGACATGGTCTTACACTGGCTTTCATAATGTGGCCGATGCATGT
1 CCCAGACAT-GTCTTACACTGGCTATCAT-CTCAAGCCGACGCATGT
*
79280118 CCCAGCCATGTCTTACA
1 CCCAGACATGTCTTACA
79280135 ATAGCTCACA
Statistics
Matches: 131, Mismatches: 17, Indels: 19
0.78 0.10 0.11
Matches are distributed among these distances:
45 2 0.02
46 69 0.53
47 37 0.28
48 22 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (45 bp):
CCCAGACATGTCTTACACTGGCTATCATCTCAAGCCGACGCATGT
Found at i:79280118 original size:94 final size:92
Alignment explanation
Indices: 79279931--79280140 Score: 246
Period size: 94 Copynumber: 2.2 Consensus size: 92
79279921 GATCCAATGC
*
79279931 CCCAGACATGGTCTTACACTGGCTATCATCTCATAGCCGACGCATGTCCCAGACATGTCTTACAC
1 CCCAGACAT-GTCTTACACTAGCTATCATCTCATAGCCGACGCATGTCCCAGACATGTCTTACAC
* *
79279996 TGGCTTACATCTCGAGGTCGACGCATGT
65 TGGCTTACATATCGAGGCCGACGCATGT
* * *
79280024 CCTAGACATGTCTTACACTAGC-ACTCGTCTCA-ATGCCGATGCCATGTCCCAGACATGGTCTTA
1 CCCAGACATGTCTTACACTAGCTA-TCATCTCATA-GCCGACG-CATGTCCCAGACAT-GTCTTA
* * *
79280087 CACTGGCTTTCATAAT-GTGGCCGATGCATGT
62 CACTGGCTTACAT-ATCGAGGCCGACGCATGT
* *
79280118 CCCAGCCATGTCTTACAATAGCT
1 CCCAGACATGTCTTACACTAGCT
79280141 CACACAAGTG
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 2 0.02
92 25 0.25
93 22 0.22
94 49 0.49
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
CCCAGACATGTCTTACACTAGCTATCATCTCATAGCCGACGCATGTCCCAGACATGTCTTACACT
GGCTTACATATCGAGGCCGACGCATGT
Found at i:79287563 original size:46 final size:46
Alignment explanation
Indices: 79287476--79287690 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 46
79287466 GGTAAGGTGT
* *
79287476 CGATGCCATGTCCCAGACTTGGTCTTACACTGAC-TATCATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGTAGC
79287524 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGC
* * * * *
79287569 TGATGCATGTCCCAGACATGTC-TACACTAGCACT-CGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCGTA-GC
** * * * * *
79287614 CGATGCCATGTCATAGACATGGTTTTACACTGGCTTTCATAAT-GTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGTAGC
*
79287662 CGATGCATGTCCCAGCCATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
79287691 AGCATGAATA
Statistics
Matches: 136, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 14 0.10
45 31 0.23
46 40 0.29
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGTAGC
Found at i:79293617 original size:93 final size:93
Alignment explanation
Indices: 79293488--79293659 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79293478 CGCCCATAAG
* * *
79293488 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79293553 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
**
79293581 CGAACTCGGACTCAACTCAACGATTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
79293646 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
79293660 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:79293656 original size:46 final size:46
Alignment explanation
Indices: 79293481--79293656 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
79293471 TGTAACCCGC
* * * *
79293481 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
79293527 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
79293577 -C-TCA-CGAACTCGGACTCAACTCAACGATTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
79293620 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
79293657 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:79293675 original size:46 final size:46
Alignment explanation
Indices: 79293530--79293668 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
79293520 TTCGCATCCA
79293530 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * * *
79293578 TCA-CGAACTCGGACTCAACTCAACGATTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
79293623 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
79293669 CTAGTGACAT
Statistics
Matches: 73, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 27 0.37
47 29 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:79303962 original size:40 final size:40
Alignment explanation
Indices: 79303838--79304062 Score: 201
Period size: 40 Copynumber: 5.7 Consensus size: 40
79303828 TTGAATGCTG
* * * *
79303838 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ATTAAA
** * *
79303878 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATATTAA-A
* *
79303918 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
*
79303958 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGAT-ATTAAA
* * *
79303998 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
* * * *
79304037 ACCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
79304063 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 21, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
39 32 0.21
40 110 0.71
41 12 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATATTAAA
Found at i:79312725 original size:31 final size:31
Alignment explanation
Indices: 79312685--79312801 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
79312675 TTAGTCTTGA
*
79312685 CATAT-ACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTAGGCCGAAGCCTTTACATAAAT
*
79312715 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTACATAAAT
*
79312746 CATATCACTGGGCCGAAGCCTTTACATAAAT
1 CATATCACTAGGCCGAAGCCTTTACATAAAT
* *
79312777 CATATCACTGGGTCGAAGCCTTTAC
1 CATATCACTAGGCCGAAGCCTTTAC
79312802 TGTAAACAGT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTACATAAAT
Found at i:79313729 original size:27 final size:27
Alignment explanation
Indices: 79313699--79313871 Score: 181
Period size: 27 Copynumber: 6.4 Consensus size: 27
79313689 GGATATTTCT
** *
79313699 GTAATTTTGTAAATTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
* *
79313726 GTAATTTTACAAA-TTGAGGGTATTTCG
1 GTAATTTTACAAACTAG-GGGTATTTTG
* * * *
79313753 ATAATTTCACAAACTAGTGGTA-TTTC
1 GTAATTTTACAAACTAGGGGTATTTTG
79313779 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
79313806 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
* ** *
79313833 GTAATTCTATCCTAC-AGGGGTATTTTA
1 GTAATTTTA-CAAACTAGGGGTATTTTG
*
79313860 GTAATTTCACAA
1 GTAATTTTACAA
79313872 TCGAGGGTAA
Statistics
Matches: 120, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
26 24 0.20
27 91 0.76
28 5 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAACTAGGGGTATTTTG
Found at i:79313801 original size:53 final size:53
Alignment explanation
Indices: 79313713--79313830 Score: 157
Period size: 53 Copynumber: 2.2 Consensus size: 53
79313703 TTTTGTAAAT
* *
79313713 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAAC
1 TAGGGGTA-TTTCGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAAC
* * * *
79313767 TAGTGGTATTTCGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTCGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTCACAAAC
79313820 TAGGGGTATTT
1 TAGGGGTATTT
79313831 TGGTAATTCT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
53 47 0.84
54 9 0.16
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (53 bp):
TAGGGGTATTTCGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAAC
Found at i:79313880 original size:80 final size:80
Alignment explanation
Indices: 79313714--79313878 Score: 183
Period size: 80 Copynumber: 2.0 Consensus size: 80
79313704 TTTGTAAATT
* * *
79313714 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACTAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTA
* *
79313779 GTAATTTTACAAACT
66 GTAATTTCACAAACG
* * **
79313794 AGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTAC-AGGGGTAT
1 AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTC-A-CAAACTAGGGGTA-
*
79313856 TTTAGTAATTTCACAATCG
62 TTTAGTAATTTCACAAACG
79313875 AGGG
1 AGGG
79313879 TAAAACAGTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 3 0.04
80 44 0.62
81 24 0.34
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACTAGGGGTATTTA
GTAATTTCACAAACG
Found at i:79313930 original size:27 final size:27
Alignment explanation
Indices: 79313870--79314061 Score: 218
Period size: 27 Copynumber: 7.3 Consensus size: 27
79313860 GTAATTTCAC
** *
79313870 AATCGAGGGTAAAACAGTAA-TTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
79313896 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTATA
*
79313923 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
79313950 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
79313977 AATTGAGGGTAAAA--GTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
79314002 AATC--GGGTGAAACGGTAA-TTTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
* *
79314026 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
79314053 AATCGAGGG
1 AATCGAGGG
79314062 CATTTCAGTA
Statistics
Matches: 144, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
23 7 0.05
24 9 0.06
25 17 0.12
26 28 0.19
27 82 0.57
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:79316344 original size:31 final size:31
Alignment explanation
Indices: 79316304--79316442 Score: 233
Period size: 31 Copynumber: 4.5 Consensus size: 31
79316294 TGACATTTAT
*
79316304 TGGGCCGAAGCCTTTCCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
79316335 TGGGTCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
* *
79316366 TGGGCCGAAGCCTTTTTATAAATCATATCAT
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
*
79316397 TAGGCCGAAGCCTTTTCATAAATCATATCAC
1 TGGGCCGAAGCCTTTTCATAAATCATATCAC
79316428 TGGGCCGAAGCCTTT
1 TGGGCCGAAGCCTTT
79316443 ACTGTAAACA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.30
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTTCATAAATCATATCAC
Found at i:79316517 original size:42 final size:42
Alignment explanation
Indices: 79316470--79316557 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
79316460 CCTTAGGCCT
*
79316470 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
79316512 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
79316554 ATTT
1 ATTT
79316558 GCAGAGGCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33
Consensus pattern (42 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
Found at i:79316746 original size:25 final size:24
Alignment explanation
Indices: 79316703--79316774 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 24
79316693 GCCTCTTTTA
*
79316703 ATAACTGGGGCAAAGCCC-TTTCTG
1 ATAAATGGGGCAAAGCCCTTTTC-G
79316727 ATAAATGGGGACAAAGCCCTTTTCG
1 ATAAATGGGG-CAAAGCCCTTTTCG
*
79316752 GTAAACTGGGGCAAAGCCCTTTT
1 ATAAA-TGGGGCAAAGCCCTTTT
79316775 ATCATTTCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
24 9 0.21
25 25 0.58
26 9 0.21
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (24 bp):
ATAAATGGGGCAAAGCCCTTTTCG
Found at i:79317813 original size:27 final size:27
Alignment explanation
Indices: 79317764--79317913 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
79317754 GAAAGTCAAC
* ** *
79317764 GGTATTTTTGTAATTTTTTAAATTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
79317791 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * *
79317818 GGTATTTCGATAATTTCACAAACTAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
* *
79317845 GGTATTTCGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
79317872 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
79317899 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
79317914 CTATCCTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 104 0.96
28 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:79317929 original size:54 final size:53
Alignment explanation
Indices: 79317787--79317946 Score: 176
Period size: 54 Copynumber: 3.0 Consensus size: 53
79317777 TTTTTTAAAT
** *
79317787 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAA-CAAGGGTATTTCGGTAATTTCACAAAC
* * * * * *
79317841 TAGTGGTATTTCGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAAC
1 TAGGGGTATTTTGGTAATTTTACAAAC-AAGGGTATTTCGGTAATTTCACAAAC
* ** *
79317895 TAGGGGTATTTTGGTAATTCTATCCTACAAGGGTATTTCAGTAATTTCACAA
1 TAGGGGTATTTTGGTAATTTTA-CAAACAAGGGTATTTCGGTAATTTCACAA
79317947 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
54 82 0.96
55 3 0.04
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
TAGGGGTATTTTGGTAATTTTACAAACAAGGGTATTTCGGTAATTTCACAAAC
Found at i:79317930 original size:81 final size:81
Alignment explanation
Indices: 79317787--79317946 Score: 193
Period size: 81 Copynumber: 2.0 Consensus size: 81
79317777 TTTTTTAAAT
* *
79317787 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACTAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACAAGTGGTATTT
*
79317852 C-GATAATTTTACAAAC
66 CAG-TAATTTCACAAAC
* * **
79317868 TAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTACAAG-GGTA
1 TAGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTC-A-CAAACAAGTGGTA
79317930 TTTCAGTAATTTCACAA
63 TTTCAGTAATTTCACAA
79317947 TCGAGGGTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
80 3 0.04
81 57 0.84
82 8 0.12
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACAAGTGGTATTT
CAGTAATTTCACAAAC
Found at i:79317932 original size:27 final size:27
Alignment explanation
Indices: 79317678--79317916 Score: 133
Period size: 27 Copynumber: 8.8 Consensus size: 27
79317668 TTCAACCTAC
* *
79317678 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTCTACAAACT
* * * ** *
79317705 AAAGGTATTTTAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTCTACAAACT
* * * * *
79317732 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTCTACAAACT
* * * ** *
79317760 CAACGGTATTTTTGTAATTTTTTAAATT
1 -AAGGGTATTTTGGTAATTCTACAAACT
* * *
79317788 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTCTACAAACT
* * *
79317815 GAGGGTATTTCGATAATT-TCACAAACT
1 AAGGGTATTTTGGTAATTCT-ACAAACT
* * *
79317842 -AGTGGTATTTCGATAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTCTACAAACT
* *
79317869 AGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTCTACAAACT
*
79317896 AGGGGTATTTTGGTAATTCTA
1 AAGGGTATTTTGGTAATTCTA
79317917 TCCTACAAGG
Statistics
Matches: 171, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 3 0.02
27 137 0.80
28 19 0.11
29 12 0.07
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTCTACAAACT
Found at i:79317982 original size:27 final size:27
Alignment explanation
Indices: 79317945--79318142 Score: 290
Period size: 27 Copynumber: 7.3 Consensus size: 27
79317935 GTAATTTCAC
* *
79317945 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
79317972 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
79317999 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
79318026 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
79318053 AATCGAGGGTAAAATAGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
79318080 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
79318107 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
79318134 AATCGAGGG
1 AATCGAGGG
79318143 CATTTCAGTA
Statistics
Matches: 158, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
26 1 0.01
27 156 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:79319961 original size:21 final size:21
Alignment explanation
Indices: 79319922--79319961 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
79319912 GGACTAAATC
*
79319922 GAGAACTTTGAAAAATTTCAT
1 GAGAACTTAGAAAAATTTCAT
* *
79319943 GAGAACTTAGGAAATTTTC
1 GAGAACTTAGAAAAATTTC
79319962 CCATGAAACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (21 bp):
GAGAACTTAGAAAAATTTCAT
Found at i:79322012 original size:50 final size:48
Alignment explanation
Indices: 79321949--79322123 Score: 191
Period size: 50 Copynumber: 3.7 Consensus size: 48
79321939 TGAAATCGAG
*
79321949 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTCACATATCCGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-CTCT-ACATCTCCGT
* *
79321999 GCCGATGCCATGTCCTAGACATGGTCTTACACTA--ATACATCT-CGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACTCTACATCTCCGT
* * **
79322044 AGCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTCAAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTACATCTCCGT
* *
79322091 GCCAATGCCATGTCTCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
79322124 GGCTCACAAA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
44 11 0.10
45 17 0.16
46 22 0.20
47 15 0.14
48 10 0.09
50 33 0.31
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACTCTACATCTCCGT
Found at i:79322112 original size:92 final size:95
Alignment explanation
Indices: 79321949--79322123 Score: 241
Period size: 92 Copynumber: 1.9 Consensus size: 95
79321939 TGAAATCGAG
** *
79321949 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTCACATATCCGTGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCT-ACATATCAATGCCAATGCCATGTCC
79322014 TAGACATGGTCTTACACTAATACATCTCGTA
65 TAGACATGGTCTTACACTAATACATCTCGTA
* * * *
79322045 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGCCAATGCCATGT-CT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTACATATCAATGCCAATGCCATGTCCT
79322106 CAGACATGGTCTTACACT
66 -AGACATGGTCTTACACT
79322124 GGCTCACAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
91 2 0.03
92 34 0.48
94 15 0.21
95 13 0.18
96 7 0.10
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACCTCTACATATCAATGCCAATGCCATGTCCT
AGACATGGTCTTACACTAATACATCTCGTA
Found at i:79325180 original size:28 final size:28
Alignment explanation
Indices: 79325123--79325190 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
79325113 TATTTCACAT
* *
79325123 ACTAAGTGTCTTTCTCAATATCTCCCAC
1 ACTAAGTGCCATTCTCAATATCTCCCAC
* **
79325151 ACTAAGTGCCATTCTCAATATTTCGTAC
1 ACTAAGTGCCATTCTCAATATCTCCCAC
*
79325179 ACTGAGTGCCAT
1 ACTAAGTGCCAT
79325191 ATTTGATTGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (28 bp):
ACTAAGTGCCATTCTCAATATCTCCCAC
Found at i:79331826 original size:15 final size:15
Alignment explanation
Indices: 79331806--79331855 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
79331796 TAAATCACGA
*
79331806 AAATTTCACACATAG
1 AAATTTCACACATAT
79331821 AAATTTCACACATAT
1 AAATTTCACACATAT
79331836 AAATTTCACACATAT
1 AAATTTCACACATAT
79331851 AAATT
1 AAATT
79331856 AAATCACGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.32
Consensus pattern (15 bp):
AAATTTCACACATAT
Found at i:79331873 original size:30 final size:29
Alignment explanation
Indices: 79331792--79331870 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 29
79331782 TTAAATGACA
79331792 AAATTAAATCACGAAAATTTCACACATAG
1 AAATTAAATCACGAAAATTTCACACATAG
** * *
79331821 AAATTTCA-CACATATAAATTTCACACATAT
1 AAATTAAATCAC-GA-AAATTTCACACATAG
79331851 AAATTAAATCACGAAAATTT
1 AAATTAAATCACGAAAATTT
79331871 TCATTTTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
28 3 0.08
29 13 0.32
30 21 0.52
31 3 0.08
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (29 bp):
AAATTAAATCACGAAAATTTCACACATAG
Found at i:79338310 original size:28 final size:28
Alignment explanation
Indices: 79338247--79338344 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
79338237 ATATTAATTC
*
79338247 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
79338274 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
79338302 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
79338331 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79338345 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:79342500 original size:14 final size:15
Alignment explanation
Indices: 79342483--79342511 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79342473 TCATGAAAAT
79342483 TTCACACAT-ATAAA
1 TTCACACATAATAAA
79342497 TTCACACATAATAAA
1 TTCACACATAATAAA
79342512 CACAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:79343800 original size:27 final size:27
Alignment explanation
Indices: 79343762--79343850 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
79343752 CAAAACAGTC
* * * *
79343762 ATTTTACCCTACAGGGGTATGACAATC
1 ATTTTACACTACAAGGGTATTACAATA
79343789 ATTTTACACTACAAGGGTATTTA-AATA
1 ATTTTACACTACAAGGGTA-TTACAATA
*
79343816 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTACAATA
79343843 ATTTTACA
1 ATTTTACA
79343851 AATCGGAGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTACAATA
Found at i:79343861 original size:27 final size:27
Alignment explanation
Indices: 79343802--79344168 Score: 417
Period size: 27 Copynumber: 13.7 Consensus size: 27
79343792 TTACACTACA
** * *
79343802 AGGGTATTTAAATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
79343829 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
79343856 -GAGGTATTTAGGTAAATTTACAAATCG
1 AG-GGTATTTCGATAATTTTACAAATCG
* *
79343883 AGCGTATTTCGACAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
79343910 AGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79343937 AAGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
79343964 AGGGTATTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
79343991 AGGGTGTTTCGATAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79344018 GGGGTATTTCGATAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
79344045 AGGGTATTTCGATAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
79344071 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
79344098 AGGATATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
79344124 AGGGTATTTC-AGTAATTTTACAAATC-
1 AGGGTATTTCGA-TAATTTTACAAATCG
79344150 AGGGGTATTTCGATAATTT
1 A-GGGTATTTCGATAATTT
79344169 CTCTTTATTA
Statistics
Matches: 292, Mismatches: 38, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
26 51 0.17
27 236 0.81
28 5 0.02
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:79344529 original size:28 final size:28
Alignment explanation
Indices: 79344498--79344576 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
79344488 CCCAATCTCG
*
79344498 TTCACATGGCCCATCAGGCCCAATAACA
1 TTCATATGGCCCATCAGGCCCAATAACA
* *
79344526 TTCATATGACCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATAACA
79344554 TTCATATGGCCCATCAGGCCCAA
1 TTCATATGGCCCATCAGGCCCAA
79344577 CTACTTCCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.30, C:0.35, G:0.14, T:0.20
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATAACA
Found at i:79350647 original size:39 final size:39
Alignment explanation
Indices: 79350515--79350768 Score: 234
Period size: 39 Copynumber: 6.5 Consensus size: 39
79350505 TTGAATGCTG
* * * *
79350515 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
**
79350555 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG-A-TAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTACTAAA
*
79350592 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
79350631 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
*
79350671 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* * * ** * *
79350710 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAA
*
79350750 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79350769 TACGTGATTT
Statistics
Matches: 180, Mismatches: 24, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
37 21 0.12
38 22 0.12
39 69 0.38
40 60 0.33
41 8 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:79350753 original size:79 final size:79
Alignment explanation
Indices: 79350588--79350768 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 79
79350578 TTGTGCGAGA
* * *
79350588 TAAATTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAA-TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGC
** * *
79350652 ATTCGTGCGAGTTAT
65 ATTCGAACGAGTGAC
* *
79350667 TAAATCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGC
*
79350731 ATTTGAACGAG-GAGC
65 ATTCGAACGAGTGA-C
* *
79350746 TATATCC-GGTTAAATCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
79350769 TACGTGATTT
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
78 36 0.41
79 51 0.59
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCA
TTCGAACGAGTGAC
Found at i:79358559 original size:39 final size:40
Alignment explanation
Indices: 79358424--79358647 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
79358414 TTGAATGCTG
* * * * *
79358424 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
79358464 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79358503 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
79358543 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
79358583 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
79358622 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
79358648 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 67 0.43
40 82 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:79358564 original size:79 final size:78
Alignment explanation
Indices: 79358424--79358647 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
79358414 TTGAATGCTG
* * * * *
79358424 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
79358488 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
79358503 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
79358568 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
79358583 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
79358648 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 10 0.08
79 81 0.66
80 24 0.20
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:79358665 original size:79 final size:79
Alignment explanation
Indices: 79358504--79358680 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
79358494 AGATACAAAT
* * * *
79358504 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
79358569 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
79358583 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
79358647 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
79358662 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
79358681 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:79368788 original size:21 final size:21
Alignment explanation
Indices: 79368764--79368820 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
79368754 TTTAAATGAA
79368764 TAAATATAAAAGTAATAATAT
1 TAAATATAAAAGTAATAATAT
* * *
79368785 TAAACAAAAAAGTATTAATAT
1 TAAATATAAAAGTAATAATAT
*
79368806 T-AATTTAAAA-TAATA
1 TAAATATAAAAGTAATA
79368821 TTATCAAAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 4 0.14
20 6 0.21
21 19 0.66
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (21 bp):
TAAATATAAAAGTAATAATAT
Found at i:79368836 original size:15 final size:16
Alignment explanation
Indices: 79368812--79368844 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
79368802 ATATTAATTT
79368812 AAAATAATATTATCAA
1 AAAATAATATTATCAA
*
79368828 AAAAT-ATATTATTAA
1 AAAATAATATTATCAA
79368843 AA
1 AA
79368845 GTACTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAATAATATTATCAA
Found at i:79369884 original size:28 final size:28
Alignment explanation
Indices: 79369840--79369897 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
79369830 GCAGCGTCAA
79369840 AGTTGATTTTAACTGTTAAACTAGTTGG
1 AGTTGATTTTAACTGTTAAACTAGTTGG
*
79369868 AGTTGATTTTAAGTGTTAAACTAGTTGG
1 AGTTGATTTTAACTGTTAAACTAGTTGG
79369896 AG
1 AG
79369898 CTATCCATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.41
Consensus pattern (28 bp):
AGTTGATTTTAACTGTTAAACTAGTTGG
Found at i:79377977 original size:24 final size:24
Alignment explanation
Indices: 79377909--79377970 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 24
79377899 GTAAAATAAA
79377909 TTAA-ATATAAGATAAATTTCTTAATT
1 TTAAGATATAA-ATAAATTT-TT-ATT
79377935 TTAAGATATAAATAAATTTTTATT
1 TTAAGATATAAATAAATTTTTATT
*
79377959 TTAATA-ATAAAT
1 TTAAGATATAAAT
79377971 TATATTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 6 0.18
24 8 0.24
25 2 0.06
26 12 0.35
27 6 0.18
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (24 bp):
TTAAGATATAAATAAATTTTTATT
Found at i:79378236 original size:16 final size:16
Alignment explanation
Indices: 79378208--79378241 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
79378198 AAATTAAAAA
79378208 TAATTTATTATTTACTT
1 TAATTTATTATTTA-TT
79378225 TAATTT-TTATTTATT
1 TAATTTATTATTTATT
79378240 TA
1 TA
79378242 TAAAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 7 0.41
17 6 0.35
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TAATTTATTATTTATT
Found at i:79379017 original size:17 final size:17
Alignment explanation
Indices: 79378995--79379035 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
79378985 ATCAATGGAT
*
79378995 ATAAACTTATTTTTATC
1 ATAAACTTACTTTTATC
79379012 ATAAACTTACTTTTATC
1 ATAAACTTACTTTTATC
79379029 ATAAACT
1 ATAAACT
79379036 ATTATGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAAACTTACTTTTATC
Found at i:79381909 original size:17 final size:18
Alignment explanation
Indices: 79381887--79381921 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79381877 ACTTCTTCGA
79381887 ATTTTA-TTGAATCAAAT
1 ATTTTATTTGAATCAAAT
*
79381904 ATTTTATTTTAATCAAAT
1 ATTTTATTTGAATCAAAT
79381922 TTGTGCTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (18 bp):
ATTTTATTTGAATCAAAT
Found at i:79383164 original size:62 final size:62
Alignment explanation
Indices: 79383098--79383309 Score: 280
Period size: 63 Copynumber: 3.4 Consensus size: 62
79383088 CAACCAGAGG
*
79383098 CACGGGCGCGTGCTCAGGCTGTGTAACTCACTGTTTGTGCTTAAAAACTACATGGCCAGGGA
1 CACGGGCGTGTGCTCAGGCTGTGTAACTCACTGTTTGTGCTTAAAAACTACATGGCCAGGGA
* * *
79383160 CACGGACGTGTGCTCGGGCTATGTAACTCACTGTTTGTGCTTAAAAAACTACATGGCCAGGGA
1 CACGGGCGTGTGCTCAGGCTGTGTAACTCACTGTTTGTGCTT-AAAAACTACATGGCCAGGGA
* * * * * * *
79383223 CACAGGCGTGTGCCCAGGCCGTGTAACTCACTGTTTGTGCTTAAAAACCATACGGCCAAGGCA
1 CACGGGCGTGTGCTCAGGCTGTGTAACTCACTGTTTGTGCTTAAAAACTACATGGCC-AGGGA
* * *
79383286 CACGGGTGTGTGCCCAGGCCGTGT
1 CACGGGCGTGTGCTCAGGCTGTGT
79383310 GGCAGGATAT
Statistics
Matches: 132, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
62 50 0.38
63 82 0.62
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (62 bp):
CACGGGCGTGTGCTCAGGCTGTGTAACTCACTGTTTGTGCTTAAAAACTACATGGCCAGGGA
Found at i:79390413 original size:17 final size:17
Alignment explanation
Indices: 79390365--79390413 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 17
79390355 TATTAAAAAT
79390365 ATATACATAATATAAAG
1 ATATACATAATATAAAG
* * *
79390382 TTAAAAATAATATATAAAG
1 ATATACAT-A-ATATAAAG
79390401 ATATACATAATAT
1 ATATACATAATAT
79390414 CTATTAAAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
17 9 0.38
18 2 0.08
19 13 0.54
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (17 bp):
ATATACATAATATAAAG
Found at i:79390666 original size:16 final size:16
Alignment explanation
Indices: 79390645--79390696 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
79390635 TAATAAATAA
79390645 ATAAATA-ATACTATAT
1 ATAAATATATAC-ATAT
79390661 ATAAATATATACATAT
1 ATAAATATATACATAT
* * * *
79390677 ACATATACATACACAT
1 ATAAATATATACATAT
79390693 ATAA
1 ATAA
79390697 TAAAATATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAATATATACATAT
Found at i:79390676 original size:6 final size:6
Alignment explanation
Indices: 79390667--79390707 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
79390657 ATATATAAAT
* *
79390667 ATATAC ATATAC ATATAC ATACAC ATATA- ATA-AA ATATAC A
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC ATATAC A
79390708 CTAATATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
4 1 0.03
5 6 0.20
6 23 0.77
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (6 bp):
ATATAC
Found at i:79390682 original size:20 final size:20
Alignment explanation
Indices: 79390641--79390683 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
79390631 ATAATAATAA
*
79390641 ATAAATAAATAATACTATAT
1 ATAAATAAATAATACTACAT
*
79390661 ATAAATATATACATA-TACAT
1 ATAAATAAATA-ATACTACAT
79390681 ATA
1 ATA
79390684 CATACACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAATAAATAATACTACAT
Found at i:79390706 original size:18 final size:18
Alignment explanation
Indices: 79390656--79390708 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
79390646 TAAATAATAC
* *
79390656 TATATATAAATATATACA
1 TATACATAAATATACACA
* *
79390674 TATACATATACATACACA
1 TATACATAAATATACACA
79390692 TATA-ATAAAATATACAC
1 TATACAT-AAATATACAC
79390709 TAATATTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (18 bp):
TATACATAAATATACACA
Found at i:79391545 original size:27 final size:27
Alignment explanation
Indices: 79391485--79391546 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
79391475 ATATTTTTTG
*
79391485 TTTTTTAATACTTTTATATATAACTGA
1 TTTTTTTATACTTTTATATATAACTGA
79391512 TTTTTTTATACTTTTATATATAACTGA
1 TTTTTTTATACTTTTATATATAACTGA
79391539 TTTTTTTA
1 TTTTTTTA
79391547 AGGAAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (27 bp):
TTTTTTTATACTTTTATATATAACTGA
Found at i:79392826 original size:89 final size:90
Alignment explanation
Indices: 79392629--79392874 Score: 331
Period size: 89 Copynumber: 2.8 Consensus size: 90
79392619 TTCTTTACTC
* * * * *
79392629 AGCATGTGATCCTGA-GCTCAACTCACTTCTCGCAATATGAGTTGACTCTTTAAAAACAGACATT
1 AGCATGTGA-GCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATT
*
79392693 --AAAAATAGAAATTGAAAATAGCTCT
64 GAAAAAATAGAAATTGAAAATACCTCT
* ** *
79392718 -GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGA
1 AGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGA
79392782 AAAAATAGAAATTGAAAATACCT-T
66 AAAAATAGAAATTGAAAATACCTCT
*
79392806 AGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAATAGAAATTG
1 AGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTG
79392871 AAAA
65 AAAA
79392875 TACCTCAGCT
Statistics
Matches: 137, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
87 16 0.12
88 37 0.27
89 70 0.51
90 14 0.10
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (90 bp):
AGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGA
AAAAATAGAAATTGAAAATACCTCT
Found at i:79392909 original size:73 final size:75
Alignment explanation
Indices: 79392784--79393332 Score: 244
Period size: 77 Copynumber: 7.0 Consensus size: 75
79392774 TAAATTGAAA
* * *
79392784 AAATAGAAATTGAAAATACCTTAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAATAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
*
79392849 GATTTTTGAC
66 AATTTTTGAC
79392859 AAATAGAAATTGAAAATACCTCAGC-T-TGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAATAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
79392922 AATTTTTGAAAC
66 AATTTTTG--AC
* ** * ** ** ** * *
79392934 ATAAATTGAAGAACAGAAATTAAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCACAA
1 --AAATAG-A-AATTGAAA--ATACCT-CAGC-ATGTGACCTGAGGCTCAACTCACCTCTCACAA
* *
79392999 TATGAGCTGA-TTTTGAC
58 TATGAGTTAATTTTTGAC
* * *** * ** ** * *
79393016 GAACAGAAATTGAAAA-ACAGAAATTGAAAAT-ACCTCAGCATGTGAGCGGAGGCTCAACTCACC
1 AAATAGAAATTGAAAATAC-CTCA--GCATGTGACCT--G-A---G-GCTCA-ACTC-AC-C-T-
* *
79393079 TCTCGCAATATGAGTTGATTTTTTTGA-
51 -CTCACAATATGAGTT-A-ATTTTTGAC
* * *
79393106 AAGACAGAAATTGAAAATTACCTCAGCATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ATAGAAATTGAAAA-TACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
*
79393169 TTGATTTTTTTTGA-
64 TT-A--ATTTTTGAC
* * *
79393183 AAGACAGAAATTGAAAATTACCTCAGCATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ATAGAAATTGAAAA-TACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAG
*
79393246 TTGATTTTTTTTGA-
64 TT-A--ATTTTTGAC
* * * * *
79393260 AAGACAGAAATTGAAAATACCTCAAC-T-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AA-ATAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGT
79393323 TAATTTTTGA
65 TAATTTTTGA
79393333 AACAGAAATA
Statistics
Matches: 383, Mismatches: 54, Indels: 76
0.75 0.11 0.15
Matches are distributed among these distances:
73 49 0.13
74 2 0.01
75 31 0.08
76 63 0.16
77 109 0.28
78 8 0.02
79 8 0.02
80 5 0.01
81 7 0.02
82 10 0.03
83 4 0.01
84 7 0.02
85 36 0.09
86 1 0.00
87 1 0.00
88 13 0.03
89 2 0.01
90 4 0.01
91 20 0.05
92 1 0.00
93 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (75 bp):
AAATAGAAATTGAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
AATTTTTGAC
Found at i:79393012 original size:85 final size:85
Alignment explanation
Indices: 79392854--79393122 Score: 319
Period size: 85 Copynumber: 3.1 Consensus size: 85
79392844 GAGTTGATTT
* * * *
79392854 TTGACAAATAGAAATTGAAAATACCTCAGCTTGACCTGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATG-TCTGAGGCTCAACTCACCTCTCACAATATGA
* *
79392919 GTTAATTTTTGA-AACATAAA
65 GTTGATTTTTGACAACAGAAA
* *
79392939 TTGAAGAACAGAAATT-AAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCACAATATG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCATGTC-TGAGGCTCAACTCACCTCTCACAATATG
*
79393003 AGCTGA-TTTTGACGAACAGAAA
64 AGTTGATTTTTGAC-AACAGAAA
* *
79393025 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCGGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT---CTGAGGCTCAACTCACCTCTCACAATAT
*
79393090 GAGTTGATTTTTTTGAAAGACAGAAA
63 GAGTTGA--TTTTTGACA-ACAGAAA
79393116 TTGAAAA
1 TTGAAAA
79393123 TTACCTCAGC
Statistics
Matches: 157, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
84 11 0.07
85 55 0.35
86 34 0.22
87 4 0.03
88 31 0.20
89 1 0.01
90 1 0.01
91 20 0.13
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (85 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTGAGGCTCAACTCACCTCTCACAATATGAG
TTGATTTTTGACAACAGAAA
Found at i:79393034 original size:14 final size:14
Alignment explanation
Indices: 79393017--79393045 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
79393007 GATTTTGACG
79393017 AACAGAAATTGAAA
1 AACAGAAATTGAAA
79393031 AACAGAAATTGAAA
1 AACAGAAATTGAAA
79393045 A
1 A
79393046 TACCTCAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:79393082 original size:246 final size:240
Alignment explanation
Indices: 79392730--79393276 Score: 755
Period size: 246 Copynumber: 2.2 Consensus size: 240
79392720 ACGTGAGCCA
* *
79392730 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAAAATAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAACAGAAATTGAAAAAACAGAAATT
* *
79392795 GAAAATACCTTAGCATGTGAGCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAC
65 GAAAATACCTCAGCATGTGAGCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-
* *
79392859 AA-ATAGAAATTGAAAA-TACCTCAGCTTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
129 AAGACAGAAATTGAAAATTACCTCAGCATGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
79392922 AATTTTTGAAACATAAATTG-AAGAACAGAAATT-AAAATTACCTCAACATGTCTTG
194 AATTTTT------T---TTGAAAG-ACAGAAATTGAAAATTACCTCAACATGTCTTG
* * *
79392977 AGGCTCAACTCACCTCTCACAATATGAGCTGATTTTGACGAACAGAAATTG-AAAAACAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAACAGAAATTGAAAAAACAGAAATT
79393041 GAAAATACCTCAGCATGTGAGCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
65 GAAAATACCTCAGCATGTGAGCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
* * *
79393106 AAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
129 AAGACAGAAATTGAAAATTACCTCAGCATGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
* *
79393171 GATTTTTTTTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTG
194 AATTTTTTTTGAAAGACAGAAATTGAAAATTACCTCAACATGTCTTG
79393218 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTGAAA-ACAGAAATTGAAAA
79393277 TACCTCAACT
Statistics
Matches: 270, Mismatches: 17, Indels: 27
0.86 0.05 0.09
Matches are distributed among these distances:
240 12 0.04
241 54 0.20
243 1 0.00
244 1 0.00
245 16 0.06
246 75 0.28
247 42 0.16
248 20 0.07
249 49 0.18
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (240 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTGAAAAAACAGAAATTG
AAAATACCTCAGCATGTGAGCGGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
GACAGAAATTGAAAATTACCTCAGCATGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTAA
TTTTTTTTGAAAGACAGAAATTGAAAATTACCTCAACATGTCTTG
Found at i:79393119 original size:77 final size:77
Alignment explanation
Indices: 79393025--79393330 Score: 512
Period size: 77 Copynumber: 4.0 Consensus size: 77
79393015 CGAACAGAAA
* *
79393025 TTGAAAAACAGAAATTGAAAA-TACCTCAGCATGTGAGC-GGAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGT---CTTGAGGCTCAACTCACCTCTCGCAAT
79393088 ATGAGTTGA-TTTTT
63 ATGAGTTGATTTTTT
79393102 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
79393167 AGTTGATTTTTT
66 AGTTGATTTTTT
79393179 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
79393244 AGTTGATTTTTT
66 AGTTGATTTTTT
* *
79393256 TTGAAAGACAGAAATTGAAAA-TACCTCAACTTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
79393320 AGTTAATTTTT
66 AGTTGATTTTT
79393331 GAAACAGAAA
Statistics
Matches: 221, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
75 1 0.00
76 84 0.38
77 123 0.56
78 13 0.06
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:79393238 original size:153 final size:150
Alignment explanation
Indices: 79392788--79393330 Score: 596
Period size: 153 Copynumber: 3.4 Consensus size: 150
79392778 TTGAAAAAAT
* *
79392788 AGAAATTGAAAATACCTTAGCATGTGAGC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
1 AGAAATTGAAAATACCTCAACATGT---CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
79392851 --TTTTTGACAAATAGAAATTGAAAATACCTCAGCTTGACCTGAGGCTCAACTCACCTCTCACAA
63 TTTTTTTGA-AAACAGAAATTGAAAATACCTCAGCATG-TCTGAGGCTCAACTCACCTCTCGCAA
*
79392914 TATGAGTTAATTTTTGAAACATAAATTG-AAGAAC
126 TATGAGTTGATTTTT------T---TTGAAAG-AC
* *
79392948 AGAAATT-AAAATTACCTCAACATGTCTTGAGGCTCAACTCACCTCTCACAATATGAGCTGATTT
1 AGAAATTGAAAA-TACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
** *
79393012 TGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTGAGCGGAGGCTCAACTCA
65 T----------TTTTG-AAAACAGAAATTGAAAATACCTCAGCATGT---CTGAGGCTCAACTCA
79393077 CCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGAC
116 CCTCTCGCAATATGAGTTGATTTTTTTTGAAAGAC
*
79393111 AGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAA-TACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
79393176 TTTTTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCACCTCTCGCAAT
65 TTTTTGAAA-ACAGAAATTGAAAA-TACCTCAGCATGTC-TGAGGCTCAACTCACCTCTCGCAAT
79393241 ATGAGTTGATTTTTTTTGAAAGAC
127 ATGAGTTGATTTTTTTTGAAAGAC
* *
79393265 AGAAATTGAAAATACCTCAACTTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 AGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
79393330 T
66 T
79393331 GAAACAGAAA
Statistics
Matches: 337, Mismatches: 21, Indels: 57
0.81 0.05 0.14
Matches are distributed among these distances:
152 1 0.00
153 87 0.26
154 43 0.13
155 13 0.04
157 1 0.00
158 32 0.09
159 4 0.01
160 18 0.05
161 1 0.00
163 12 0.04
164 58 0.17
166 1 0.00
171 29 0.09
172 5 0.01
173 32 0.09
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (150 bp):
AGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTGAAAGAC
Found at i:79401545 original size:4 final size:4
Alignment explanation
Indices: 79401503--79401534 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
79401493 ATGTATATGC
*
79401503 AATG AATG AATG AATG AATG AATG AATA AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG
79401535 TCAAATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.22, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:79405916 original size:19 final size:19
Alignment explanation
Indices: 79405873--79405916 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
79405863 AGTAGTGTTA
*
79405873 AAATATATACATAATATAT
1 AAATATATACATAATAAAT
*
79405892 ACATATATACAT-ATAAAAT
1 AAATATATACATAAT-AAAT
79405911 AAATAT
1 AAATAT
79405917 TGGAAACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATATATACATAATAAAT
Found at i:79405988 original size:26 final size:28
Alignment explanation
Indices: 79405945--79406000 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
79405935 ACATATATGA
*
79405945 AAAATATATACATAATAATA-TTAAAAT
1 AAAATATATACATAATAATAGTGAAAAT
* *
79405972 AAAATA-ATACGTGATAATAGTGAAAAT
1 AAAATATATACATAATAATAGTGAAAAT
79405999 AA
1 AA
79406001 TAGGTATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAATATATACATAATAATAGTGAAAAT
Found at i:79406686 original size:21 final size:20
Alignment explanation
Indices: 79406652--79406735 Score: 60
Period size: 21 Copynumber: 3.9 Consensus size: 20
79406642 AGAAATATAC
79406652 TAATAATGATAATAATAATAG
1 TAATAAT-ATAATAATAATAG
*
79406673 TAATAATATAAATATTATATATG
1 TAATAATAT-AATAATA-ATA-G
* * *
79406696 CAAAAAAATATAATAATAACAG
1 --TAATAATATAATAATAATAG
*
79406718 TAAATAACATAATAATAA
1 T-AATAATATAATAATAA
79406736 AAAATAGAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
20 2 0.04
21 27 0.55
22 4 0.08
23 3 0.06
24 6 0.12
25 7 0.14
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.31
Consensus pattern (20 bp):
TAATAATATAATAATAATAG
Found at i:79408621 original size:17 final size:17
Alignment explanation
Indices: 79408599--79408633 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
79408589 TTGATTTTTG
*
79408599 AAAAATATAAATTGAAA
1 AAAAATAGAAATTGAAA
79408616 AAAAATAGAAATTGAAA
1 AAAAATAGAAATTGAAA
79408633 A
1 A
79408634 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (17 bp):
AAAAATAGAAATTGAAA
Found at i:79408722 original size:13 final size:14
Alignment explanation
Indices: 79408688--79408722 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
79408678 GTTGATTTTT
*
79408688 TTGAAAAATATAAA
1 TTGAAAAACATAAA
79408702 TTGAAAAACATAAA
1 TTGAAAAACATAAA
79408716 TTGAAAA
1 TTGAAAA
79408723 TGAAAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.26
Consensus pattern (14 bp):
TTGAAAAACATAAA
Found at i:79408774 original size:95 final size:92
Alignment explanation
Indices: 79408560--79408869 Score: 474
Period size: 95 Copynumber: 3.4 Consensus size: 92
79408550 CATGTGACCC
79408560 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAA-A-AAAT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACATAAAT
*
79408622 AGAAATTGAAAATACCTCAGCGTGTCCT
66 TGAAA-TGAAAATACCTCAGCGTGTCCT
79408650 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAACATAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAAAACATAA
*
79408715 ATTGAAAATGAAAATACCTCAGTGTGTCCT
64 ATTG-AAATGAAAATACCTCAGCGTGTCCT
* * *
79408745 GAGGCTCAACTCATCTCTTGTAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACATAAA-
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACATAAAT
*
79408809 T----TGAAAATACATCAGCGTGTCCT
66 TGAAATGAAAATACCTCAGCGTGTCCT
79408832 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79408870 TGTTTGAAAA
Statistics
Matches: 204, Mismatches: 10, Indels: 15
0.89 0.04 0.07
Matches are distributed among these distances:
87 55 0.27
90 33 0.16
92 21 0.10
93 35 0.17
94 1 0.00
95 56 0.27
96 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (92 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACATAAAT
TGAAATGAAAATACCTCAGCGTGTCCT
Found at i:79408820 original size:15 final size:14
Alignment explanation
Indices: 79408781--79408820 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
79408771 GAGTTGATTT
*
79408781 TTGAAAAATATAAA
1 TTGAAAAACATAAA
79408795 TTGAAAAACATAAA
1 TTGAAAAACATAAA
79408809 TTGAAAATACAT
1 TTGAAAA-ACAT
79408821 CAGCGTGTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.60, C:0.05, G:0.07, T:0.28
Consensus pattern (14 bp):
TTGAAAAACATAAA
Found at i:79408862 original size:87 final size:87
Alignment explanation
Indices: 79408379--79408869 Score: 494
Period size: 89 Copynumber: 5.5 Consensus size: 87
79408369 CGGCATGTGA
* * * * *
79408379 TCCTGA-GCTCAACTCACTTCTCGCAATATGAGTTAACTCTTTT-AAAAACAGACATT-AAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTTGAAAAATATAAATTGAAAAAC
* *
79408441 AAAAATTGAAAATAGCTCAACGCGTG
64 ATAAATTGAAAATACCTC-A-GCGTG
* * * * ** *
79408467 AGCC-AAGGCTCAACTCACCTCTCACAATATGAGTTGGTTTCTTTG-AACCT-T-AATTTAAAAA
1 -TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-GATT-TTTGAAAAATATAAATTGAAAAA
* ** *
79408528 GCAGATTTTAAAAATACCTC-GACATGTG
63 -CATAAATTGAAAATACCTCAG-C--GTG
* * *
79408556 ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAAACA
79408621 TAGAAATTGAAAATACCTCAGCGTG
65 T--AAATTGAAAATACCTCAGCGTG
79408646 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATATAAATTGAAAAAC
*
79408711 ATAAATTGAAAATGAAAATACCTCAGTGTG
64 ATAAA-T-----TGAAAATACCTCAGCGTG
* * *
79408741 TCCTGAGGCTCAACTCATCTCTTGTAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACAT
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACAT
*
79408806 AAATTGAAAATACATCAGCGTG
66 AAATTGAAAATACCTCAGCGTG
79408828 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
79408870 TGTTTGAAAA
Statistics
Matches: 337, Mismatches: 40, Indels: 52
0.79 0.09 0.12
Matches are distributed among these distances:
86 1 0.00
87 63 0.19
88 15 0.04
89 84 0.25
90 44 0.13
91 12 0.04
92 35 0.10
93 32 0.09
95 51 0.15
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (87 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAACAT
AAATTGAAAATACCTCAGCGTG
Found at i:79408878 original size:185 final size:184
Alignment explanation
Indices: 79408560--79408893 Score: 546
Period size: 185 Copynumber: 1.8 Consensus size: 184
79408550 CATGTGACCC
79408560 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAATAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAATA-A
*
79408625 AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
65 AATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
79408690 GAAAAATATAAATTGAAAAACATAAATTGAAAATGAAAATACCTCAGTGTGTCCT
130 GAAAAACAAAAATTGAAAAACATAAATTGAAAATGAAAATACCTCAGTGTGTCCT
* * * *
79408745 GAGGCTCAACTCATCTCTTGTAATATGAGTTGATTTTTGAAAAATATAAATTG-AAAAACAT-AA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAATAAA
79408808 ATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGT
66 ATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT-T
*
79408873 TTGAAAAGCAAAAATTGAAAA
128 TTGAAAAACAAAAATTGAAAA
79408894 TTCCTCAGCG
Statistics
Matches: 138, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
182 58 0.42
184 11 0.08
185 69 0.50
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (184 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAATAAA
ATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
AAAAACAAAAATTGAAAAACATAAATTGAAAATGAAAATACCTCAGTGTGTCCT
Found at i:79408924 original size:78 final size:76
Alignment explanation
Indices: 79408795--79409095 Score: 355
Period size: 78 Copynumber: 4.0 Consensus size: 76
79408785 AAAATATAAA
* * * *
79408795 TTGAAAAACATAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
79408860 GTTGATTTTTTGT
66 GTTGA-TTTTT-T
* * *
79408873 TTGAAAAGCAAAAATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
79408938 GTTGA---TTT
66 GTTGATTTTTT
*
79408946 TTGACAAA-CAGAAATTGAAATTACCTCAGCGT-CTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGA-AAAGCAGAAATTGAAAATACCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGCAATAT
* *
79409009 AAGTT-AATTTTT
64 GAGTTGATTTTTT
* * * ** *
79409021 TTG-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATG
1 TTGAAAAG-CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
*
79409085 AGTTGAATTTT
65 AGTTGATTTTT
79409096 GAAAACAGGA
Statistics
Matches: 195, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
72 2 0.01
73 61 0.31
74 5 0.03
75 57 0.29
76 6 0.03
78 64 0.33
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (76 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTT
Found at i:79408991 original size:73 final size:73
Alignment explanation
Indices: 79408799--79409103 Score: 364
Period size: 73 Copynumber: 4.1 Consensus size: 73
79408789 TATAAATTGA
* * *
79408799 AAAACATAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
79408864 ATTTTTTGTTTG
66 A---TTT-TTTG
* * *
79408876 AAAAGCAAAAATTGAAAATTCCTCAGCGTGC-CCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAA-CAGAAATTGAAAATACCTCAGCGT-CTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
79408940 TGA-TTTTTG
64 TGATTTTTTG
* *
79408949 ACAAACAGAAATTGAAATTACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
79409014 AATTTTTTTG
65 GA-TTTTTTG
* * * ** *
79409024 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
79409089 GA-ATTTTG
65 GATTTTTTG
79409097 AAAACAG
1 AAAACAG
79409104 GAATAAAAAT
Statistics
Matches: 200, Mismatches: 21, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
72 5 0.03
73 67 0.34
74 7 0.04
75 61 0.31
77 4 0.02
78 56 0.28
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:79408997 original size:151 final size:147
Alignment explanation
Indices: 79408799--79409103 Score: 414
Period size: 148 Copynumber: 2.0 Consensus size: 147
79408789 TATAAATTGA
* * *
79408799 AAAACATAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACATCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT-
* * *
79408864 ATTTTTTGTTTGAAA-AGCAAAAATTGAAAATTCCTCAGCGTGCCCTGAGGCTCAACTCACCTCT
65 A-ATTTT-TTTGAAAGA-CAAAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCT
* *
79408928 CGTAATATGAGTTGATTTTTG
127 CGCAATATGAGTTGAATTTTG
* *
79408949 ACAAACAGAAATTGAAATTACCTCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 A-AAACAGAAATTGAAAATACATCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
* * * ** *
79409014 AATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTTGC
65 AATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGC
79409079 AATATGAGTTGAATTTTG
130 AATATGAGTTGAATTTTG
79409097 AAAACAG
1 AAAACAG
79409104 GAATAAAAAT
Statistics
Matches: 137, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
147 6 0.04
148 66 0.48
149 5 0.04
150 2 0.01
151 58 0.42
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (147 bp):
AAAACAGAAATTGAAAATACATCAGCGTCTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTA
ATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGAATTTTG
Found at i:79423507 original size:19 final size:19
Alignment explanation
Indices: 79423464--79423507 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
79423454 AGTAATGTTA
*
79423464 AAATATATACATAATATAT
1 AAATATATACATAATAAAT
*
79423483 ACATATATACAT-ATAAAAT
1 AAATATATACATAAT-AAAT
79423502 AAATAT
1 AAATAT
79423508 TGGAAACGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (19 bp):
AAATATATACATAATAAAT
Found at i:79423579 original size:26 final size:28
Alignment explanation
Indices: 79423536--79423591 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
79423526 ACATATATGA
*
79423536 AAAATATATACATAATAATA-TTAAAAT
1 AAAATATATACATAATAATAGTGAAAAT
* *
79423563 AAAATA-ATACGTGATAATAGTGAAAAT
1 AAAATATATACATAATAATAGTGAAAAT
79423590 AA
1 AA
79423592 TAGGTATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.29
Consensus pattern (28 bp):
AAAATATATACATAATAATAGTGAAAAT
Found at i:79423962 original size:19 final size:19
Alignment explanation
Indices: 79423940--79423977 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
79423930 ATAAATAATG
79423940 ATGATATTAGAAATATACA
1 ATGATATTAGAAATATACA
79423959 ATGATATTAGAAATATACA
1 ATGATATTAGAAATATACA
79423978 TAAAATAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (19 bp):
ATGATATTAGAAATATACA
Found at i:79424040 original size:25 final size:25
Alignment explanation
Indices: 79423971--79424040 Score: 69
Period size: 24 Copynumber: 2.9 Consensus size: 25
79423961 GATATTAGAA
79423971 ATATACATAA-AATA-GTATAAAAG
1 ATATACATAATAATATGTATAAAAG
*
79423994 ATAT--ATAACTAATAGTGT-TAAAAT
1 ATATACATAA-TAATA-TGTATAAAAG
*
79424018 ATATACATAATAATATATATAAA
1 ATATACATAATAATATGTATAAA
79424041 TACAATATTG
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
21 4 0.11
23 8 0.21
24 11 0.29
25 11 0.29
26 4 0.11
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATATACATAATAATATGTATAAAAG
Found at i:79424316 original size:18 final size:18
Alignment explanation
Indices: 79424285--79424319 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
79424275 AAAAAATATA
*
79424285 ATAATAACAGTAAATAAC
1 ATAATAACAATAAATAAC
*
79424303 ATAATAATAATAAATAA
1 ATAATAACAATAAATAA
79424320 TAAAAAACAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
ATAATAACAATAAATAAC
Found at i:79425735 original size:21 final size:20
Alignment explanation
Indices: 79425710--79425748 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
79425700 AATGCATATG
*
79425710 GTATTAAACATGATAATAATA
1 GTATTAAACACGA-AATAATA
79425731 GTATTAAACACGAAATAA
1 GTATTAAACACGAAATAA
79425749 AATCATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.28
Consensus pattern (20 bp):
GTATTAAACACGAAATAATA
Found at i:79425948 original size:37 final size:37
Alignment explanation
Indices: 79425893--79426004 Score: 120
Period size: 37 Copynumber: 3.1 Consensus size: 37
79425883 GCATTAATAG
* * *
79425893 TATTGAAAATATGTACATAATATATATAAAAAGATTA
1 TATTAAAAATATATACATAATATATATTAAAAGATTA
* *
79425930 TATTAAAAATATATACATAATATAAAGTTAAAA-ATAA
1 TATTAAAAATATATACATAATATATA-TTAAAAGATTA
* * * *
79425967 TA-TATAAAGATATACATAATATCTATTAAAAGAATA
1 TATTAAAAATATATACATAATATATATTAAAAGATTA
79426003 TA
1 TA
79426005 CACATAATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
35 6 0.10
36 23 0.37
37 28 0.45
38 5 0.08
ACGTcount: A:0.57, C:0.04, G:0.05, T:0.34
Consensus pattern (37 bp):
TATTAAAAATATATACATAATATATATTAAAAGATTA
Found at i:79425985 original size:19 final size:19
Alignment explanation
Indices: 79425940--79425988 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
79425930 TATTAAAAAT
79425940 ATATACAT-A-ATATAAAG
1 ATATACATAATATATAAAG
* * *
79425957 TTAAAAATAATATATAAAG
1 ATATACATAATATATAAAG
79425976 ATATACATAATAT
1 ATATACATAATAT
79425989 CTATTAAAAG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 5 0.21
18 1 0.04
19 18 0.75
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (19 bp):
ATATACATAATATATAAAG
Found at i:79426211 original size:4 final size:4
Alignment explanation
Indices: 79426202--79426226 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
79426192 TAATAATAAT
79426202 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
79426227 TACTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:79426238 original size:16 final size:16
Alignment explanation
Indices: 79426203--79426251 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
79426193 AATAATAATA
* * *
79426203 ATAAATAAATAAATAA
1 ATAAATATATACATAT
79426219 ATAAATA-ATACTATAT
1 ATAAATATATAC-ATAT
79426235 ATAAATATATACATAT
1 ATAAATATATACATAT
79426251 A
1 A
79426252 CATACACCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 3 0.10
16 22 0.76
17 4 0.14
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAAATATATACATAT
Found at i:79427818 original size:28 final size:28
Alignment explanation
Indices: 79427775--79427880 Score: 92
Period size: 28 Copynumber: 3.7 Consensus size: 28
79427765 AAATTTAGTG
* *
79427775 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCCGTAGCCCATATCAGTA
*
79427802 TTAATCTGGGCCGTAGCCCCT-TACAGTAA
1 TTAATCTGGGCCGTAGCCCATAT-CAGT-A
*
79427831 TAGAGTATACTGGGCC-TAGCCCATATCAGTA
1 T-TA--AT-CTGGGCCGTAGCCCATATCAGTA
*
79427862 TCAATCTGGGCCGTAGCCC
1 TTAATCTGGGCCGTAGCCC
79427881 TATACAAGTC
Statistics
Matches: 64, Mismatches: 6, Indels: 17
0.74 0.07 0.20
Matches are distributed among these distances:
27 12 0.19
28 25 0.39
29 2 0.03
30 2 0.03
31 2 0.03
32 13 0.20
33 8 0.12
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (28 bp):
TTAATCTGGGCCGTAGCCCATATCAGTA
Found at i:79430526 original size:21 final size:21
Alignment explanation
Indices: 79430494--79430536 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
79430484 TTCAAATACG
*
79430494 ATAATATATATATTTTTAATA
1 ATAATATATATAATTTTAATA
*
79430515 ATAATA-ATTATAATTTTCATA
1 ATAATATA-TATAATTTTAATA
79430536 A
1 A
79430537 ATCAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAATATATATAATTTTAATA
Found at i:79434866 original size:3 final size:3
Alignment explanation
Indices: 79434856--79434884 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
79434846 ATAATATGTT
79434856 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
79434885 CAAAGAACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79435573 original size:23 final size:26
Alignment explanation
Indices: 79435526--79435574 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
79435516 AATATTACAA
79435526 TTATCATTTGTTTAACAAAATATTTT
1 TTATCATTTGTTTAACAAAATATTTT
*
79435552 TTAT-ATTT-TTTAA-AAATTATTTT
1 TTATCATTTGTTTAACAAAATATTTT
79435575 GTAATTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 9 0.41
24 5 0.23
25 4 0.18
26 4 0.18
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (26 bp):
TTATCATTTGTTTAACAAAATATTTT
Found at i:79435585 original size:23 final size:24
Alignment explanation
Indices: 79435531--79435585 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
79435521 TACAATTATC
*
79435531 ATTTGTTTAACAAAATATTTTTTAT
1 ATTT-TTTAACAAAATATTTTGTAT
*
79435556 ATTTTTTAA-AAATTATTTTGTA-
1 ATTTTTTAACAAAATATTTTGTAT
79435578 ATTCTTTT
1 ATT-TTTT
79435586 TTATAAATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.11
23 15 0.56
24 5 0.19
25 4 0.15
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (24 bp):
ATTTTTTAACAAAATATTTTGTAT
Found at i:79435621 original size:17 final size:19
Alignment explanation
Indices: 79435595--79435632 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
79435585 TTTATAAATC
*
79435595 ATTAATGATTTTAA-AAAA
1 ATTAATGATTATAACAAAA
79435613 ATTAA-GATTATAACAAAA
1 ATTAATGATTATAACAAAA
79435631 AT
1 AT
79435633 ATTTTTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (19 bp):
ATTAATGATTATAACAAAA
Found at i:79438820 original size:21 final size:22
Alignment explanation
Indices: 79438794--79438835 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
79438784 GGTCAAAAGC
79438794 CCATGTAAAAAG-GGCACACGG
1 CCATGTAAAAAGAGGCACACGG
*
79438815 CCATGTAAAGAGAGGCACACG
1 CCATGTAAAAAGAGGCACACG
79438836 ACCGTGTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.38, C:0.24, G:0.29, T:0.10
Consensus pattern (22 bp):
CCATGTAAAAAGAGGCACACGG
Found at i:79442149 original size:22 final size:26
Alignment explanation
Indices: 79442117--79442168 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
79442107 TTCCAAGCCA
79442117 TATTTCTCACC-CA-TTTAAT-CATT
1 TATTTCTCACCACATTTTAATACATT
79442140 TATTT-TCACCAACATTTTAATACATT
1 TATTTCTCACC-ACATTTTAATACATT
79442166 TAT
1 TAT
79442169 GAATCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 5 0.20
23 5 0.20
24 2 0.08
25 6 0.24
26 7 0.28
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (26 bp):
TATTTCTCACCACATTTTAATACATT
Found at i:79442902 original size:42 final size:42
Alignment explanation
Indices: 79442839--79442999 Score: 162
Period size: 42 Copynumber: 3.7 Consensus size: 42
79442829 CTTCGTTTTC
** *
79442839 TCGATGCCATAGTTCAACTATGGTCTTACAAATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAAATCTTCACAT-A
* * * *
79442882 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTTATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAAATCTTCACATA
*
79442923 TCGATGCCATAGCCAAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACA---AAT--C-T-TCACATA
*
79442972 TCGATGCCATTGCCCAGCTATGGTCTTA
1 TCGATGCCATAGCCCAGCTATGGTCTTA
79443000 TAGAATCACA
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 59 0.61
43 1 0.01
45 2 0.02
48 1 0.01
49 31 0.32
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACAAATCTTCACATA
Found at i:79442991 original size:49 final size:49
Alignment explanation
Indices: 79442923--79443165 Score: 198
Period size: 47 Copynumber: 5.0 Consensus size: 49
79442913 TATTTATATA
* * * *
79442923 TCGATGCCATAGCCAAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATTGCCCAGCTATGGTCTTATACGTAATCACATATCACATC
*
79442972 TCGATGCCATTGCCCAGCTATGGTCTTATA-G-AATCACATATCTCA-C
1 TCGATGCCATTGCCCAGCTATGGTCTTATACGTAATCACATATCACATC
* * *
79443018 T-GATGCCATAT-CCCAGATATGGTCTTATACAGT-AGCATATATCACA-C
1 TCGATGCCAT-TGCCCAGCTATGGTCTTATAC-GTAATCACATATCACATC
* * * * *
79443065 T-GATGCCACAT-CCCAGATATGGTCTTATATGGAAGCACATAATCACATCTC
1 TCGATGCCA-TTGCCCAGCTATGGTCTTATACGTAATCACAT-ATCACA--TC
* ** *
79443116 TCCGATGCAACAGCCCAGCTATGGTCTTATACGGAAATCACATATCACAT
1 T-CGATGCCATTGCCCAGCTATGGTCTTATAC-GTAATCACATATCACAT
79443166 GTTGCCATGG
Statistics
Matches: 160, Mismatches: 20, Indels: 26
0.78 0.10 0.13
Matches are distributed among these distances:
45 25 0.16
46 3 0.02
47 58 0.36
48 7 0.04
49 27 0.17
51 3 0.02
53 29 0.18
54 8 0.05
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (49 bp):
TCGATGCCATTGCCCAGCTATGGTCTTATACGTAATCACATATCACATC
Found at i:79445347 original size:38 final size:38
Alignment explanation
Indices: 79445296--79445371 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
79445286 TAAGTAAATT
*
79445296 TTAATAGCTAAATATAATAGATGATATAGTATTACATA
1 TTAATAGCTAAATATAATAGATGATATAATATTACATA
79445334 TTAATAGCTAAATATAATAGATGATATAATATTACATA
1 TTAATAGCTAAATATAATAGATGATATAATATTACATA
79445372 ATATAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (38 bp):
TTAATAGCTAAATATAATAGATGATATAATATTACATA
Found at i:79445913 original size:25 final size:25
Alignment explanation
Indices: 79445885--79445934 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
79445875 TCTATTAAAT
79445885 ATATATAATTTATGCCTTTTATAAC
1 ATATATAATTTATGCCTTTTATAAC
79445910 ATATATAATTTATGCCTTTTATAAC
1 ATATATAATTTATGCCTTTTATAAC
79445935 GCAAAATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.48
Consensus pattern (25 bp):
ATATATAATTTATGCCTTTTATAAC
Found at i:79446260 original size:16 final size:16
Alignment explanation
Indices: 79446239--79446269 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79446229 CTCTAAGTTA
*
79446239 GGGATGGTAGCGAATC
1 GGGATGGGAGCGAATC
79446255 GGGATGGGAGCGAAT
1 GGGATGGGAGCGAAT
79446270 GTTGTTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.10, G:0.48, T:0.16
Consensus pattern (16 bp):
GGGATGGGAGCGAATC
Found at i:79451900 original size:146 final size:145
Alignment explanation
Indices: 79451679--79451948 Score: 359
Period size: 146 Copynumber: 1.9 Consensus size: 145
79451669 GCAAAGAATA
* * *
79451679 GGCAAACTATAAAAAGTGTTACTAATATAATATAATTATTTTGGGTATGAAAAGAAATACAGAAT
1 GGCAAACTATAAAAAGTGTCACTAATATAATATAATTATTTTGAGTATGAAAAGAAATAAAGAAT
* * *
79451744 TGGGTAAAAA-TCAATCT-TCAACTGAAATTTTGACAATATGTAATAAATCTTAATATTTTTTAG
66 TGAGTAAAAATTCAATATCT-AACTGAAA-TTTAACAATATGTAATAAATCTTAA-ATTTTTTAG
79451807 TTGTAAATTAATAAAATG
128 TTGTAAATTAATAAAATG
* * *
79451825 GGCAAATTATAGAAAGTGTCACTAATGTAATATAATTATTTTAGAGTATGGAAAA-AAATAAAGA
1 GGCAAACTATAAAAAGTGTCACTAATATAATATAATTATTTT-GAGTAT-GAAAAGAAATAAAGA
* * *
79451889 ATTGAGT-AAAATTCAATATCTAATTGAAATTTAACAATTTGTAGTAAATCTTAAATTTTT
64 ATTGAGTAAAAATTCAATATCTAACTGAAATTTAACAATATGTAATAAATCTTAAATTTTT
79451949 CATCATAAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
145 6 0.06
146 64 0.59
147 32 0.30
148 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (145 bp):
GGCAAACTATAAAAAGTGTCACTAATATAATATAATTATTTTGAGTATGAAAAGAAATAAAGAAT
TGAGTAAAAATTCAATATCTAACTGAAATTTAACAATATGTAATAAATCTTAAATTTTTTAGTTG
TAAATTAATAAAATG
Found at i:79453578 original size:17 final size:19
Alignment explanation
Indices: 79453556--79453598 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
79453546 ATGGAAATAT
79453556 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
79453573 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
79453592 AATCTTA
1 AATCTTA
79453599 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:79453588 original size:19 final size:19
Alignment explanation
Indices: 79453564--79453600 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
79453554 ATAATCTTCA
79453564 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79453583 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
79453601 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:79453626 original size:22 final size:22
Alignment explanation
Indices: 79453564--79453623 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 22
79453554 ATAATCTTCA
79453564 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
79453583 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
79453605 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
79453624 GATTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.43
22 8 0.23
23 12 0.34
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:79462567 original size:78 final size:78
Alignment explanation
Indices: 79462433--79462741 Score: 478
Period size: 78 Copynumber: 4.0 Consensus size: 78
79462423 TTTTCACATC
*
79462433 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAAA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
79462498 T-TGGACCTTCATT
66 TCT-GACCTTCATT
* * **
79462511 GAAGTAGATCCAAGATGATTTGGCATCTCTATATTCA-ACGAAGAGCAGATCGAAGACATAACAG
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATT-AGACGGGGAGCAGATCGAAGACATAACAG
*
79462575 ATCTTACCTTCATT
65 ATCTGACCTTCATT
* * * *
79462589 GAAACAGATTCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
79462654 TCTGACCTTCATT
66 TCTGACCTTCATT
*
79462667 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGA
1 GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
*
79462732 TCTAACCTTC
66 TCTGACCTTC
79462742 GAATGTTTTT
Statistics
Matches: 209, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
77 1 0.00
78 206 0.99
79 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGA
TCTGACCTTCATT
Found at i:79463337 original size:220 final size:219
Alignment explanation
Indices: 79462683--79463397 Score: 1096
Period size: 220 Copynumber: 3.3 Consensus size: 219
79462673 GATCCAAGAT
** * * *
79462683 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATG-
* * * * * *
79462748 TTTTACATCGAAGTAGATCCAGGATGATTTGGCATCCTTGCGTTTACAAGGAGTAGATTGAAGAC
65 TTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGAGTTGACAAGGAGCAGATCGAAGAC
* *
79462813 ATAGCAGATTTGGCTTTCACGTGTTTATGCTGAAGCAGATCTAAGATGATTTGGTATCTCTGTAC
130 ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
79462878 TGTCAGAGAACAAATCGAAGAAACA
195 TGTCAGAGAACAAATCGAAGAAACA
*
79462903 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATTTAACCTTCGGATGT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
*
79462968 TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGTA-TTGAC---GAGCAGATCTAAGAC
66 TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTG-AGTTGACAAGGAGCAGATCGAAGAC
* ** *
79463029 ATAGCAGATTTGGCTTTCACGTGTTTACGTTGAAGCAGATCTAAGATGATTTAACATCTCTGTAT
130 ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
79463094 TGTCAGAGAACAAATCGAAGAAACA
195 TGTCAGAGAACAAATCGAAGAAACA
* *
79463119 GATTTGGCATCTCCATATTCGACGGAGAACAGATCGAAGACATAGCAGATCTAACCTTCGGATAT
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
79463184 CTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGAGTTGACAAGGAGCAGATCGAAGAC
66 -TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGAGTTGACAAGGAGCAGATCGAAGAC
* * *
79463249 ATAGCAGATTTGACTTTCATGTGTTTACGCTGAAGCAGATCTAAGATAATTTGGCATCTCTGTAC
130 ATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTAC
79463314 TGTCAGAGAACAAATCGAAGAAACA
195 TGTCAGAGAACAAATCGAAGAAACA
* * ** * * *
79463339 GATTTAGCATCTTCATATTCGACAAAGAGTAGATCAAAGACATAGCAGATCTGACCTTC
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
79463398 ATTGAAGCAG
Statistics
Matches: 451, Mismatches: 38, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
216 159 0.35
217 44 0.10
219 42 0.09
220 206 0.46
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (219 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGT
TTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTTGAGTTGACAAGGAGCAGATCGAAGACA
TAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACT
GTCAGAGAACAAATCGAAGAAACA
Found at i:79463468 original size:78 final size:78
Alignment explanation
Indices: 79463369--79463555 Score: 320
Period size: 78 Copynumber: 2.4 Consensus size: 78
79463359 GACAAAGAGT
* * *
79463369 AGATCAAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 AGATCGAAGACATAGCAGATCTGACCTTCATTAAAGCAGATCCAAGATGATTTGGAATCTCTGTA
79463434 TTAGACGGGGAGC
66 TTAGACGGGGAGC
* * *
79463447 AGATCGAAGACACAGCAGATCTGACCCTCATTAAAGCAGATTCAAGATGATTTGGAATCTCTGTA
1 AGATCGAAGACATAGCAGATCTGACCTTCATTAAAGCAGATCCAAGATGATTTGGAATCTCTGTA
79463512 TTAGACGGGGAGC
66 TTAGACGGGGAGC
79463525 AGATCGAAGACATAGCAGATCTGACCTTCAT
1 AGATCGAAGACATAGCAGATCTGACCTTCAT
79463556 GTGTTTACAT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
78 101 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.24
Consensus pattern (78 bp):
AGATCGAAGACATAGCAGATCTGACCTTCATTAAAGCAGATCCAAGATGATTTGGAATCTCTGTA
TTAGACGGGGAGC
Found at i:79463648 original size:45 final size:45
Alignment explanation
Indices: 79463579--79463768 Score: 233
Period size: 45 Copynumber: 4.2 Consensus size: 45
79463569 AGCAGATCCA
* *
79463579 AGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG
1 AGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAG
* * *
79463624 AGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATTTA-
1 AGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCA-AATCAG
* * *
79463669 AGA-AGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATC-G
1 AGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAG
* * *
79463712 AAGATAACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAA
1 -AGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAG
*
79463758 AGATAGCAGAT
1 AGATAACAGAT
79463769 ATCGCCTTCC
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
43 1 0.01
44 35 0.27
45 89 0.70
46 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (45 bp):
AGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAG
Found at i:79463698 original size:89 final size:90
Alignment explanation
Indices: 79463569--79463768 Score: 289
Period size: 89 Copynumber: 2.2 Consensus size: 90
79463559 TTTACATCGA
* *
79463569 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACA
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGA-AGATAACA
*
79463632 GATTTGGCATCTCTGTATTAGACGGGG
64 GATTTGGCATCTCTATATTAGACGGGG
** * *
79463659 AGCAGATTTAAGA-AGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGATAACAGA
*
79463723 TTTGGCGTCTCTATATTAGACGGGG
66 TTTGGCATCTCTATATTAGACGGGG
79463748 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
79463769 ATCGCCTTCC
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
89 78 0.80
90 20 0.20
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGATAACAGA
TTTGGCATCTCTATATTAGACGGGG
Found at i:79464009 original size:19 final size:20
Alignment explanation
Indices: 79463964--79464009 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
79463954 GCACAGAAAT
*
79463964 AAGTCCAAAAAAAAAATAAT
1 AAGTCCAAAAAAAAAATAAG
* *
79463984 AA-ACCAAAAAAAAAA-ACG
1 AAGTCCAAAAAAAAAATAAG
79464002 AAGTCCAA
1 AAGTCCAA
79464010 GTTCAGTCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
18 3 0.14
19 16 0.76
20 2 0.10
ACGTcount: A:0.70, C:0.15, G:0.07, T:0.09
Consensus pattern (20 bp):
AAGTCCAAAAAAAAAATAAG
Found at i:79464142 original size:19 final size:19
Alignment explanation
Indices: 79464118--79464227 Score: 190
Period size: 19 Copynumber: 5.9 Consensus size: 19
79464108 ATAATCTTCA
79464118 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79464137 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79464156 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
79464175 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
79464192 ATGAT-TGCAATCTTACAT
1 ATGATATGCAATCTTAGAT
79464210 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
79464228 AGATATGATT
Statistics
Matches: 86, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
17 16 0.19
18 15 0.17
19 55 0.64
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Done.