Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 235 of 362
Found at i:79466090 original size:6 final size:6
Alignment explanation
Indices: 79466079--79466103 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79466069 GTAATTCAAC
79466079 AGATGA AGATGA AGATGA AGATGA A
1 AGATGA AGATGA AGATGA AGATGA A
79466104 AACATAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (6 bp):
AGATGA
Found at i:79469053 original size:25 final size:25
Alignment explanation
Indices: 79469025--79469080 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
79469015 TTCTAAATAC
*
79469025 TATTATATATA-CATATATATATATA
1 TATTATAAATACCATAT-TATATATA
* * *
79469050 TATTTTAAATACCATATTGTGTATA
1 TATTATAAATACCATATTATATATA
79469075 TATTAT
1 TATTAT
79469081 TATTACAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (25 bp):
TATTATAAATACCATATTATATATA
Found at i:79469215 original size:14 final size:14
Alignment explanation
Indices: 79469180--79469221 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
79469170 ATCATTATTT
*
79469180 TATATTATTATTGTA
1 TATATTTTTA-TGTA
*
79469195 AAT-TTTTTATGTA
1 TATATTTTTATGTA
79469208 TATATTTTTATGTA
1 TATATTTTTATGTA
79469222 CGTTTCCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 6 0.26
14 15 0.65
15 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (14 bp):
TATATTTTTATGTA
Found at i:79470977 original size:12 final size:12
Alignment explanation
Indices: 79470960--79470995 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
79470950 ATTCATTTGA
79470960 CATTCATGCATT
1 CATTCATGCATT
79470972 CATTCATGCATT
1 CATTCATGCATT
*
79470984 CATTCATACATT
1 CATTCATGCATT
79470996 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:79474094 original size:18 final size:21
Alignment explanation
Indices: 79474056--79474099 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
79474046 GCTGTTTGGT
79474056 CACTGTCGAGGGAGAAGAAGA
1 CACTGTCGAGGGAGAAGAAGA
79474077 CACTGTCGAGGGAGAAGAAGA
1 CACTGTCGAGGGAGAAGAAGA
79474098 CA
1 CA
79474100 TTGTAGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.16, G:0.36, T:0.09
Consensus pattern (21 bp):
CACTGTCGAGGGAGAAGAAGA
Found at i:79479485 original size:69 final size:70
Alignment explanation
Indices: 79479311--79479485 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 70
79479301 TTTTCAAGGG
* * * *
79479311 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATATTTTTAATTTATG
79479376 TTTCCA
66 TTT-CA
* * * *
79479382 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGGCACGCTGAGATATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATATTTTTAATTTATG
*
79479447 TTT-T
66 TTTCA
** *
79479451 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
79479486 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 31 0.34
71 60 0.66
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (70 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGATATTTTTAATTTATG
TTTCA
Found at i:79479606 original size:72 final size:71
Alignment explanation
Indices: 79479514--79479650 Score: 220
Period size: 72 Copynumber: 1.9 Consensus size: 71
79479504 AAATCAACTA
* * * *
79479514 ATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTTAATT
1 ATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT-TTTCAATT
79479579 TCAGCTC
65 TCAGCTC
*
79479586 ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
1 ATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
79479651 ACCTTTTAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
71 8 0.13
72 52 0.87
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (71 bp):
ATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
CAGCTC
Found at i:79480017 original size:72 final size:72
Alignment explanation
Indices: 79479900--79480040 Score: 282
Period size: 72 Copynumber: 2.0 Consensus size: 72
79479890 TTCAAAAAAA
79479900 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
79479965 TGTTTTC
66 TGTTTTC
79479972 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
79480037 TGTT
66 TGTT
79480041 CAAAGTGAGT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:79480403 original size:138 final size:138
Alignment explanation
Indices: 79480138--79480408 Score: 404
Period size: 138 Copynumber: 2.0 Consensus size: 138
79480128 TTTGTTTTTC
* * *
79480138 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTCT
*** *
79480203 CGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCCCTGAGGTAT
66 CGTATGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACCCTGAGGTAT
79480268 TTTAAAAA
131 TTTAAAAA
79480276 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTTC
* * *
79480340 T-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGG
65 TCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC-CCT-GAGG
79480403 TATTTT
128 TATTTT
79480409 CAATTTTCGT
Statistics
Matches: 120, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
136 45 0.38
137 4 0.03
138 68 0.57
139 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (138 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTCT
CGTATGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACCCTGAGGTAT
TTTAAAAA
Found at i:79480414 original size:76 final size:74
Alignment explanation
Indices: 79480273--79480414 Score: 232
Period size: 74 Copynumber: 1.9 Consensus size: 74
79480263 GGTATTTTAA
79480273 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
79480338 TCTGTTGTC
66 TCTGTTGTC
* *
79480347 AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCT-GAGGTAATTTCA
79480411 ATTT
63 ATTT
79480415 TCGTTTTTCA
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
74 42 0.67
75 1 0.02
76 20 0.32
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTGTTGTC
Found at i:79480549 original size:76 final size:77
Alignment explanation
Indices: 79480439--79480585 Score: 224
Period size: 76 Copynumber: 1.9 Consensus size: 77
79480429 TCTGCCTTTC
* * *
79480439 AAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
79480503 ATTTCTGTTGTA
66 ATTTCTGTTGTA
* * *
79480515 AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTC
79480580 AATTTC
65 AATTTC
79480586 CGTTTTTGAA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 41 0.65
78 22 0.35
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (77 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCA
ATTTCTGTTGTA
Found at i:79480559 original size:170 final size:169
Alignment explanation
Indices: 79480271--79480918 Score: 923
Period size: 170 Copynumber: 3.8 Consensus size: 169
79480261 GAGGTATTTT
*
79480271 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGCTAATTTCA
* * *
79480335 ATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTC
66 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC
*
79480399 GAGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC
131 GAGGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTC
* *
79480439 AAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGCTAATTTCA
** * * * *
79480503 ATTTCTGT-TGTAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACG
66 ATTTCTGTCT-T-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
* *
79480567 CCGAGGTATTTTCAATTTCCGTTTTTGAATTTCTGCCTTTC
129 TCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * ** * *
79480608 AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAG-CTTTGGCTCACGCGCTGAGCTATTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CACACGCTGAGCTAATTT
79480672 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
64 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
79480737 TCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
129 TCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * * *
79480778 AAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--CACACGCTGAGCTAATTT
*
79480842 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC-
64 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACG
*
79480906 ACTGAGGTATTTT
129 TC-GAGGTATTTT
79480919 TTCAATTTAT
Statistics
Matches: 443, Mismatches: 29, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
168 76 0.17
169 50 0.11
170 289 0.65
171 27 0.06
172 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (169 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGCTAATTTCA
ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC
GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
Found at i:79480747 original size:77 final size:77
Alignment explanation
Indices: 79480589--79480765 Score: 212
Period size: 77 Copynumber: 2.3 Consensus size: 77
79480579 CAATTTCCGT
* * * * ** *
79480589 TTTTGAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCTTTGGCT
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGAT
*
79480654 CACGCGCTGAGCTA
64 CACACGCTGAGCTA
*
79480668 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
*
79480733 CACG-TCGAGGTA
66 CACGCT-GAGCTA
* *
79480745 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
79480766 TTTCTGCCTT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
76 1 0.01
77 67 0.79
79 17 0.20
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
CACGCTGAGCTA
Found at i:79480840 original size:93 final size:91
Alignment explanation
Indices: 79480668--79480858 Score: 258
Period size: 93 Copynumber: 2.1 Consensus size: 91
79480658 CGCTGAGCTA
* *
79480668 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATCA
*
79480733 CACGTCGAGGTATTTTCAATTTCCGT
66 CACGTCGAGCTATTTTCAATTTCCGT
* ** *
79480759 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGAT
* *
79480824 CACGCG-CTGAGCTATTTTCAATTTCTGT
64 CACACGTC-GAGCTATTTTCAATTTCCGT
*
79480852 CTTTCAA
1 TTTTCAA
79480859 AAAAATCAAC
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
91 18 0.21
92 1 0.01
93 68 0.78
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATCA
CACGTCGAGCTATTTTCAATTTCCGT
Found at i:79480888 original size:77 final size:77
Alignment explanation
Indices: 79480759--79481351 Score: 383
Period size: 88 Copynumber: 7.2 Consensus size: 77
79480749 CAATTTCCGT
** * *
79480759 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
79480824 CACGCGCTGAGCTA
64 CACACGCTGAGCTA
* * *
79480838 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
79480902 ACACACTGAGGTA
65 ACACGCTGAGCTA
* * * * *
79480915 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTTGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
79480980 CACATG-TCGAGGTA
64 CACACGCT-GAGCTA
** *
79480994 TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
79481059 GCCTTGGCTCACGTGCTGAGCTA
55 GCCTTGGCTCACACGCTGAGCTA
* *
79481082 TTTTCAATTTCTATTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
1 TTTTCAATTTC--TGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CT-
** * * *
79481147 ATTTCTGCGAGA-GTTGAGTTGA
59 -TGGCT-C-ACACGCTGAGCT-A
* * *
79481169 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGC
** *
79481231 TCACA-TATCGAGGTA
63 TCACACGCT-GAGCTA
*
79481246 TTTTCAAAATCTACTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC---A---A--TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* **
79481310 AGCCTTGGCTTACGTGCTGAGCTA
54 AGCCTTGGCTCACACGCTGAGCTA
79481334 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
79481352 AATGTCTGTT
Statistics
Matches: 410, Mismatches: 57, Indels: 97
0.73 0.10 0.17
Matches are distributed among these distances:
75 3 0.01
76 7 0.02
77 67 0.16
78 8 0.02
79 90 0.22
80 36 0.09
81 2 0.00
82 1 0.00
83 5 0.01
84 32 0.08
85 9 0.02
86 7 0.02
87 14 0.03
88 109 0.27
89 12 0.03
90 8 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:79480921 original size:79 final size:77
Alignment explanation
Indices: 79480758--79481142 Score: 283
Period size: 79 Copynumber: 4.8 Consensus size: 77
79480748 TCAATTTCCG
* * * * *
79480758 TTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGC
1 TTTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGA
* *
79480823 TCACGCGCTGAGCTA
63 TCACACACTGAGCTA
79480838 -TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
1 TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATC
*
79480902 ACACACTGAGGTA
65 ACACACTGAGCTA
* * * * * * *
79480915 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTTGGGT
1 -TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGAT
** *
79480980 CACA-TGTCGAGGTA
64 CACACACT-GAGCTA
** * *
79480994 -TTTTCAAAATCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTG
1 TTTTTCAATTTCTGTCTTTCA-A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * ***
79481058 AGCCTTGGCTCACGTGCTGAGCTA
55 AG-CTTAGATCACACACTGAGCTA
* *
79481082 -TTTTCAATTTCTATTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
1 TTTTTCAATTTC--TGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
79481143 TTTAATTTCT
Statistics
Matches: 253, Mismatches: 32, Indels: 41
0.78 0.10 0.13
Matches are distributed among these distances:
76 3 0.01
77 63 0.25
78 2 0.01
79 88 0.35
80 31 0.12
88 56 0.22
89 2 0.01
90 8 0.03
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (77 bp):
TTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCA
CACACTGAGCTA
Found at i:79481158 original size:30 final size:30
Alignment explanation
Indices: 79481122--79481183 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
79481112 CAACTCATAT
79481122 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
79481152 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
79481182 TG
1 TG
79481184 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:79481250 original size:164 final size:166
Alignment explanation
Indices: 79480838--79481252 Score: 415
Period size: 164 Copynumber: 2.5 Consensus size: 166
79480828 CGCTGAGCTA
* *
79480838 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCTTCAGATC
1 TTTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGATC
* *
79480902 ACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAG
64 ACATACTGAGGTA--TTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAG
* *
79480967 TTGAGCCTTGGGTCACATGTCGAGGTATTTTCAAAATCTGT
127 TTGAGCCTT-GGTCACATGTCGAGGTATGTTCAAAATCAGT
* * * *
79481008 TTTTCAGA-TTCTG-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT-GGCTCA
1 TTTTCA-ATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGATCA
* * * * *
79481070 CGTGCTGAGCTATTTTCAATTTCTATTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAG
65 CATACTGAGGTATTTTCAA-TT-TATATTTTTCAAAAAAA-TCAACTCACATTGCGAGAGGTGAG
* * * * * ** *
79481135 TTGAG-CTT-TTTA-ATTTCTGCGAG-A-GTT-GAGTTGAGT
127 TTGAGCCTTGGTCACATGTC-GAG-GTATGTTCAAAATCAGT
79481171 CTTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAG-TCA
1 -TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGATCA
79481234 CATA-TCGAGGTATTTTCAA
65 CATACT-GAGGTATTTTCAA
79481253 AATCTACTTT
Statistics
Matches: 204, Mismatches: 29, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
162 1 0.00
163 11 0.05
164 68 0.33
165 13 0.06
166 3 0.01
167 62 0.30
168 30 0.15
169 4 0.02
170 11 0.05
171 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (166 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCAGATCAC
ATACTGAGGTATTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTGA
GCCTTGGTCACATGTCGAGGTATGTTCAAAATCAGT
Found at i:79481284 original size:252 final size:245
Alignment explanation
Indices: 79480610--79481351 Score: 874
Period size: 252 Copynumber: 3.0 Consensus size: 245
79480600 TGCCTTTCAA
* * ** * * * *
79480610 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCTTTGGCTCACGCGCTGAGCTA--TTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* *
79480673 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGATCACACG
66 AATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAG-TCACATG
** * * * *
79480737 TCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTACG
129 TCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTG-CTTTC---AAAAAATCAACTCATATTGCG
* * *
79480802 AGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTC-TGTCTTTC
190 AGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTTTTTTTTC
*
79480857 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* * * * **
79480922 AATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTTGGGTCACATGT
66 AATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGTCACATGT
* *
79480987 CGAGGTATTTTCAAAATCTGTTTTTC-AGATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAA
130 CGAGGTATTTTCAAAATCTGTTTTTCAAG-TTCTGCTTTCAAAAAATCAACTCATATTGCGAGAG
79481050 GTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTATTTTTTTC
194 GTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCT-TTTTTTTC
* * * * *
79481103 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-ACA-CTGAGGT
*
79481167 GAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTCA
58 -A-TCTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCA
* ** **
79481230 GTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAGTTAAG-TTTCAAAAAATCAACTCATAT
121 GTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGCTTTCAAAAAATCAACTCATAT
* *
79481294 TGCGAGAGGTGAGTTGAGCCTTGGCTTACGTGCTGAGCTATTTTCAATTTCTGTTTTT
186 TGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTTTTTTT
79481352 AATGTCTGTT
Statistics
Matches: 429, Mismatches: 48, Indels: 32
0.84 0.09 0.06
Matches are distributed among these distances:
244 63 0.15
246 13 0.03
247 80 0.19
248 6 0.01
249 90 0.21
250 4 0.01
251 10 0.02
252 138 0.32
253 7 0.02
254 13 0.03
255 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (245 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCAGTCACATGTC
GAGGTATTTTCAAAATCTGTTTTTCAAGTTCTGCTTTCAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTTTTTTTTC
Found at i:79486097 original size:43 final size:41
Alignment explanation
Indices: 79486045--79486188 Score: 197
Period size: 40 Copynumber: 3.5 Consensus size: 41
79486035 TATTCGGATG
79486045 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCT
* *
79486088 ATACCCGGGCTAAGTCCCGAAGGCATTTATGC-TAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
*
79486128 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCG-AGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
*
79486168 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79486189 ATACTTGGGT
Statistics
Matches: 91, Mismatches: 7, Indels: 10
0.84 0.06 0.09
Matches are distributed among these distances:
39 15 0.16
40 44 0.48
41 2 0.02
43 30 0.33
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
Found at i:79488529 original size:16 final size:16
Alignment explanation
Indices: 79488510--79488540 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79488500 TGTGTAAAAA
*
79488510 AACATAAATATAAATG
1 AACATAAAAATAAATG
79488526 AACATAAAAATAAAT
1 AACATAAAAATAAAT
79488541 AAAGACAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (16 bp):
AACATAAAAATAAATG
Found at i:79489394 original size:148 final size:149
Alignment explanation
Indices: 79489096--79489550 Score: 575
Period size: 148 Copynumber: 3.0 Consensus size: 149
79489086 AAAATCAAAG
* * * * * * * *
79489096 TTTTCTTTAAAAAAAAATATTACTCTTCTTAAAAATCAAAAC-TTTATTTCGAAATAGTTGAAAA
1 TTTTTTTTAAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTT-GAAATAGTTGAAAA
* * * * *
79489160 AAAATCAAAACTTTATTTTTAAAATTTAAACTTTCCTCT-AAATGACTAAAAAAAATAGATTTTT
65 AAAA-C---A--TTGTTTTAAAAATTTAAACTTTTCTTTAAAATGACAAAAAAAAATAGATTTTT
*
79489224 ATTTTTCAAAATCTAAACTTTCTCCAT
124 ATTTTTTAAAATCTAAACTTTCTCC-T
*
79489251 TTTTTTTT-AAAAAAAACATTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTG-AAA
1 TTTTTTTTAAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTA-TTTGAAATAGTTGAAAA
79489314 AAAA-ATTGTTTTAAAAATTTAAACTTTTCTTTAAAATGACAAAAAAAAATAGATTTTTATTTTT
65 AAAACATTGTTTTAAAAATTTAAACTTTTCTTTAAAATGACAAAAAAAAATAGATTTTTATTTTT
* *
79489378 TAAAACCTAAAGTTTCTCCT
130 TAAAATCTAAACTTTCTCCT
79489398 TTTTTTTTAAAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTGAAATAGTTGAAAA
1 TTTTTTTT-AAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTGAAATAGTTGAAAA
* *
79489463 AAAACTATTGTTTTAAAAATTTAAACTTTTCTTTAAAATCACTAAAAAAACAT--ATTTTTATTT
65 AAAAC-ATTGTTTTAAAAATTTAAACTTTTCTTTAAAATGAC-AAAAAAAAATAGATTTTTATTT
79489526 TTTAAAATCTAAACTTTCT-CT
128 TTTAAAATCTAAACTTTCTCCT
79489547 TTTT
1 TTTT
79489551 AAAAAAAAAT
Statistics
Matches: 271, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
147 32 0.12
148 59 0.22
149 51 0.19
150 27 0.10
151 35 0.13
152 9 0.03
154 34 0.13
155 21 0.08
156 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.43
Consensus pattern (149 bp):
TTTTTTTTAAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTGAAATAGTTGAAAAA
AAACATTGTTTTAAAAATTTAAACTTTTCTTTAAAATGACAAAAAAAAATAGATTTTTATTTTTT
AAAATCTAAACTTTCTCCT
Found at i:79489512 original size:49 final size:50
Alignment explanation
Indices: 79489407--79489512 Score: 110
Period size: 49 Copynumber: 2.1 Consensus size: 50
79489397 TTTTTTTTTA
* * * *
79489407 AAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTATTTGAAATAGT
1 AAAAAAAAACACTATTGTTCTTAAAAATTAAAGCTTTTATTTAAAATACT
** *
79489457 TGAAAAAAA-ACTATTGTT-TTAAAAATTTAAA-CTTTTCTTTAAAATCACT
1 AAAAAAAAACACTATTGTTCTTAAAAA-TTAAAGCTTTTATTTAAAAT-ACT
79489506 AAAAAAA
1 AAAAAAA
79489513 CATATTTTTA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
48 18 0.40
49 20 0.44
50 7 0.16
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.37
Consensus pattern (50 bp):
AAAAAAAAACACTATTGTTCTTAAAAATTAAAGCTTTTATTTAAAATACT
Found at i:79492226 original size:40 final size:39
Alignment explanation
Indices: 79492134--79492354 Score: 329
Period size: 40 Copynumber: 5.6 Consensus size: 39
79492124 TATTCGGATG
* *
79492134 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
79492173 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
79492213 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTGCT
79492255 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTG-CT
* *
79492294 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCT
*
79492334 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79492355 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 6, Indels: 14
0.89 0.03 0.07
Matches are distributed among these distances:
38 5 0.03
39 53 0.31
40 71 0.42
41 30 0.18
42 5 0.03
43 5 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGCT
Found at i:79492372 original size:81 final size:80
Alignment explanation
Indices: 79492134--79492354 Score: 385
Period size: 81 Copynumber: 2.8 Consensus size: 80
79492124 TATTCGGATG
79492134 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTT-CTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
79492198 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
79492213 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTGCTATA-CCGGGCTAAGTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TGCTATATCCGGGCTAAGTCCCGAAGG
79492277 CATTTGTGCTAGTGACT
64 CATTTGTGCTAGTGACT
* *
79492294 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAG
79492355 TACTTGGTTT
Statistics
Matches: 136, Mismatches: 2, Indels: 8
0.93 0.01 0.05
Matches are distributed among these distances:
79 57 0.42
80 2 0.01
81 72 0.53
82 5 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:79498021 original size:40 final size:40
Alignment explanation
Indices: 79497966--79498230 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
79497956 TATTTGGATG
*
79497966 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
79498006 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79498046 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
79498086 ATAACCGGGCAAAGTCCTGAAGGCATTTGTACGAGCAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGT--GCG-AGTTACT
* * *
79498129 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
79498169 ATATCCGGGCTAAGACCTGAAGGCATTTGCGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
79498209 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79498231 TACTTGGGTT
Statistics
Matches: 195, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
39 13 0.07
40 148 0.76
41 1 0.01
42 1 0.01
43 32 0.16
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79498191 original size:123 final size:120
Alignment explanation
Indices: 79497970--79498230 Score: 339
Period size: 123 Copynumber: 2.2 Consensus size: 120
79497960 TGGATGATAT
* * *
79497970 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCAAAGTCCCGAAGGCATTTGTGAGAGTTCCTATACCCGGGCTAAGTCCCGAAGGCATTTG
** *
79498035 TGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAA
66 TGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATAA
* *
79498090 CCGGGCAAAGTCCTGAAGGCATTTGTACGAGCAGTTGCTATACCCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCAAAGTCCCGAAGGCATTTGT--GAG-AGTTCCTATACCCGGGCTAAGTCCCGAAGGCAT
* * * * *
79498155 TTGTGCTAGTGACTATATCCGGGCTAAGACCTGAAGGCATTTGCGCGAGTTG-CTATAT
63 TTGTGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACTATAA
79498213 CC-GGCTAAA-TCCCGAAGG
1 CCGGGC-AAAGTCCCGAAGG
79498231 TACTTGGGTT
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
120 24 0.20
122 13 0.11
123 83 0.68
124 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (120 bp):
CCGGGCAAAGTCCCGAAGGCATTTGTGAGAGTTCCTATACCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATAA
Found at i:79498249 original size:83 final size:80
Alignment explanation
Indices: 79497966--79498230 Score: 388
Period size: 80 Copynumber: 3.3 Consensus size: 80
79497956 TATTTGGATG
* ** *
79497966 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCA
* *
79498031 TTTGTGCGAGTTCCT
66 TTTGCGCGAGTTGCT
* *
79498046 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAACCGGGCAAAGTCCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCA
*
79498111 TTTGTACGAGCAGTTGCT
66 TTTG--CGCG-AGTTGCT
* *
79498129 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCTGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCA
79498194 TTTGCGCGAGTTGCT
66 TTTGCGCGAGTTGCT
*
79498209 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
79498231 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
79 15 0.09
80 75 0.45
81 3 0.02
82 2 0.01
83 71 0.43
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCTGAAGGCA
TTTGCGCGAGTTGCT
Found at i:79511806 original size:18 final size:18
Alignment explanation
Indices: 79511783--79511819 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
79511773 AGAATAAAAC
79511783 CTTATCATTTCTCATGTA
1 CTTATCATTTCTCATGTA
*
79511801 CTTATCATTTCTGATGTA
1 CTTATCATTTCTCATGTA
79511819 C
1 C
79511820 AACTACTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.49
Consensus pattern (18 bp):
CTTATCATTTCTCATGTA
Found at i:79513105 original size:46 final size:46
Alignment explanation
Indices: 79513043--79513290 Score: 163
Period size: 46 Copynumber: 5.4 Consensus size: 46
79513033 GTCGATGCCG
* * * *
79513043 TGTCCCTGACAGGTCTTACACTAAGACATGTAACCGTGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAACACATGTAACCGAGCCGATGCA
* * * * * *
79513089 TGTCCTAGTCATGTCTTACATTGACACATGTAACTGAGCCTATGCA
1 TGTCCCAGACATGTCTTACACTAACACATGTAACCGAGCCGATGCA
* * * *
79513135 TGTCCCAGACATGTCTTACACTAGCACATCT---CGTAGCCGACGCT
1 TGTCCCAGACATGTCTTACACTAACACATGTAACCG-AGCCGATGCA
* ** * *
79513179 TGTCCCAGACATGTCTCACACTGGCTAACATCT---CGAGGCCGATGCG
1 TGTCCCAGACATGTCTTACACTAAC--ACATGTAACCGA-GCCGATGCA
* *
79513225 TGTCCCAGACATGTCTTACACTAGCAC-TCGT--CTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAACACAT-GTAAC-CGA-GCCGATG-CA
79513272 TGTCCCAGACATGGTCTTA
1 TGTCCCAGACAT-GTCTTA
79513291 AACTGGCTCT
Statistics
Matches: 163, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
43 2 0.01
44 33 0.20
45 1 0.01
46 108 0.66
47 13 0.08
48 6 0.04
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTAACACATGTAACCGAGCCGATGCA
Found at i:79513194 original size:44 final size:44
Alignment explanation
Indices: 79513135--79513251 Score: 164
Period size: 46 Copynumber: 2.6 Consensus size: 44
79513125 AGCCTATGCA
*
79513135 TGTCCCAGACATGTCTTACACTAGCACATCTCGTA-GCCGACGCT
1 TGTCCCAGACATGTCTTACACTAGCACATCTCG-AGGCCGACGCG
* * *
79513179 TGTCCCAGACATGTCTCACACTGGCTAACATCTCGAGGCCGATGCG
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGAGGCCGACGCG
79513225 TGTCCCAGACATGTCTTACACTAGCAC
1 TGTCCCAGACATGTCTTACACTAGCAC
79513252 TCGTCTCAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 25 0.39
45 1 0.02
46 38 0.59
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGAGGCCGACGCG
Found at i:79513333 original size:94 final size:90
Alignment explanation
Indices: 79513130--79513340 Score: 230
Period size: 94 Copynumber: 2.3 Consensus size: 90
79513120 AACTGAGCCT
*
79513130 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCTTGTCCCAGACATGTCT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
*
79513195 CACACTGGCTAACATCTCGAGGCCG
66 CAAACTGGCTAACATCTCGAGGCCG
* *
79513220 ATGCGTGTCCCAGACATGTCTTACACTAGCAC-TCGTC-TCAATGCCGATGCCATGTCCCAGACA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGACG-CATGTCCCAGACA
* *** * * *
79513283 TGGTCTTAAACTGGCTCTTAT-TATGTGGCTG
61 T-GTCTCAAACTGGCTAACATCT-CGAGGCCG
*
79513314 ATGCATGTCCCAGACATGTCTAACACT
1 ATGCATGTCCCAGACATGTCTTACACT
79513341 GGCGCACATA
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
89 3 0.03
90 33 0.33
91 1 0.01
92 6 0.06
93 14 0.14
94 44 0.44
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (90 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
CAAACTGGCTAACATCTCGAGGCCG
Found at i:79519289 original size:46 final size:46
Alignment explanation
Indices: 79519227--79519525 Score: 196
Period size: 46 Copynumber: 6.5 Consensus size: 46
79519217 GACGATGCCG
* *
79519227 TGTCCCTGACAGGTCTTACACTGAGACATGTAACCGTGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCGATGCA
* *
79519273 TGTCCTAGACATGTCTTACACTGACACATGTAACCGTG-CGCATGCA
1 TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCG-ATGCA
* *
79519319 TGTCCCAGACATGTCTTACACT-AGCACATCT---CGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAG-ACATGTAACCGT-GCCGATGCA
* * * *
79519363 TGTCCCAGACATGTCTCACACTG-G-C-T-AACATCTCGAGGCCGATGCG
1 TGTCCCAGACATGTCTTACACTGAGACATGTA-A-C-CG-TGCCGATGCA
** **
79519409 TGTCCCAGACATGTCTTACACT-AG-CACTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGAGACA-T-GTAACCGTGCCGATG-CA
* * *
79519456 TGTCCCAGACATGGTCTTAAACTG-G-C-TCTCATTA-TGTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTGAGACATGT-A--ACCGT-GCCGATGCA
*
79519503 TGTCCCAGACATGTCTAACACTG
1 TGTCCCAGACATGTCTTACACTG
79519526 GCGCACATAT
Statistics
Matches: 200, Mismatches: 29, Indels: 48
0.72 0.10 0.17
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 3 0.01
44 27 0.14
45 6 0.03
46 114 0.57
47 28 0.14
48 20 0.10
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCGATGCA
Found at i:79519513 original size:94 final size:90
Alignment explanation
Indices: 79519314--79519524 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 90
79519304 AACCGTGCGC
79519314 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
*
79519379 CACACTGGCTAACATCTCGAGGCCG
66 CAAACTGGCTAACATCTCGAGGCCG
* *
79519404 ATGCGTGTCCCAGACATGTCTTACACTAGCAC-TCGTC-TCAATGCCGATGCCATGTCCCAGACA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGACG-CATGTCCCAGACA
* ** * *
79519467 TGGTCTTAAACTGGCTCTCAT-TATGTGGCCG
61 T-GTCTCAAACTGGCTAACATCT-CGAGGCCG
*
79519498 ATGCATGTCCCAGACATGTCTAACACT
1 ATGCATGTCCCAGACATGTCTTACACT
79519525 GGCGCACATA
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
89 3 0.03
90 33 0.32
91 1 0.01
92 6 0.06
93 15 0.14
94 46 0.44
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (90 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
CAAACTGGCTAACATCTCGAGGCCG
Found at i:79522634 original size:82 final size:81
Alignment explanation
Indices: 79522518--79522673 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
79522508 AAATTGTACA
* * * *
79522518 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
79522582 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79522599 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
79522664 TGCGAGTTGA
65 TGCGAATTGA
79522674 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79522641 original size:55 final size:52
Alignment explanation
Indices: 79522517--79522670 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
79522507 TAAATTGTAC
* *
79522517 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
79522570 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
79522625 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
79522671 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:79522675 original size:27 final size:27
Alignment explanation
Indices: 79522518--79522673 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
79522508 AAATTGTACA
*
79522518 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
79522545 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
79522572 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
79522599 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
79522627 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
79522654 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
79522674 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:79522684 original size:27 final size:27
Alignment explanation
Indices: 79522510--79522694 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
79522500 GCGGGATTAA
*
79522510 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
79522537 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
79522564 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
79522591 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
79522619 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
79522646 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
79522673 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
79522695 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:79522685 original size:82 final size:81
Alignment explanation
Indices: 79522510--79522694 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
79522500 GCGGGATTAA
* * * *
79522510 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
79522575 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
79522591 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
79522655 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
79522673 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
79522695 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:79530744 original size:82 final size:81
Alignment explanation
Indices: 79530628--79530783 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
79530618 AAATTGTACA
* * * *
79530628 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
79530692 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79530709 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
79530774 TGCGAGTTGA
65 TGCGAATTGA
79530784 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79530751 original size:55 final size:52
Alignment explanation
Indices: 79530627--79530780 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
79530617 TAAATTGTAC
* *
79530627 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
79530680 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
79530735 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
79530781 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:79530785 original size:27 final size:27
Alignment explanation
Indices: 79530628--79530783 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
79530618 AAATTGTACA
*
79530628 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
79530655 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
79530682 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
79530709 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
79530737 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
79530764 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
79530784 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:79530794 original size:27 final size:27
Alignment explanation
Indices: 79530620--79530804 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
79530610 GCGGGATTAA
*
79530620 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
79530647 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
79530674 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
79530701 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
79530729 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
79530756 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
79530783 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
79530805 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:79530795 original size:82 final size:81
Alignment explanation
Indices: 79530620--79530804 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
79530610 GCGGGATTAA
* * * *
79530620 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
79530685 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
79530701 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
79530765 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
79530783 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
79530805 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:79536982 original size:46 final size:46
Alignment explanation
Indices: 79536920--79537218 Score: 196
Period size: 46 Copynumber: 6.5 Consensus size: 46
79536910 GACGATGCCG
* *
79536920 TGTCCCTGACAGGTCTTACACTGAGACATGTAACCGTGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCGATGCA
* *
79536966 TGTCCTAGACATGTCTTACACTGACACATGTAACCGTG-CGCATGCA
1 TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCG-ATGCA
* *
79537012 TGTCCCAGACATGTCTTACACT-AGCACATCT---CGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAG-ACATGTAACCGT-GCCGATGCA
* * * *
79537056 TGTCCCAGACATGTCTCACACTG-G-C-T-AACATCTCGAGGCCGATGCG
1 TGTCCCAGACATGTCTTACACTGAGACATGTA-A-C-CG-TGCCGATGCA
** **
79537102 TGTCCCAGACATGTCTTACACT-AG-CACTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGAGACA-T-GTAACCGTGCCGATG-CA
* * *
79537149 TGTCCCAGACATGGTCTTAAACTG-G-C-TCTCATTA-TGTGGCCGATGCA
1 TGTCCCAGACAT-GTCTTACACTGAGACATGT-A--ACCGT-GCCGATGCA
*
79537196 TGTCCCAGACATGTCTAACACTG
1 TGTCCCAGACATGTCTTACACTG
79537219 GCGCACATAT
Statistics
Matches: 200, Mismatches: 29, Indels: 48
0.72 0.10 0.17
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 3 0.01
44 27 0.14
45 6 0.03
46 114 0.57
47 28 0.14
48 20 0.10
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGAGACATGTAACCGTGCCGATGCA
Found at i:79537206 original size:94 final size:90
Alignment explanation
Indices: 79537007--79537217 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 90
79536997 AACCGTGCGC
79537007 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
*
79537072 CACACTGGCTAACATCTCGAGGCCG
66 CAAACTGGCTAACATCTCGAGGCCG
* *
79537097 ATGCGTGTCCCAGACATGTCTTACACTAGCAC-TCGTC-TCAATGCCGATGCCATGTCCCAGACA
1 ATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCGT--A-GCCGACG-CATGTCCCAGACA
* ** * *
79537160 TGGTCTTAAACTGGCTCTCAT-TATGTGGCCG
61 T-GTCTCAAACTGGCTAACATCT-CGAGGCCG
*
79537191 ATGCATGTCCCAGACATGTCTAACACT
1 ATGCATGTCCCAGACATGTCTTACACT
79537218 GGCGCACATA
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
89 3 0.03
90 33 0.32
91 1 0.01
92 6 0.06
93 15 0.14
94 46 0.44
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (90 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCATGTCCCAGACATGTCT
CAAACTGGCTAACATCTCGAGGCCG
Found at i:79549547 original size:278 final size:279
Alignment explanation
Indices: 79549049--79549615 Score: 850
Period size: 278 Copynumber: 2.0 Consensus size: 279
79549039 CACGGCCTGA
* * *
79549049 GGACATGGGCGTGTTGAAGATACACGGGCTTGTCACTATGTCTACATGGGTGTATGGCTCCACTT
1 GGACATGGGTGTGTTGAAGACACACGGGCTTGTCACTATGTCCACATGGGTGTATGGCTCCACTT
* * *
79549114 CATGGAAAAAAATTCATAAATTTTTCCTGAACTTTCCAAAGTTCTCGGTTTAGTCCCTAATTACT
66 CATGGAAAAAAATTCATAAATTTTTCCCGAACTTTCCAAAGTTCTCGGTTTAGTCCCGAATTACG
* * *
79549179 TTCATAGCACGTTTAAAGCCTCGTATGCCTAAATAAGGGACTTTAAGATAGAAATTGAAAAGTTT
131 TTCATAGCACGTTTAAAGCCTCGTAGGCCCAAATAAGGGACTTTAAGATAGAAATTGAAAAGCTT
* * * *
79549244 TAAATTTGAGCGAAATTTTATAGCTCAGATTGCTTGATTGTTTGCGTTTAAGTTTGGTAACACCT
196 TAAATTTGAACAAAATTTTATAGCTCAGATTGCTTGATTGTTTGCGTTTAAGTCTGATAACACCT
* *
79549309 CGTATCCTGTCTCGGTGTT
261 CGTATCCTATCTCGGCGTT
* * *
79549328 GGACATGGGTGTGTTGAAGACACACGGG-TGTGTCCCTGTGTCCACATGGGTGTGTGGCTCCACT
1 GGACATGGGTGTGTTGAAGACACACGGGCT-TGTCACTATGTCCACATGGGTGTATGGCTCCACT
* * * *
79549392 TCATGGAAACAATTTCATAAA-TTTTCCCGAGCTTTCCAAAGTTCTCGGTTTAGTCCCGAATTAG
65 TCATGGAAAAAAATTCATAAATTTTTCCCGAACTTTCCAAAGTTCTCGGTTTAGTCCCGAATTAC
* *
79549456 GTTCATAGCACGTTTAAGGCCTTGTAGGCCCAAATAAGGGACTTTAAGATAGAAATTGAAAAGCT
130 GTTCATAGCACGTTTAAAGCCTCGTAGGCCCAAATAAGGGACTTTAAGATAGAAATTGAAAAGCT
* * **
79549521 TTAAATTTGAACAAAATTTTATAGCTCGGATTGCTTGATTGTTTGTGTTTAAGTCTGATAATGCC
195 TTAAATTTGAACAAAATTTTATAGCTCAGATTGCTTGATTGTTTGCGTTTAAGTCTGATAACACC
79549586 TCGTATCCTATCTCGGCGTT
260 TCGTATCCTATCTCGGCGTT
*
79549606 GGACACGGGT
1 GGACATGGGT
79549616 AGAGGGTGTT
Statistics
Matches: 258, Mismatches: 29, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
278 183 0.71
279 75 0.29
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (279 bp):
GGACATGGGTGTGTTGAAGACACACGGGCTTGTCACTATGTCCACATGGGTGTATGGCTCCACTT
CATGGAAAAAAATTCATAAATTTTTCCCGAACTTTCCAAAGTTCTCGGTTTAGTCCCGAATTACG
TTCATAGCACGTTTAAAGCCTCGTAGGCCCAAATAAGGGACTTTAAGATAGAAATTGAAAAGCTT
TAAATTTGAACAAAATTTTATAGCTCAGATTGCTTGATTGTTTGCGTTTAAGTCTGATAACACCT
CGTATCCTATCTCGGCGTT
Found at i:79550152 original size:42 final size:41
Alignment explanation
Indices: 79550105--79550242 Score: 141
Period size: 42 Copynumber: 3.3 Consensus size: 41
79550095 CTTGATACAC
*
79550105 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTA
1 AATGCAATGAAAAGTAAATAGACCTCCACACCT-GGCCTTTA
* * * * **
79550147 AATGCAATGAAAAGTGAATTGACCTTCACACTTGGGCCACTA
1 AATGCAATGAAAAGTAAATAGACCTCCACACCT-GGCCTTTA
* * * * *
79550189 AATGTAATGAAAAGTAAATAAACCTCTACATCTGGGCTTCTA
1 AATGCAATGAAAAGTAAATAGACCTCCACACCTGGCCTT-TA
79550231 AATGCAATGAAA
1 AATGCAATGAAA
79550243 CACACCTAGG
Statistics
Matches: 76, Mismatches: 19, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
41 3 0.04
42 73 0.96
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.24
Consensus pattern (41 bp):
AATGCAATGAAAAGTAAATAGACCTCCACACCTGGCCTTTA
Found at i:79550304 original size:42 final size:42
Alignment explanation
Indices: 79550255--79550434 Score: 245
Period size: 42 Copynumber: 4.3 Consensus size: 42
79550245 CACCTAGGTA
*
79550255 TCTAAATGTAATGAAAAGTTAATGGACCTCCACACTTGGGCC
1 TCTAAATGTAATGAAAAGTAAATGGACCTCCACACTTGGGCC
* * * * *
79550297 TTTAAATGCAATGAAAAGTAAATGGACCTCTACATTTGGGGC
1 TCTAAATGTAATGAAAAGTAAATGGACCTCCACACTTGGGCC
* * * *
79550339 TCTAAGTGCAATGAAAAGTGAATGGACCTCCACACCTGGGCC
1 TCTAAATGTAATGAAAAGTAAATGGACCTCCACACTTGGGCC
* *
79550381 TCTAAATGTAATGAAAAGTAAATGGACCTCCATACTT-GGAC
1 TCTAAATGTAATGAAAAGTAAATGGACCTCCACACTTGGGCC
79550422 TCTAAATGTAATG
1 TCTAAATGTAATG
79550435 GATGCTTTCC
Statistics
Matches: 119, Mismatches: 19, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
41 16 0.13
42 103 0.87
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (42 bp):
TCTAAATGTAATGAAAAGTAAATGGACCTCCACACTTGGGCC
Found at i:79550328 original size:112 final size:112
Alignment explanation
Indices: 79550131--79550354 Score: 306
Period size: 112 Copynumber: 2.0 Consensus size: 112
79550121 AATGGACCTC
* * * * *
79550131 CACACCTAGGCCTTTAAATGCAATGAAAAGTGAATTGACCTTCACACTTGGGCCACTAAATGTAA
1 CACACCTAGGCATCTAAATGCAATGAAAAGTGAATGGACCTCCACACTTGGGCCACTAAATGCAA
79550196 TGAAAAGTAAATAAACCTCTACATCT-GGGCTTCTAAATGCAATGAAA
66 TGAAAAGTAAATAAACCTCTACATCTGGGGC-TCTAAATGCAATGAAA
* * * **
79550243 CACACCTAGGTATCTAAATGTAATGAAAAGTTAATGGACCTCCACACTTGGGCCTTTAAATGCAA
1 CACACCTAGGCATCTAAATGCAATGAAAAGTGAATGGACCTCCACACTTGGGCCACTAAATGCAA
** * *
79550308 TGAAAAGTAAATGGACCTCTACATTTGGGGCTCTAAGTGCAATGAAA
66 TGAAAAGTAAATAAACCTCTACATCTGGGGCTCTAAATGCAATGAAA
79550355 AGTGAATGGA
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
112 93 0.96
113 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (112 bp):
CACACCTAGGCATCTAAATGCAATGAAAAGTGAATGGACCTCCACACTTGGGCCACTAAATGCAA
TGAAAAGTAAATAAACCTCTACATCTGGGGCTCTAAATGCAATGAAA
Found at i:79550394 original size:154 final size:154
Alignment explanation
Indices: 79550105--79550396 Score: 406
Period size: 154 Copynumber: 1.9 Consensus size: 154
79550095 CTTGATACAC
* *
79550105 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTAAATGCAATGAAAAGTGAATTGAC
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTAAATGCAATGAAAAGTAAATGGAC
* * * *
79550170 CTTCACACTTGGGCCACTAAATGTAATGAAAAGTAAATAAACCTCTACATCTGGGCTTCTAAATG
66 CTTCACACTTGGGCCACTAAATGCAATGAAAAGTAAATAAACCTCCACACCTGGGCCTCTAAATG
79550235 CAATGAAACACACCTAGGTATCTA
131 CAATGAAACACACCTAGGTATCTA
* * * *
79550259 AATGTAATGAAAAGTTAATGGACCTCCACACTTGGGCCTTTAAATGCAATGAAAAGTAAATGGAC
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTAAATGCAATGAAAAGTAAATGGAC
* * * * * **
79550324 C-TCTACATTTGGGGCTCTAAGTGCAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTAAAT
66 CTTC-ACACTTGGGCCACTAAATGCAATGAAAAGTAAATAAACCTCCACACCTGGGCCTCTAAAT
*
79550388 GTAATGAAA
130 GCAATGAAA
79550397 AGTAAATGGA
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
153 2 0.02
154 117 0.98
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (154 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTAGGCCTTTAAATGCAATGAAAAGTAAATGGAC
CTTCACACTTGGGCCACTAAATGCAATGAAAAGTAAATAAACCTCCACACCTGGGCCTCTAAATG
CAATGAAACACACCTAGGTATCTA
Found at i:79557744 original size:68 final size:67
Alignment explanation
Indices: 79557672--79557821 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79557662 CATCATGTGT
* * * *
79557672 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TGTA-TACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79557734 ATGTAG
62 ATGTAG
** * *
79557740 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79557805 AG
66 AG
79557807 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79557822 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 5 0.07
67 25 0.36
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79557777 original size:64 final size:64
Alignment explanation
Indices: 79557696--79557879 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
79557686 AGACATTATG
* *
79557696 ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79557760 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TGTA-TACACCATGTAGACAAGAGAGCTACGAGAT
79557825 AA
63 AA
* * * * * *
79557827 ACTG--GCTAGGTCACACGGGTGGTACTAAGTGTTCACCATGT-GCACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAG-ACAAGAGAGC
79557880 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTATACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79564299 original size:30 final size:30
Alignment explanation
Indices: 79564263--79564321 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
79564253 ACAGGATGTT
79564263 AGGCTCGGTATCAATCATATAACTATCATC
1 AGGCTCGGTATCAATCATATAACTATCATC
79564293 AGGCTCGGTATCAATCATATAACTATCAT
1 AGGCTCGGTATCAATCATATAACTATCAT
79564322 ACATACATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.31
Consensus pattern (30 bp):
AGGCTCGGTATCAATCATATAACTATCATC
Found at i:79573363 original size:49 final size:49
Alignment explanation
Indices: 79573310--79573406 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
79573300 TATTACAACT
*
79573310 TAAAACCCAAAATTAAGTCAGAATATAAAATAATAAAAATAAACTAACC
1 TAAAACCCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACC
79573359 TAAAACCCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAAC
1 TAAAACCCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAAC
79573407 TTAGAAAAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.63, C:0.13, G:0.03, T:0.21
Consensus pattern (49 bp):
TAAAACCCAAAATTAAATCAGAATATAAAATAATAAAAATAAACTAACC
Found at i:79574820 original size:101 final size:100
Alignment explanation
Indices: 79574671--79574914 Score: 327
Period size: 101 Copynumber: 2.4 Consensus size: 100
79574661 GGTTGCTGTG
* *
79574671 TGCTGATCCCCGATT-ATGGGTGTGCTATGTGCG-TGATCCACCATATCTTTGAAATGTGAAAGG
1 TGCTGATCCCCGATTCATTGGTGTGCTA-ATGCGAT-ATCCACCATATCTTTGAAATGTGAAAGG
79574734 GGGTTGCTATGTGCTGATTCCCCCGA-GGGTTGCTAAC
64 GGGTTGCTAT-TGCTGATTCCCCCGAGGGGTTGCTAAC
*
79574771 TGCTGATTCCCCGGTTCATTGGTGTGCTAATGCGATATCCACCATATCTTTGAAATGTGAAAGGG
1 TGCTGA-TCCCCGATTCATTGGTGTGCTAATGCGATATCCACCATATCTTTGAAATGTGAAAGGG
* *
79574836 GGTTGCTATTTCTGATTCCCCCGAGGGGTTGCTAAG
65 GGTTGCTATTGCTGATTCCCCCGAGGGGTTGCTAAC
* * *
79574872 TGATGAT-CCCGATTCAGTGGTGGTGCTAAGTGCGAGAT-CACCA
1 TGCTGATCCCCGATTCATTGGT-GTGCTAA-TGCGATATCCACCA
79574915 ATAACGGTTA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
99 12 0.09
100 33 0.26
101 72 0.56
102 12 0.09
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (100 bp):
TGCTGATCCCCGATTCATTGGTGTGCTAATGCGATATCCACCATATCTTTGAAATGTGAAAGGGG
GTTGCTATTGCTGATTCCCCCGAGGGGTTGCTAAC
Found at i:79582225 original size:104 final size:104
Alignment explanation
Indices: 79582045--79582311 Score: 437
Period size: 104 Copynumber: 2.6 Consensus size: 104
79582035 TGTATATAAA
** * * *
79582045 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
79582109 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
79582149 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
79582214 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
79582253 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
79582312 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
104 151 0.99
105 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:79583928 original size:69 final size:67
Alignment explanation
Indices: 79583853--79583988 Score: 182
Period size: 67 Copynumber: 2.0 Consensus size: 67
79583843 TCACCAGATA
* * * * *
79583853 CAGATATTGTGGCTAGGCCACCAGAACATATATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAAC--AGATATATGTGGCGAAGCCACCAGATAGCAGCGAGG
79583918 CTGC
64 CTGC
* * *
79583922 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATAGTAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATAGCAGCGAGGCT
79583987 GC
66 GC
79583989 TAGAACGCTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
67 36 0.61
69 23 0.39
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATAGCAGCGAGGCT
GC
Found at i:79583970 original size:27 final size:26
Alignment explanation
Indices: 79583922--79583973 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79583912 GCGAGGCTGC
*
79583922 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79583948 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79583974 TAGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79584645 original size:27 final size:27
Alignment explanation
Indices: 79584615--79584756 Score: 205
Period size: 27 Copynumber: 5.3 Consensus size: 27
79584605 ATGGCAAAAT
* * *
79584615 GGTAATTTTATCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79584642 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
79584669 GGTATTTCTACCCTACAAGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
79584696 GGTAATTCTATCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
79584723 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
79584750 GGTAATT
1 GGTAATT
79584757 TTACAACTTA
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
26 3 0.03
27 96 0.94
28 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:79590566 original size:23 final size:20
Alignment explanation
Indices: 79590517--79590566 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
79590507 ATGACATTAG
*
79590517 ACAATTAAATAAATCAATGC
1 ACAAATAAATAAATCAATGC
*
79590537 ACGAATAAATAAATCTAATATGC
1 ACAAATAAATAAATC--A-ATGC
79590560 ACAAATA
1 ACAAATA
79590567 CTAAAAATCC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 13 0.54
22 1 0.04
23 10 0.42
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.24
Consensus pattern (20 bp):
ACAAATAAATAAATCAATGC
Found at i:79596386 original size:24 final size:23
Alignment explanation
Indices: 79596358--79596477 Score: 82
Period size: 24 Copynumber: 5.0 Consensus size: 23
79596348 TTTACCGATA
*
79596358 TATCAGCTCGAAAGAGCATACTGT
1 TATCAGCTC-AAAGAGCTTACTGT
*
79596382 TATCAGCTCATAAGAGCTTACTAT
1 TATCAGCTCA-AAGAGCTTACTGT
* * **
79596406 TTTTAGCTCGTCAGAGCTTA-TCGT
1 TATCAGCTC-AAAGAGCTTACT-GT
* *
79596430 T-TCAGCTCAATAGAGCGTATTGT
1 TATCAGCTCAA-AGAGCTTACTGT
79596453 CTATCAGCTCAAGAGGAGCTTACTG
1 -TATCAGCTCAA-A-GAGCTTACTG
79596478 ATCATAGCTC
Statistics
Matches: 74, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
23 17 0.23
24 39 0.53
25 10 0.14
26 8 0.11
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (23 bp):
TATCAGCTCAAAGAGCTTACTGT
Found at i:79596444 original size:23 final size:25
Alignment explanation
Indices: 79596418--79596474 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
79596408 TTAGCTCGTC
*
79596418 AGAGCTTATCGT-T-TCAGCTCAAT
1 AGAGCTTATCGTCTATCAGCTCAAG
* *
79596441 AGAGCGTATTGTCTATCAGCTCAAG
1 AGAGCTTATCGTCTATCAGCTCAAG
79596466 AGGAGCTTA
1 A-GAGCTTA
79596475 CTGATCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 10 0.37
24 1 0.04
25 10 0.37
26 6 0.22
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (25 bp):
AGAGCTTATCGTCTATCAGCTCAAG
Found at i:79602879 original size:24 final size:24
Alignment explanation
Indices: 79602838--79602953 Score: 101
Period size: 24 Copynumber: 4.8 Consensus size: 24
79602828 CAACTCGTAT
79602838 GAGCTTACTGATATATCAGCTTGTAA
1 GAGCTTACTG-T-TATCAGCTTGTAA
* *
79602864 GGGCTTATTGTTATCAGCTTGTAA
1 GAGCTTACTGTTATCAGCTTGTAA
* * *
79602888 GAGCTTACTGTTTTCAGCTCGTCA
1 GAGCTTACTGTTATCAGCTTGTAA
** **
79602912 GAGCTTACCATT-TCAGC-TCAATA
1 GAGCTTACTGTTATCAGCTTGTA-A
79602935 GAGCTTACTGTCTATCAGC
1 GAGCTTACTGT-TATCAGC
79602954 CCAGGAGGAG
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
23 15 0.21
24 43 0.60
25 6 0.08
26 8 0.11
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (24 bp):
GAGCTTACTGTTATCAGCTTGTAA
Found at i:79603335 original size:110 final size:110
Alignment explanation
Indices: 79603142--79603366 Score: 450
Period size: 110 Copynumber: 2.0 Consensus size: 110
79603132 TGTTTATATG
79603142 ATTGAGAGTGAAATGTTACAAATGATGTACATGATATATTAATTTGATATGATACACTGATGTAT
1 ATTGAGAGTGAAATGTTACAAATGATGTACATGATATATTAATTTGATATGATACACTGATGTAT
79603207 GTAATTGAGATAAAGGTTGATTATATGTATTTATGAGACTAACAT
66 GTAATTGAGATAAAGGTTGATTATATGTATTTATGAGACTAACAT
79603252 ATTGAGAGTGAAATGTTACAAATGATGTACATGATATATTAATTTGATATGATACACTGATGTAT
1 ATTGAGAGTGAAATGTTACAAATGATGTACATGATATATTAATTTGATATGATACACTGATGTAT
79603317 GTAATTGAGATAAAGGTTGATTATATGTATTTATGAGACTAACAT
66 GTAATTGAGATAAAGGTTGATTATATGTATTTATGAGACTAACAT
79603362 ATTGA
1 ATTGA
79603367 TGAATGGTCG
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 115 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.37
Consensus pattern (110 bp):
ATTGAGAGTGAAATGTTACAAATGATGTACATGATATATTAATTTGATATGATACACTGATGTAT
GTAATTGAGATAAAGGTTGATTATATGTATTTATGAGACTAACAT
Found at i:79607835 original size:67 final size:67
Alignment explanation
Indices: 79607716--79607843 Score: 220
Period size: 67 Copynumber: 1.9 Consensus size: 67
79607706 TATACAAAGT
*
79607716 CTCATGTCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCTGAT
1 CTCACGTCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCTGAT
79607781 GC
66 GC
* **
79607783 CTCACGTCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTCACATATCAACGC
1 CTCACGTCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGC
79607844 CAATGCCATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 57 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (67 bp):
CTCACGTCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCTGAT
GC
Found at i:79607869 original size:48 final size:48
Alignment explanation
Indices: 79607798--79608015 Score: 283
Period size: 48 Copynumber: 4.5 Consensus size: 48
79607788 GTCAGTGCCG
*
79607798 ATGCCATGTCCCAGACATGGTCTTACACTGGTTCACATATCAACGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCA
* * *
79607846 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATATAAACGCTA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCA
* * * * * *
79607894 ATGCCATGTCTCAGACATGGTCTTACACAGGCTCATATATCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCA
* * ** * * *
79607942 ACGCCATGTCCCAGACATGGTATTACAAGGGATCACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCA
79607990 ATGCCATGTCCCAGACATGGTCTTAC
1 ATGCCATGTCCCAGACATGGTCTTAC
79608016 TCGGGATCTC
Statistics
Matches: 145, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 145 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCCA
Found at i:79611748 original size:40 final size:39
Alignment explanation
Indices: 79611711--79611880 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 39
79611701 GCTACTCGTT
* *
79611711 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTT-TAGTAACTCGCA
*
79611751 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCC-GGTTTAGTAACTCGCA
*
79611791 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
* * * * *
79611831 TC-AATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTTGCA
1 -CAAATGCCTTCGGGACTTAACCCGG-TTTAGTAACTCGCA
79611870 CAAATGCCTTC
1 CAAATGCCTTC
79611881 AGATCTTAGT
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 30 0.26
40 80 0.70
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGTTTAGTAACTCGCA
Found at i:79613140 original size:56 final size:56
Alignment explanation
Indices: 79613073--79613248 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
79613063 TATTAGTTTA
79613073 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79613129 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
79613185 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79613241 TTGCCCAT
1 TTGCCCAT
79613249 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:79618928 original size:48 final size:48
Alignment explanation
Indices: 79618873--79619141 Score: 297
Period size: 48 Copynumber: 5.6 Consensus size: 48
79618863 TGTCAGTGTC
** * *
79618873 GATGCCATGTCCCTTACATGGTCTTACACTAGCACACATATCAACGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
* * *
79618921 GATGCCATGTCCCAAACATGGTCTTGCTCTGGCTCACATATCAACGGC-
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAC-GCT
* * * * * *
79618969 AATGCCATGTCCTAGACATGGTCTTATACTGGCTCACATATTAACACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
** * * * * *
79619017 GATGCCATGTCTGAAAGATGGTCTTACACGGGCTCATATATCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
* * * *
79619065 GTTGCCATGTCCAAGACATGGTCTTACACGGGCTCACATATCAACGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
*
79619113 AATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
79619142 GGGACCTCAT
Statistics
Matches: 182, Mismatches: 37, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
47 1 0.01
48 179 0.98
49 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGCT
Found at i:79622801 original size:26 final size:26
Alignment explanation
Indices: 79622771--79622823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
79622761 AACACATCTA
*
79622771 TATCGCAGCAAGGCTGCCAATAACAG
1 TATCGCAGCAAAGCTGCCAATAACAG
*
79622797 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAATAACAG
79622823 T
1 T
79622824 GTAACAGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAACAG
Found at i:79622831 original size:26 final size:26
Alignment explanation
Indices: 79622776--79622831 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
79622766 ATCTATATCG
* **
79622776 CAGCAAGGCTGCCAATAACAGTATCG
1 CAGCAAAGCTGCCAATAACAGTATAA
* *
79622802 CAGCAAAGCTGCCAGTAACAGTGTAA
1 CAGCAAAGCTGCCAATAACAGTATAA
79622828 CAGC
1 CAGC
79622832 TTAAAATAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.27, G:0.23, T:0.14
Consensus pattern (26 bp):
CAGCAAAGCTGCCAATAACAGTATAA
Found at i:79623796 original size:48 final size:48
Alignment explanation
Indices: 79623743--79623846 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
79623733 TGTGAGCTAG
*
79623743 TGTAAGACATGTCTGGGACATGCATCGGCATAGATATATGAGAGCCAA
1 TGTAAGACATGTCTGAGACATGCATCGGCATAGATATATGAGAGCCAA
* *
79623791 TGTAAGACATGTCTGAGACATGCATCGGCATGGATATATGAGAGCCAG
1 TGTAAGACATGTCTGAGACATGCATCGGCATAGATATATGAGAGCCAA
79623839 TGTAAGAC
1 TGTAAGAC
79623847 CATATCTAGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (48 bp):
TGTAAGACATGTCTGAGACATGCATCGGCATAGATATATGAGAGCCAA
Found at i:79629329 original size:46 final size:46
Alignment explanation
Indices: 79629212--79629431 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 46
79629202 AGTGTTATGT
* *
79629212 GAGCTAGTGTAAGACATGTCTGCGACATGCATCAGCCACATT-ATGA-AA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--GCATTGA-GAGAA
* * * *
79629260 -TGCTAGTGTAAGACATGTTTGGGACATGCATTGGCATTGAGACAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAGAA
* * * *
79629305 GAGCTAGTTTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-GAA
* *
79629352 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC--T-ACGAGAT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GAGAA
** * *
79629395 GTCCTAGTGTAAAACATGTCTGGGACATGCATTGGCA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCA
79629432 CAGATATATG
Statistics
Matches: 142, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
43 2 0.01
44 38 0.27
45 3 0.02
46 70 0.49
47 29 0.20
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAGAA
Found at i:79629448 original size:92 final size:91
Alignment explanation
Indices: 79629215--79629482 Score: 256
Period size: 92 Copynumber: 2.9 Consensus size: 91
79629205 GTTATGTGAG
* * * * *
79629215 CTAGTGTAAGACATGTCTGCGACATGCATCAGCCACAT-TATGAAATGCTAGTGTAAGACATGTT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATATG-AA-GCCAGTGTAAGACATGTC
* *
79629279 TGGGACATGCATTGGCATTGAGACAAGAG
64 TGGGACATGCATCGGCA-TGAGACAAGAC
* * * *
79629308 CTAGTTTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AAGCCAGTGTAAGACATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATATATGAAGCCAGTGTAAGACATGTCT
* * *
79629372 GGGACATGCATCGGC-T-ACGAGATGTC
65 GGGACATGCATCGGCATGA-GACAAGAC
* * **
79629398 CTAGTGTAAAACATGTCTGGGACATGCATTGGCACAGATATATGAGAGCCAGTGTAAGACCATAA
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGC-CAGATATATGA-AGCCAGTGTAAGA-CATGT
*
79629463 CTGGGATATAGCATCGGCAT
63 CTGGGACAT-GCATCGGCAT
79629483 CAATATTTGT
Statistics
Matches: 143, Mismatches: 23, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
89 1 0.01
90 40 0.28
91 2 0.01
92 44 0.31
93 44 0.31
94 9 0.06
95 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (91 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATATGAAGCCAGTGTAAGACATGTCTG
GGACATGCATCGGCATGAGACAAGAC
Found at i:79629467 original size:139 final size:138
Alignment explanation
Indices: 79629208--79629480 Score: 309
Period size: 139 Copynumber: 2.0 Consensus size: 138
79629198 CACTAGTGTT
* * * * *
79629208 ATGTGAGCTAGTGTAAGACATGTCTGCGACATGCATCAGCCACATTATGAAATGCTAGTGTAAGA
1 ATGTAAGCCAGTGTAAGACATGTCTGCGACATGCATCAGCCACATGATG--ATCCTAGTGTAAAA
* ** * * **
79629273 CATGTTTGGGACATGCATTGGCATTGAGACAAGAGCTAGTTTAAGACATGTCTGGGACAT-GCAT
64 CATGTCTGGGACATGCATTGGCACAGAGACAAGAGCCAGTGTAAGACATAACTGGGACATAGCAT
79629337 CGGCCTCGAG
129 CGGCCTCGAG
* * *
79629347 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-TCCTAGTGTAAAAC
1 ATGTAAGCCAGTGTAAGACATGTCTGCGACATGCATCAGCCAC-ATGATGATCCTAGTGTAAAAC
* * *
79629410 ATGTCTGGGACATGCATTGGCACAGATATATGAGAGCCAGTGTAAGACCATAACTGGGATATAGC
65 ATGTCTGGGACATGCATTGGCACAGAGACA--AGAGCCAGTGTAAGA-CATAACTGGGACATAGC
79629475 ATCGGC
127 ATCGGC
79629481 ATCAATATTT
Statistics
Matches: 111, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
136 37 0.33
138 13 0.12
139 52 0.47
140 9 0.08
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (138 bp):
ATGTAAGCCAGTGTAAGACATGTCTGCGACATGCATCAGCCACATGATGATCCTAGTGTAAAACA
TGTCTGGGACATGCATTGGCACAGAGACAAGAGCCAGTGTAAGACATAACTGGGACATAGCATCG
GCCTCGAG
Found at i:79635594 original size:32 final size:32
Alignment explanation
Indices: 79635558--79635624 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
79635548 GCATCAAAAT
79635558 GTCTAAAACAATAGTCAAAATACCATATTCAA
1 GTCTAAAACAATAGTCAAAATACCATATTCAA
*
79635590 GTCTAAAACAATAGTCCAAATACCATATTCAA
1 GTCTAAAACAATAGTCAAAATACCATATTCAA
79635622 GTC
1 GTC
79635625 CACATGCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.25
Consensus pattern (32 bp):
GTCTAAAACAATAGTCAAAATACCATATTCAA
Found at i:79635626 original size:19 final size:19
Alignment explanation
Indices: 79635570--79635626 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
79635560 CTAAAACAAT
*
79635570 AGTCAAAATACCATATTCA
1 AGTCCAAATACCATATTCA
*
79635589 AGTCTAAA-A-CA-A-T--
1 AGTCCAAATACCATATTCA
79635602 AGTCCAAATACCATATTCA
1 AGTCCAAATACCATATTCA
79635621 AGTCCA
1 AGTCCA
79635627 CATGCTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
13 7 0.23
14 1 0.03
15 3 0.10
16 2 0.07
17 3 0.10
18 1 0.03
19 13 0.43
ACGTcount: A:0.46, C:0.23, G:0.07, T:0.25
Consensus pattern (19 bp):
AGTCCAAATACCATATTCA
Found at i:79641467 original size:98 final size:98
Alignment explanation
Indices: 79641292--79641477 Score: 257
Period size: 98 Copynumber: 1.9 Consensus size: 98
79641282 GTTTGATAGT
* * * * * *
79641292 GAATTAGTTTGGAATCTATTGTTTCCCATTCTCTTTTTAATTAGTAAACAACTAATGTTAAGTCA
1 GAATCAGTTTGGAATCCATTATTTCCCATTCTCCTCTTAATTAGTAAACAACTAATGCTAAGTCA
*
79641357 CCAAAAACTTTTAAAACACTAATGCCTTGTTTG
66 CCAAAAAATTTTAAAACACTAATGCCTTGTTTG
* * **
79641390 GAATCAGTTTGGAATCCCTTATTTCCCATTCTCCTCTTAATTGGTAAACAACTAACT-CTGGGTC
1 GAATCAGTTTGGAATCCATTATTTCCCATTCTCCTCTTAATTAGTAAACAACTAA-TGCTAAGTC
79641454 ACCAAAAAATTTTAAAACACTAAT
65 ACCAAAAAATTTTAAAACACTAAT
79641478 CTTTTTCTCA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
98 75 0.99
99 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (98 bp):
GAATCAGTTTGGAATCCATTATTTCCCATTCTCCTCTTAATTAGTAAACAACTAATGCTAAGTCA
CCAAAAAATTTTAAAACACTAATGCCTTGTTTG
Found at i:79646871 original size:4 final size:4
Alignment explanation
Indices: 79646856--79646901 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
79646846 CAAATGAGCA
* * * *
79646856 AATG AGTG AATG AATG GATG GATG AATG AATG AATG AATG ATTG AA
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AA
79646902 ATTGGGGCAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.26
Consensus pattern (4 bp):
AATG
Found at i:79649114 original size:17 final size:18
Alignment explanation
Indices: 79649088--79649125 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
79649078 CAGACACAAG
79649088 AAAAACAAAGTC-AATGA
1 AAAAACAAAGTCAAATGA
*
79649105 AAAAATAAAGTCAAATGA
1 AAAAACAAAGTCAAATGA
79649123 AAA
1 AAA
79649126 GAAATGCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.68, C:0.08, G:0.11, T:0.13
Consensus pattern (18 bp):
AAAAACAAAGTCAAATGA
Found at i:79651230 original size:19 final size:20
Alignment explanation
Indices: 79651208--79651255 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
79651198 TACAAGCGTG
79651208 AATAAATATA-AAACATT-AA
1 AATAAATATACAAA-ATTGAA
*
79651227 AATAAAT-TACATAATTGAA
1 AATAAATATACAAAATTGAA
79651246 AATAAATATA
1 AATAAATATA
79651256 TATGGTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.20
19 18 0.72
20 2 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (20 bp):
AATAAATATACAAAATTGAA
Found at i:79651758 original size:22 final size:22
Alignment explanation
Indices: 79651730--79651777 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
79651720 TTTTGTGTTC
*
79651730 AAAATCA-AAGTTTTCTTTTAAA
1 AAAATCACAACTTTT-TTTTAAA
*
79651752 AAAATCACTACTTTTTTTTAAA
1 AAAATCACAACTTTTTTTTAAA
79651774 AAAA
1 AAAA
79651778 AATCAAAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (22 bp):
AAAATCACAACTTTTTTTTAAA
Found at i:79651789 original size:24 final size:23
Alignment explanation
Indices: 79651730--79651799 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 23
79651720 TTTTGTGTTC
79651730 AAAATCAAAG-TTTTCTTTT-AAA
1 AAAATCAAAGCTTTT-TTTTAAAA
*
79651752 AAAATCACTA-CTTTTTTTTAAAAA
1 AAAATCA-AAGCTTTTTTTT-AAAA
* *
79651776 AAAATCAAAGCTTTTATTTCAAA
1 AAAATCAAAGCTTTTTTTTAAAA
79651799 A
1 A
79651800 TAGTTGAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 11 0.28
23 10 0.26
24 18 0.46
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (23 bp):
AAAATCAAAGCTTTTTTTTAAAA
Found at i:79652188 original size:157 final size:154
Alignment explanation
Indices: 79651740--79652217 Score: 552
Period size: 156 Copynumber: 3.0 Consensus size: 154
79651730 AAAATCAAAG
* *
79651740 TTTTCTTTTAAAAAAATCACTACTTTTTTTTAAAAAAAAATCAAAGCTTTTATTTCAAAATAGTT
1 TTTTCTTTT-AAAAAATCACTACTTTTCTTT-----AAAATCAAAGCTTTTATTTCGAAATAGTT
* ** * *
79651805 GAAAAAAATATAAAAAAAATTATTTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAATAG
60 GAAAAAAA-AT--CAAACTTTA-TTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACTAA
79651870 TTTTTATTTTTAAAAATCTAAAC--TTTCTCTTT
121 TTTTTATTTTTAAAAATCTAAACTTTTTCTCTTT
* * *
79651902 TTTTC-TTTAAAAAATCACTACTTTTC-TTAAATATTAAAGTTTTTATTTCGAAATAATTGAAAA
1 TTTTCTTTTAAAAAATCACTACTTTTCTTTAAA-ATCAAAGCTTTTATTTCGAAATAGTTG-AAA
* * * * *
79651965 AGAAAAGTCAAAACTCTGTTTAAAATTTTTAAACTTTCCTTTAAAATAACTAAAAAAACAAATTT
64 A-AAAA-TC-AAACTTTATTTAAAA-ATTTAAACTTTCCTTTAAAATGACT-AAAAAACTAATTT
* *
79652030 TTATTTTTAAAAATCTAAACTTTTTGTTTTT
124 TTATTTTTAAAAATCTAAACTTTTTCTCTTT
*
79652061 TTTTCTTTTAAAAAATCACTACTTTTCTTTAAGATCAAAGCTTTTATTTCGAAATAGTTGAAAAA
1 TTTTCTTTTAAAAAATCACTACTTTTCTTTAAAATCAAAGCTTTTATTTCGAAATAGTTGAAAAA
**
79652126 AAATCAAACTTTATTTCAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACTTTTTTTTTTAT
66 AAATCAAACTTTATTT-AAAAATTTAAACTTTCCTTTAAAATGACTAAAAAAC--TAATTTTTAT
*
79652191 TTTTAAAAATCTAAACTTTCTC-CTTT
128 TTTTAAAAATCTAAACTTTTTCTCTTT
79652217 T
1 T
79652218 AAAAAAAAAT
Statistics
Matches: 271, Mismatches: 31, Indels: 34
0.81 0.09 0.10
Matches are distributed among these distances:
154 3 0.01
155 37 0.14
156 68 0.25
157 67 0.25
158 4 0.01
159 18 0.07
160 62 0.23
161 7 0.03
162 5 0.02
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.44
Consensus pattern (154 bp):
TTTTCTTTTAAAAAATCACTACTTTTCTTTAAAATCAAAGCTTTTATTTCGAAATAGTTGAAAAA
AAATCAAACTTTATTTAAAAATTTAAACTTTCCTTTAAAATGACTAAAAAACTAATTTTTATTTT
TAAAAATCTAAACTTTTTCTCTTT
Found at i:79653066 original size:34 final size:34
Alignment explanation
Indices: 79653018--79653149 Score: 174
Period size: 34 Copynumber: 3.9 Consensus size: 34
79653008 GCAAATACAT
* * * *
79653018 TCTGGGCCTAAGCCCATATCAGTAACAATAGCAG
1 TCTGGGCTTTAGCCCATTTCAGTAACAGTAGCAG
79653052 TCTGGGCTTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGGCTTTAGCCCATTTCAGTAACAGTAGCAG
* *
79653086 TCTGGGTTTTAGCCCATTTCAGTAATAGTAGCAG
1 TCTGGGCTTTAGCCCATTTCAGTAACAGTAGCAG
* * * *
79653120 TTTAGGCTTTAGCCCTTTTCAGTAATAGTA
1 TCTGGGCTTTAGCCCATTTCAGTAACAGTA
79653150 ATCAGTGTAG
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 88 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (34 bp):
TCTGGGCTTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:79653189 original size:18 final size:18
Alignment explanation
Indices: 79653139--79653197 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
79653129 TAGCCCTTTT
*
79653139 CAGTAATAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* * *
79653157 TAGTAACCA-TGATCAATG
1 CAGTAA-CAGTAATCAGTG
79653175 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
79653193 CAGTA
1 CAGTA
79653198 TGCAAGCAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 29 0.91
19 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:79653483 original size:23 final size:23
Alignment explanation
Indices: 79653456--79653514 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
79653446 ACCCTATGCA
*
79653456 ATGCAATATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
79653479 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
*
79653502 ATGCTAAAATACA
1 ATGC-AACATACA
79653515 GTCATACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 6 0.19
23 15 0.48
24 10 0.32
ACGTcount: A:0.46, C:0.15, G:0.12, T:0.27
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:79653586 original size:27 final size:26
Alignment explanation
Indices: 79653540--79653661 Score: 104
Period size: 27 Copynumber: 4.5 Consensus size: 26
79653530 GAACAAATCT
* * * *
79653540 GTCATTTTACCTTTCCGGGGTATTAC
1 GTCATTTTACCCTACAGGGGTATTTC
79653566 AGTCATTTTACCCTACAGGGGTATTTC
1 -GTCATTTTACCCTACAGGGGTATTTC
* *
79653593 GATCATTCTACCCTA-TGGGGATATTTC
1 G-TCATTTTACCCTACAGGGG-TATTTC
* *
79653620 GGTCATTTTACCCTA-TGAGGGTGTTTC
1 -GTCATTTTACCCTACAG-GGGTATTTC
79653647 GATCATTTTACCCTA
1 G-TCATTTTACCCTA
79653662 TGAGGGCAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.07
27 72 0.88
28 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGGTATTTC
Found at i:79653662 original size:27 final size:27
Alignment explanation
Indices: 79653568--79653667 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
79653558 GGTATTACAG
*
79653568 TCATTTTACCCTA-CAGGGGTATTTCGA
1 TCATTTTACCCTATGA-GGGTATTTCGA
* *
79653595 TCATTCTACCCTATG-GGGATATTTCGG
1 TCATTTTACCCTATGAGGG-TATTTCGA
*
79653622 TCATTTTACCCTATGAGGGTGTTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGA
79653649 TCATTTTACCCTATGAGGG
1 TCATTTTACCCTATGAGGG
79653668 CAAAATCATC
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.05
27 58 0.91
28 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGA
Found at i:79653678 original size:27 final size:27
Alignment explanation
Indices: 79653648--79653764 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 27
79653638 GGGTGTTTCG
*
79653648 ATCATTTTACCCTATGAGGGCAAAATC
1 ATCATTTTACCCTATAAGGGCAAAATC
* * *
79653675 ATCATTTCATCATATAAGGGCAAAATC
1 ATCATTTTACCCTATAAGGGCAAAATC
* * * * *
79653702 GTCATTTTATCAC-ATTATGGTAAAATC
1 ATCATTTTA-CCCTATAAGGGCAAAATC
* *
79653729 ATTATTTTATCAC-ATAAGGGCAAAATC
1 ATCATTTTA-CCCTATAAGGGCAAAATC
*
79653756 GTCATTTTA
1 ATCATTTTA
79653765 TTACATAAGG
Statistics
Matches: 70, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCCTATAAGGGCAAAATC
Found at i:79653680 original size:54 final size:54
Alignment explanation
Indices: 79653568--79653681 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
79653558 GGTATTACAG
** *
79653568 TCATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGGGGATATTTCGG
1 TCATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGGGGATAAATCGA
* * *
79653622 TCATTTTACCCTA-TGAGGGTGTTTCGATCATTTTACCCTATGAGGGCA-AAATC-A
1 TCATTTTACCCTACAG-GGGTATTTCGATCATTCTACCCTATG-GGG-ATAAATCGA
79653676 TCATTT
1 TCATTT
79653682 CATCATATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
53 1 0.02
54 43 0.84
55 6 0.12
56 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTTCGATCATTCTACCCTATGGGGATAAATCGA
Found at i:79653736 original size:81 final size:81
Alignment explanation
Indices: 79653664--79653965 Score: 419
Period size: 81 Copynumber: 3.7 Consensus size: 81
79653654 TTACCCTATG
* * * * * *
79653664 AGGGCAAAATCATCATTTCATCATATAAGGGCAAAATCGTCATTTTATCACATTATGGTAAAATC
1 AGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATC
*
79653729 ATTATTTTATCACATA
66 GTTATTTTATCACATA
* *
79653745 AGGGCAAAATCGTCATTTTATTACATAAGGGTAAAA-CTGTCATTTTATCATATGAGGGTAAAAT
1 AGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATC-GTCATTTTATCACATGAGGGTAAAAT
79653809 CGTTATTTTATCACATA
65 CGTTATTTTATCACATA
* * *
79653826 AGGGTAAAATCGTCATTTTATCACATAAGGGTAAAATTGTCATTTTATCACATGAGGGTAAAATT
1 AGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATC
*
79653891 GTAATTTGT-TCACATA
66 GTTATTT-TATCACATA
* * * *
79653907 AGGGTAAAATCGTCATTTTATCAGATGAGGGTAAAATCATCATTTTATCACATGAGGGT
1 AGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATGAGGGT
79653966 TCAAGTACGC
Statistics
Matches: 199, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 197 0.99
82 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (81 bp):
AGGGCAAAATCGTCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATGAGGGTAAAATC
GTTATTTTATCACATA
Found at i:79653765 original size:27 final size:27
Alignment explanation
Indices: 79653664--79653965 Score: 374
Period size: 27 Copynumber: 11.2 Consensus size: 27
79653654 TTACCCTATG
* * * *
79653664 AGGGCAAAATCATCATTTCATCATATA
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653691 AGGGCAAAATCGTCATTTTATCACATT
1 AGGGTAAAATCGTCATTTTATCACATA
* * *
79653718 ATGGTAAAATCATTATTTTATCACATA
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653745 AGGGCAAAATCGTCATTTTATTACATA
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653772 AGGGTAAAA-CTGTCATTTTATCATATG
1 AGGGTAAAATC-GTCATTTTATCACATA
*
79653799 AGGGTAAAATCGTTATTTTATCACATA
1 AGGGTAAAATCGTCATTTTATCACATA
79653826 AGGGTAAAATCGTCATTTTATCACATA
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653853 AGGGTAAAATTGTCATTTTATCACATG
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653880 AGGGTAAAATTGTAATTTGT-TCACATA
1 AGGGTAAAATCGTCATTT-TATCACATA
* *
79653907 AGGGTAAAATCGTCATTTTATCAGATG
1 AGGGTAAAATCGTCATTTTATCACATA
* *
79653934 AGGGTAAAATCATCATTTTATCACATG
1 AGGGTAAAATCGTCATTTTATCACATA
79653961 AGGGT
1 AGGGT
79653966 TCAAGTACGC
Statistics
Matches: 239, Mismatches: 32, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 235 0.98
28 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (27 bp):
AGGGTAAAATCGTCATTTTATCACATA
Found at i:79671202 original size:68 final size:66
Alignment explanation
Indices: 79671130--79671277 Score: 167
Period size: 67 Copynumber: 2.2 Consensus size: 66
79671120 CATCATGTGT
* * * * *
79671130 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGTGA-TACTA-TG-TGTACACC
1 ACAAGAGAGCTACG-G-CA-TAT-ATGTAGCTAGGTCGCATGCGTGACT-CCAGTGAAGGACACC
79671192 ATGTAG
61 ATGTAG
*
79671198 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGACTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGACTCCA-GTGAAGGACACCATGT
79671263 AG
65 AG
79671265 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
79671278 AAGATAAACT
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
64 23 0.33
65 4 0.06
66 3 0.04
67 26 0.37
68 14 0.20
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGACTCCAGTGAAGGACACCATGTA
G
Found at i:79678806 original size:20 final size:20
Alignment explanation
Indices: 79678773--79678817 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
79678763 AGCACATGTA
* *
79678773 TTCATAAAAGTTTAGAATTT
1 TTCATAAAAGTTTACAACTT
* *
79678793 TTCATCAAATTTTACAACTT
1 TTCATAAAAGTTTACAACTT
79678813 TTCAT
1 TTCAT
79678818 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (20 bp):
TTCATAAAAGTTTACAACTT
Found at i:79682259 original size:27 final size:27
Alignment explanation
Indices: 79682196--79682381 Score: 182
Period size: 27 Copynumber: 7.0 Consensus size: 27
79682186 AAGACCCCCG
* *
79682196 ATTTGTAAAATTATTGAAATA-CCCTG
1 ATTTGTAAAATTACTGAAATACCCCTA
**
79682222 GGTTGTAAAATTACTGAAATACCCCTA
1 ATTTGTAAAATTACTGAAATACCCCTA
* * * *
79682249 ATTTGTGAAATTA-TAAAAAAACCCTGA
1 ATTTGTAAAATTACTGAAATACCCCT-A
*
79682276 ATTTGTAAAATTACTAAAATACCCCTA
1 ATTTGTAAAATTACTGAAATACCCCTA
* *
79682303 ATTTGT-AAATTACTGAAATACCTCTG
1 ATTTGTAAAATTACTGAAATACCCCTA
* **
79682329 ATTTGTGAAATTACTGAAATACCCCCG
1 ATTTGTAAAATTACTGAAATACCCCTA
* *
79682356 ATTTGCAAAATTA-TCGAGATACCCCT
1 ATTTGTAAAATTACT-GAAATACCCCT
79682382 GTAGGGTAGG
Statistics
Matches: 133, Mismatches: 22, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
26 51 0.38
27 72 0.54
28 10 0.08
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCCTA
Found at i:79682360 original size:53 final size:52
Alignment explanation
Indices: 79682189--79682379 Score: 204
Period size: 53 Copynumber: 3.6 Consensus size: 52
79682179 GGTCGTTAAG
* **
79682189 ACCCCCGATTTGTAAAATTATTGAAATACCCTGGGTTGTAAAATTACTGAAAT
1 ACCCCCAATTTGTAAAATTA-TGAAATACCCTGATTTGTAAAATTACTGAAAT
* * * * *
79682242 ACCCCTAATTTGTGAAATTATAAAAAAACCCTGAATTTGTAAAATTACTAAAAT
1 ACCCCCAATTTGTAAAATTAT-GAAATACCCTG-ATTTGTAAAATTACTGAAAT
* *
79682296 ACCCCTAATTTGT-AAATTACTGAAATACCTCTGATTTGTGAAATTACTGAAAT
1 ACCCCCAATTTGTAAAATTA-TGAAATACC-CTGATTTGTAAAATTACTGAAAT
* * *
79682349 ACCCCCGATTTGCAAAATTATCGAGATACCC
1 ACCCCCAATTTGTAAAATTAT-GAAATACCC
79682380 CTGTAGGGTA
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.01
53 68 0.59
54 47 0.41
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (52 bp):
ACCCCCAATTTGTAAAATTATGAAATACCCTGATTTGTAAAATTACTGAAAT
Found at i:79682378 original size:80 final size:80
Alignment explanation
Indices: 79682189--79682381 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
79682179 GGTCGTTAAG
* **
79682189 ACCCCCGATTTGTAAAATTATTGAAATA-CCCTGGGTTGTAAAATTACTGAAATACCCCTAATTT
1 ACCCCCGATTTGTAAAATTATCGAAATACCCCTAAGTTGTAAAATTACTGAAATACCCCTAATTT
79682253 GTGAAATTATAAAAA
66 GTGAAATTATAAAAA
* * * * * *
79682268 AACCCTGAATTTGTAAAATTA-CTAAAATACCCCTAATTTGT-AAATTACTGAAATACCTCTGAT
1 ACCCCCG-ATTTGTAAAATTATC-GAAATACCCCTAAGTTGTAAAATTACTGAAATACCCCTAAT
* *
79682331 TTGTGAAATTACTGAAAT
64 TTGTGAAATTA-TAAAAA
* *
79682349 ACCCCCGATTTGCAAAATTATCGAGATACCCCT
1 ACCCCCGATTTGTAAAATTATCGAAATACCCCT
79682382 GTAGGGTAGG
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
79 5 0.05
80 70 0.75
81 18 0.19
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (80 bp):
ACCCCCGATTTGTAAAATTATCGAAATACCCCTAAGTTGTAAAATTACTGAAATACCCCTAATTT
GTGAAATTATAAAAA
Found at i:79683824 original size:47 final size:45
Alignment explanation
Indices: 79683751--79683876 Score: 128
Period size: 47 Copynumber: 2.7 Consensus size: 45
79683741 TCACTTGTGT
* * *
79683751 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGACA-CAATATGA
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCGG-CATCAAGACGA
* * *
79683797 GAGCCAGTGTAAGACCATGTCTAGGACATCGCACCGGCATCGAGACGA
1 GAGCTAGTGTAAGA-CATGTCT-GGACAT-GCATCGGCATCAAGACGA
*
79683845 GTGCTAGTGTAAGACATGTCTGGCACATGCAT
1 GAGCTAGTGTAAGACATGTCTGG-ACATGCAT
79683877 TGGCTGCTAG
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
46 17 0.26
47 26 0.39
48 23 0.35
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGGCATCAAGACGA
Found at i:79690937 original size:30 final size:30
Alignment explanation
Indices: 79690903--79690960 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
79690893 TTTTCGAGCA
*
79690903 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
79690933 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
79690961 GTGTAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:79691444 original size:45 final size:46
Alignment explanation
Indices: 79691330--79691451 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
79691320 ATATGAGAGC
*
79691330 CAGTGTAAGACCATGCCTGGGACATGGCATCACATCGAGACGAGTG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCACATCGAGACGAGTG
* * * *
79691376 CTAGTGTAAGA-CATGTTTAGGACAT-GCATC-CGATGCGAGATGTGT-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCAC-AT-CGAGACGAGTG
79691421 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
79691452 GACACCTTAC
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
44 10 0.16
45 20 0.31
46 25 0.39
47 9 0.14
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCACATCGAGACGAGTG
Found at i:79692417 original size:28 final size:28
Alignment explanation
Indices: 79692376--79692469 Score: 152
Period size: 28 Copynumber: 3.4 Consensus size: 28
79692366 ACACCGGCTA
79692376 GAACACGGGCGTGTCATGGTCGTGTGAG
1 GAACACGGGCGTGTCATGGTCGTGTGAG
* *
79692404 GAACATGGGTGTGTCATGGTCGTGTGAG
1 GAACACGGGCGTGTCATGGTCGTGTGAG
* *
79692432 GAACACGGGCATGCCATGGTCGTGTGAG
1 GAACACGGGCGTGTCATGGTCGTGTGAG
79692460 GAACACGGGC
1 GAACACGGGC
79692470 ATTGACACCA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.20, C:0.18, G:0.41, T:0.20
Consensus pattern (28 bp):
GAACACGGGCGTGTCATGGTCGTGTGAG
Found at i:79717810 original size:8 final size:8
Alignment explanation
Indices: 79717797--79717833 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
79717787 CGGCAAAAGT
79717797 CGAAATGC
1 CGAAATGC
*
79717805 CGAAATAC
1 CGAAATGC
*
79717813 CGAAAAGC
1 CGAAATGC
79717821 CGAAATGC
1 CGAAATGC
79717829 CGAAA
1 CGAAA
79717834 AGCTGAAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.46, C:0.24, G:0.22, T:0.08
Consensus pattern (8 bp):
CGAAATGC
Found at i:79717822 original size:16 final size:16
Alignment explanation
Indices: 79717797--79717841 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
79717787 CGGCAAAAGT
*
79717797 CGAAATGCCGAAATAC
1 CGAAAAGCCGAAATAC
*
79717813 CGAAAAGCCGAAATGC
1 CGAAAAGCCGAAATAC
*
79717829 CGAAAAGCTGAAA
1 CGAAAAGCCGAAA
79717842 GTTTGGCTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (16 bp):
CGAAAAGCCGAAATAC
Found at i:79717841 original size:8 final size:8
Alignment explanation
Indices: 79717791--79717841 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
79717781 TAGAATCGGC
*
79717791 AAAAGTCG
1 AAAAGCCG
*
79717799 AAATGCCG
1 AAAAGCCG
79717807 AAATA-CCG
1 AAA-AGCCG
79717815 AAAAGCCG
1 AAAAGCCG
*
79717823 AAATGCCG
1 AAAAGCCG
*
79717831 AAAAGCTG
1 AAAAGCCG
79717839 AAA
1 AAA
79717842 GTTTGGCTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
7 1 0.03
8 34 0.97
ACGTcount: A:0.49, C:0.20, G:0.22, T:0.10
Consensus pattern (8 bp):
AAAAGCCG
Found at i:79718138 original size:58 final size:57
Alignment explanation
Indices: 79718065--79718175 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
79718055 TGAATGTGAC
* *
79718065 TGGGCCTAAAAGGCCATATAAATGTGATTTGAGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAAAAGGCCATATAAATATGA-TTGAGCCTAATGGGCCAGATACAGGTGATT
** * * *
79718123 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAAAAGGCCATATAAATATGATTGAGCCTAATGGGCCAGATACAGGT
79718176 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (57 bp):
TGGGCCTAAAAGGCCATATAAATATGATTGAGCCTAATGGGCCAGATACAGGTGATT
Found at i:79718162 original size:28 final size:29
Alignment explanation
Indices: 79718052--79718166 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
79718042 GTGAGCAGGA
* **
79718052 ATATGAATGTGA-CTGGGCCTAAAAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
79718080 ATATAAATGTGATTTGAGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
79718109 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
79718138 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
79718166 A
1 A
79718167 GATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 45 0.61
30 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:79719743 original size:11 final size:11
Alignment explanation
Indices: 79719727--79719753 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
79719717 AGAGGTGTGA
79719727 GAGGCCATGCC
1 GAGGCCATGCC
79719738 GAGGCCATGCC
1 GAGGCCATGCC
79719749 GAGGC
1 GAGGC
79719754 ATCGGAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.33, G:0.41, T:0.07
Consensus pattern (11 bp):
GAGGCCATGCC
Found at i:79722655 original size:58 final size:57
Alignment explanation
Indices: 79722583--79722693 Score: 168
Period size: 57 Copynumber: 1.9 Consensus size: 57
79722573 TGAATGTGAC
* *
79722583 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAAATACAGGTGATT
* * *
79722641 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAAATACAGGT
79722694 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:79722680 original size:28 final size:29
Alignment explanation
Indices: 79722570--79722684 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
79722560 GTGAGCATGA
* *
79722570 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
79722598 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
79722627 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
79722656 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
79722684 A
1 A
79722685 AATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:79732710 original size:21 final size:20
Alignment explanation
Indices: 79732681--79732719 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
79732671 CCTTGAAACA
79732681 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
79732701 GGGCAACACGCCCGTGTGG
1 GGGC-ACACGCCCGTGTGG
79732720 TCATTATGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:79732900 original size:28 final size:28
Alignment explanation
Indices: 79732869--79732933 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
79732859 CGTGTCTATG
* *
79732869 GCCCGTGTCCCTCACACGGCCATGACAT
1 GCCCGTGTCCCTCACAAGGCCATGACAC
79732897 GCCCGTGTCCCTCACAAGGCCATGACAC
1 GCCCGTGTCCCTCACAAGGCCATGACAC
79732925 GCCCGTGTC
1 GCCCGTGTC
79732934 TTAGTCTGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.17, C:0.43, G:0.23, T:0.17
Consensus pattern (28 bp):
GCCCGTGTCCCTCACAAGGCCATGACAC
Found at i:79733990 original size:47 final size:45
Alignment explanation
Indices: 79733921--79734230 Score: 209
Period size: 46 Copynumber: 6.6 Consensus size: 45
79733911 TATAATACCA
79733921 ATGCCATGTCCCAGACATGGTCTTACACTGATTCATCCATCAAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGATTCAT-C-TCAAGCCG
* ** **
79733968 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACGTATCCGTGCAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-T-TCA--TCT-CAAGCCG
* ** **
79734018 ATGCCATGTCCTAGACATGGTCTTACACTGACACATCTTGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGATTCATC-TCAAGCCG
* * * * *
79734064 ATG-CATGTCCCAGACAT-GTTTTCCATTGGCTTACATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GATT-CATCTC-AAGCCG
* * * *
79734110 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GAT-TCATCTCAA-GCCG
* * * *
79734156 ATGCCATGTCCCAAACATGGTCTTACACTGGCTTACATCTCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GATT-CATCTC-AAGCCG
*
79734204 AT-TCATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
79734231 AGCACACAAA
Statistics
Matches: 209, Mismatches: 39, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
44 7 0.03
45 16 0.08
46 61 0.29
47 61 0.29
48 25 0.12
49 5 0.02
50 33 0.16
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGATTCATCTCAAGCCG
Found at i:79734043 original size:50 final size:48
Alignment explanation
Indices: 79733920--79734049 Score: 165
Period size: 50 Copynumber: 2.7 Consensus size: 48
79733910 GTATAATACC
*
79733920 AATGCCATGTCCCAGACATGGTCTTACACTGA-TTCATCCATCAAGCC
1 AATGCCATGTCCCAGACATGGTCTTACACTGACTTCATCCATCAAGCA
* * **
79733967 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCA-CGTATCCGTGCA
1 AATGCCATGTCCCAGACATGGTCTTACACTGACT-TCATC-CAT-CAAGCA
*
79734017 AATGCCATGTCCTAGACATGGTCTTACACTGAC
1 AATGCCATGTCCCAGACATGGTCTTACACTGAC
79734050 ACATCTTGTA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
47 31 0.43
48 2 0.03
49 5 0.07
50 34 0.47
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACACTGACTTCATCCATCAAGCA
Found at i:79734197 original size:94 final size:92
Alignment explanation
Indices: 79734062--79734233 Score: 263
Period size: 94 Copynumber: 1.8 Consensus size: 92
79734052 ATCTTGTAGC
* * * *
79734062 CGATGCATGTCCCAGACATGTTTTCCATTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACAT
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACAT
79734127 GTCTTACACTAGCTCTCGTCTCAATGT
66 GTCTTACACTAGCTCTCGTCTCAATGT
* * *
79734154 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTTACATCTCGAGGCTGATTCATGTCCCAGAC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAAC
79734219 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
79734234 ACACAAATAA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 5 0.07
93 13 0.18
94 53 0.75
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (92 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCTCTCGTCTCAATGT
Found at i:79740456 original size:21 final size:20
Alignment explanation
Indices: 79740427--79740465 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
79740417 CCTTGAAACA
79740427 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
79740447 GGGCAACACGCCCGTGTGG
1 GGGC-ACACGCCCGTGTGG
79740466 TCATTATGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.15, C:0.31, G:0.41, T:0.13
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:79741811 original size:46 final size:47
Alignment explanation
Indices: 79741617--79741922 Score: 220
Period size: 46 Copynumber: 6.5 Consensus size: 47
79741607 ATACCGATTA
* *
79741617 CATGTCCCAGATATGGTCTTACACTGG--CTCATCCATC-AAGTCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-C-TCGAGGTCGATG
* * * * *
79741663 CCATGTCCCAGACATGGTCTTATACTGACTCTCACATATCCATGTCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCT--CATCTCGAGGTCGATG
* * * * *
79741713 CCATGTCCCAGACATGGTCTTACACT-G-ACACATCTTGTA-GTTGATA
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCG-AGGTCGATG
*
79741759 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCGAGGTCGATG
* * * * * * *
79741805 CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATAC
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAGGTCGAT-G
* * * *
79741852 CATGTCCCAGACATGGTCTTACACTAGCTCTCATGAT-GTGGTTGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCAT-CTCGAGGTCGATG
*
79741899 CATGTCCTAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
79741923 AGCATACAAA
Statistics
Matches: 209, Mismatches: 36, Indels: 29
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.05
45 16 0.08
46 67 0.32
47 52 0.25
48 23 0.11
49 5 0.02
50 33 0.16
51 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAGGTCGATG
Found at i:79741899 original size:94 final size:92
Alignment explanation
Indices: 79741755--79741925 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 92
79741745 TCTTGTAGTT
* *
79741755 GATACATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCTAGACATG
1 GATACATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCGATGCATGTCCTAGACATG
79741820 TCTTACACTAGCTCTCGTCTCAATGCC
66 TCTTACACTAGCTCTCGTCTCAATGCC
* **
79741847 GATACCATGTCCCAGACATGGTCTTACACTAGCTCT-CATGAT-GTGGTTGATGCATGTCCTAGA
1 GATA-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATCGAGGCCGATGCATGTCCTAGA
79741910 CATGTCTTACACTAGC
62 CATGTCTTACACTAGC
79741926 ATACAAATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.20
94 50 0.71
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (92 bp):
GATACATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCCGATGCATGTCCTAGACATG
TCTTACACTAGCTCTCGTCTCAATGCC
Found at i:79744804 original size:22 final size:23
Alignment explanation
Indices: 79744779--79744832 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
79744769 GATAAAGGCA
*
79744779 GTAAATGAGGAGGAAAACAA-GG
1 GTAAATGAGGACGAAAACAAGGG
*
79744801 GTAAATGAGGACGAAAAGAAGGG
1 GTAAATGAGGACGAAAACAAGGG
*
79744824 GTATATGAG
1 GTAAATGAG
79744833 TGTCTGCGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.46, C:0.04, G:0.37, T:0.13
Consensus pattern (23 bp):
GTAAATGAGGACGAAAACAAGGG
Done.