Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 236 of 362
Found at i:79752511 original size:45 final size:49
Alignment explanation
Indices: 79752435--79752539 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 49
79752425 GTCATGATCA
*
79752435 GTAAGCTCCTATTGAGCTGATGAACAGTAAGCTCTAATGAGCTAA-A-A-CG
1 GTAAGCT-CTATTGAGC--ATGAACAGTAAGCTCTAACGAGCTAATATATCG
*
79752484 GTAAGCTCTATTGAGC-TGAACAGTAAGCTCTTACGAGCTAATATATCG
1 GTAAGCTCTATTGAGCATGAACAGTAAGCTCTAACGAGCTAATATATCG
79752532 GTAAGCTC
1 GTAAGCTC
79752540 ATACAAGTTG
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
45 23 0.45
46 1 0.02
47 1 0.02
48 19 0.37
49 7 0.14
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (49 bp):
GTAAGCTCTATTGAGCATGAACAGTAAGCTCTAACGAGCTAATATATCG
Found at i:79752512 original size:22 final size:22
Alignment explanation
Indices: 79752433--79752514 Score: 92
Period size: 23 Copynumber: 3.5 Consensus size: 22
79752423 GAGTCATGAT
79752433 CAGTAAGCTCCTATTGAGCTGATGAA
1 CAGTAAGCT-CTATTGAGC---TGAA
* *
79752459 CAGTAAGCTCTAATGAGCTAAAA
1 CAGTAAGCTCTATTGAGCT-GAA
*
79752482 CGGTAAGCTCTATTGAGCTGAA
1 CAGTAAGCTCTATTGAGCTGAA
79752504 CAGTAAGCTCT
1 CAGTAAGCTCT
79752515 TACGAGCTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
22 13 0.27
23 19 0.39
25 8 0.16
26 9 0.18
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (22 bp):
CAGTAAGCTCTATTGAGCTGAA
Found at i:79752521 original size:22 final size:22
Alignment explanation
Indices: 79752455--79752522 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 22
79752445 ATTGAGCTGA
*
79752455 TGAACAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTTATGAGC
* *
79752477 TAAAACGGTAAGCTC-TATTGAGC
1 T-GAACAGTAAGCTCTTA-TGAGC
*
79752500 TGAACAGTAAGCTCTTACGAGC
1 TGAACAGTAAGCTCTTATGAGC
79752522 T
1 T
79752523 AATATATCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 18 0.49
23 19 0.51
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTTATGAGC
Found at i:79755211 original size:18 final size:18
Alignment explanation
Indices: 79755190--79755233 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
79755180 GTCTCTAAAA
79755190 AAAAATT-AAAATATTTAT
1 AAAAATTCAAAA-ATTTAT
*
79755208 AAAAATTCCAAAATTTAT
1 AAAAATTCAAAAATTTAT
79755226 ATAAAATT
1 A-AAAATT
79755234 TTGAAGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAATTCAAAAATTTAT
Found at i:79761464 original size:7 final size:7
Alignment explanation
Indices: 79761452--79761476 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
79761442 GAGACTTTTC
79761452 TTTTCTT
1 TTTTCTT
79761459 TTTTCTT
1 TTTTCTT
79761466 TTTTCTT
1 TTTTCTT
79761473 TTTT
1 TTTT
79761477 AAAGAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:79761631 original size:17 final size:18
Alignment explanation
Indices: 79761609--79761650 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
79761599 ATATAATATC
79761609 TATATTTGAT-AAAAATA
1 TATATTTGATGAAAAATA
* *
79761626 TATATTAGATGAAAATTA
1 TATATTTGATGAAAAATA
79761644 TATATTT
1 TATATTT
79761651 TGACAAATGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (18 bp):
TATATTTGATGAAAAATA
Found at i:79772164 original size:46 final size:45
Alignment explanation
Indices: 79772011--79772180 Score: 171
Period size: 46 Copynumber: 3.7 Consensus size: 45
79772001 TGTGTGAGCT
* * *
79772011 AGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATTACGAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GACGA-AGCC
* * * *
79772057 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACGA-AGCC
* * *
79772105 AGTGTAAGACATGTATGGGACATGCATCAGCCTTGGGACGCAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACG-AAGCC
* *
79772151 AGTGTAAGACATGTTTGGGACATGCGTCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG
79772181 TTACGAGATG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
46 51 0.50
47 28 0.27
48 22 0.21
49 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGAAGCC
Found at i:79777525 original size:39 final size:40
Alignment explanation
Indices: 79777315--79777545 Score: 304
Period size: 40 Copynumber: 5.8 Consensus size: 40
79777305 GGATATAACT
* * * *
79777315 ACTCGCTCAAATGCCTTCGGGACATAGCCCAG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* * *
79777355 ACTCGAACAATTGCCTTCGGGACATAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
79777395 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
79777435 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
79777475 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
79777514 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
79777546 TTTTCATCCA
Statistics
Matches: 173, Mismatches: 17, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 34 0.20
40 137 0.79
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:79781533 original size:19 final size:20
Alignment explanation
Indices: 79781498--79781540 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
79781488 ATTTAAACAT
79781498 TCAATTCACATAAAATT-AA
1 TCAATTCACATAAAATTCAA
*
79781517 TCAATTCATA-AACAATTCAA
1 TCAATTCACATAA-AATTCAA
79781537 TCAA
1 TCAA
79781541 AATTAAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.62
20 6 0.29
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (20 bp):
TCAATTCACATAAAATTCAA
Found at i:79784259 original size:12 final size:12
Alignment explanation
Indices: 79784230--79784259 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
79784220 ATAATGCTCA
79784230 AAATATTAAAAT
1 AAATATTAAAAT
79784242 -AATATTAAAAT
1 AAATATTAAAAT
79784253 AAATATT
1 AAATATT
79784260 TTGACTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:79795689 original size:290 final size:290
Alignment explanation
Indices: 79795114--79796499 Score: 2202
Period size: 290 Copynumber: 4.8 Consensus size: 290
79795104 AAATTCTTTC
* * *
79795114 TTTGATAGAGTAACAATCTCTCAAAGTTGTGTTTTTTTGCCTTTCCGATGCCATCTATTTATAAG
1 TTTGACAGAGTAACAATCTCTCAAAGTTGTG-TTTTATGCCCTTCCGATGCCATCTATTTATAAG
* **
79795179 AAGAGAAGGTAGAACACTTGTTGAGTTGTAGTGGTTTATTTCAAATGGAAAAA-TGACTTCCTAC
65 AAGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAAT-GAAAAACCAACTTCCTAC
* *
79795243 TTAGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTA-GGTTTTCACCCACTTCATG
129 TTAGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATG
* * * *
79795307 TTATATGAGGGGATTTGGTCCTTTCTTACATTGGGTCCAATAGAATTGTTATTTTGGGAAATTAT
194 TTATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTAT
*
79795372 ATTTAATATTTAAGAACAAATTCTCTCTATTT
259 ATTTAATATTTAAGAATAAATTCTCTCTATTT
* *
79795404 TTTGACAGAGTAAAAATCTCAT-AAAGCTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAG
1 TTTGACAGAGTAACAATCTC-TCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAG
* * * *
79795468 AAGGGAAGGTAGCACCCTTGTTGTGTTGTAGTGGTTTATTTCAAATGAAAAACCACCTTCCTACT
65 AAGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTCCTACT
* * * *
79795533 TAGAGTAGGAGTAAGGTTAATAGCACACCCTAGTATTTCTACTATGGTTGTCACCTATTTCATAT
130 TAGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGT
*
79795598 TATATGAGGGGATTTGGGCTTTTTTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATA
195 TATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATA
79795663 TTTAATATTTAAGAATAAATTCTCTCTATTT
260 TTTAATATTTAAGAATAAATTCTCTCTATTT
* * *
79795694 TTTGACAAAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCTGATGCCAACTATTTATAAGA
1 TTTGACAGAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAGA
* *
79795759 AAAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTCTTACTT
66 AGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTCCTACTT
* *
79795824 AGAGTAGGAGAAGGGTTAATAGCACACCCTAGTATTTCTACTATGGTTGTCACCCATTTCATGTT
131 AGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGTT
*
79795889 ATATGAGGGGATTTGGGCTTTTCTTACATCAGGTCCAATAGAATTGTTATTCTGGGAAATTATAT
196 ATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATAT
*
79795954 TTAATATTTAAGAATAAATTCTATCTATTT
261 TTAATATTTAAGAATAAATTCTCTCTATTT
*
79795984 TTTGATAGAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAGA
1 TTTGACAGAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAGA
* * *
79796049 AAAGAAGTTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTTCTACTT
66 AGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTCCTACTT
79796114 AGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGTT
131 AGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGTT
* *
79796179 ATATGATGGGATTTGGGCCTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATAT
196 ATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATAT
79796244 TTAATATTTAAGAATAAATTCTCTCTATTT
261 TTAATATTTAAGAATAAATTCTCTCTATTT
* * * * *
79796274 TTTGACAGAGTAACAATCTCTCAGACTTGTGTTTTA------T--GATGTCTTTTATTTATAAGA
1 TTTGACAGAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAGA
*
79796331 AGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGGAAAAA-CAACTTCCTACC
66 AGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAAT-GAAAAACCAACTTCCTACT
* * * *
79796395 TAGAGTAAGAGTAGGGTTAATAGCACACCGTAGTATTTCTACTAGGGTTGCCACCCACTTCATGT
130 TAGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGT
*
79796460 TATATGAGGGGATTTGGGCTTTTCTTACATTGGGTCCAAT
195 TATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAAT
79796500 TATGAGTATG
Statistics
Matches: 1020, Mismatches: 71, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
282 168 0.16
283 6 0.01
284 1 0.00
288 6 0.01
289 126 0.12
290 712 0.70
291 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (290 bp):
TTTGACAGAGTAACAATCTCTCAAAGTTGTGTTTTATGCCCTTCCGATGCCATCTATTTATAAGA
AGAGAAGGTAGAACCCTTGTTGAGTTGTAGTGGTTTATTTCAAATGAAAAACCAACTTCCTACTT
AGAGTAGGAGTAGGGTTAATAGCACACCCTAGTATTTCTACTAGGGTTGTCACCCATTTCATGTT
ATATGAGGGGATTTGGGCTTTTCTTACATCGGGTCCAATAGAATTGTTATTCTGGGAAATTATAT
TTAATATTTAAGAATAAATTCTCTCTATTT
Found at i:79800732 original size:27 final size:26
Alignment explanation
Indices: 79800690--79800881 Score: 174
Period size: 27 Copynumber: 7.2 Consensus size: 26
79800680 GGTCGTTAAG
* *
79800690 ACCCCAAATCGTAAAATTACTGAAAT
1 ACCCCAATTTGTAAAATTACTGAAAT
* *
79800716 ACCCCAGGTTTGTAAAATTA-TCAAAAT
1 ACCCCA-ATTTGTAAAATTACT-GAAAT
*
79800743 ACCTCCAATTTGTAAAATTACCGAAAT
1 ACC-CCAATTTGTAAAATTACTGAAAT
* *
79800770 AACCCCAGTTTGTAAAATTACCGAAAT
1 -ACCCCAATTTGTAAAATTACTGAAAT
79800797 ACCCCCAATTTGTAAAATTA-TCGAAAT
1 A-CCCCAATTTGTAAAATTACT-GAAAT
* * *
79800824 AGCCCTAATTTTTAAAATTACTAAAAT
1 A-CCCCAATTTGTAAAATTACTGAAAT
* *
79800851 ACCCCTATAGTGTAAAATTA-TCGAAAT
1 ACCCCAAT-TTGTAAAATTACT-GAAAT
79800878 ACCC
1 ACCC
79800882 TTGTAGTGTA
Statistics
Matches: 137, Mismatches: 19, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
26 14 0.10
27 116 0.85
28 7 0.05
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (26 bp):
ACCCCAATTTGTAAAATTACTGAAAT
Found at i:79800834 original size:81 final size:82
Alignment explanation
Indices: 79800700--79800881 Score: 221
Period size: 81 Copynumber: 2.2 Consensus size: 82
79800690 ACCCCAAATC
* *
79800700 GTAAAATTACTGAAATA-CCCCAGGTTTGTAAAATTATCAAAATACCTCCAATTTGTAAAATTAC
1 GTAAAATTACCGAAATACCCCCAGATTTGTAAAATTATCAAAATACCTCCAATTTGTAAAATTAC
* *
79800764 CGAAATAACCCC-AGT-TT
66 CAAAAT-ACCCCTA-TAGT
* * *
79800781 GTAAAATTACCGAAATACCCCCA-ATTTGTAAAATTATCGAAATAGCC-CTAATTTTTAAAATTA
1 GTAAAATTACCGAAATACCCCCAGATTTGTAAAATTATCAAAATA-CCTCCAATTTGTAAAATTA
*
79800844 CTAAAATACCCCTATAGT
65 CCAAAATACCCCTATAGT
*
79800862 GTAAAATTATCGAAATACCC
1 GTAAAATTACCGAAATACCC
79800882 TTGTAGTGTA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
80 6 0.07
81 75 0.85
82 7 0.08
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (82 bp):
GTAAAATTACCGAAATACCCCCAGATTTGTAAAATTATCAAAATACCTCCAATTTGTAAAATTAC
CAAAATACCCCTATAGT
Found at i:79800888 original size:27 final size:27
Alignment explanation
Indices: 79800726--79800910 Score: 130
Period size: 27 Copynumber: 6.9 Consensus size: 27
79800716 ACCCCAGGTT
* * *
79800726 TGTAAAATTATCAAAATACCTCCAAT-T
1 TGTAAAATTATCGAAATACC-CCTATAG
* *
79800753 TGTAAAATTACCGAAATAACCCC-AGT-T
1 TGTAAAATTATCGAAAT-ACCCCTA-TAG
* * *
79800780 TGTAAAATTACCGAAATACCCCCA-ATT
1 TGTAAAATTATCGAAATACCCCTATA-G
* *
79800807 TGTAAAATTATCGAAATAGCCCTA-ATT
1 TGTAAAATTATCGAAATACCCCTATA-G
* *
79800834 TTTAAAATTA-CTAAAATACCCCTATAG
1 TGTAAAATTATC-GAAATACCCCTATAG
* *
79800861 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCCTATAG
* *
79800888 TGTAAAATTATTGAAATTCCCCT
1 TGTAAAATTATCGAAATACCCCT
79800911 GTAGGGCAAA
Statistics
Matches: 134, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
26 7 0.05
27 122 0.91
28 5 0.04
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCCTATAG
Found at i:79800894 original size:54 final size:53
Alignment explanation
Indices: 79800690--79800897 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 53
79800680 GGTCGTTAAG
* *
79800690 ACCCCAA-ATCGTAAAATTA-CTGAAATACCCCAGGTTTGTAAAATTA-TCAAAAT
1 ACCCCAATATTGTAAAATTATC-GAAATACCCTA-GTTTGTAAAATTACT-AAAAT
* * **
79800743 ACCTCCAAT-TTGTAAAATTACCGAAATAACCCCAGTTTGTAAAATTACCGAAAT
1 ACC-CCAATATTGTAAAATTATCGAAAT-ACCCTAGTTTGTAAAATTACTAAAAT
* *
79800797 ACCCCCAAT-TTGTAAAATTATCGAAATAGCCCTAATTTTTAAAATTACTAAAAT
1 A-CCCCAATATTGTAAAATTATCGAAATA-CCCTAGTTTGTAAAATTACTAAAAT
* * * *
79800851 ACCCCTATAGTGTAAAATTATCGAAATACCCTTGTAGTGTAAAATTA
1 ACCCCAATATTGTAAAATTATCGAAATACCCTAGT-TTGTAAAATTA
79800898 TTGAAATTCC
Statistics
Matches: 131, Mismatches: 15, Indels: 17
0.80 0.09 0.10
Matches are distributed among these distances:
53 15 0.11
54 107 0.82
55 9 0.07
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
ACCCCAATATTGTAAAATTATCGAAATACCCTAGTTTGTAAAATTACTAAAAT
Found at i:79800922 original size:54 final size:54
Alignment explanation
Indices: 79800810--79800922 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
79800800 CCCAATTTGT
* * * *
79800810 AAAATTATCGAAATAGCCCTAATTTTTAAAATTACTAAAATACCCCTATAGTGT
1 AAAATTATCGAAATAGCCCTAATGTGTAAAATTACTAAAATACCCCTATAGGGC
** * * * *
79800864 AAAATTATCGAAATA-CCCTTGTAGTGTAAAATTATTGAAATTCCCCTGTAGGGC
1 AAAATTATCGAAATAGCCCTAAT-GTGTAAAATTACTAAAATACCCCTATAGGGC
79800918 AAAAT
1 AAAAT
79800923 GACTATTTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 5 0.10
54 43 0.90
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.32
Consensus pattern (54 bp):
AAAATTATCGAAATAGCCCTAATGTGTAAAATTACTAAAATACCCCTATAGGGC
Found at i:79801379 original size:25 final size:27
Alignment explanation
Indices: 79801333--79801384 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
79801323 TTGATGACTC
* *
79801333 TGTGTCGATCATATTTACCCATGGCTG
1 TGTGCCGATCATATTTACCCATCGCTG
*
79801360 TGTGCCGATTATA-TTA-CCATCGCTG
1 TGTGCCGATCATATTTACCCATCGCTG
79801385 ATGGCTATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 8 0.36
26 3 0.14
27 11 0.50
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TGTGCCGATCATATTTACCCATCGCTG
Found at i:79801634 original size:8 final size:8
Alignment explanation
Indices: 79801621--79801658 Score: 76
Period size: 8 Copynumber: 4.8 Consensus size: 8
79801611 CTAGATCGGC
79801621 AAAAGCCG
1 AAAAGCCG
79801629 AAAAGCCG
1 AAAAGCCG
79801637 AAAAGCCG
1 AAAAGCCG
79801645 AAAAGCCG
1 AAAAGCCG
79801653 AAAAGC
1 AAAAGC
79801659 TGGCATTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.53, C:0.24, G:0.24, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:79802220 original size:22 final size:22
Alignment explanation
Indices: 79802192--79802233 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
79802182 ATTCCCCATA
*
79802192 GGAAGTGTAGGGATGGACAGAG
1 GGAAGTGCAGGGATGGACAGAG
*
79802214 GGAAGTGCAGGGTTGGACAG
1 GGAAGTGCAGGGATGGACAG
79802234 GGTTATCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.07, G:0.50, T:0.14
Consensus pattern (22 bp):
GGAAGTGCAGGGATGGACAGAG
Found at i:79803118 original size:16 final size:17
Alignment explanation
Indices: 79803084--79803118 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
79803074 TACATCAGGA
79803084 AGGGTTTTCAATGAAAAC
1 AGGGTTTTCAA-GAAAAC
79803102 AGGGTTTTCAA-AAAAC
1 AGGGTTTTCAAGAAAAC
79803118 A
1 A
79803119 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
18 11 0.65
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.26
Consensus pattern (17 bp):
AGGGTTTTCAAGAAAAC
Found at i:79809995 original size:27 final size:26
Alignment explanation
Indices: 79809956--79810119 Score: 193
Period size: 27 Copynumber: 6.0 Consensus size: 26
79809946 AAGCGTCCTC
*
79809956 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
* *
79809983 ATGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
*
79810010 GTGGCTATGCCACGATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
79810037 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
79810064 GTGGCTCTGCCACAATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTG
** *
79810092 GTTACTCTGTCACATTATCTGTATCTG
1 GTGGCTCTGCCACATTATCTG-ATCTG
79810119 G
1 G
79810120 CAGCCATGCT
Statistics
Matches: 120, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
26 4 0.03
27 98 0.82
28 18 0.15
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:79810042 original size:54 final size:54
Alignment explanation
Indices: 79809956--79810119 Score: 249
Period size: 54 Copynumber: 3.0 Consensus size: 54
79809946 AAGCGTCCTC
*
79809956 GTGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
*
79810010 GTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
* ** *
79810064 GTGGCTCTGCCACAATTATCTGTATCTGGTTACTCTGTCACAT-TATCTGTATCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-TCTG
79810119 G
1 G
79810120 CAGCCATGCT
Statistics
Matches: 101, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 79 0.78
55 22 0.22
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTG
Found at i:79817033 original size:39 final size:40
Alignment explanation
Indices: 79816900--79817050 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
79816890 GGATATAGCT
* * * * * *
79816900 ACTCGCTCAAATGCTTTCGGGACATAGCCTGGTTA-GAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AACTAGTA
* **
79816940 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
*
79816980 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
* *
79817019 AC-CAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTC-GCACAAATGCCTTCGGGACTTAGCCCGG
79817051 TTATCATCCA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 32 0.34
40 61 0.65
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTA
Found at i:79821316 original size:27 final size:26
Alignment explanation
Indices: 79821276--79821442 Score: 208
Period size: 27 Copynumber: 6.2 Consensus size: 26
79821266 AGGAAGTGTC
*
79821276 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
79821303 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
79821330 CTGGTGGCTGTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
79821357 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
79821384 CTGGTGGCTCTGCCACAATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
79821412 CTGGTGACTCTGTCACATTATTTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
79821439 CTGG
1 CTGG
79821443 CAGCCATGCT
Statistics
Matches: 125, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.03
27 102 0.82
28 19 0.15
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:79821358 original size:54 final size:54
Alignment explanation
Indices: 79821276--79821442 Score: 255
Period size: 54 Copynumber: 3.1 Consensus size: 54
79821266 AGGAAGTGTC
79821276 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
79821330 CTGGTGGCTGTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * *
79821384 CTGGTGGCTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATTTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-T
79821439 CTGG
1 CTGG
79821443 CAGCCATGCT
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
54 81 0.78
55 23 0.22
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:79826480 original size:48 final size:48
Alignment explanation
Indices: 79826418--79827127 Score: 1255
Period size: 48 Copynumber: 14.9 Consensus size: 48
79826408 TATATATGTG
* *
79826418 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
79826466 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826514 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
79826562 TGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGTGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
79826610 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATATATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826658 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826706 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATAT-TATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
79826753 TGTGGT-AAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826800 TGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826847 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826895 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
79826943 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79826991 TGTGGTAAAGCTGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79827039 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
79827087 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
79827128 GTGTGTATAT
Statistics
Matches: 634, Mismatches: 25, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 35 0.06
47 67 0.11
48 532 0.84
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.32
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:79827328 original size:37 final size:36
Alignment explanation
Indices: 79827268--79827368 Score: 159
Period size: 36 Copynumber: 2.8 Consensus size: 36
79827258 GGAAATATAT
79827268 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
*
79827304 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
* *
79827340 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
79827369 GGACTATTCG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 39 0.64
37 22 0.36
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:79828694 original size:40 final size:40
Alignment explanation
Indices: 79828641--79828867 Score: 382
Period size: 40 Copynumber: 5.7 Consensus size: 40
79828631 TTGAGAGTTA
*
79828641 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * **
79828681 TATGTCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
79828721 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
79828761 TATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
79828801 TATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
79828841 TATATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCCCGAAGAGCA
79828868 ATCATGCTAG
Statistics
Matches: 173, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:79829093 original size:25 final size:25
Alignment explanation
Indices: 79829043--79829093 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
79829033 TGTGTAACAA
* *
79829043 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
79829068 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
79829093 C
1 C
79829094 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:79832244 original size:48 final size:48
Alignment explanation
Indices: 79832182--79832747 Score: 1012
Period size: 48 Copynumber: 11.9 Consensus size: 48
79832172 TATATATGTG
*
79832182 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
79832230 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
79832278 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
79832326 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
79832374 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
79832422 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
79832470 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
79832518 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
79832566 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATAT-TATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
79832613 TGTGGT-AAGCCGAATGGCTAGTGTG-AATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
79832659 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
79832707 TGTGGTAAGGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
79832748 GTGTGTATAT
Statistics
Matches: 503, Mismatches: 12, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
45 15 0.03
46 29 0.06
47 29 0.06
48 430 0.85
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:79832937 original size:37 final size:37
Alignment explanation
Indices: 79832887--79832982 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
79832877 GGAAATATAT
79832887 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79832924 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79832961 TCCGGGTAAGACCCGATAACTA
1 TCCGGGTAAGACCCGATGACTA
79832983 TGTGGGGACT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:79850167 original size:19 final size:19
Alignment explanation
Indices: 79850143--79850183 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
79850133 TGTCTAAAAT
79850143 TTTACCCATGTTAAATATG
1 TTTACCCATGTTAAATATG
79850162 TTTACCCATGTTAAATATG
1 TTTACCCATGTTAAATATG
79850181 TTT
1 TTT
79850184 GTATTTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (19 bp):
TTTACCCATGTTAAATATG
Found at i:79854497 original size:50 final size:50
Alignment explanation
Indices: 79854368--79854601 Score: 276
Period size: 50 Copynumber: 4.7 Consensus size: 50
79854358 ATCTATTGTG
* * * **
79854368 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA--TGCATGCCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAT--CAGAT-GGTT
* * *
79854419 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
*
79854469 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* * * * **
79854519 AGTTGACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
*
79854569 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
79854602 TGCGTACCAG
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 30 0.19
50 93 0.58
51 34 0.21
53 4 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:79857351 original size:15 final size:16
Alignment explanation
Indices: 79857333--79857366 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
79857323 TCTCGTATCA
79857333 TGGATTTCTTTATT-T
1 TGGATTTCTTTATTCT
79857348 TGGATTTCTTTATTCT
1 TGGATTTCTTTATTCT
79857364 TGG
1 TGG
79857367 CTTCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.12, C:0.09, G:0.18, T:0.62
Consensus pattern (16 bp):
TGGATTTCTTTATTCT
Found at i:79860327 original size:49 final size:50
Alignment explanation
Indices: 79860136--79860332 Score: 227
Period size: 50 Copynumber: 3.9 Consensus size: 50
79860126 ATCTATTGTG
* * * *
79860136 AGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * *
79860187 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACT-GTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGA-TAATT
* * *
79860237 AGGTCACATGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
79860287 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
79860333 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 42 0.34
50 43 0.35
51 36 0.30
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:79860550 original size:16 final size:19
Alignment explanation
Indices: 79860529--79860585 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
79860519 CAAAATGGAT
79860529 AAAGTGAA-ATTA-T-GTA
1 AAAGTGAATATTAGTAGTA
*
79860545 AAAGTGAATTTTAGTAGTA
1 AAAGTGAATATTAGTAGTA
*
79860564 AAAGTGAATTTTAGTAGTA
1 AAAGTGAATATTAGTAGTA
79860583 AAA
1 AAA
79860586 CAGTGTTGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
16 8 0.22
17 3 0.08
18 1 0.03
19 25 0.68
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.33
Consensus pattern (19 bp):
AAAGTGAATATTAGTAGTA
Found at i:79860566 original size:19 final size:19
Alignment explanation
Indices: 79860542--79860585 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
79860532 GTGAAATTAT
79860542 GTAAAAGTGAATTTTAGTA
1 GTAAAAGTGAATTTTAGTA
79860561 GTAAAAGTGAATTTTAGTA
1 GTAAAAGTGAATTTTAGTA
79860580 GTAAAA
1 GTAAAA
79860586 CAGTGTTGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.34
Consensus pattern (19 bp):
GTAAAAGTGAATTTTAGTA
Found at i:79866562 original size:20 final size:20
Alignment explanation
Indices: 79866525--79866576 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
79866515 TATTTTGTCC
* ** *
79866525 ACACGGGCATGTGTCAAATG
1 ACACGGGCGTGTCCCAAACG
79866545 ACACGGGCGTGTCCCAAACG
1 ACACGGGCGTGTCCCAAACG
*
79866565 GCACGGGCGTGT
1 ACACGGGCGTGT
79866577 GACTCCTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.15
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAACG
Found at i:79866628 original size:20 final size:20
Alignment explanation
Indices: 79866591--79866628 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
79866581 CCTGTACATA
*
79866591 GTAAAAATTTTCTAAGTTTT
1 GTAAAAATTCTCTAAGTTTT
*
79866611 GTAAAAATTCTCTTAGTT
1 GTAAAAATTCTCTAAGTT
79866629 ATCGGTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (20 bp):
GTAAAAATTCTCTAAGTTTT
Found at i:79875643 original size:47 final size:47
Alignment explanation
Indices: 79875585--79875703 Score: 195
Period size: 47 Copynumber: 2.5 Consensus size: 47
79875575 GCATTGGCAC
*
79875585 TAAGAGAAGGATACCATGTAAG-CCTATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACC-ATGTTTGGAACATGGCATTTGG
79875632 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
79875679 TAAGATAAGGATATCATGTAAGACC
1 TAAGACAAGGATACCATGTAAGACC
79875704 GTGCCAAAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 66 0.97
48 2 0.03
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:79875867 original size:53 final size:53
Alignment explanation
Indices: 79875685--79876162 Score: 537
Period size: 53 Copynumber: 8.9 Consensus size: 53
79875675 TTGGTAAGAT
* * * * *
79875685 AAGGATATCATGTAAGACCGTGCCAAAGCATGGTATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
* ** * * *
79875739 AAGGAAATCATGTAAGACCATGTTAAGGCATGGCATTGATAAGTTACTATAAGAC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC
* **
79875794 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
* * * *
79875847 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGG-C
** *
79875903 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
79875955 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
* * ** * *
79876008 AAGGATATCATGTAAGACCATGTCAAGACATAACATTGATGAGTTACTATAATGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC
**
79876063 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
* * * * * * *
79876116 AAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTTCA
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
79876163 AAAAAGAAAA
Statistics
Matches: 361, Mismatches: 54, Indels: 19
0.83 0.12 0.04
Matches are distributed among these distances:
52 8 0.02
53 177 0.49
54 44 0.12
55 124 0.34
56 8 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (53 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
Found at i:79875879 original size:108 final size:106
Alignment explanation
Indices: 79875679--79876162 Score: 531
Period size: 108 Copynumber: 4.5 Consensus size: 106
79875669 TGGCATTTGG
* * * * * * *
79875679 TAAGATAAGGATATCATGTAAGACCGTGCCAAAGCATGGTATTGATAAGTTCTATAAGGCAAGGA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTC-ATAAGGCAAGGA
* ** *
79875744 AATCATGTAAGACCATGTTAAGGCATGGCATTGATAAGTTACTA
65 TATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-C-A
* *
79875788 TAAGACAAAGATCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGAT
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGCAAGGAT
* *
79875853 ATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
66 ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-C-A
* *
79875896 TAAGGA-AAAGGTCCCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGCAAGGA
1 TAA-GACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGCAAGGA
*
79875960 TATCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
65 TATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCA
* * * * * *** * *
79876002 TAAGGCAAGGATATCATGTAAGACCATGTCAAGACATAACATTGATGAGTTACTATAATGCAAAG
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTT-C-ATAAGGC-AAG
** *
79876067 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
63 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCA
* * * * * * *
79876110 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGTAATGGTAAGTTCA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCA
79876163 AAAAAGAAAA
Statistics
Matches: 330, Mismatches: 40, Indels: 13
0.86 0.10 0.03
Matches are distributed among these distances:
105 1 0.00
106 40 0.12
107 3 0.01
108 237 0.72
109 49 0.15
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (106 bp):
TAAGACAAAGATACCATGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGCAAGGAT
ATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCA
Found at i:79875993 original size:161 final size:160
Alignment explanation
Indices: 79875685--79876162 Score: 654
Period size: 161 Copynumber: 3.0 Consensus size: 160
79875675 TTGGTAAGAT
* * * * * ***
79875685 AAGGATATCATGTAAGACCGTGCCAA-AGCATGGTATTGATAAGTT-CTATAAGGCAAGGAAATC
1 AAGGATATCATGTAAGACCATGTCAAGA-CATGGCATTGATGAGTTACTATAAGGAAAGG-TCCC
** * * * * *
79875748 ATGTAAGACCATGTTAAGGCATGGCATTGATAAGTTACTATAAGACAAAGATCCCATGTAAGACC
64 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGCAAGGATACCATGTAAGACC
79875813 ATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
127 ATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
79875847 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCA
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTCCCA
* *
79875912 TGTAAGACCATGCCAAGGCATGGTATTGGTGAGTTCATAAGGCAAGGATATCATGTAAGACCATG
65 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATG
79875977 CCAAGGCATGGCATTGGTGAGTTCATAAGGC
130 CCAAGGCATGGCATTGGTGAGTTCATAAGGC
** *
79876008 AAGGATATCATGTAAGACCATGTCAAGACATAACATTGATGAGTTACTATAATGCAAAGGTCCCA
1 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAA-GGAAAGGTCCCA
*
79876073 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCATG
65 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATG
* * * * *
79876138 TCAAGACATGGTAATGGTAAGTTCA
130 CCAAGGCATGGCATTGGTGAGTTCA
79876163 AAAAAGAAAA
Statistics
Matches: 284, Mismatches: 28, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
161 198 0.70
162 41 0.14
163 41 0.14
164 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (160 bp):
AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAGGTCCCAT
GTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATGC
CAAGGCATGGCATTGGTGAGTTCATAAGGC
Found at i:79877865 original size:48 final size:48
Alignment explanation
Indices: 79877808--79878038 Score: 258
Period size: 48 Copynumber: 4.9 Consensus size: 48
79877798 CACATGGTAG
* * * *
79877808 GATGCCAATGCCATATCTCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* ** *
79877856 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
79877904 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * * * ** *
79877952 AATGTCGAT---A-G-CCCA-ACTATGATCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
79877995 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
79878039 CATAACCCTA
Statistics
Matches: 148, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
42 2 0.01
43 30 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 110 0.74
49 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:79886547 original size:5 final size:5
Alignment explanation
Indices: 79886537--79886562 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79886527 ATTACTATAT
79886537 TATTA TATTA TATTA TATTA TATTA T
1 TATTA TATTA TATTA TATTA TATTA T
79886563 TATAACTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATTA
Found at i:79886547 original size:8 final size:8
Alignment explanation
Indices: 79886525--79886566 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
79886515 GTATATATAA
*
79886525 ATATTACT
1 ATATTATT
79886533 ATATTATT
1 ATATTATT
79886541 ATATTA-T
1 ATATTATT
79886548 AT-TATATT
1 ATAT-TATT
79886556 ATATTATT
1 ATATTATT
79886564 ATA
1 ATA
79886567 ACTAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
6 1 0.03
7 5 0.17
8 23 0.77
9 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (8 bp):
ATATTATT
Found at i:79886591 original size:11 final size:11
Alignment explanation
Indices: 79886570--79886604 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
79886560 TATTATAACT
79886570 AAAAA-AATAA
1 AAAAAGAATAA
*
79886580 ATAAAGAATAA
1 AAAAAGAATAA
79886591 AAAAAGAATAA
1 AAAAAGAATAA
79886602 AAA
1 AAA
79886605 GAATAGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (11 bp):
AAAAAGAATAA
Found at i:79886605 original size:20 final size:19
Alignment explanation
Indices: 79886569--79886609 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
79886559 TTATTATAAC
* *
79886569 TAAAAAAATAAATAAAGAA
1 TAAAAAAAGAAAAAAAGAA
79886588 TAAAAAAAGAATAAAAAGAA
1 TAAAAAAAGAA-AAAAAGAA
79886608 TA
1 TA
79886610 GGATAGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (19 bp):
TAAAAAAAGAAAAAAAGAA
Found at i:79886657 original size:18 final size:19
Alignment explanation
Indices: 79886624--79886659 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
79886614 AGAAAACAAA
*
79886624 AAAGAGAAAGAGAAAGGAG
1 AAAGAGAAAGAAAAAGGAG
79886643 AAAGA-AAAGAAAAAGGA
1 AAAGAGAAAGAAAAAGGA
79886660 AAAACTAGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
AAAGAGAAAGAAAAAGGAG
Found at i:79887860 original size:19 final size:19
Alignment explanation
Indices: 79887836--79887874 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
79887826 ATCGGAAGTG
79887836 AATGTGTTATAAATGATTT
1 AATGTGTTATAAATGATTT
79887855 AATGTGTTATAAATGATTT
1 AATGTGTTATAAATGATTT
79887874 A
1 A
79887875 GCTATGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (19 bp):
AATGTGTTATAAATGATTT
Found at i:79899416 original size:37 final size:37
Alignment explanation
Indices: 79899362--79899437 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
79899352 AGTAGTCACG
79899362 ATAGTAATATGGAGTATAATAAAATTGGAAAATACTC
1 ATAGTAATATGGAGTATAATAAAATTGGAAAATACTC
*
79899399 ATAGTAATATGGCGTATAATAAAATTGGAAAATACTC
1 ATAGTAATATGGAGTATAATAAAATTGGAAAATACTC
79899436 AT
1 AT
79899438 CTTGGTTACC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (37 bp):
ATAGTAATATGGAGTATAATAAAATTGGAAAATACTC
Found at i:79901918 original size:39 final size:39
Alignment explanation
Indices: 79901877--79902091 Score: 283
Period size: 39 Copynumber: 5.5 Consensus size: 39
79901867 ATTCACTTTT
* * *
79901877 AAGCATATATCACATTGCACATATAATCACATAACATTT
1 AAGCATATATCACATTACTCATATAATCACATAACATTC
* * **
79901916 AAGCATATATCACAATACTCATATAATAACATAATGTTC
1 AAGCATATATCACATTACTCATATAATCACATAACATTC
79901955 AAGCATATATCAC-TATACTCATATAATCACATAACATTC
1 AAGCATATATCACAT-TACTCATATAATCACATAACATTC
79901994 AAGCATATATCACAATT-CTCATATAATCACATAACATTC
1 AAGCATATATCAC-ATTACTCATATAATCACATAACATTC
* * *
79902033 AAGC-TATATCAAAATACTCATATAATCACATAACATTT
1 AAGCATATATCACATTACTCATATAATCACATAACATTC
* *
79902071 AAGCATATACCACAATACTCA
1 AAGCATATATCACATTACTCA
79902092 AAAACATGTT
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
37 2 0.01
38 32 0.21
39 119 0.77
40 1 0.01
41 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACATTACTCATATAATCACATAACATTC
Found at i:79902006 original size:78 final size:77
Alignment explanation
Indices: 79901877--79902091 Score: 315
Period size: 78 Copynumber: 2.8 Consensus size: 77
79901867 ATTCACTTTT
* *
79901877 AAGCATATATCACATTGCACATATAATCACATAACATTTAAGCATATATCACAATACTCATATAA
1 AAGCATATATCACA-TACTCATATAATCACATAACATTTAAGCATATATCACAATACTCATATAA
**
79901942 TAACATAATGTTC
65 TAACATAACATTC
* *
79901955 AAGCATATATCACTATACTCATATAATCACATAACATTCAAGCATATATCACAATTCTCATATAA
1 AAGCATATATCAC-ATACTCATATAATCACATAACATTTAAGCATATATCACAATACTCATATAA
*
79902020 TCACATAACATTC
65 TAACATAACATTC
* *
79902033 AAGC-TATATCAAAATACTCATATAATCACATAACATTTAAGCATATACCACAATACTCA
1 AAGCATATATC-ACATACTCATATAATCACATAACATTTAAGCATATATCACAATACTCA
79902092 AAAACATGTT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
77 49 0.40
78 74 0.60
79 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (77 bp):
AAGCATATATCACATACTCATATAATCACATAACATTTAAGCATATATCACAATACTCATATAAT
AACATAACATTC
Found at i:79908341 original size:10 final size:11
Alignment explanation
Indices: 79908304--79908340 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
79908294 ATTTTGTCCC
79908304 TTTTTGGCTCA
1 TTTTTGGCTCA
79908315 TTTTTGGCTCA
1 TTTTTGGCTCA
*
79908326 TTTTTGGCTCC
1 TTTTTGGCTCA
79908337 TTTT
1 TTTT
79908341 GACTCTTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.05, C:0.19, G:0.16, T:0.59
Consensus pattern (11 bp):
TTTTTGGCTCA
Found at i:79919527 original size:15 final size:15
Alignment explanation
Indices: 79919507--79919548 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
79919497 TTTTTAGTTT
79919507 AATTTTTCTTTTCTA
1 AATTTTTCTTTTCTA
79919522 AATTTTTCTTTTCTA
1 AATTTTTCTTTTCTA
79919537 AATTTTTCTTTT
1 AATTTTTCTTTT
79919549 TAATTGCTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (15 bp):
AATTTTTCTTTTCTA
Found at i:79920710 original size:82 final size:82
Alignment explanation
Indices: 79920568--79920737 Score: 286
Period size: 82 Copynumber: 2.1 Consensus size: 82
79920558 GCAGTGTGAT
* * * * *
79920568 ACAAATGGAGGAGGGATAAATAATCCAGAATGCCTAGCCTATGACCATAGTACTATGAACAAACA
1 ACAATTGGAGGAAGGATAAATAATCCAGAATGCCTACCCTACGACCATAGTACTACGAACAAACA
*
79920633 TGTCAACTATATGGGTA
66 TGCCAACTATATGGGTA
79920650 ACAATTGGAGGAAGGATAAATAATCCAGAATGCCTACCCTACGACCATAGTACTACGAACAAACA
1 ACAATTGGAGGAAGGATAAATAATCCAGAATGCCTACCCTACGACCATAGTACTACGAACAAACA
79920715 TGCCAACTATATGGGTA
66 TGCCAACTATATGGGTA
79920732 ACAATT
1 ACAATT
79920738 CTAGACCAGA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (82 bp):
ACAATTGGAGGAAGGATAAATAATCCAGAATGCCTACCCTACGACCATAGTACTACGAACAAACA
TGCCAACTATATGGGTA
Found at i:79924275 original size:6 final size:6
Alignment explanation
Indices: 79924240--79924296 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
79924230 TTTGAGTCCA
*** *
79924240 TTTATTT TTTATCT TTTATT TTTCGC TTTATT TTTATT TTTA-T TTTATG
1 TTTA-TT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
79924289 TTTATT TT
1 TTTATT TT
79924297 AAAGACTTGT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
5 5 0.12
6 25 0.62
7 10 0.25
ACGTcount: A:0.14, C:0.05, G:0.04, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:79930188 original size:45 final size:45
Alignment explanation
Indices: 79930130--79930306 Score: 137
Period size: 45 Copynumber: 3.9 Consensus size: 45
79930120 ACTATACCAG
* * * *
79930130 AAACAAGTAAGACCATAGTTGAAAGATGTTGTGGCATCACG-ATGC
1 AAACAAATAAGACCATAGTTGAAAGAAGATATGGCATCACGAAT-C
* * * * *
79930175 TATCGAATGAGACCATAGCTGAAAGAAGATATGGCATCACGAATC
1 AAACAAATAAGACCATAGTTGAAAGAAGATATGGCATCACGAATC
* * * *
79930220 AAACAAATAAGACCATAGTTGAAAGACA-CTATGGTAACACG-ATGG
1 AAACAAATAAGACCATAGTTGAAAGA-AGATATGGCATCACGAAT-C
** * *
79930265 AAATGAATAAGACCATAGTTGAAA-AACATTATGGCAACACGA
1 AAACAAATAAGACCATAGTTGAAAGAAGA-TATGGCATCACGA
79930307 CGTAAAATGA
Statistics
Matches: 104, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 97 0.93
46 3 0.03
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.20
Consensus pattern (45 bp):
AAACAAATAAGACCATAGTTGAAAGAAGATATGGCATCACGAATC
Found at i:79930261 original size:90 final size:91
Alignment explanation
Indices: 79930130--79930346 Score: 215
Period size: 90 Copynumber: 2.4 Consensus size: 91
79930120 ACTATACCAG
* *** * * ** *
79930130 AAACAAGTAAGACCATAGTTGAAAGATGTTGTGGCATCACGAT-GCTATCGAATGAGACCATAGC
1 AAACAAATAAGACCATAGTTGAAAGACACTATGGCAACACGATGGAAAT-GAATAAGACCATAGC
* * *
79930194 TGAAAGAAGA-TATGGCATCACGA-ATC
65 TGAAA-AACATTATGGCAACACGACATA
* *
79930220 AAACAAATAAGACCATAGTTGAAAGACACTATGGTAACACGATGGAAATGAATAAGACCATAGTT
1 AAACAAATAAGACCATAGTTGAAAGACACTATGGCAACACGATGGAAATGAATAAGACCATAGCT
*
79930285 GAAAAACATTATGGCAACACGACGTA
66 GAAAAACATTATGGCAACACGACATA
** * * *
79930311 AAATGAATAAGACTATGGTTAAAAGACACTATGGCA
1 AAACAAATAAGACCATAGTTGAAAGACACTATGGCA
79930347 TCAAATTGAG
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
89 3 0.03
90 66 0.64
91 34 0.33
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (91 bp):
AAACAAATAAGACCATAGTTGAAAGACACTATGGCAACACGATGGAAATGAATAAGACCATAGCT
GAAAAACATTATGGCAACACGACATA
Found at i:79930344 original size:46 final size:45
Alignment explanation
Indices: 79930225--79930346 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
79930215 GAATCAAACA
* * * *
79930225 AATAAGACCATAGTTGAAAGACACTATGGTAACACGATGGAAATG
1 AATAAGACCATAGTTAAAAGACACTATGGCAACACGACGAAAATG
*
79930270 AATAAGACCATAGTTGAAAA-ACATTATGGCAACACGACGTAAAATG
1 AATAAGACCATAGTT-AAAAGACACTATGGCAACACGACG-AAAATG
* *
79930316 AATAAGACTATGGTTAAAAGACACTATGGCA
1 AATAAGACCATAGTTAAAAGACACTATGGCA
79930347 TCAAATTGAG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
45 35 0.53
46 31 0.47
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (45 bp):
AATAAGACCATAGTTAAAAGACACTATGGCAACACGACGAAAATG
Found at i:79930362 original size:46 final size:45
Alignment explanation
Indices: 79930225--79930439 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 45
79930215 GAATCAAACA
* * * * *
79930225 AATAAGACCATAGTTGAAAGACACTATGGTAACACGAT-GGAAATG
1 AATAAGACCATGGTTGAAAGACACTATGGCATCA-AATCGGCAATG
* * * * * **
79930270 AATAAGACCATAGTTGAAAAACATTATGGCAACACGA-CGTAAAATG
1 AATAAGACCATGGTTGAAAGACACTATGGCATCA-AATCG-GCAATG
* * * *
79930316 AATAAGACTATGGTTAAAAGACACTATGGCATCAAATTGAGGAATG
1 AATAAGACCATGGTTGAAAGACACTATGGCATCAAATCG-GCAATG
* ** * *
79930362 AATAAAACCATGGTTGAAAGACACTATCACATCAAGTCGGCTATG
1 AATAAGACCATGGTTGAAAGACACTATGGCATCAAATCGGCAATG
* *
79930407 ATTAAGACCATGGTTGAAAGACACCATGGCATC
1 AATAAGACCATGGTTGAAAGACACTATGGCATC
79930440 CTTCAACCAT
Statistics
Matches: 138, Mismatches: 29, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
45 68 0.49
46 70 0.51
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.21
Consensus pattern (45 bp):
AATAAGACCATGGTTGAAAGACACTATGGCATCAAATCGGCAATG
Found at i:79932937 original size:12 final size:12
Alignment explanation
Indices: 79932920--79932944 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79932910 AGTTGCATTC
79932920 AAAAAATTAAAA
1 AAAAAATTAAAA
79932932 AAAAAATTAAAA
1 AAAAAATTAAAA
79932944 A
1 A
79932945 CTAAGATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAAATTAAAA
Found at i:79937456 original size:24 final size:24
Alignment explanation
Indices: 79937177--79937454 Score: 330
Period size: 24 Copynumber: 11.5 Consensus size: 24
79937167 TCAACACAGT
*
79937177 CTGCGTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
79937201 CTGCGTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
* * *
79937225 CTGCGTTTGGTGCCGCCACCAGTACCC
1 CTGCCTTTGGT---GCCACAAGCACCC
* *
79937252 CTGCCTTTGGTGCCACTAGTACCC
1 CTGCCTTTGGTGCCACAAGCACCC
*
79937276 CTGCCTTCGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
79937300 CTG-CTTTCGGTGCCACAAGCACCC
1 CTGCCTTT-GGTGCCACAAGCACCC
79937324 CTG-CTTTCGGTGCCACAAGCACCC
1 CTGCCTTT-GGTGCCACAAGCACCC
*
79937348 CTGCTTTTGGTGCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
79937372 CTG-CTTTCGGTGCCACAAGCACCC
1 CTGCCTTT-GGTGCCACAAGCACCC
** * *
79937396 CTG-CTTTCGGTGCCACTGGTAGCC
1 CTGCCTTT-GGTGCCACAAGCACCC
* *
79937420 CAGCCTTTGGTTCCACAAGCACCC
1 CTGCCTTTGGTGCCACAAGCACCC
79937444 CTGCCTTTGGT
1 CTGCCTTTGGT
79937455 TCAACTGGAA
Statistics
Matches: 226, Mismatches: 21, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
23 6 0.03
24 192 0.85
25 7 0.03
27 21 0.09
ACGTcount: A:0.15, C:0.39, G:0.23, T:0.23
Consensus pattern (24 bp):
CTGCCTTTGGTGCCACAAGCACCC
Found at i:79937542 original size:24 final size:24
Alignment explanation
Indices: 79937509--79937570 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
79937499 GTCTAATGCC
* *
79937509 CCAGCATTTGGAGCTTCAAGCACA
1 CCAGCTTTTGGAGCATCAAGCACA
* * *
79937533 CCTGCTTTTGGCA-CATCTAGCACT
1 CCAGCTTTTGG-AGCATCAAGCACA
79937557 CCAGCTTTTGGAGC
1 CCAGCTTTTGGAGC
79937571 GTCTTCTACT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
23 1 0.03
24 28 0.93
25 1 0.03
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (24 bp):
CCAGCTTTTGGAGCATCAAGCACA
Found at i:79948094 original size:44 final size:44
Alignment explanation
Indices: 79948046--79948133 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
79948036 AGTAACAGTT
79948046 ACAGTACGACACACAT-GATGCCTCATCGACTCGAA-GTCGAAGTA
1 ACAGTACGACACACATAG-TGCCTCATCGACTC-AAGGTCGAAGTA
**
79948090 ACAGTACGACACTTATAGTGCCTCATCGACTCAAGGTCGAAGTA
1 ACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTA
79948134 TCCCTAAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.05
44 37 0.93
45 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.20
Consensus pattern (44 bp):
ACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGAAGTA
Found at i:79949170 original size:17 final size:16
Alignment explanation
Indices: 79949150--79949205 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 16
79949140 TGTCTTTATT
*
79949150 TAATTTATTTCTTAATA
1 TAATTTATTT-ATAATA
79949167 TAA--TATTTATAATA
1 TAATTTATTTATAATA
*
79949181 TAATTAATTTAATAATA
1 TAATTTATTT-ATAATA
79949198 TAATTTAT
1 TAATTTAT
79949206 AACTAATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 8 0.24
15 5 0.15
16 4 0.12
17 16 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATTTATTTATAATA
Found at i:79949185 original size:31 final size:28
Alignment explanation
Indices: 79949150--79949230 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
79949140 TGTCTTTATT
**
79949150 TAATTTATTTCTTAATATAATATTTATAATA
1 TAATTTATTTAATAATAT-A-ATTTATAA-A
* *
79949181 TAATTAATTTAATAATATAATTTATAAC
1 TAATTTATTTAATAATATAATTTATAAA
* * *
79949209 TAATTTATATATTTATATAATT
1 TAATTTATTTAATAATATAATT
79949231 AAATCATGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 18 0.43
29 8 0.19
30 1 0.02
31 15 0.36
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (28 bp):
TAATTTATTTAATAATATAATTTATAAA
Found at i:79949207 original size:12 final size:11
Alignment explanation
Indices: 79949179--79949217 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
79949169 ATATTTATAA
79949179 TATAATTAATT
1 TATAATTAATT
79949190 TAATAATATAATT
1 T-ATAAT-TAATT
*
79949203 TATAACTAATT
1 TATAATTAATT
79949214 TATA
1 TATA
79949218 TATTTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 10 0.40
12 9 0.36
13 6 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (11 bp):
TATAATTAATT
Found at i:79954536 original size:40 final size:40
Alignment explanation
Indices: 79954475--79954684 Score: 180
Period size: 40 Copynumber: 5.3 Consensus size: 40
79954465 CTAACGGGGT
* * *
79954475 TAAGTCCCGAAGAC-ATGTGTGCTAGTGATTA-ATTCCGGGC
1 TAAGTCCCGAAGGCAAT-TGTGCGAGTGACTATA-TCCGGGC
* *
79954515 TAAGTCCCGAAGGCAATTGTGCGAGTTAC-AAATTCCGGGC
1 TAAGTCCCGAAGGCAATTGTGCGAGTGACTATA-TCCGGGC
* *
79954555 TAAGTCTCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGC
1 TAAGTCCCGAAGGCAATTGTGCGAG-TGACTATATCCGGGC
* * * * *
79954595 TAAGACCCGAAGGCATTTATGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCAATTGTGCGAGTGACTATATCCGGGC
* * * **
79954635 TAAGACCCGAAAGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCAATTGTGCGAGTGACTATATCCGGGC
*
79954673 TAAATCCCGAAG
1 TAAGTCCCGAAG
79954685 ATACTTGGGT
Statistics
Matches: 142, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
38 12 0.08
39 18 0.13
40 107 0.75
41 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCAATTGTGCGAGTGACTATATCCGGGC
Found at i:79962403 original size:17 final size:17
Alignment explanation
Indices: 79962361--79962403 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
79962351 CTCCTATTCT
*
79962361 CTCCTAATTTATTTTTA
1 CTCCTAATTGATTTTTA
*
79962378 CTCCCAATTGATTTTTA
1 CTCCTAATTGATTTTTA
*
79962395 CTTCTAATT
1 CTCCTAATT
79962404 CCTAATCCCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.02, T:0.53
Consensus pattern (17 bp):
CTCCTAATTGATTTTTA
Found at i:79964428 original size:21 final size:21
Alignment explanation
Indices: 79964389--79964428 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79964379 TTAGATCAAG
*
79964389 TATCGATACTTGGGTAAAATT
1 TATCGATACTTGCGTAAAATT
79964410 TATCGATACCTTGCG-AAAA
1 TATCGATA-CTTGCGTAAAA
79964429 GTACTGATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (21 bp):
TATCGATACTTGCGTAAAATT
Found at i:79971383 original size:22 final size:21
Alignment explanation
Indices: 79971358--79971405 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
79971348 TCACACAGCC
79971358 GTGTGCCTCCTTT-CACATGGGT
1 GTGTGCCTCCTTTGCAC--GGGT
*
79971380 GTGTG-CTTCTTTGCACGGGT
1 GTGTGCCTCCTTTGCACGGGT
79971400 GTGTGC
1 GTGTGC
79971406 TTCTTCGCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 9 0.39
21 6 0.26
22 8 0.35
ACGTcount: A:0.06, C:0.23, G:0.33, T:0.38
Consensus pattern (21 bp):
GTGTGCCTCCTTTGCACGGGT
Found at i:79971423 original size:20 final size:20
Alignment explanation
Indices: 79971380--79971423 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
79971370 TCACATGGGT
* * *
79971380 GTGTGCTTCTTTGCACGGGT
1 GTGTGCTTCTTCGCACAGGC
79971400 GTGTGCTTCTTCGCACAGGC
1 GTGTGCTTCTTCGCACAGGC
79971420 GTGT
1 GTGT
79971424 AGACTCCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.23, G:0.34, T:0.36
Consensus pattern (20 bp):
GTGTGCTTCTTCGCACAGGC
Found at i:79971423 original size:22 final size:20
Alignment explanation
Indices: 79971376--79971415 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
79971366 CCTTTCACAT
*
79971376 GGGTGTGTGCTTCTTTGCAC
1 GGGTGTGTGCTTCTTCGCAC
79971396 GGGTGTGTGCTTCTTCGCAC
1 GGGTGTGTGCTTCTTCGCAC
79971416 AGGCGTGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.23, G:0.35, T:0.38
Consensus pattern (20 bp):
GGGTGTGTGCTTCTTCGCAC
Found at i:79973458 original size:11 final size:11
Alignment explanation
Indices: 79973442--79973467 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
79973432 TAACCTAATT
79973442 GACTAGATAAA
1 GACTAGATAAA
79973453 GACTAGATAAA
1 GACTAGATAAA
79973464 GACT
1 GACT
79973468 GGATTGGCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (11 bp):
GACTAGATAAA
Found at i:79978036 original size:48 final size:48
Alignment explanation
Indices: 79977965--79978200 Score: 391
Period size: 48 Copynumber: 4.9 Consensus size: 48
79977955 CAAGATAAAT
*
79977965 ATATGTATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
79978013 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
79978061 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
79978109 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
79978157 ATACGTATATGTGATAAAGCCGAAGGGCTAGTGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
79978201 GGAGGTGTGT
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 179 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:79978460 original size:74 final size:74
Alignment explanation
Indices: 79978336--79978487 Score: 259
Period size: 74 Copynumber: 2.1 Consensus size: 74
79978326 ACATGAAACT
* *
79978336 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTAGAGATTATGTCCGAGTAAGACCCGAT
*
79978401 GACTACGTG
66 AACTACGTG
*
79978410 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTGTCCGAGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTAGAGATTATGTCCGAGTAAGACCCGAT
*
79978475 AACTTCGTG
66 AACTACGTG
79978484 TGGA
1 TGGA
79978488 GATTTCATCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (74 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTAGAGATTATGTCCGAGTAAGACCCGAT
AACTACGTG
Found at i:79978492 original size:37 final size:37
Alignment explanation
Indices: 79978347--79978491 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
79978337 GGAAATATAT
79978347 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
79978384 TCCGGGTAAGACCCGATGACTACGTGTGGAAATATAT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TATG
* *
79978421 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
79978458 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
79978492 TCATCTGAGC
Statistics
Matches: 98, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
36 2 0.02
37 93 0.95
38 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:79979733 original size:109 final size:109
Alignment explanation
Indices: 79979540--79979944 Score: 427
Period size: 109 Copynumber: 3.7 Consensus size: 109
79979530 TCATTACCAG
* * * * ** *
79979540 CTCACGATGCTACTCACACAAGCTGCAAAGAATATGCAACATATGCAAGATCTCAGCCATCACTA
1 CTCACGATACTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAACCATCACTA
* * *
79979605 CGGTCTGTATCACTAGTACATAATACCTGCTAAATAACCATCAT
66 CGGTCTGTATCACTGGTACATAGTACCTGCTAAATAATCATCAT
* * *
79979649 CTCACGATATTGCTCACACGAGCTGTAGAGAATCCGCAACATATTG-AAGATCTCAACCATCAAT
1 CTCACGATACTGCTCACACAAGCTGTAGAGAATCCGCAACATA-TGCAAGATCTCAACCATCACT
* * * * *
79979713 ACGGTCTATATCACCGGTACATAGTACCTACTAAACAATCATCGT
65 ACGGTCTGTATCACTGGTACATAGTACCTGCTAAATAATCATCAT
* * * * **
79979758 CTCAC-AGTGCTACTCACACAAGCTATAGAGAATCCGTAACATATGCAAGATCTCAACCATTGCT
1 CTCACGA-TACTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAACCATCACT
* * * * *
79979822 ACGGCCTGTATCATTGGTACATAGTACATGCTAAGTAATCACCCAT
65 ACGGTCTGTATCACTGGTACATAGTACCTGCTAAATAATCA-TCAT
* * *** * * *
79979868 CTCACGATACTGCTCACACAAACTGTAGAAAATCTAAAACATATGCAGGATCTCAGCCATCGCTA
1 CTCACGATACTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAACCATCACTA
*
79979933 CGGTTTGTATCA
66 CGGTCTGTATCA
79979945 TCGACAAAGC
Statistics
Matches: 241, Mismatches: 50, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
108 3 0.01
109 171 0.71
110 66 0.27
111 1 0.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (109 bp):
CTCACGATACTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAACCATCACTA
CGGTCTGTATCACTGGTACATAGTACCTGCTAAATAATCATCAT
Found at i:79984268 original size:16 final size:17
Alignment explanation
Indices: 79984232--79984268 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
79984222 AATTTTATTT
79984232 TAATAATAAATTTTAAA
1 TAATAATAAATTTTAAA
79984249 -AATAA-AAATTTTAAA
1 TAATAATAAATTTTAAA
79984264 TAATA
1 TAATA
79984269 TTCTTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTTAAA
Found at i:80001811 original size:16 final size:15
Alignment explanation
Indices: 80001786--80001815 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80001776 AGTTGCAAGA
80001786 GTTTTTAGACCGAGG
1 GTTTTTAGACCGAGG
80001801 GTTTATTAGACCGAG
1 GTTT-TTAGACCGAG
80001816 CATGTCTCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.13, G:0.30, T:0.33
Consensus pattern (15 bp):
GTTTTTAGACCGAGG
Found at i:80003370 original size:14 final size:14
Alignment explanation
Indices: 80003351--80003390 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
80003341 TTGATTGGCT
80003351 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
80003365 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
80003379 GGAAAATGTTTT
1 GTAAAATGTTTT
80003391 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:80003403 original size:34 final size:35
Alignment explanation
Indices: 80003359--80003425 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
80003349 CTGTAAAATG
* *
80003359 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
80003393 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTGGAAAATATTTT
80003426 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:80003412 original size:20 final size:20
Alignment explanation
Indices: 80003374--80003413 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80003364 CGTAAAATGA
**
80003374 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
80003394 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
80003414 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:80008418 original size:21 final size:21
Alignment explanation
Indices: 80008392--80008453 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
80008382 ATTGGGTGGA
80008392 TCAGCTCTTACGAGC-TCTTGT
1 TCAGCTCTTACGAGCTTC-TGT
* *
80008413 TCAGCTCTTACAAACTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
80008434 TCAGCT-TT-CGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
80008453 T
1 T
80008454 GGCATATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 10 0.28
20 2 0.06
21 22 0.61
22 2 0.06
ACGTcount: A:0.16, C:0.27, G:0.16, T:0.40
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:80014561 original size:23 final size:23
Alignment explanation
Indices: 80014526--80014572 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
80014516 CGATCGCATC
80014526 ACACACCGAAATAATCCAACCAA
1 ACACACCGAAATAATCCAACCAA
*
80014549 ACACACC-AGAATAATCCACCCAA
1 ACACACCGA-AATAATCCAACCAA
80014572 A
1 A
80014573 TTCTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.51, C:0.36, G:0.04, T:0.09
Consensus pattern (23 bp):
ACACACCGAAATAATCCAACCAA
Found at i:80014689 original size:24 final size:24
Alignment explanation
Indices: 80014641--80014695 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
80014631 TATTCAATTT
80014641 TCATA-TTTCAATTCAATCACTTTC
1 TCATATTTTCAATTCAATCAC-TTC
*
80014665 TCATATTTTCCATTCAAATCA-TTC
1 TCATATTTTCAATTC-AATCACTTC
80014689 TCA-ATTT
1 TCATATTT
80014696 AATCACAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 11 0.39
25 8 0.29
26 5 0.18
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (24 bp):
TCATATTTTCAATTCAATCACTTC
Found at i:80015470 original size:22 final size:22
Alignment explanation
Indices: 80015445--80015486 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
80015435 TTTCCTTCTT
* *
80015445 TTTTTCTTTGTTTCTTTTATTC
1 TTTTACTTTATTTCTTTTATTC
80015467 TTTTACTTTATTTCTTTTAT
1 TTTTACTTTATTTCTTTTAT
80015487 GTATTAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.10, C:0.12, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTTACTTTATTTCTTTTATTC
Found at i:80015508 original size:9 final size:10
Alignment explanation
Indices: 80015494--80015553 Score: 60
Period size: 9 Copynumber: 6.5 Consensus size: 10
80015484 TATGTATTAG
80015494 TTAATAA-AA
1 TTAATAATAA
80015503 TTAATAATAA
1 TTAATAATAA
80015513 -TAATAATACA
1 TTAATAATA-A
80015523 -TAATAATAA
1 TTAATAATAA
80015532 -TAATAAT-A
1 TTAATAATAA
*
80015540 -TAATAATAT
1 TTAATAATAA
80015549 TTAAT
1 TTAAT
80015554 TTATAATATA
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
8 8 0.17
9 23 0.50
10 15 0.33
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAATAATAA
Found at i:80015512 original size:3 final size:3
Alignment explanation
Indices: 80015495--80015547 Score: 74
Period size: 3 Copynumber: 17.7 Consensus size: 3
80015485 ATGTATTAGT
80015495 TAA TAA -AA TTAA TAA TAA TAA TAA TACA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA -TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
80015540 TAA TAA TA
1 TAA TAA TA
80015548 TTTAATTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.09
3 37 0.80
4 5 0.11
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:80015528 original size:19 final size:17
Alignment explanation
Indices: 80015495--80015547 Score: 74
Period size: 19 Copynumber: 3.1 Consensus size: 17
80015485 ATGTATTAGT
80015495 TAATAA-AAT-TAATAA
1 TAATAATAATATAATAA
80015510 TAATAATAATACATAATAA
1 TAATAATAAT--ATAATAA
80015529 TAATAATAATATAATAA
1 TAATAATAATATAATAA
80015546 TA
1 TA
80015548 TTTAATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
15 6 0.18
16 3 0.09
17 9 0.26
19 16 0.47
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (17 bp):
TAATAATAATATAATAA
Found at i:80017629 original size:12 final size:13
Alignment explanation
Indices: 80017600--80017631 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80017590 TATCTAGATT
80017600 ATATTTTTATTAG
1 ATATTTTTATTAG
80017613 A-ATTTTTATTA-
1 ATATTTTTATTAG
80017624 ATATTTTT
1 ATATTTTT
80017632 TGAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 16 0.89
13 1 0.06
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (13 bp):
ATATTTTTATTAG
Found at i:80028101 original size:49 final size:50
Alignment explanation
Indices: 80028032--80028277 Score: 271
Period size: 49 Copynumber: 4.9 Consensus size: 50
80028022 ATCTATTGTG
* * *
80028032 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
80028082 -GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * ** * **
80028132 CGATCACGGGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
80028182 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
80028232 -GGTCGCATGTGTATTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
80028278 GCTTTGGCTA
Statistics
Matches: 161, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 79 0.49
50 46 0.29
51 36 0.22
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:80030302 original size:24 final size:24
Alignment explanation
Indices: 80030250--80030308 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
80030240 GAAGAAAATG
* * *
80030250 GAGACAAAGACAAAGACGGGGGTA
1 GAGATAAAGATAAAGACGAGGGTA
*
80030274 GAGATAAAGATAAAGACGAGGGTT
1 GAGATAAAGATAAAGACGAGGGTA
*
80030298 GAGATGAAGAT
1 GAGATAAAGAT
80030309 GAATACAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.36, T:0.12
Consensus pattern (24 bp):
GAGATAAAGATAAAGACGAGGGTA
Found at i:80030996 original size:43 final size:43
Alignment explanation
Indices: 80030935--80031024 Score: 144
Period size: 43 Copynumber: 2.1 Consensus size: 43
80030925 AAAAATTTGT
** *
80030935 GGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCAACGCTTTTAGC
1 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCAACGCTTTTAGC
*
80030978 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCAACGCTTTTAGC
80031021 GGCG
1 GGCG
80031025 CTTTTTCTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.22
Consensus pattern (43 bp):
GGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCAACGCTTTTAGC
Found at i:80031042 original size:43 final size:43
Alignment explanation
Indices: 80030949--80031046 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
80030939 TTTGTGGGAG
*
80030949 AAGCGCCGCTAAAGGTCAACGCTTTTAGCGGCGTTTGTGAAAA
1 AAGCGCCGCTAAAGGTCAACGCTTTTAGCGGCGTTTGTCAAAA
* * * *
80030992 AAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGCTTTTTCTACA
1 AAGCGCCGCTAAAGGTCAACGCTTTTAGCGGCG-TTTGTCAAAA
80031036 AA-CGCCGCTAA
1 AAGCGCCGCTAA
80031047 TTTTGGCAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
43 41 0.84
44 8 0.16
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCAACGCTTTTAGCGGCGTTTGTCAAAA
Found at i:80031134 original size:31 final size:31
Alignment explanation
Indices: 80031099--80031181 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
80031089 CTTCCTGCAT
* * *
80031099 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATACAACCAAAAACAACAAATATAACA
* * *
80031130 TAAAATACAGCCAAAAACAGCAAATTTAACA
1 TAAAATACAACCAAAAACAACAAATATAACA
*
80031161 TAAAAAATACAACAAAAAACA
1 T--AAAATACAACCAAAAACA
80031182 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 26 0.62
33 16 0.38
ACGTcount: A:0.64, C:0.18, G:0.02, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAACA
Found at i:80031464 original size:15 final size:16
Alignment explanation
Indices: 80031444--80031474 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
80031434 CTCGCTGCAG
80031444 CTGCTGCCTCC-CTCT
1 CTGCTGCCTCCGCTCT
80031459 CTGCTGCCTCCGCTCT
1 CTGCTGCCTCCGCTCT
80031475 AAGTTGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.00, C:0.52, G:0.16, T:0.32
Consensus pattern (16 bp):
CTGCTGCCTCCGCTCT
Found at i:80034319 original size:93 final size:93
Alignment explanation
Indices: 80034204--80034374 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80034194 GCCCATAAGT
* *
80034204 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80034269 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
80034297 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80034362 CGAGTTCGGATGC
66 CGAGCTCGGATGC
80034375 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:80034371 original size:46 final size:46
Alignment explanation
Indices: 80034196--80034371 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
80034186 TGTAACCCGC
* * *
80034196 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
80034242 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
80034292 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
80034335 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80034372 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:80039827 original size:9 final size:9
Alignment explanation
Indices: 80039813--80039940 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
80039803 ATGTATTAGT
80039813 TAAGTTATG
1 TAAGTTATG
80039822 TAAGTTGTTATG
1 TAA---GTTATG
* *
80039834 TACGTTATA
1 TAAGTTATG
*
80039843 TGAGTTATG
1 TAAGTTATG
*
80039852 TAAATTATG
1 TAAGTTATG
80039861 TAAGTTATG
1 TAAGTTATG
*
80039870 TGAGTTATG
1 TAAGTTATG
80039879 TAAGTTGTTATG
1 TAA---GTTATG
*
80039891 TAAATTATG
1 TAAGTTATG
*
80039900 TAAGTTATA
1 TAAGTTATG
*
80039909 TGAGTTATG
1 TAAGTTATG
80039918 TAAGTTATG
1 TAAGTTATG
* *
80039927 TAATTTATT
1 TAAGTTATG
80039936 TAAGT
1 TAAGT
80039941 AATGATCAAT
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
9 77 0.82
12 17 0.18
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:80039940 original size:57 final size:57
Alignment explanation
Indices: 80039813--80039940 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
80039803 ATGTATTAGT
** * *
80039813 TAAGTTATGTAAGTTGTTATGTACGTTATATGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATATAAATTATGTAAGTTATG
* * * *
80039870 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATATAAATTATGTAAGTTATG
* *
80039927 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
80039941 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATATAAGTTATATAAATTATGTAAGTTATG
Found at i:80040486 original size:241 final size:241
Alignment explanation
Indices: 80040060--80040737 Score: 1230
Period size: 241 Copynumber: 2.8 Consensus size: 241
80040050 TGAATATAGT
* *
80040060 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACTTAGGAAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
* *
80040125 TCGATATAAGGCAACCCATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTGAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* * *
80040190 AGGTTAGAGAGAAAGTAAGCTATTGTTGTAATTTTAATGGACAAGCAAACTACATGGTAATAAAT
131 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
80040255 ATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
80040301 AATTTTTTAAGATTCATCATACATGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
80040366 TCGATATAAGGCAACCCGTCAGTTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
80040431 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
*
80040496 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
80040542 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTTTATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
80040607 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
80040672 AGGTTGGAGAGAAGGTCAGCTATATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAA
131 AGGTTGGAGAGAAAGTCAGC--TATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAA
80040737 A
194 A
80040738 ATTAATTCAT
Statistics
Matches: 421, Mismatches: 14, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
241 377 0.90
243 44 0.10
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:80044006 original size:11 final size:11
Alignment explanation
Indices: 80043992--80044041 Score: 64
Period size: 11 Copynumber: 4.4 Consensus size: 11
80043982 AATATTTTAA
80043992 AAATTCTTGAC
1 AAATTCTTGAC
* *
80044003 AAATTATTTTGTC
1 AAA-T-TCTTGAC
80044016 AAATTCTTGAC
1 AAATTCTTGAC
80044027 AAATTCTTGAC
1 AAATTCTTGAC
80044038 AAAT
1 AAAT
80044042 ATACAAGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 23 0.70
12 2 0.06
13 8 0.24
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.40
Consensus pattern (11 bp):
AAATTCTTGAC
Found at i:80044441 original size:18 final size:19
Alignment explanation
Indices: 80044420--80044455 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
80044410 TTTGAAATTC
80044420 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
80044438 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
80044456 CAGAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:80045114 original size:40 final size:39
Alignment explanation
Indices: 80045021--80045131 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 39
80045011 CAATTAAACA
* *
80045021 TTTAGTGGCGTTTTACAAAAGCGTCGCTAATTCTCAGTT
1 TTTAGTGGCTTTTTACAAAAGCGCCGCTAATTCTCAGTT
* * *
80045060 TTT-GCGGCGTTTTTTACGAAAGCGCCACTAATTCTCTA-TT
1 TTTAGTGGC--TTTTTACAAAAGCGCCGCTAATTCTC-AGTT
*
80045100 TTTAGTGGCATTTTTACAAAAACGCCGCTAAT
1 TTTAGTGGC-TTTTTACAAAAGCGCCGCTAAT
80045132 GCCTCTGCAC
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
38 4 0.07
39 3 0.05
40 46 0.79
41 5 0.09
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (39 bp):
TTTAGTGGCTTTTTACAAAAGCGCCGCTAATTCTCAGTT
Found at i:80046461 original size:28 final size:28
Alignment explanation
Indices: 80046425--80046491 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
80046415 AGTTTATGGA
* *
80046425 TTAGTGTTTATGGTTT-ATGTTTTAAAAT
1 TTAGGGTTTAGGGTTTAATG-TTTAAAAT
*
80046453 TTAGGGTTTAGGGTTTAATGTTTAAGAT
1 TTAGGGTTTAGGGTTTAATGTTTAAAAT
80046481 TTAAGGGTTTA
1 TT-AGGGTTTA
80046492 CAGAAAGCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 23 0.68
29 11 0.32
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (28 bp):
TTAGGGTTTAGGGTTTAATGTTTAAAAT
Found at i:80046476 original size:21 final size:21
Alignment explanation
Indices: 80046429--80046491 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
80046419 TATGGATTAG
* * *
80046429 TGTTTATGGTTTATGTTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
** *
80046450 AATTTAGGGTTTAGGGTTTAA
1 TGTTTAAGGTTTAGGGTTTAA
*
80046471 TGTTTAAGATTTAAGGGTTTA
1 TGTTTAAGGTTT-AGGGTTTA
80046492 CAGAAAGCTA
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
21 24 0.75
22 8 0.25
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (21 bp):
TGTTTAAGGTTTAGGGTTTAA
Found at i:80046826 original size:41 final size:41
Alignment explanation
Indices: 80046780--80047088 Score: 347
Period size: 41 Copynumber: 7.6 Consensus size: 41
80046770 AACTTTTTGC
80046780 GGCG-TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGT
1 GGCGTTTTGGA-CAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
80046821 AGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * *
80046862 GGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
80046903 GGCGTTTGGGATAAAAATGCCGCAATTGATCAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * *
80046944 GGTG-TTTGGAGAAAAACACCGCTATTGACCAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* ** *
80046984 GGCGTTTTGGCCAAAAACGTAGCTATTGACCAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
* * * * * *
80047025 GGCGTTTTTGCCAAAAACGCCGTTATAGTTTAGTTTTTAGT
1 GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
*
80047066 GGCGTTTCGGAC--AAACGCCGCTA
1 GGCGTTTTGGACAAAAACGCCGCTA
80047089 ATGTTTATTA
Statistics
Matches: 233, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
39 10 0.04
40 33 0.14
41 184 0.79
42 6 0.03
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (41 bp):
GGCGTTTTGGACAAAAACGCCGCTATTGATCAGTTTTTAGT
Found at i:80047060 original size:122 final size:122
Alignment explanation
Indices: 80046780--80047072 Score: 347
Period size: 122 Copynumber: 2.4 Consensus size: 122
80046770 AACTTTTTGC
* * *
80046780 GGCGTTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTAGCGT-TTTGGATAAAAACGCCAC
1 GGCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGT-G-GTGTTTGGAGAAAAACACCAC
* * *
80046844 AATTGATCAGTTTTTAGTGGCGTTTTGGATAAAAACGCCACAATTGATCAGTTTTTAGT
64 AATTGACCAGTTTTTAGTGGCGTTTTGGACAAAAACGCCACAATTGACCAGTTTTTAGT
** * * * *
80046903 GGCGTTTGGGATAAAAATGCCGCAATTGATCAGTTTTTAGTGGTGTTTGGAGAAAAACACCGCTA
1 GGCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTTGGAGAAAAACACCACAA
* * *
80046968 TTGACCAGTTTTTAGTGGCGTTTTGGCCAAAAACG-TAGCTATTGACCAGTTTTTAGT
66 TTGACCAGTTTTTAGTGGCGTTTTGGACAAAAACGCCA-CAATTGACCAGTTTTTAGT
** * * * * *
80047025 GGCGTTTTTGCCAAAAACGCCGTTATAGTTTAGTTTTTAGTGGCGTTT
1 GGCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTT
80047073 CGGACAAACG
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
121 3 0.02
122 103 0.73
123 36 0.25
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (122 bp):
GGCGTTTGGGCCAAAAACGCCGCTATTGATCAGTTTTTAGTGGTGTTTGGAGAAAAACACCACAA
TTGACCAGTTTTTAGTGGCGTTTTGGACAAAAACGCCACAATTGACCAGTTTTTAGT
Found at i:80048456 original size:22 final size:22
Alignment explanation
Indices: 80048428--80048476 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
80048418 CATCATAATA
*
80048428 CACATTTTTACAATTCAACGAG
1 CACATTTTCACAATTCAACGAG
*
80048450 TACATTTTCACAATTCAACGAG
1 CACATTTTCACAATTCAACGAG
80048472 CACAT
1 CACAT
80048477 AATACAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (22 bp):
CACATTTTCACAATTCAACGAG
Found at i:80062686 original size:12 final size:12
Alignment explanation
Indices: 80062655--80062686 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
80062645 TTGAGAGAAC
80062655 TTGAAAAAGCCT
1 TTGAAAAAGCCT
*
80062667 TTGGAAAAGCCT
1 TTGAAAAAGCCT
80062679 TTGAAAAA
1 TTGAAAAA
80062687 CAAAAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:80062710 original size:12 final size:12
Alignment explanation
Indices: 80062688--80062712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80062678 TTTGAAAAAC
80062688 AAAAAGAAAATG
1 AAAAAGAAAATG
80062700 AAAAAGAAAATG
1 AAAAAGAAAATG
80062712 A
1 A
80062713 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:80062719 original size:18 final size:18
Alignment explanation
Indices: 80062679--80062732 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
80062669 GGAAAAGCCT
* *
80062679 TTGAAAAACAAAAAGAAA
1 TTGAAAAAGAAAATGAAA
* *
80062697 ATGAAAAAGAAAATGAGA
1 TTGAAAAAGAAAATGAAA
*
80062715 TTGAAAAAGAGAATGAAA
1 TTGAAAAAGAAAATGAAA
80062733 AAGAGTTTGA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.13
Consensus pattern (18 bp):
TTGAAAAAGAAAATGAAA
Found at i:80062744 original size:30 final size:30
Alignment explanation
Indices: 80062688--80062786 Score: 83
Period size: 30 Copynumber: 3.3 Consensus size: 30
80062678 TTTGAAAAAC
**
80062688 AAAAAGAAAATGAAAAAGAAAATGAGATTG
1 AAAAAGAAAATGAAAAAGAAAATGAGAGAG
* ***
80062718 AAAAAGAGAATGAAAAAGAGTTTGAGAGAG
1 AAAAAGAAAATGAAAAAGAAAATGAGAGAG
** * * *
80062748 AAAAAGAATGTGAACAAGAAAA-AAGAGTGG
1 AAAAAGAAAATGAAAAAGAAAATGAGAG-AG
80062778 AAAAAGAAA
1 AAAAAGAAA
80062787 TTGAGATAAA
Statistics
Matches: 52, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
29 4 0.08
30 48 0.92
ACGTcount: A:0.64, C:0.01, G:0.24, T:0.11
Consensus pattern (30 bp):
AAAAAGAAAATGAAAAAGAAAATGAGAGAG
Found at i:80062784 original size:18 final size:19
Alignment explanation
Indices: 80062748--80062786 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
80062738 TTTGAGAGAG
*
80062748 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
80062767 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
80062785 AA
1 AA
80062787 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:80074598 original size:27 final size:27
Alignment explanation
Indices: 80074561--80074762 Score: 217
Period size: 27 Copynumber: 7.4 Consensus size: 27
80074551 TAAATTGTAC
*
80074561 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80074588 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
80074615 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80074641 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
80074669 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80074696 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
80074724 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80074751 AGCACTGAGTGT
1 AGCACTAAGTGT
80074763 ACGGACTTAA
Statistics
Matches: 149, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 125 0.84
28 24 0.16
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:80074622 original size:54 final size:54
Alignment explanation
Indices: 80074562--80074762 Score: 251
Period size: 54 Copynumber: 3.7 Consensus size: 54
80074552 AAATTGTACA
* * *
80074562 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
80074616 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
80074670 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
80074725 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGT
80074763 ACGGACTTAA
Statistics
Matches: 125, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.64
55 44 0.35
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:80082700 original size:27 final size:27
Alignment explanation
Indices: 80082663--80082867 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
80082653 TAAATTGTAC
*
80082663 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80082690 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
80082717 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
80082743 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
80082771 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80082798 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
80082826 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
80082853 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80082868 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:80082724 original size:54 final size:54
Alignment explanation
Indices: 80082664--80082867 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
80082654 AAATTGTACA
* * *
80082664 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
80082718 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
80082772 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
80082827 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
80082868 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Done.