Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 237 of 362
Found at i:80089050 original size:15 final size:16
Alignment explanation
Indices: 80089030--80089059 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80089020 TTTTTGGATG
80089030 AATACTAG-TTTTATT
1 AATACTAGATTTTATT
80089045 AATACTAGATTTTAT
1 AATACTAGATTTTAT
80089060 CACACCCACG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (16 bp):
AATACTAGATTTTATT
Found at i:80089834 original size:19 final size:18
Alignment explanation
Indices: 80089812--80089851 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
80089802 AAAATTATTT
80089812 ATAAATATCAAATAATAAA
1 ATAAATATCAAAT-ATAAA
*
80089831 ATAAATCTCAAATATAAA
1 ATAAATATCAAATATAAA
80089849 ATA
1 ATA
80089852 CTCATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (18 bp):
ATAAATATCAAATATAAA
Found at i:80091125 original size:19 final size:17
Alignment explanation
Indices: 80091101--80091138 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 17
80091091 CTATAACATT
80091101 TTTTTTATGAATAATTATA
1 TTTTTTAT-AATAA-TATA
80091120 TTTTTTATAATAATATA
1 TTTTTTATAATAATATA
80091137 TT
1 TT
80091139 AAACACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTTTATAATAATATA
Found at i:80092734 original size:18 final size:18
Alignment explanation
Indices: 80092711--80092747 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
80092701 AAGAGAATAA
80092711 CACACTCGGGCGTACATC
1 CACACTCGGGCGTACATC
80092729 CACACTCGGGCGTACATC
1 CACACTCGGGCGTACATC
80092747 C
1 C
80092748 TTCAGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.41, G:0.22, T:0.16
Consensus pattern (18 bp):
CACACTCGGGCGTACATC
Found at i:80099216 original size:15 final size:15
Alignment explanation
Indices: 80099196--80099252 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
80099186 CGATGAATTT
80099196 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
80099211 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
80099226 ATTGAATTTATATTG
1 ATTGAATTTATATTG
80099241 ATTGAA-TTATAT
1 ATTGAATTTATAT
80099253 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:80099652 original size:21 final size:21
Alignment explanation
Indices: 80099623--80099682 Score: 102
Period size: 21 Copynumber: 2.9 Consensus size: 21
80099613 GGCTTTATCG
80099623 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCGTGTGTCGT
*
80099644 ATCAAGCACCTCGTGTGTCGT
1 ATCAGGCACCTCGTGTGTCGT
*
80099665 ATCAGGTACCTCGTGTGT
1 ATCAGGCACCTCGTGTGT
80099683 TGTTTTAGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.30
Consensus pattern (21 bp):
ATCAGGCACCTCGTGTGTCGT
Found at i:80101241 original size:21 final size:21
Alignment explanation
Indices: 80101198--80101242 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
80101188 CCTAATCTCA
* *
80101198 AACCCTAAAATATAAAGCACT
1 AACCCTAAAATAAAAAACACT
* *
80101219 AACCTTAAAATAAAAAACCCT
1 AACCCTAAAATAAAAAACACT
80101240 AAC
1 AAC
80101243 ACCATAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.24, G:0.02, T:0.18
Consensus pattern (21 bp):
AACCCTAAAATAAAAAACACT
Found at i:80106241 original size:33 final size:34
Alignment explanation
Indices: 80106177--80106242 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
80106167 TATAAATTGA
80106177 TGGGATTATTTTAAATTCATATTTTTTTTACTTT
1 TGGGATTATTTTAAATTCATATTTTTTTTACTTT
80106211 TGGGATTATTTTAAATTCATA-TTTTTTTACTT
1 TGGGATTATTTTAAATTCATATTTTTTTTACTT
80106243 ATGAGATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 11 0.34
34 21 0.66
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.61
Consensus pattern (34 bp):
TGGGATTATTTTAAATTCATATTTTTTTTACTTT
Found at i:80117150 original size:46 final size:46
Alignment explanation
Indices: 80117098--80117188 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
80117088 CAATGCTCTT
80117098 AGTTGTTGGAATGATTGAATTGCTGCCAGTGTTTTGGGAAGTTGGA
1 AGTTGTTGGAATGATTGAATTGCTGCCAGTGTTTTGGGAAGTTGGA
80117144 AGTTGTTGGAATGATTGAATTGCTGCCAGTGTTTTGGGAAGTTGG
1 AGTTGTTGGAATGATTGAATTGCTGCCAGTGTTTTGGGAAGTTGG
80117189 CCAGTTCAGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.21, C:0.07, G:0.35, T:0.37
Consensus pattern (46 bp):
AGTTGTTGGAATGATTGAATTGCTGCCAGTGTTTTGGGAAGTTGGA
Found at i:80130109 original size:50 final size:50
Alignment explanation
Indices: 80130026--80130123 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
80130016 ATACAGTGGC
* * * *
80130026 ACAAGTAGAATCCGTGTAGAACTACTTTTCTTTTATTTGATATTGATTGT
1 ACAAGTAGAATCCGTATAAAACTACTTTCCTTTTATTTGACATTGATTGT
*
80130076 ACAAGTAGAATCCGTATAAAACTTCTTTCCTTTTATTTGACATTGATT
1 ACAAGTAGAATCCGTATAAAACTACTTTCCTTTTATTTGACATTGATT
80130124 AGAATAAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (50 bp):
ACAAGTAGAATCCGTATAAAACTACTTTCCTTTTATTTGACATTGATTGT
Found at i:80130665 original size:22 final size:21
Alignment explanation
Indices: 80130635--80130693 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
80130625 ATACAATCGT
*
80130635 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
80130657 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
80130680 AGATTTGATTTGTA
1 AGATTTGATTTGTA
80130694 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:80135806 original size:22 final size:21
Alignment explanation
Indices: 80135776--80135834 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
80135766 ATACAATCGT
*
80135776 AGATTTGATATGTAATCTTAGG
1 AGATTTGATTTGTAATCTTA-G
*
80135798 AGATATGATTTTGTAAATCTTAG
1 AGATTTGA-TTTGT-AATCTTAG
80135821 AGATTTGATTTGTA
1 AGATTTGATTTGTA
80135835 GATACCATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 1 0.03
22 12 0.38
23 12 0.38
24 7 0.22
ACGTcount: A:0.32, C:0.03, G:0.20, T:0.44
Consensus pattern (21 bp):
AGATTTGATTTGTAATCTTAG
Found at i:80141646 original size:19 final size:19
Alignment explanation
Indices: 80141618--80141682 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 19
80141608 TTGCATCCAT
80141618 AATGAACTCAGACCAACTC
1 AATGAACTCAGACCAACTC
* *
80141637 AATGAGCTCAGATGCTCACATCCAC
1 AATGAACTCAGA--C-CA-A--CTC
80141662 AATGAACTCAGACCAACTC
1 AATGAACTCAGACCAACTC
80141681 AA
1 AA
80141683 CGAGCTCTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 12
0.69 0.08 0.23
Matches are distributed among these distances:
19 15 0.42
21 2 0.06
22 4 0.11
23 2 0.06
25 13 0.36
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.17
Consensus pattern (19 bp):
AATGAACTCAGACCAACTC
Found at i:80141660 original size:44 final size:45
Alignment explanation
Indices: 80141611--80141702 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 45
80141601 ATATGCATTG
* *
80141611 CATCCATAATGAACTCAGACCAACTCAATGAGCTCAGATGC-TCA
1 CATCCACAATGAACTCAGACCAACTCAACGAGCTCAGATGCTTCA
*
80141655 CATCCACAATGAACTCAGACCAACTCAACGAGCTCTGATGCTTCA
1 CATCCACAATGAACTCAGACCAACTCAACGAGCTCAGATGCTTCA
80141700 CAT
1 CAT
80141703 ATATCGCGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 38 0.86
45 6 0.14
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.21
Consensus pattern (45 bp):
CATCCACAATGAACTCAGACCAACTCAACGAGCTCAGATGCTTCA
Found at i:80141785 original size:45 final size:45
Alignment explanation
Indices: 80141621--80141787 Score: 153
Period size: 45 Copynumber: 3.7 Consensus size: 45
80141611 CATCCATAAT
* * * ** *
80141621 GAACTCAGACCAACTCAATGAGCTCAGA-TGCTCACATCCA-CAAT
1 GAACTTAGACCAACTCAACGAGCTCAGATTTCTCACATATATC-AC
* * * *
80141665 GAACTCAGACCAACTCAACGAGCTCTGA-TGCTTCACATATATCGC
1 GAACTTAGACCAACTCAACGAGCTCAGATTTC-TCACATATATCAC
* * **
80141710 GAACTTAGACCAACTCAACAAGTTTGGATTTCTCACATATATCAC
1 GAACTTAGACCAACTCAACGAGCTCAGATTTCTCACATATATCAC
80141755 GAACTT-GAACCAACTCAACGAGCTCAGATTTCT
1 GAACTTAG-ACCAACTCAACGAGCTCAGATTTCT
80141788 AAATTCCTAG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
44 30 0.29
45 69 0.68
46 3 0.03
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (45 bp):
GAACTTAGACCAACTCAACGAGCTCAGATTTCTCACATATATCAC
Found at i:80145733 original size:27 final size:27
Alignment explanation
Indices: 80145685--80145844 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
80145675 GCGAAGCTGC
* *
80145685 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
80145712 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
80145738 CAGATATATGTGGCTGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
80145765 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
80145792 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
80145819 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
80145845 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 83 0.73
28 19 0.17
29 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:80145775 original size:54 final size:54
Alignment explanation
Indices: 80145703--80145844 Score: 223
Period size: 54 Copynumber: 2.6 Consensus size: 54
80145693 GTGACGAAGT
* *
80145703 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCTGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
80145757 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
80145811 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
80145845 GACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.70
55 20 0.24
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:80153503 original size:45 final size:46
Alignment explanation
Indices: 80153355--80153526 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
80153345 GGTTAATTGT
* * ** **
80153355 GAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTTCAAGATGA
* * *
80153401 GATCCAGTGTAAGACCATGTCTGGGGCATGGCATCAGCATT-GAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-TTCAAGATGA
* *
80153449 GAGCTAGTGTAAGACATGT-TGGGACATGCATCGGCTTCAAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTTCAAGATG-A
**
80153495 -AGCCAGTGTAAGACATGTCTTAGACATGCATC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC
80153527 GGTAAGACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
44 2 0.02
45 29 0.28
46 31 0.30
47 17 0.17
48 24 0.23
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTTCAAGATGA
Found at i:80155531 original size:19 final size:20
Alignment explanation
Indices: 80155473--80155532 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
80155463 ACAACTAATC
*
80155473 GAAAAAGAAGAAAACGAAGGA
1 GAAAAAGAAGAAGA-GAAGGA
*
80155494 GAAGAAA-AATGGAGAAGAAGG-
1 GAA-AAAGAA-GAAG-AGAAGGA
80155515 GAAAAAGAAGAAGAGAAG
1 GAAAAAGAAGAAGAGAAG
80155533 TTTGCCAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
19 5 0.16
20 6 0.19
21 10 0.31
22 10 0.31
23 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.33, T:0.02
Consensus pattern (20 bp):
GAAAAAGAAGAAGAGAAGGA
Found at i:80157488 original size:36 final size:36
Alignment explanation
Indices: 80157444--80157516 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
80157434 ATAATGAGTA
80157444 TATTTTTTGGAGAAATCAACAGGAATATTATCCGAG
1 TATTTTTTGGAGAAATCAACAGGAATATTATCCGAG
80157480 TATTTTTTGGAGAAATCAACAGGAATATTATCCGAG
1 TATTTTTTGGAGAAATCAACAGGAATATTATCCGAG
80157516 T
1 T
80157517 TCTGTACTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (36 bp):
TATTTTTTGGAGAAATCAACAGGAATATTATCCGAG
Found at i:80158915 original size:46 final size:46
Alignment explanation
Indices: 80158862--80159089 Score: 296
Period size: 46 Copynumber: 5.0 Consensus size: 46
80158852 AGTGTGCTCT
80158862 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
80158908 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
80158954 CTGATAAGAATTGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
80159000 GTGATATGAAATGAACAAGACCATGATTAAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
80159046 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
80159090 TCATGTCAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:80164746 original size:16 final size:17
Alignment explanation
Indices: 80164722--80164759 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
80164712 ATATCTTGTT
80164722 TTTTC-AATCT-TTCTA
1 TTTTCAAATCTATTCTA
*
80164737 TTTTCAAATCTATTTTA
1 TTTTCAAATCTATTCTA
80164754 TTTTCA
1 TTTTCA
80164760 TTCTTACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 5 0.25
16 5 0.25
17 10 0.50
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTCAAATCTATTCTA
Found at i:80170364 original size:35 final size:37
Alignment explanation
Indices: 80170288--80170368 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 37
80170278 TATAAAATTT
80170288 AAAAAACGAAAATGAACAATAATGATTCTTTATAAAG
1 AAAAAACGAAAATGAACAATAATGATTCTTTATAAAG
* * *
80170325 AAAAAGACGAAAATGAATAATAAATG-TTCTTTACAAAA
1 AAAAA-ACGAAAATGAACAAT-AATGATTCTTTATAAAG
80170363 AAAAAA
1 AAAAAA
80170369 TAAAGAAGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
37 6 0.15
38 29 0.74
39 4 0.10
ACGTcount: A:0.60, C:0.07, G:0.10, T:0.22
Consensus pattern (37 bp):
AAAAAACGAAAATGAACAATAATGATTCTTTATAAAG
Found at i:80170377 original size:3 final size:3
Alignment explanation
Indices: 80170371--80170418 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
80170361 AAAAAAAATA
80170371 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA- AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
80170418 A
1 A
80170419 TATAGATGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 42 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:80179954 original size:12 final size:12
Alignment explanation
Indices: 80179937--80179961 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80179927 CATTTGGTAT
80179937 ATCAATACAAAA
1 ATCAATACAAAA
80179949 ATCAATACAAAA
1 ATCAATACAAAA
80179961 A
1 A
80179962 AAAAAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (12 bp):
ATCAATACAAAA
Found at i:80180811 original size:20 final size:23
Alignment explanation
Indices: 80180769--80180818 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 23
80180759 ATCTCAACAC
80180769 ATATAAAAAATATTAAGTGAATT
1 ATATAAAAAATATTAAGTGAATT
*
80180792 ATCTAAAAAA-A-TAA-TGAATT
1 ATATAAAAAATATTAAGTGAATT
80180812 ATATAAA
1 ATATAAA
80180819 TAGAAAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 12 0.48
21 3 0.12
22 1 0.04
23 9 0.36
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (23 bp):
ATATAAAAAATATTAAGTGAATT
Found at i:80182063 original size:13 final size:14
Alignment explanation
Indices: 80182045--80182073 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80182035 AGTTTATTAC
80182045 TTATTTTT-GTTTT
1 TTATTTTTGGTTTT
80182058 TTATTTTTGGTTTT
1 TTATTTTTGGTTTT
80182072 TT
1 TT
80182074 GGTTTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (14 bp):
TTATTTTTGGTTTT
Found at i:80182586 original size:13 final size:13
Alignment explanation
Indices: 80182553--80182591 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
80182543 GTGTTTTAGA
*
80182553 TATTTATGTTTTTT
1 TATTTAT-TTTTTC
*
80182567 TAATTATTTTTTC
1 TATTTATTTTTTC
80182580 TATTTATTTTTT
1 TATTTATTTTTT
80182592 ATCTTATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (13 bp):
TATTTATTTTTTC
Found at i:80193051 original size:25 final size:25
Alignment explanation
Indices: 80193006--80193082 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
80192996 CACAAATGCA
* *
80193006 GCTCTTTATG-AGTGTCCTGATATAG
1 GCTCTTTATGAACT-TCTTGATATAG
80193031 GCTCTTTATGAACTTCTTGATAT-G
1 GCTCTTTATGAACTTCTTGATATAG
** *
80193055 GCTCGCT-TGAACTTCTTGTTATATG
1 GCTCTTTATGAACTTCTTGATATA-G
80193080 GCT
1 GCT
80193083 ATCCAAAGCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
23 14 0.32
24 6 0.14
25 22 0.50
26 2 0.05
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (25 bp):
GCTCTTTATGAACTTCTTGATATAG
Found at i:80198173 original size:9 final size:9
Alignment explanation
Indices: 80198159--80198184 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80198149 TCCAAACCTC
80198159 TGAAATCAG
1 TGAAATCAG
80198168 TGAAATCAG
1 TGAAATCAG
80198177 TGAAATCA
1 TGAAATCA
80198185 ATGAGGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (9 bp):
TGAAATCAG
Found at i:80199666 original size:25 final size:25
Alignment explanation
Indices: 80199635--80199710 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 25
80199625 GCTTTTTGAT
**
80199635 TTAAGCTCTTATGAGCTTCCTATTA
1 TTAAGCTCACATGAGCTTCCTATTA
* ** * *
80199660 TTGAGCTCGGATAAGCTTCCTGTTA
1 TTAAGCTCACATGAGCTTCCTATTA
*
80199685 -TAAGCTCACATGAGCTTTCTATTA
1 TTAAGCTCACATGAGCTTCCTATTA
80199709 TT
1 TT
80199711 TGGCTTGGAA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
24 18 0.46
25 21 0.54
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.41
Consensus pattern (25 bp):
TTAAGCTCACATGAGCTTCCTATTA
Found at i:80199709 original size:24 final size:24
Alignment explanation
Indices: 80199612--80199709 Score: 72
Period size: 24 Copynumber: 4.0 Consensus size: 24
80199602 AGTTACCTGT
* **
80199612 TAAGCTCGCATGCGCTTTTTGATT-
1 TAAGCTCGCATGAGCTTCCT-ATTA
**
80199636 TAAGCTCTTATGAGCTTCCTATTA
1 TAAGCTCGCATGAGCTTCCTATTA
* * * *
80199660 TTGAGCTCGGATAAGCTTCCTGTTA
1 -TAAGCTCGCATGAGCTTCCTATTA
* *
80199685 TAAGCTCACATGAGCTTTCTATTA
1 TAAGCTCGCATGAGCTTCCTATTA
80199709 T
1 T
80199710 TTGGCTTGGA
Statistics
Matches: 56, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
23 3 0.05
24 34 0.61
25 19 0.34
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.40
Consensus pattern (24 bp):
TAAGCTCGCATGAGCTTCCTATTA
Found at i:80203242 original size:49 final size:50
Alignment explanation
Indices: 80203108--80203255 Score: 167
Period size: 50 Copynumber: 3.0 Consensus size: 50
80203098 ATGATCTATT
* * **
80203108 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
80203158 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-
1 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * * * *
80203208 GT-TGGTGCA-TTGTGTAGTACTAAGCGCAGACTACTATGCGTACCAGAT
1 GTGAGGT-CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
80203256 AGCTTCATCT
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.01
49 36 0.42
50 48 0.56
51 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (50 bp):
GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
Found at i:80206948 original size:42 final size:41
Alignment explanation
Indices: 80206889--80207041 Score: 139
Period size: 42 Copynumber: 3.7 Consensus size: 41
80206879 TGAGCTTACA
* *
80206889 TGTAAGACCATATCTGGGATATGGTATC-ATTATAAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATAAGAATT-G
* *
80206931 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGAATTG
1 TGTAAGACCATATCTGGGATATGGCATCGATATAAGAATTG
* * * * * * **
80206972 TGTAAGACCATAGCTAGGCTATTGACATTGATATGAG-ATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATAAGAAT--TG
80207015 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
80207042 TGGTATGATT
Statistics
Matches: 91, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 20 0.22
42 52 0.57
43 19 0.21
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATAAGAATTG
Found at i:80227485 original size:93 final size:93
Alignment explanation
Indices: 80227376--80227639 Score: 447
Period size: 93 Copynumber: 2.8 Consensus size: 93
80227366 CCCATAAGCA
* *
80227376 AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
**
80227441 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACACCTCACG
* * * *
80227469 AGCTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAT
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
80227534 GTGTTCGGATGCCTAGTTACACCTCACG
66 GAGTTCGGATGCCTAGTTACACCTCACG
80227562 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80227627 GAGTTCGGATGCC
66 GAGTTCGGATGCC
80227640 CAAATATCCG
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 157 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACACCTCACG
Found at i:80227489 original size:47 final size:45
Alignment explanation
Indices: 80227421--80227639 Score: 181
Period size: 47 Copynumber: 4.7 Consensus size: 45
80227411 ATCCATAAGT
80227421 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA--TCAC
* * * * * * * * *
80227468 GAGCTCGGACTCAACTCAACGAGTTCAGACG-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCA-C
* * *
80227514 GAACTTGGACTCAACTCAATGTGTTCGGATGCCTAGTTACACCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA--TCAC
* * * * * * *
80227561 GAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCA-C
80227607 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC
80227640 CAAATATCCG
Statistics
Matches: 131, Mismatches: 33, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
45 4 0.03
46 62 0.47
47 63 0.48
48 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCAC
Found at i:80227635 original size:46 final size:46
Alignment explanation
Indices: 80227367--80227635 Score: 253
Period size: 46 Copynumber: 5.8 Consensus size: 46
80227357 TGTAACCCGC
* * *
80227367 CCATAAGCAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
80227413 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * * *
80227459 ACATTTCA-CGAGCTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
80227506 CCATAAGTGAACTTGGACTCAACTCAATGTGTTCGGATGCCTAGTT-ACA-
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
*
80227555 CC-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
80227599 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
80227636 TGCCCAAATA
Statistics
Matches: 175, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 3 0.02
43 2 0.01
44 3 0.02
45 4 0.02
46 92 0.53
47 59 0.34
48 4 0.02
49 3 0.02
50 2 0.01
51 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:80230414 original size:15 final size:15
Alignment explanation
Indices: 80230366--80230434 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 15
80230356 TAAAGATAAC
*
80230366 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
* *
80230380 AAGAAATCCA-AGATT
1 AAGAAACCCAGA-ATA
* *
80230395 GAGAAACCCTGAATA
1 AAGAAACCCAGAATA
*
80230410 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
80230425 AAGAAACCCA
1 AAGAAACCCA
80230435 AGATACGATA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
14 9 0.21
15 32 0.76
16 1 0.02
ACGTcount: A:0.57, C:0.17, G:0.14, T:0.12
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:80230430 original size:30 final size:29
Alignment explanation
Indices: 80230366--80230433 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
80230356 TAAAGATAAC
* *
80230366 AAGAAAACCGAATAAAGAAATCCAAGATT
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
80230395 GAGAAACCCTGAATAAAGAAATCC-AGAATA
1 AAGAAACCC-GAATAAAGAAATCCAAG-ATA
80230425 AAGAAACCC
1 AAGAAACCC
80230434 AAGATACGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.56, C:0.18, G:0.15, T:0.12
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:80233511 original size:47 final size:47
Alignment explanation
Indices: 80233452--80233570 Score: 211
Period size: 47 Copynumber: 2.5 Consensus size: 47
80233442 ATCCATAAGT
* *
80233452 GAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
80233499 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
80233546 GAACTCGGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
80233571 TGGACATTCG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:80241583 original size:26 final size:26
Alignment explanation
Indices: 80241553--80241606 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
80241543 TTATGTGAAA
80241553 GCTTAATTCAATAGTTGCTAATGGCC
1 GCTTAATTCAATAGTTGCTAATGGCC
80241579 GCTTAATTCAATAGTTGCTAATGGCC
1 GCTTAATTCAATAGTTGCTAATGGCC
80241605 GC
1 GC
80241607 ATCAACAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
GCTTAATTCAATAGTTGCTAATGGCC
Found at i:80245820 original size:25 final size:24
Alignment explanation
Indices: 80245757--80245820 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
80245747 TATAAAATTC
* *
80245757 AAAATATTTTCAAAATAATTAATAT
1 AAAATATTTT-AAAATAATGAACAT
* *
80245782 AAATTATTTGTAAAATAGTGATACAT
1 AAAATATTT-TAAAATAATGA-ACAT
80245808 AAAATATTTTAAA
1 AAAATATTTTAAA
80245821 TTTTTAAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 20 0.62
26 12 0.38
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (24 bp):
AAAATATTTTAAAATAATGAACAT
Found at i:80245862 original size:31 final size:31
Alignment explanation
Indices: 80245806--80245922 Score: 121
Period size: 31 Copynumber: 3.8 Consensus size: 31
80245796 ATAGTGATAC
* *
80245806 ATAAAATAT-TTTAAAT-TTTTAAATATAATA
1 ATAAATTATATTTAAATAATTT-AATATAATA
*
80245836 ATAAATTATATTTAAATAATTTAATATAATG
1 ATAAATTATATTTAAATAATTTAATATAATA
* * *
80245867 ATCAATTCTATTTAAATAATCTAATATAATA
1 ATAAATTATATTTAAATAATTTAATATAATA
* * *
80245898 ATACATAAAATTTAAATTAATTTAA
1 ATAAATTATATTTAAA-TAATTTAA
80245923 GTTTTATATA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
30 8 0.11
31 53 0.75
32 10 0.14
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (31 bp):
ATAAATTATATTTAAATAATTTAATATAATA
Found at i:80261292 original size:26 final size:26
Alignment explanation
Indices: 80261257--80261307 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
80261247 ATGTGAAAAG
*
80261257 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
80261283 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
80261308 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:80261313 original size:104 final size:104
Alignment explanation
Indices: 80261178--80261444 Score: 439
Period size: 104 Copynumber: 2.6 Consensus size: 104
80261168 TTGTATATAA
** *
80261178 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
80261243 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
80261282 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
80261346 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
80261386 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
80261445 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
103 24 0.16
104 127 0.84
105 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:80269078 original size:106 final size:109
Alignment explanation
Indices: 80268881--80269103 Score: 275
Period size: 106 Copynumber: 2.1 Consensus size: 109
80268871 CTATGTGCTG
*
80268881 TCCACCATATCTTTGAATTGTGAAAAGGGGGTTGCCTATGCTGCTGATTCCCCGAGGGGTTGCTA
1 TCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCCTATGCTGCTGATTCCCCGAGGGGTTGCTA
* * ** *
80268946 AGTGCTGTTCCCCGGTTTCATTGGTC-GTG-CTAA-GTGCGGATA
66 AGTGCTGATCCCCGGATTCACCGGTCGGTGCCTAAGGTGC-GAGA
80268988 TCCACCATATCTTTGAAATGTG-AAAGGGGGTTG-CTATG-TGCTGATTTCCCCCGA-GGGTTGC
1 TCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCCTATGCTGCTGA-TT-CCCCGAGGGGTTG-
80269049 CT-AGTGCCTGATCCCC-GATTCAGCCGGTCGGTGCCTAAGGTGCGAGA
63 CTAAGTG-CTGATCCCCGGATTCA-CCGGTCGGTGCCTAAGGTGCGAGA
80269096 TCCACCAT
1 TCCACCAT
80269104 GAACGGTAAC
Statistics
Matches: 102, Mismatches: 6, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
104 6 0.06
105 22 0.22
106 31 0.30
107 24 0.24
108 15 0.15
109 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.28, T:0.29
Consensus pattern (109 bp):
TCCACCATATCTTTGAAATGTGAAAAGGGGGTTGCCTATGCTGCTGATTCCCCGAGGGGTTGCTA
AGTGCTGATCCCCGGATTCACCGGTCGGTGCCTAAGGTGCGAGA
Found at i:80271364 original size:21 final size:18
Alignment explanation
Indices: 80271317--80271367 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 18
80271307 TTATTACTTA
80271317 TTTATATATTATTTTCCT
1 TTTATATATTATTTTCCT
**
80271335 TAAAT-TATTATTTTACATCT
1 TTTATATATTATTTT-C--CT
80271355 TTTATATATTATT
1 TTTATATATTATT
80271368 ATATTCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 9 0.36
18 4 0.16
20 5 0.20
21 7 0.28
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATATATTATTTTCCT
Found at i:80271384 original size:15 final size:16
Alignment explanation
Indices: 80271358--80271387 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80271348 TACATCTTTT
80271358 ATATATTATTATATTC
1 ATATATTATTATATTC
80271374 ATATA-TATTATATT
1 ATATATTATTATATT
80271388 TATTAATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (16 bp):
ATATATTATTATATTC
Found at i:80283597 original size:83 final size:83
Alignment explanation
Indices: 80283495--80284121 Score: 1083
Period size: 83 Copynumber: 7.6 Consensus size: 83
80283485 AAAGCAGATC
* * * *
80283495 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACATATCGAGGACATAGCAAATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
*
80283560 AACGTTCTCAAATAGACT
66 AACGTTCTCAAACAGACT
*
80283578 CAAGATGATTTGGCATCCTTGTGCTTACAATGAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
80283643 AACGTTCTCAAACAGACT
66 AACGTTCTCAAACAGACT
80283661 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
* *
80283726 AATGTTCTCAAACAGATT
66 AACGTTCTCAAACAGACT
*
80283744 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
* *
80283809 AATGTCCTCAAACAGACT
66 AACGTTCTCAAACAGACT
* * * * *
80283827 CAAGATGGTTTGGCATCCTTGTGCCTACAAGGAACAAATCGAGGACATAGTAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
80283892 AACGTTCTCAAACAGACT
66 AACGTTCTCAAACAGACT
80283910 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
80283975 AACGTTCTCAAACAGACT
66 AACGTTCTCAAACAGACT
80283993 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
* *
80284058 AATGTTCTCAAACAGATT
66 AACGTTCTCAAACAGACT
*
80284076 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
1 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGAC
80284122 TGTGACAGCC
Statistics
Matches: 518, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 518 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (83 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACGTTGCAGATATGACTCTCA
AACGTTCTCAAACAGACT
Found at i:80285856 original size:27 final size:28
Alignment explanation
Indices: 80285772--80285869 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80285762 CATGAGATTG
* * * *
80285772 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80285801 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80285829 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80285856 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80285870 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80285880 original size:27 final size:27
Alignment explanation
Indices: 80285800--80285882 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80285790 TAAATTGTAC
* *
80285800 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80285828 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80285855 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80285882 A
1 A
80285883 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80285883 original size:29 final size:27
Alignment explanation
Indices: 80285772--80285883 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
80285762 CATGAGATTG
** * *
80285772 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
80285801 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80285829 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80285856 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
80285884 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80293933 original size:27 final size:28
Alignment explanation
Indices: 80293849--80293946 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
80293839 CATGAGATTG
* * * *
80293849 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
80293878 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
80293906 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
80293933 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
80293947 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:80293957 original size:27 final size:27
Alignment explanation
Indices: 80293877--80293959 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
80293867 TAAATTGTAC
* *
80293877 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
80293905 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
80293932 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
80293959 A
1 A
80293960 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:80293960 original size:29 final size:27
Alignment explanation
Indices: 80293849--80293960 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
80293839 CATGAGATTG
** * *
80293849 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
80293878 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
80293906 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
80293933 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
80293961 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:80297350 original size:17 final size:18
Alignment explanation
Indices: 80297319--80297356 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
80297309 ATTTTACATC
*
80297319 TTTTTATATATTATTATA
1 TTTTCATATATTATTATA
80297337 TTTTCATATA-TATTATA
1 TTTTCATATATTATTATA
80297354 TTT
1 TTT
80297357 ATTAATTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTCATATATTATTATA
Found at i:80297498 original size:20 final size:19
Alignment explanation
Indices: 80297451--80297498 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
80297441 ATATTATCTT
80297451 TATTATGTT-TTATTTTCA
1 TATTATGTTATTATTTTCA
* *
80297469 TATTAT-TTATTGTTTTTA
1 TATTATGTTATTATTTTCA
80297487 TATATATGTTAT
1 TAT-TATGTTAT
80297499 GTATATCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 3 0.12
20 4 0.16
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
TATTATGTTATTATTTTCA
Found at i:80303636 original size:111 final size:111
Alignment explanation
Indices: 80303438--80303640 Score: 307
Period size: 111 Copynumber: 1.8 Consensus size: 111
80303428 AATGACAAAT
* *
80303438 ATAAATAATTAAATTAGGGGTGCTTCTATGAACACAATAAACATTTATCATTTTTTACGCTGTAA
1 ATAAATAATTAAATTAAGGGTGCTTCTATCAACACAATAAACATTTATCATTTTTTACGCTGTAA
* *
80303503 TTAACTTAATTAGGTCAGAAAATTTTAACTACACCAAACGACGAAC
66 TTAAATTAATTAGGTCAAAAAATTTTAACTACACCAAACGACGAAC
* * ** * *
80303549 ATAAATAATTAAGTTAAGGGTGTTTCTATCAGTACAATAAACATTTGTCATTTTTTAGGCTGTAA
1 ATAAATAATTAAATTAAGGGTGCTTCTATCAACACAATAAACATTTATCATTTTTTACGCTGTAA
*
80303614 TTAAATTAATTAGGTTAAAAAATTTTA
66 TTAAATTAATTAGGTCAAAAAATTTTA
80303641 GCTATAAATA
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
111 81 1.00
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (111 bp):
ATAAATAATTAAATTAAGGGTGCTTCTATCAACACAATAAACATTTATCATTTTTTACGCTGTAA
TTAAATTAATTAGGTCAAAAAATTTTAACTACACCAAACGACGAAC
Found at i:80308796 original size:67 final size:65
Alignment explanation
Indices: 80308656--80308808 Score: 175
Period size: 67 Copynumber: 2.3 Consensus size: 65
80308646 CTAGCCATTT
* * *
80308656 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGAAACCACGCATACGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTG--CTACACATGAAACCACCCATACGACCTAGCTACA
80308721 TA
64 TA
* * *
80308723 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACACAT-AGTATCACCCATGCGACCTAGCTACAT
1 TATCTCGTAGCTCTCTTGTCTACATGGTGCTACACATGA-AACCACCCATACGACCTAGCTACAT
80308786 CAAA
65 ---A
*
80308790 TGTCTCGTAGCTCTCTTGT
1 TATCTCGTAGCTCTCTTGT
80308809 ACACATGATG
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
63 1 0.01
64 26 0.35
67 48 0.64
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.32
Consensus pattern (65 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGCTACACATGAAACCACCCATACGACCTAGCTACATA
Found at i:80308844 original size:67 final size:64
Alignment explanation
Indices: 80308656--80308853 Score: 168
Period size: 67 Copynumber: 3.0 Consensus size: 64
80308646 CTAGCCATTT
* * * * * *
80308656 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT-GAAACCACGCATACGACCTAGCTAC
1 TATCTCGTAGCTCTCTTGTCTACATGATG---TACACATAG-CACCACACATGCGACCTAGCTAC
80308720 ATA
62 ATA
* * * *
80308723 TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCA
1 TATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACAT--
80308788 AA
64 -A
* * * *
80308790 TGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACAT
1 TATCTCGTAGCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTACAT
80308853 A
64 A
80308854 CCATCTGTAT
Statistics
Matches: 111, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
64 27 0.24
65 1 0.01
66 1 0.01
67 81 0.73
68 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
TATCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATA
Found at i:80310858 original size:61 final size:61
Alignment explanation
Indices: 80310738--80310862 Score: 157
Period size: 61 Copynumber: 2.0 Consensus size: 61
80310728 AGAGAAATTG
* ** *
80310738 ACACGGCCTGGACTTCCTTAAACGGGTAGACCACACGCTCGTGTAGTTTTAGTAGACTCTA
1 ACACGGCCTAGACTTCCTTAAACGGGTAGACCACACGCTCGTGTAGTTTTAACAAACTCTA
*
80310799 ACACGGCCTAGACTTCCTTACACGGGTAGACCACACGC-C-TGT-GTCTATTCAACAAACTCTA
1 ACACGGCCTAGACTTCCTTAAACGGGTAGACCACACGCTCGTGTAGT-T-TT-AACAAACTCTA
80310860 ACA
1 ACA
80310863 TGGTTTGAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
58 2 0.04
59 4 0.07
60 3 0.05
61 47 0.84
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (61 bp):
ACACGGCCTAGACTTCCTTAAACGGGTAGACCACACGCTCGTGTAGTTTTAACAAACTCTA
Found at i:80312440 original size:15 final size:14
Alignment explanation
Indices: 80312422--80312524 Score: 72
Period size: 14 Copynumber: 7.2 Consensus size: 14
80312412 CTATTTAAAA
80312422 GTTTAGGGTTTATGG
1 GTTTAGGG-TTATGG
80312437 GTTTAGGGATTAT--
1 GTTTAGGG-TTATGG
*
80312450 GTTTATGGCTTAT-G
1 GTTTA-GGGTTATGG
*
80312464 GTTTAAGGGTT-GGG
1 GTTT-AGGGTTATGG
*
80312478 GTTTAAAGGTTATGG
1 GTTT-AGGGTTATGG
*
80312493 G-TTAGTGGTTAGGG
1 GTTTAG-GGTTATGG
80312507 GTTTATGGGTTATGG
1 GTTTA-GGGTTATGG
80312522 GTT
1 GTT
80312525 AATGGTTTAG
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
13 10 0.14
14 31 0.44
15 29 0.41
16 1 0.01
ACGTcount: A:0.17, C:0.01, G:0.39, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTATGG
Found at i:80312508 original size:29 final size:29
Alignment explanation
Indices: 80312459--80312539 Score: 101
Period size: 29 Copynumber: 2.8 Consensus size: 29
80312449 TGTTTATGGC
* *
80312459 TTATGGTTTAAGGGTT-GGGGTTTAAAGG
1 TTATGGGTTAATGGTTAGGGGTTTAAAGG
* **
80312487 TTATGGGTTAGTGGTTAGGGGTTTATGGG
1 TTATGGGTTAATGGTTAGGGGTTTAAAGG
80312516 TTATGGGTTAATGGTTTAGGGGTT
1 TTATGGGTTAATGG-TTAGGGGTT
80312540 AATGCTTAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 13 0.29
29 23 0.51
30 9 0.20
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.42
Consensus pattern (29 bp):
TTATGGGTTAATGGTTAGGGGTTTAAAGG
Found at i:80312512 original size:22 final size:21
Alignment explanation
Indices: 80312487--80312554 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
80312477 GGTTTAAAGG
80312487 TTATGGGTTAGTGGTTAGGGGT
1 TTATGGGTTA-TGGTTAGGGGT
**
80312509 TTATGGGTTATGGGTTAATGGT
1 TTATGGGTTAT-GGTTAGGGGT
* *
80312531 TTAGGGGTTAATGCTTAGGGGT
1 TTATGGGTT-ATGGTTAGGGGT
80312553 TT
1 TT
80312555 TTATTTTGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
21 1 0.03
22 35 0.92
23 2 0.05
ACGTcount: A:0.16, C:0.01, G:0.40, T:0.43
Consensus pattern (21 bp):
TTATGGGTTATGGTTAGGGGT
Found at i:80312529 original size:15 final size:15
Alignment explanation
Indices: 80312485--80312553 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
80312475 GGGGTTTAAA
* *
80312485 GGTTATGGGTTAGT-
1 GGTTAGGGGTTAATG
*
80312499 GGTTAGGGGTTTATG
1 GGTTAGGGGTTAATG
*
80312514 GGTTATGGGTTAATG
1 GGTTAGGGGTTAATG
*
80312529 GTTTAGGGGTTAAT-
1 GGTTAGGGGTTAATG
*
80312543 GCTTAGGGGTT
1 GGTTAGGGGTT
80312554 TTTATTTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
14 21 0.46
15 25 0.54
ACGTcount: A:0.16, C:0.01, G:0.42, T:0.41
Consensus pattern (15 bp):
GGTTAGGGGTTAATG
Found at i:80312691 original size:100 final size:100
Alignment explanation
Indices: 80312555--80312896 Score: 279
Period size: 100 Copynumber: 3.4 Consensus size: 100
80312545 TTAGGGGTTT
* * * * *
80312555 TTATTTTGTGGTTTAAGGTTTAGGGGATACATTTTAGGGTACTTTAGTAGGGGATATAGTTTAAT
1 TTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAAT
*
80312620 GGTTTAAGGTTTAGGGTATTGATTAATTATTGTTA
66 GGTTTAAGGTTTAGGGTATTGATTAATTAGTGTTA
* * * **** * **
80312655 TTATTTTGTGGTTTAAGGATCAAGAGATATAGTTTAGGGT--TATGATTAATTCATACA-TTTTG
1 TTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGTACT-TTAGTAGGGGATATAGTTTAA
* *
80312717 TGG-TTAAGGCTTAGGGGTTATTG-TT--TT-GTGGT-
65 TGGTTTAAGGTTTA-GGG-TATTGATTAATTAGTGTTA
* * * * *
80312749 TTATGGTTAGGGGATATAGTTCAGGGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGGGATAT
1 TTAT--TTTGTGG---T--TT-AAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGGGATAT
* *
80312814 AGTTTAATGGTTTAAGGTTTAGAGCATTGATTAATTAGTGTTA
58 AGTTTAATGGTTTAAGGTTTAGGGTATTGATTAATTAGTGTTA
* *
80312857 TTATTTTATGGTTTAAGGATCAAGGGATATAGTTTTGGGT
1 TTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGT
80312897 TATGATTAAT
Statistics
Matches: 178, Mismatches: 44, Indels: 40
0.68 0.17 0.15
Matches are distributed among these distances:
94 4 0.02
95 3 0.02
96 7 0.04
97 9 0.05
98 12 0.07
99 14 0.08
100 56 0.31
101 4 0.02
102 22 0.12
103 13 0.07
104 11 0.06
105 9 0.05
106 6 0.03
107 4 0.02
108 4 0.02
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (100 bp):
TTATTTTGTGGTTTAAGGATCAAGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAAT
GGTTTAAGGTTTAGGGTATTGATTAATTAGTGTTA
Found at i:80312804 original size:202 final size:202
Alignment explanation
Indices: 80312571--80313059 Score: 802
Period size: 202 Copynumber: 2.4 Consensus size: 202
80312561 TGTGGTTTAA
* * *
80312571 GGTTTAGGGGATACATTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGGG
1 GGTTTAGGGGATATACTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAG
* *
80312636 TATTGATTAATTATTGTTATTATTTTGTGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGAT
66 TATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGAT
80312701 TAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATAT
131 TAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATAT
80312766 AGTTCAG
196 AGTTCAG
* *
80312773 GGTTTAAGGGATATAGTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAG
1 GGTTTAGGGGATATACTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAG
* * *
80312838 CATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGGGATATAGTTTTGGGTTATGAT
66 TATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGAT
*
80312903 TAATTCATATATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATAT
131 TAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATAT
*
80312968 AGTTTAG
196 AGTTCAG
* *
80312975 GGTTTAGGGGATATACTTTAGGGT--TTAAGGTTATAGGGATATAGTTTAATGGTTTAAGGTTTA
1 GGTTTAGGGGATATACTTTAGGGTACTTTA-G-TA-GGGGATATAGTTTAATGGTTTAAGGTTTA
*
80313038 GAGTTTTGATTAATTAGTGTTA
63 GAGTATTGATTAATTAGTGTTA
80313060 ATAATATTAA
Statistics
Matches: 267, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
200 3 0.01
201 1 0.00
202 215 0.81
203 48 0.18
ACGTcount: A:0.25, C:0.03, G:0.28, T:0.44
Consensus pattern (202 bp):
GGTTTAGGGGATATACTTTAGGGTACTTTAGTAGGGGATATAGTTTAATGGTTTAAGGTTTAGAG
TATTGATTAATTAGTGTTATTATTTTATGGTTTAAGGATCAAGAGATATAGTTTAGGGTTATGAT
TAATTCATACATTTTGTGGTTAAGGCTTAGGGGTTATTGTTTTGTGGTTTATGGTTAGGGGATAT
AGTTCAG
Found at i:80312960 original size:28 final size:29
Alignment explanation
Indices: 80312909--80312980 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
80312899 TGATTAATTC
80312909 ATATA-TTTTGTGG-TTAAGGCTTAGGGG
1 ATATAGTTTTGTGGTTTAAGGCTTAGGGG
* * *
80312936 TTATTGTTTTGTGGTTTATGG-TTAGGGG
1 ATATAGTTTTGTGGTTTAAGGCTTAGGGG
*
80312964 ATATAGTTTAG-GGTTTA
1 ATATAGTTTTGTGGTTTA
80312981 GGGGATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
27 9 0.24
28 23 0.62
29 5 0.14
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (29 bp):
ATATAGTTTTGTGGTTTAAGGCTTAGGGG
Found at i:80312983 original size:21 final size:21
Alignment explanation
Indices: 80312949--80313001 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
80312939 TTGTTTTGTG
*
80312949 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
80312969 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
*
80312990 CTTTAGGGTTTA
1 GTTTAGGGTTTA
80313002 AGGTTATAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.23, C:0.02, G:0.34, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGATATA
Found at i:80313006 original size:28 final size:29
Alignment explanation
Indices: 80312969--80313038 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
80312959 AGGGGATATA
*
80312969 GTTTAGGGTTTAGGGGATATACTTT-AGG
1 GTTTAAGGTTTAGGGGATATACTTTAAGG
* *
80312997 GTTTAAGGTTATA-GGGATATAGTTTAATG
1 GTTTAAGGTT-TAGGGGATATACTTTAAGG
80313026 GTTTAAGGTTTAG
1 GTTTAAGGTTTAG
80313039 AGTTTTGATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 22 0.61
29 14 0.39
ACGTcount: A:0.26, C:0.01, G:0.31, T:0.41
Consensus pattern (29 bp):
GTTTAAGGTTTAGGGGATATACTTTAAGG
Found at i:80316237 original size:14 final size:13
Alignment explanation
Indices: 80316214--80316243 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
80316204 ATTACTATAA
80316214 TAATTATATGAAG
1 TAATTATATGAAG
80316227 TAATATATATGAAG
1 TAAT-TATATGAAG
80316241 TAA
1 TAA
80316244 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:80320689 original size:40 final size:40
Alignment explanation
Indices: 80320603--80320826 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
80320593 TATTCGGATG
*
80320603 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * *
80320644 ATATCCGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80320684 ATATCCGGGCTAAGACCCGAAGGTATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
80320725 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
80320765 ATATCCGGGCTAAGTCCCAAAGGTATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
80320805 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
80320827 TACTTCGGTT
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.08
40 88 0.55
41 60 0.37
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80320739 original size:81 final size:80
Alignment explanation
Indices: 80320602--80320826 Score: 310
Period size: 81 Copynumber: 2.8 Consensus size: 80
80320592 TTATTCGGAT
*
80320602 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGTA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
*
80320667 CATTTGCGCTAGTGAC
65 CATTTGCGCGAGTGAC
*
80320683 GATATCCGGGCTAAGACCCGAAGGTATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGTA-TTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
* *
80320748 CATTTGTGCGAGTTAC
65 CATTTGCGCGAGTGAC
* * * * * *
80320764 TATATCCGGGCTAAGTCCCAAAGGTATTTGTGCGATTTG-CTATATCC-GGTTAAATCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGTATTTGTGCTA-GTGACTATATCCGGGTTAAGTCCCGAAGG
80320827 TACTTCGGTT
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 14 0.11
80 16 0.12
81 100 0.77
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGTATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGGC
ATTTGCGCGAGTGAC
Found at i:80328867 original size:81 final size:80
Alignment explanation
Indices: 80328729--80328923 Score: 302
Period size: 81 Copynumber: 2.4 Consensus size: 80
80328719 TTATTCGGAT
80328729 GATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCTGGGTCAAGTCCCGAAGG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCTGGGTCAAGTCCCGAAGG
*
80328794 CATTTGCGCTAGTGAC
65 CATTTGCGCGAGTGAC
80328810 GATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACTATATCTGGG-CTAAGTCCCGAAG
1 GATATCCGGGCTAAGACCCGAAGGCA-TTTGTGCTAGTGACTATATCTGGGTC-AAGTCCCGAAG
* *
80328874 GCATTTGTGCGAGTTAC
64 GCATTTGCGCGAGTGAC
* * *
80328891 TATATCTGGGCTAAGTCCCGAAGGCATTTGTGC
1 GATATCCGGGCTAAGACCCGAAGGCATTTGTGC
80328924 GATTTGCTAT
Statistics
Matches: 106, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 8 0.08
81 98 0.92
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCTGGGTCAAGTCCCGAAGGC
ATTTGCGCGAGTGAC
Found at i:80328936 original size:40 final size:40
Alignment explanation
Indices: 80328730--80328923 Score: 282
Period size: 40 Copynumber: 4.8 Consensus size: 40
80328720 TATTCGGATG
* *
80328730 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCTGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
80328771 ATATCTGGG-TCAAGTCCCGAAGGCATTTGCGCTAGTGACG
1 ATATCTGGGCT-AAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
80328811 ATATCCGGGCTAAGACCCGAAGGCATTTTGTGCTAGTGACT
1 ATATCTGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
80328852 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
80328892 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGC
1 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGC
80328924 GATTTGCTAT
Statistics
Matches: 138, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
40 80 0.58
41 58 0.42
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:80334638 original size:86 final size:87
Alignment explanation
Indices: 80334445--80334658 Score: 270
Period size: 86 Copynumber: 2.5 Consensus size: 87
80334435 TTAGCGATGT
* * * * *
80334445 TTTCCAAAAAAACGCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTCCCCAACAAACGCCGCTAA
1 TTTCCCAACAAACGCCGCTAAAAGCCACGACTTTTAGCGGCGCTTTCCCCAAAAAACGCCGCTAA
* *
80334510 AAGACATGACTTTTAGCAGTGC
66 AAGACATGACTTTTAGCAGCGA
* * *
80334532 TTTCCCAACAAACGCTGCTAAAAGCCACGACTTTTAGCGGCGCTTT-CCCAAAAAATGCTGCTAA
1 TTTCCCAACAAACGCCGCTAAAAGCCACGACTTTTAGCGGCGCTTTCCCCAAAAAACGCCGCTAA
* * *
80334596 AAGTCGTGGCTTTTAGCAGCGA
66 AAGACATGACTTTTAGCAGCGA
***
80334618 TTTTTTAACAAACGCCGCTAAAAGCCACGAC-TTTAGCGGCG
1 TTTCCCAACAAACGCCGCTAAAAGCCACGACTTTTAGCGGCG
80334659 TTTTTTTTTA
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 10 0.09
86 59 0.54
87 41 0.37
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (87 bp):
TTTCCCAACAAACGCCGCTAAAAGCCACGACTTTTAGCGGCGCTTTCCCCAAAAAACGCCGCTAA
AAGACATGACTTTTAGCAGCGA
Found at i:80334666 original size:43 final size:43
Alignment explanation
Indices: 80334445--80334658 Score: 232
Period size: 43 Copynumber: 5.0 Consensus size: 43
80334435 TTAGCGATGT
* * *
80334445 TTTCCAAAAAAACGCCGCTAAAAGCCATGACTTTTAGCGGTGC
1 TTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGC
* * *
80334488 TTTCCCCAACAAACGCCGCTAAAAGACATGACTTTTAGCAGTGC
1 TTT-CCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGC
* *
80334532 TTTCCCAACAAACGCTGCTAAAAGCCACGACTTTTAGCGGCGC
1 TTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGC
* * * * * * * *
80334575 TTTCCCAAAAAATGCTGCTAAAAGTCGTGGCTTTTAGCAGCGA
1 TTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGC
*** *
80334618 TTTTTTAACAAACGCCGCTAAAAGCCACGAC-TTTAGCGGCG
1 TTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCG
80334659 TTTTTTTTTA
Statistics
Matches: 142, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
42 9 0.06
43 94 0.66
44 39 0.27
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
TTTCCCAACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGC
Found at i:80341995 original size:30 final size:30
Alignment explanation
Indices: 80341961--80342021 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80341951 TCCTTAACTC
80341961 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80341991 AAACTTTTGTATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80342021 A
1 A
80342022 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80355340 original size:48 final size:46
Alignment explanation
Indices: 80355249--80355517 Score: 159
Period size: 47 Copynumber: 5.7 Consensus size: 46
80355239 AGAGTTGTCT
* * *
80355249 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATAAATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA--CACAGATGAGAGCC
* * *
80355297 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACACAGATGAGAGCC
** * *
80355345 AAAGTAAGACATGTCTGGGACATGCATCGGTCTCAACAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ACAGATGAGAGCC
* * * ** * * ** *
80355392 AGTGTAAGACGTGTCAGGGATACACATCGGC-TA-AGA-GTTGTTCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATG-AGAGCC
** ** * * *
80355436 AGTGTAAGACATGTCTAAGACATGCATCAACATGCATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCA--CACAGATGAGAGCC
*
80355484 AGTCTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
80355518 ATATATTCCA
Statistics
Matches: 165, Mismatches: 44, Indels: 22
0.71 0.19 0.10
Matches are distributed among these distances:
43 4 0.02
44 24 0.15
46 8 0.05
47 44 0.27
48 44 0.27
49 26 0.16
50 15 0.09
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATGAGAGCC
Found at i:80355362 original size:96 final size:93
Alignment explanation
Indices: 80355252--80355518 Score: 240
Period size: 91 Copynumber: 2.9 Consensus size: 93
80355242 GTTGTCTAGT
80355252 GTAAGACATGTCTGGGACATGCATCAGCACGCATAAATGAGAGCCAGTGTAAGACCATGTCTAGG
1 GTAAGACATGTCTGGGACATGCATCAGCACGCATAAATGAGAGCCAGTGTAAGACCATGTCTAGG
80355317 ACATGGCATCGGCACAGAGATGAGTGCCAAA
66 ACATGGCATCGGCA-AGAG-T-AGTGCCAAA
** * * *
80355348 GTAAGACATGTCTGGGACATGCATC-GGTCTCA-ACAGA-GATAGCCAGTGTAAGA-CGTGTC-A
1 GTAAGACATGTCTGGGACATGCATCAGCACGCATA-A-ATGAGAGCCAGTGTAAGACCATGTCTA
* ** * * * **
80355408 GG-GATACACATCGGCTAAGAGTTGTTCTAGT
64 GGACAT-GGCATCGGC-AAGAGTAGTGCCAAA
** * * * * * *
80355439 GTAAGACATGTCTAAGACATGCATCAACATGCATATATGAGAGCTAGTCTAAGACCATGTCTGGG
1 GTAAGACATGTCTGGGACATGCATCAGCACGCATAAATGAGAGCCAGTGTAAGACCATGTCTAGG
80355504 ACATGGCATCGGCAA
66 ACATGGCATCGGCAA
80355519 TATATTCCAT
Statistics
Matches: 132, Mismatches: 29, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
91 28 0.21
92 18 0.14
93 22 0.17
94 16 0.12
95 22 0.17
96 26 0.20
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (93 bp):
GTAAGACATGTCTGGGACATGCATCAGCACGCATAAATGAGAGCCAGTGTAAGACCATGTCTAGG
ACATGGCATCGGCAAGAGTAGTGCCAAA
Found at i:80357363 original size:16 final size:17
Alignment explanation
Indices: 80357336--80357370 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
80357326 AGGGTTAGGG
*
80357336 TTTAATGGTTTAGGGTT
1 TTTAATGGTTTAGGATT
80357353 TTTAA-GGTTTAGGATT
1 TTTAATGGTTTAGGATT
80357369 TT
1 TT
80357371 AGTATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (17 bp):
TTTAATGGTTTAGGATT
Found at i:80357577 original size:16 final size:17
Alignment explanation
Indices: 80357558--80357591 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
80357548 TAATTTAATT
80357558 AAAAACCCT-AACCCTA
1 AAAAACCCTAAACCCTA
*
80357574 AAAAACCTTAAACCCTA
1 AAAAACCCTAAACCCTA
80357591 A
1 A
80357592 TTTAATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAAACCCTAAACCCTA
Found at i:80363954 original size:13 final size:13
Alignment explanation
Indices: 80363936--80363966 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
80363926 CATCATTATG
80363936 TAATATATATGCA
1 TAATATATATGCA
80363949 TAATATATATGCA
1 TAATATATATGCA
80363962 TAATA
1 TAATA
80363967 CACTTCATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (13 bp):
TAATATATATGCA
Found at i:80364446 original size:28 final size:29
Alignment explanation
Indices: 80364396--80364471 Score: 79
Period size: 28 Copynumber: 2.7 Consensus size: 29
80364386 TAAGTTCGCA
*
80364396 CACTTAGTGCTTAATAATCAAACTCAC-T
1 CACTTAGTGCTTAACAATCAAACTCACAT
* *
80364424 CACTTAGTGC-TATACAATTAAACTCGCAT
1 CACTTAGTGCTTA-ACAATCAAACTCACAT
*
80364453 -ACTTAGTGCTGAA-AATCAA
1 CACTTAGTGCTTAACAATCAA
80364472 CAACTCAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 7 0.17
28 31 0.77
29 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (29 bp):
CACTTAGTGCTTAACAATCAAACTCACAT
Found at i:80366986 original size:30 final size:30
Alignment explanation
Indices: 80366952--80367019 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
80366942 AAAATGTTGT
80366952 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
80366982 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
80367012 GGGAGAAA
1 GGGAGAAA
80367020 CAAAAGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (30 bp):
GGGAGAAATAATAAAATACTAGTTGATGGG
Found at i:80369594 original size:48 final size:48
Alignment explanation
Indices: 80369532--80369860 Score: 595
Period size: 48 Copynumber: 6.9 Consensus size: 48
80369522 TATATATGTG
* * *
80369532 TGTGGTAAAGCCGAATAGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
80369580 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
80369628 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
80369676 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
80369724 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
80369772 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
80369820 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
80369861 GTGTGTATAT
Statistics
Matches: 273, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 273 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:80370055 original size:37 final size:37
Alignment explanation
Indices: 80370005--80370103 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
80369995 ATATATTCCA
80370005 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
80370042 GGTAAGACCCGATGACTATGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
80370079 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
80370104 GGACTATTCG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:80373131 original size:46 final size:46
Alignment explanation
Indices: 80373078--80373344 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 46
80373068 TTTGGGCATA
80373078 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * *
80373124 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TC
* * *
80373171 CGAGCTCGTTGACTTGAGTCTGAGTTCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* * * *
80373217 CGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TC
* * * * *
80373264 TGAGCTCATTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
* *
80373310 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80373345 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 27, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
45 6 0.03
46 86 0.49
47 50 0.28
48 6 0.03
50 8 0.05
51 6 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC
Found at i:80373196 original size:47 final size:47
Alignment explanation
Indices: 80373122--80373283 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
80373112 GATGCGAACG
*
80373122 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCA
* * * * *
80373169 TCCGAGCTCGTTGACTTGAGTCTGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCA
80373215 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCA
* * *
80373262 TCTGAGCTCATTGAGTTGAGTC
1 TCCGAACTCGTTGAGTTGAGTC
80373284 CGAATTCACT
Statistics
Matches: 92, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.29
47 45 0.49
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCA
Found at i:80373196 original size:93 final size:93
Alignment explanation
Indices: 80373072--80373337 Score: 442
Period size: 93 Copynumber: 2.9 Consensus size: 93
80373062 CGGATATTTG
* *
80373072 GGCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
80373137 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
80373165 GGCATCCGAGCTCGTTGACTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
80373230 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
80373258 GGCATCTGAGCTCATTGAGTTGAGTCCGAATTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
80373323 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
80373338 CTTATGGGCG
Statistics
Matches: 160, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 160 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:80378060 original size:29 final size:29
Alignment explanation
Indices: 80378017--80378118 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
80378007 ATCATGAAAT
80378017 TAGCACTAAGTGTGCGGGTTCAAATTGTA
1 TAGCACTAAGTGTGCGGGTTCAAATTGTA
* *
80378046 TAGCACTAAGCGTGCGGGTTCAAGTTGTA
1 TAGCACTAAGTGTGCGGGTTCAAATTGTA
* * *
80378075 TAGCACTAAGTGTGCGAGTTC-GATT-AA
1 TAGCACTAAGTGTGCGGGTTCAAATTGTA
*
80378102 TAACACTAAGTGTGCGG
1 TAGCACTAAGTGTGCGG
80378119 ACTTACTATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 16 0.25
28 2 0.03
29 46 0.72
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
TAGCACTAAGTGTGCGGGTTCAAATTGTA
Found at i:80388144 original size:28 final size:28
Alignment explanation
Indices: 80388091--80388159 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
80388081 CGATAAGGTC
*
80388091 GCACACTTAGTGCTTAATAATCAAACTA
1 GCACACTTAGTGCTTAACAATCAAACTA
* *
80388119 GCACACTTAGTGC-TATACAATTAAACTC
1 GCACACTTAGTGCTTA-ACAATCAAACTA
* *
80388147 GAATACTTAGTGC
1 GCACACTTAGTGC
80388160 CGAAAATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCTTAACAATCAAACTA
Found at i:80393600 original size:43 final size:43
Alignment explanation
Indices: 80393517--80394076 Score: 444
Period size: 43 Copynumber: 13.0 Consensus size: 43
80393507 TCGATGTAAT
* * * * * *
80393517 TATACTGACACACACAATGCATCATCTA-ATATATCGAAGTATC
1 TATACTGGCACATACAGTGCATCATC-AGATAAACCAAAGTATC
*
80393560 TATATTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * ** *
80393603 TATATTGGCACATATAGTGCATCATC-GAATATACTGAAGTAAC
1 TATACTGGCACATACAGTGCATCATCAG-ATAAACCAAAGTATC
* * * * * * * *
80393646 TATCCGGGCACACACAGTGCATAACCGGATAAATCAGAGTATC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * **
80393689 TATACTGGCACATATAGTTCATCATCGGATAAACTGAAGTATC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * * ** *
80393732 TTTATTGCCACATACAGTGCATCATCAGATATACTGAAGTAAC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * *
80393775 TATAGTGGCACAAACAATGCATCATCAGATAAACCAAAGTATC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * *
80393818 TATACCGACACACACAGTGCATAATCAGATAAACCAAAGTATC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * * *
80393861 TATACTGGCACATGCAGTGAATCATCAGATATACCGAAGTAAC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * * ** * *
80393904 TATACTGGCACATACAATGTATCATCGGATAAATCAATTTTTT
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * * * * * *
80393947 TCTACTGGCACATATATTGCATCATCGGATATATCGAAGTAAC
1 TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
* * * *
80393990 TATACTAGCACACACATTGCATCATC-GAATAAACCAAAATATC
1 TATACTGGCACATACAGTGCATCATCAG-ATAAACCAAAGTATC
* * *
80394033 TACACAGGCACATACAGTGCATCATC-GAATAAACCAAAATATC
1 TATACTGGCACATACAGTGCATCATCAG-ATAAACCAAAGTATC
80394076 T
1 T
80394077 CAAATCACAT
Statistics
Matches: 408, Mismatches: 105, Indels: 8
0.78 0.20 0.02
Matches are distributed among these distances:
42 3 0.01
43 404 0.99
44 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.26
Consensus pattern (43 bp):
TATACTGGCACATACAGTGCATCATCAGATAAACCAAAGTATC
Found at i:80393687 original size:129 final size:128
Alignment explanation
Indices: 80393525--80394015 Score: 498
Period size: 129 Copynumber: 3.8 Consensus size: 128
80393515 ATTATACTGA
* ** * * *
80393525 CACACACAATGCATCATCTAATATATCGAAGTATCTATATTGGCACATACAGTGCATCATCAGAT
1 CACAAACAATGCATCATCGGATAAATCAAAGTATCTATACTGGCACATACAGTGCATCATCAGAT
*
80393590 AAACCAAAGTATCTATATTGGCACATATAGTGCATCATC-GAATATACTGAAGTAACTATCCGGG
66 AAACCAAAGTATCTATATTGGCACATACAGTGCATCATCAG-ATATACTGAAGTAACTAT-CGGG
* * * * * * * *
80393654 CACACACAGTGCATAACCGGATAAATCAGAGTATCTATACTGGCACATATAGTTCATCATCGGAT
1 CACAAACAATGCATCATCGGATAAATCAAAGTATCTATACTGGCACATACAGTGCATCATCAGAT
** * * *
80393719 AAACTGAAGTATCTTTATTGCCACATACAGTGCATCATCAGATATACTGAAGTAACTATAGTGG
66 AAACCAAAGTATCTATATTGGCACATACAGTGCATCATCAGATATACTGAAGTAACTATCG-GG
* * * * * *
80393783 CACAAACAATGCATCATCAGATAAACCAAAGTATCTATACCGACACACACAGTGCATAATCAGAT
1 CACAAACAATGCATCATCGGATAAATCAAAGTATCTATACTGGCACATACAGTGCATCATCAGAT
* * * * *
80393848 AAACCAAAGTATCTATACTGGCACATGCAGTGAATCATCAGATATACCGAAGTAACTATACTGG
66 AAACCAAAGTATCTATATTGGCACATACAGTGCATCATCAGATATACTGAAGTAACTAT-CGGG
* * ** * * * * * *
80393912 CACATACAATGTATCATCGGATAAATCAATTTTTTTCTACTGGCACATATATTGCATCATCGGAT
1 CACAAACAATGCATCATCGGATAAATCAAAGTATCTATACTGGCACATACAGTGCATCATCAGAT
* * * * * * * *
80393977 ATATCGAAGTAACTATACTAGCACACACATTGCATCATC
66 AAACCAAAGTATCTATATTGGCACATACAGTGCATCATC
80394016 GAATAAACCA
Statistics
Matches: 292, Mismatches: 67, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
128 1 0.00
129 290 0.99
130 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (128 bp):
CACAAACAATGCATCATCGGATAAATCAAAGTATCTATACTGGCACATACAGTGCATCATCAGAT
AAACCAAAGTATCTATATTGGCACATACAGTGCATCATCAGATATACTGAAGTAACTATCGGG
Found at i:80406685 original size:19 final size:20
Alignment explanation
Indices: 80406661--80406713 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
80406651 CCCAAATTTT
*
80406661 TTGTTTAAAGGTTG-TAAAA
1 TTGTTTAAAGGTTGAGAAAA
* *
80406680 TTGTTTCAAGTTTGAGAAAA
1 TTGTTTAAAGGTTGAGAAAA
*
80406700 TTGGTTTAATGGTT
1 TT-GTTTAAAGGTT
80406714 AAAAAAATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
19 12 0.46
20 6 0.23
21 8 0.31
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (20 bp):
TTGTTTAAAGGTTGAGAAAA
Found at i:80412822 original size:21 final size:24
Alignment explanation
Indices: 80412780--80412825 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 24
80412770 AAATATTATT
*
80412780 ACAATTTATAAAAAATTATTAAAA
1 ACAATTTATAAAAAAGTATTAAAA
80412804 ACAA-TTA-AAAAAAGT-TTAAAA
1 ACAATTTATAAAAAAGTATTAAAA
80412825 A
1 A
80412826 TATATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 7 0.33
23 3 0.14
24 4 0.19
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.28
Consensus pattern (24 bp):
ACAATTTATAAAAAAGTATTAAAA
Found at i:80415981 original size:6 final size:6
Alignment explanation
Indices: 80415969--80416020 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
80415959 ATGTCGGCAG
* * * *
80415969 TCAGAT ACAGAT ACGGAT TCAGAT TCAGAT TCAGAT TCAGAT CCTAGAT
1 TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TCAGAT TC-AGAT
80416018 TCA
1 TCA
80416021 AATAACAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 34 0.87
7 5 0.13
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (6 bp):
TCAGAT
Found at i:80418936 original size:39 final size:39
Alignment explanation
Indices: 80418882--80418957 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
80418872 AGGTTCCCAC
80418882 GTGGCTAACTCAGCACCATGATTCCGCCGCAGAACCTAT
1 GTGGCTAACTCAGCACCATGATTCCGCCGCAGAACCTAT
* *
80418921 GTGGCTACCTCAGCACCATGATTCTGCCGCAGAACCT
1 GTGGCTAACTCAGCACCATGATTCCGCCGCAGAACCT
80418958 TTACAAAAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (39 bp):
GTGGCTAACTCAGCACCATGATTCCGCCGCAGAACCTAT
Found at i:80424720 original size:42 final size:42
Alignment explanation
Indices: 80424600--80424753 Score: 186
Period size: 42 Copynumber: 3.6 Consensus size: 42
80424590 TACCATACCA
**
80424600 ATGCCATATCCTAGATATGGTCTTACATGTAA-TCTCGCATCG
1 ATGCCATATCCTAGATATGGTCTTACATG-AAGTCTCATATCG
* * * *
80424642 ATGCCAATAACCAAGCA-ATGGTCTTACACGATGTCTCATATCG
1 ATGCC-ATATCCTAG-ATATGGTCTTACATGAAGTCTCATATCG
80424685 ATGCCATATCCTAGATATGGTCTTACATGAAGTCTCATATCG
1 ATGCCATATCCTAGATATGGTCTTACATGAAGTCTCATATCG
* * *
80424727 ATACCCTATCCGAGATATGGTCTTACA
1 ATGCCATATCCTAGATATGGTCTTACA
80424754 AGTAATCTCA
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 61 0.64
43 32 0.34
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:80430603 original size:90 final size:89
Alignment explanation
Indices: 80430450--80430627 Score: 216
Period size: 90 Copynumber: 2.0 Consensus size: 89
80430440 AGTAAAATGC
* * * *
80430450 CAACGCCATATCCCATATATGGTCTTACATAGGATCACAACTCGATGCCAATGCTATGTCCCAGA
1 CAACGCCATATCCCAGATATGGTCTTA-ATAGGATCACAACTCGAAGCCAATGCCATATCCCAGA
*
80430515 CATGGTCTTACATAGGATCTCATAT
65 CATGGTCTTACACAGGATCTCATAT
* *
80430540 CAACGCCATATCCCAGATATGGTCTT-ATATGATAACACATAC-CGAAGCCGATGCCATATCCCA
1 CAACGCCATATCCCAGATATGGTCTTAATAGGAT--CACA-ACTCGAAGCCAATGCCATATCCCA
** *
80430603 GATGTGGTCTTATACAGGATCTCAT
63 GACATGGTCTTACACAGGATCTCAT
80430628 CACCCCAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
88 6 0.08
90 67 0.89
91 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (89 bp):
CAACGCCATATCCCAGATATGGTCTTAATAGGATCACAACTCGAAGCCAATGCCATATCCCAGAC
ATGGTCTTACACAGGATCTCATAT
Found at i:80433210 original size:13 final size:13
Alignment explanation
Indices: 80433180--80433223 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
80433170 GATACGAATT
*
80433180 CAGATTCAAAT-C
1 CAGATTCAAATAA
*
80433192 CAAGATTCAGATAA
1 C-AGATTCAAATAA
80433206 CAGATTCAAATAA
1 CAGATTCAAATAA
80433219 CAGAT
1 CAGAT
80433224 ATGCAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 1 0.04
13 25 0.93
14 1 0.04
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (13 bp):
CAGATTCAAATAA
Found at i:80435088 original size:20 final size:20
Alignment explanation
Indices: 80435040--80435092 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
80435030 TAATTTTTTT
*
80435040 CATGCGAACCCTAAGTTAGA
1 CATGCGAACCCTAAGTTAAA
*
80435060 CATGGGAACCCT-AGATTAAA
1 CATGCGAACCCTAAG-TTAAA
*
80435080 TATGCGAACCCTA
1 CATGCGAACCCTA
80435093 TATATGTTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (20 bp):
CATGCGAACCCTAAGTTAAA
Found at i:80435140 original size:22 final size:22
Alignment explanation
Indices: 80435115--80435157 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
80435105 GTGACTTCTA
*
80435115 TATATATGTTATATGCAAACCC
1 TATATATGATATATGCAAACCC
80435137 TATATATGATATATGCAAACC
1 TATATATGATATATGCAAACC
80435158 ACTGTACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (22 bp):
TATATATGATATATGCAAACCC
Found at i:80435735 original size:12 final size:13
Alignment explanation
Indices: 80435706--80435735 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
80435696 GACGGGTGTG
80435706 AAATTAAAACATT
1 AAATTAAAACATT
80435719 AAATTAAAACA-T
1 AAATTAAAACATT
80435731 AAATT
1 AAATT
80435736 TTCATTTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATTAAAACATT
Found at i:80446359 original size:9 final size:9
Alignment explanation
Indices: 80446345--80446403 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
80446335 TTTATACAAA
80446345 TAATTCGGT
1 TAATTCGGT
*
80446354 TAATTCGGG
1 TAATTCGGT
*
80446363 TAATTTGGT
1 TAATTCGGT
*
80446372 TAATTCGAT
1 TAATTCGGT
*
80446381 TAATTCGAT
1 TAATTCGGT
*
80446390 TAATTCAGT
1 TAATTCGGT
80446399 TAATT
1 TAATT
80446404 TTATACTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:80449151 original size:30 final size:30
Alignment explanation
Indices: 80449117--80449176 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
80449107 TTGGGTTTTT
*
80449117 GCCACCAAAATTTACTTATAATGCATTCTA
1 GCCACCAAAATCTACTTATAATGCATTCTA
80449147 GCCACCAAAATCTACTTATAATGCATTCTA
1 GCCACCAAAATCTACTTATAATGCATTCTA
80449177 AATCCAAACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (30 bp):
GCCACCAAAATCTACTTATAATGCATTCTA
Found at i:80453043 original size:132 final size:132
Alignment explanation
Indices: 80452800--80453047 Score: 331
Period size: 132 Copynumber: 1.9 Consensus size: 132
80452790 TTGGAAAACG
* * * * * *
80452800 TGAATGAAATTCCAAAGGGATATTCGATTATTTTGCACAAACGAGAAATTGCAACCCAGCACGAT
1 TGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTGCAACCCAGCACGAC
* ** * * *
80452865 AGGGCACGATTCCCCGAATTGTCGAATGTCGAACATTTCCTTCGTTTTAAAATTTTTTTAGAAAA
66 AGGGCACGATTCCCCGAATTGTCAAACATCAAACATGTCCTCCGTTTTAAAATTTTTTTAGAAAA
80452930 TA
131 TA
*
80452932 TGAACGAAATTCTAAAGAGACATCCGATTATTTTG-AGCAAACAAGAAATTGCAACCCAGCACGA
1 TGAACGAAATTCCAAAGAGACATCCGATTATTTTGCA-CAAACAAGAAATTGCAACCCAGCACGA
80452996 CAGGGCACGATTCCCCGAATTG-CTAAACATCAAACATCGT-CTCCGTTTTAAA
65 CAGGGCACGATTCCCCGAATTGTC-AAACATCAAACAT-GTCCTCCGTTTTAAA
80453048 GAATTTTTAA
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
131 2 0.02
132 97 0.97
133 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (132 bp):
TGAACGAAATTCCAAAGAGACATCCGATTATTTTGCACAAACAAGAAATTGCAACCCAGCACGAC
AGGGCACGATTCCCCGAATTGTCAAACATCAAACATGTCCTCCGTTTTAAAATTTTTTTAGAAAA
TA
Found at i:80453757 original size:37 final size:35
Alignment explanation
Indices: 80453684--80453761 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
80453674 ATGCATAACA
80453684 ATAAAAATGTAATATTAAAAGATATATACACGTAAT
1 ATAAAAATGTAATATTAAAAGATATATACAC-TAAT
80453720 ATAAAAATGTACCCATATTGAAAA-ATATATACA-TAAT
1 ATAAAAATGTA---ATATT-AAAAGATATATACACTAAT
80453757 A-AAAA
1 ATAAAA
80453762 TGCAATCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
36 15 0.39
37 5 0.13
39 14 0.37
40 4 0.11
ACGTcount: A:0.58, C:0.08, G:0.06, T:0.28
Consensus pattern (35 bp):
ATAAAAATGTAATATTAAAAGATATATACACTAAT
Found at i:80459536 original size:9 final size:8
Alignment explanation
Indices: 80459491--80459535 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
80459481 AAAGAAAATA
80459491 TTTTT-AT
1 TTTTTAAT
80459498 TTTTTAAT
1 TTTTTAAT
**
80459506 TTTAAAGAT
1 TTTTTA-AT
80459515 TTTTTAAT
1 TTTTTAAT
80459523 TTTTTAAT
1 TTTTTAAT
80459531 TTTTT
1 TTTTT
80459536 TTTATCTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
7 5 0.16
8 21 0.66
9 6 0.19
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (8 bp):
TTTTTAAT
Found at i:80462267 original size:43 final size:42
Alignment explanation
Indices: 80462212--80462309 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 42
80462202 AAACCCTTTT
* *
80462212 AAAATTTA-AAAATTATTTTAAAAAAATCATAAAATTACAAA
1 AAAATTTATAAAATGAATTTAAAAAAATCATAAAATTACAAA
* ** *
80462253 CAAAATTTATAAAATGAATTTATAAAAATTTTAAAATTATAAA
1 -AAAATTTATAAAATGAATTTAAAAAAATCATAAAATTACAAA
*
80462296 AAATTTTATTAAAA
1 AAAATTTA-TAAAA
80462310 ATAACAATCC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
42 15 0.32
43 32 0.68
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (42 bp):
AAAATTTATAAAATGAATTTAAAAAAATCATAAAATTACAAA
Found at i:80462309 original size:30 final size:30
Alignment explanation
Indices: 80462254--80462311 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
80462244 AATTACAAAC
80462254 AAAATTTATAAAATGAATTTATAAAAATTTT
1 AAAATTTATAAAA-GAATTTATAAAAATTTT
80462285 AAAA-TTATAAAA-AATTTTATTAAAAAT
1 AAAATTTATAAAAGAA-TTTA-TAAAAAT
80462312 AACAATCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 2 0.08
29 4 0.16
30 15 0.60
31 4 0.16
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (30 bp):
AAAATTTATAAAAGAATTTATAAAAATTTT
Found at i:80467596 original size:5 final size:5
Alignment explanation
Indices: 80467586--80467614 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80467576 ATGTATGGAT
80467586 TTATA TTATA TTATA TTATA TTATA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTAT
80467615 GCAGCTGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:80469294 original size:20 final size:21
Alignment explanation
Indices: 80469269--80469309 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
80469259 TGCGTTTAGC
80469269 ATCATCAT-TGTGATCAAATT
1 ATCATCATATGTGATCAAATT
80469289 ATCATCATAGTGTGATCAAAT
1 ATCATCATA-TGTGATCAAAT
80469310 CAATAATGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (21 bp):
ATCATCATATGTGATCAAATT
Found at i:80473383 original size:39 final size:39
Alignment explanation
Indices: 80473339--80473493 Score: 220
Period size: 39 Copynumber: 3.9 Consensus size: 39
80473329 CACCAACACA
* *
80473339 AAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
80473378 AAGCCTGCGGACCTTAAGTCCAGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
80473417 AAGCCTGCAGACCTTAAGTCCGGATACAATTCCAGCACA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
80473456 AAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCA
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
80473494 TATAGCCTGC
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 80 0.77
40 24 0.23
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:80473488 original size:40 final size:40
Alignment explanation
Indices: 80473335--80473522 Score: 211
Period size: 39 Copynumber: 4.8 Consensus size: 40
80473325 CAATCACCAA
* *
80473335 CACAAAGCCTACGGAT-CTTAAGTCCGGATACAATTCCAG
1 CACAAAGCCTGCGGGTCCTTAAGTCCGGATACAATTCCAG
* * *
80473374 CACGAAGCCTGC-GGACCTTAAGTCCAGATACAATTCCAG
1 CACAAAGCCTGCGGGTCCTTAAGTCCGGATACAATTCCAG
* * *
80473413 CACGAAGCCTGC-AGACCTTAAGTCCGGATACAATTCCAG
1 CACAAAGCCTGCGGGTCCTTAAGTCCGGATACAATTCCAG
* * *
80473452 CACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
1 CACAAAGCCTGCGGGTCCTTAAGTCCGGATACAATTCCAG
* * * **
80473492 CATATAGCCTGCGGGTCTTTAAACCCGGATA
1 CACAAAGCCTGCGGGTCCTTAAGTCCGGATA
80473523 TACATCAAAG
Statistics
Matches: 131, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 1 0.01
39 80 0.61
40 50 0.38
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CACAAAGCCTGCGGGTCCTTAAGTCCGGATACAATTCCAG
Found at i:80477163 original size:13 final size:14
Alignment explanation
Indices: 80477143--80477180 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
80477133 TTAAAAGAAT
*
80477143 GAATGAGGAATGAG
1 GAATGAGGGATGAG
80477157 G-ATGAGGGATGAG
1 GAATGAGGGATGAG
*
80477170 GGATGAGGGAT
1 GAATGAGGGAT
80477181 CATTAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.50, T:0.16
Consensus pattern (14 bp):
GAATGAGGGATGAG
Found at i:80477178 original size:7 final size:7
Alignment explanation
Indices: 80477145--80477180 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
80477135 AAAAGAATGA
*
80477145 ATGAGGA
1 ATGAGGG
80477152 ATGA-GG
1 ATGAGGG
80477158 ATGAGGG
1 ATGAGGG
80477165 ATGAGGG
1 ATGAGGG
80477172 ATGAGGG
1 ATGAGGG
80477179 AT
1 AT
80477181 CATTAGAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (7 bp):
ATGAGGG
Found at i:80485066 original size:16 final size:15
Alignment explanation
Indices: 80485033--80485079 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
80485023 AGATGATAAT
80485033 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
80485049 TATTCATTATAATATA
1 TATTAATTATAAT-TA
*
80485065 TATTAATTATTATTA
1 TATTAATTATAATTA
80485080 ACTTTATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:80485079 original size:22 final size:23
Alignment explanation
Indices: 80485031--80485080 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
80485021 AAAGATGATA
80485031 ATTATTAATATATAATTATATTC
1 ATTATTAATATATAATTATATTC
80485054 ATTA-TAATATAT-ATTA-ATT-
1 ATTATTAATATATAATTATATTC
80485073 ATTATTAA
1 ATTATTAA
80485081 CTTTATATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 4 0.15
20 6 0.23
21 4 0.15
22 8 0.31
23 4 0.15
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTATTAATATATAATTATATTC
Found at i:80501866 original size:40 final size:40
Alignment explanation
Indices: 80501790--80501971 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
80501780 AACCCAAGTA
* * * * *
80501790 CCTTCGGGATTTAG-CCGAATATAG-CAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
*
80501829 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* *
80501869 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
80501909 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
80501949 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80501972 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Done.