Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 238 of 362
Found at i:80501910 original size:80 final size:80
Alignment explanation
Indices: 80501790--80501971 Score: 296
Period size: 80 Copynumber: 2.3 Consensus size: 80
80501780 AACCCAAGTA
* * * * *
80501790 CCTTCGGGATTTAG-CCGAATATAGCAACTCGTACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
80501854 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
80501869 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
80501933 GTCAATAGCACAAAAG
65 GTCAATAGCACAAAAG
80501949 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80501972 CATTCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 13 0.14
80 82 0.85
81 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:80509903 original size:40 final size:40
Alignment explanation
Indices: 80509829--80510010 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
80509819 AACCCAAGTA
* * * *
80509829 CCTTCAGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
* * *
80509868 CCTTCGGGTCTTAGCCCGGTTATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
*
80509908 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
80509948 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
*
80509988 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80510011 CATTCGAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 11 0.09
40 116 0.91
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
Found at i:80509961 original size:80 final size:80
Alignment explanation
Indices: 80509829--80510010 Score: 287
Period size: 80 Copynumber: 2.3 Consensus size: 80
80509819 AACCCAAGTA
* * * *
80509829 CCTTCAGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGTTATAG
1 CCTTCAGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
80509893 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
80509908 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCAGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
80509972 GTCACTAGCACAAAAG
65 GTCAATAGCACAAAAG
80509988 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCAGGACTTAGCCCGGATAT
80510011 CATTCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
79 12 0.13
80 81 0.86
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCAGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:80526797 original size:37 final size:37
Alignment explanation
Indices: 80526691--80526799 Score: 200
Period size: 37 Copynumber: 2.9 Consensus size: 37
80526681 AGCTCAGACG
*
80526691 AAATCTCCACACGTAGTCATCGGGTCTCACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
80526728 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
*
80526765 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
80526800 ATATATTTCC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.20
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
Found at i:80527004 original size:50 final size:50
Alignment explanation
Indices: 80526950--80527046 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 50
80526940 ATCGCCTACG
*
80526950 TATTTCACACTAG-CCATTTGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * * *
80527000 TATTTCACATTGATCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
80527047 TCATCACATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
49 2 0.05
50 39 0.95
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:80527103 original size:47 final size:47
Alignment explanation
Indices: 80527004--80527196 Score: 246
Period size: 47 Copynumber: 4.1 Consensus size: 47
80526994 TATATATATT
** * * * *
80527004 TCACATTGATCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
80527050 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
80527097 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * **
80527144 TCACATTGGCCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
80527191 TCACAT
1 TCACAT
80527197 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 19 0.14
47 105 0.78
48 10 0.07
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:80527124 original size:22 final size:22
Alignment explanation
Indices: 80527049--80527167 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
80527039 TCTCATATTC
80527049 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
80527071 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
80527095 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
80527118 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
80527142 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80527165 ATC
1 ATC
80527168 TCATATATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80531135 original size:40 final size:40
Alignment explanation
Indices: 80531085--80531444 Score: 523
Period size: 40 Copynumber: 9.1 Consensus size: 40
80531075 CGAATACACG
* * * *
80531085 TCACCAGCACGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * *
80531125 ACACCAGCACGAATGCTCTTCGGG-TTTAG-CCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80531163 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80531203 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
80531243 TCACTAGCACGAATGCTCTT--GGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
80531281 TCACTAGCACGAATGCTCTT-GGGACTTAGTCCAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
80531320 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
80531360 TCACTAGCACGAATTCTGTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80531400 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
80531440 TCACT
1 TCACT
80531445 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 27, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
38 67 0.23
39 43 0.15
40 179 0.62
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:80531185 original size:78 final size:80
Alignment explanation
Indices: 80531085--80531444 Score: 559
Period size: 78 Copynumber: 4.6 Consensus size: 80
80531075 CGAATACACG
* * * * *
80531085 TCACCAGCACGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
* *
80531149 TTTAG-CCGGATATA
66 CTTAGTCCGGATACA
* *
80531163 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
80531228 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
*
80531243 TCACTAGCACGAATGCTCTT--GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTT-GGGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
*
80531305 CTTAGTCCAGATACA
66 CTTAGTCCGGATACA
* * *
80531320 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAATTCTGTTCGGGA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
80531385 CTTAGTCCGGATACA
66 CTTAGTCCGGATACA
80531400 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
80531445 CTCAATTCTC
Statistics
Matches: 260, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
77 38 0.15
78 94 0.36
79 38 0.15
80 90 0.35
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
CTTAGTCCGGATACA
Found at i:80531339 original size:157 final size:157
Alignment explanation
Indices: 80531085--80531444 Score: 546
Period size: 157 Copynumber: 2.3 Consensus size: 157
80531075 CGAATACACG
* * * * * *
80531085 TCACCAGCACGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGT
1 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGC
* *
80531150 TTAGCCGGATATATCACTAGCACGAATGCTCTTCG-GAACTTAGCCCGGATACATCACTAGCACG
65 TTAGCCAGATACATCACTAGCACGAATGCTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACG
80531214 AATGCTCTTCGGGACTTAGTCCGGATACA
129 AATGCTCTTCGGGACTTAGTCCGGATACA
*
80531243 TCACTAGCACGAATGCTCTT-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTT-GGGAC
1 TCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGG-C
*
80531306 TTAGTCCAGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACG
65 TTAG-CCAGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACG
* *
80531371 AATTCTGTTCGGGACTTAGTCCGGATACA
129 AATGCTCTTCGGGACTTAGTCCGGATACA
80531400 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATATCACT
80531445 CTCAATTCTC
Statistics
Matches: 184, Mismatches: 13, Indels: 9
0.89 0.06 0.04
Matches are distributed among these distances:
155 3 0.02
156 38 0.21
157 102 0.55
158 19 0.10
159 22 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (157 bp):
TCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGCT
TAGCCAGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
TGCTCTTCGGGACTTAGTCCGGATACA
Found at i:80532777 original size:37 final size:37
Alignment explanation
Indices: 80532706--80532848 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
80532696 AGCTCAGACG
* *
80532706 AAATCTCCACACGAAGTTATC-GGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80532742 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80532779 AAATCTCCACACGTAGTCATCGGGTC-TACCCGGAC-
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80532814 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80532849 ATATATTTCC
Statistics
Matches: 103, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
35 26 0.25
36 36 0.35
37 41 0.40
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80532843 original size:72 final size:73
Alignment explanation
Indices: 80532706--80532848 Score: 245
Period size: 72 Copynumber: 2.0 Consensus size: 73
80532696 AGCTCAGACG
*
80532706 AAATCTCCACACGAAGTTATCGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 AAATCTCCACACGAAGTCATCGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
80532771 CCCGGACA
66 CCCGGACA
*
80532779 AAATCTCCACACGTAGTCATCGGGTC-TACCCGGAC-AAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGAAGTCATC-GGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
80532842 ACCCGGA
65 ACCCGGA
80532849 ATATATTTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
72 35 0.52
73 28 0.42
74 4 0.06
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (73 bp):
AAATCTCCACACGAAGTCATCGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
CCCGGACA
Found at i:80533053 original size:50 final size:50
Alignment explanation
Indices: 80532999--80533095 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
80532989 ATCGCCTACG
80532999 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
80533049 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
80533096 TCATCACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:80533152 original size:47 final size:46
Alignment explanation
Indices: 80533053--80533198 Score: 168
Period size: 47 Copynumber: 3.1 Consensus size: 46
80533043 TATATATATT
* * ** *
80533053 TCACATTGACCATTCGGCTTTA-CCACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCATATATGCATA-CTCACATTCA
* *
80533099 TCACATTGGCCATTCGGCCTTATCACATTTATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CATATATGCATACTCACATTCA
* * *
80533146 TCACATTGGTCATTCGGCCTTATCTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CATATATGCATACTCACATTCA
80533193 TCACAT
1 TCACAT
80533199 AAAATCCTAA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 20 0.23
47 57 0.66
48 9 0.10
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCATATATGCATACTCACATTCA
Found at i:80537163 original size:40 final size:40
Alignment explanation
Indices: 80537117--80537478 Score: 532
Period size: 40 Copynumber: 9.1 Consensus size: 40
80537107 CGAATACACG
* * * *
80537117 TCACCAGCACGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** * *
80537157 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80537197 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80537237 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
**
80537277 TCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
80537317 TCACTAGCACGAATGCTCTTCGGGACTTAGTCCAGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80537357 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80537397 TCACTAGCACGAATGCTCTTC-GGACTTAG-TCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
80537435 TCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
80537474 TCACT
1 TCACT
80537479 CTCAATTCTC
Statistics
Matches: 292, Mismatches: 29, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
38 36 0.12
39 20 0.07
40 236 0.81
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:80538803 original size:37 final size:37
Alignment explanation
Indices: 80538744--80538852 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
80538734 AGCTCAGACG
* *
80538744 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
80538781 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
80538818 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
80538853 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:80539057 original size:50 final size:50
Alignment explanation
Indices: 80539003--80539099 Score: 144
Period size: 50 Copynumber: 1.9 Consensus size: 50
80538993 ATCGCCTACG
80539003 TATTTCACACTAG-CCATTCGGCTTTACCACA-TATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCA-AGTATACATATCTCATATATA
* *
80539053 TATTTCACATTGACCATTCGGCTTTACCAAGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCAAGTATACATATCTCATAT
80539100 TCATCACATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
49 3 0.07
50 40 0.93
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCAAGTATACATATCTCATATATA
Found at i:80539156 original size:47 final size:47
Alignment explanation
Indices: 80539057--80539249 Score: 248
Period size: 47 Copynumber: 4.1 Consensus size: 47
80539047 TATATATATT
* * * *
80539057 TCACATTGACCATTCGGCTTTA-C-CA-AGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATA-TATGCAT-GCTCACATTCA
*
80539103 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
80539150 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
* ** * **
80539197 TCACATTGGCCATTTGGCCTTATTTCATATATACATATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
80539244 TCACAT
1 TCACAT
80539250 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
46 20 0.15
47 103 0.77
48 9 0.07
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCA
Found at i:80539177 original size:22 final size:22
Alignment explanation
Indices: 80539102--80539177 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
80539092 TCTCATATTC
80539102 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
80539124 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
80539148 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
80539171 ATCACAT
1 ATCACAT
80539178 ATATGCATGC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:80543341 original size:35 final size:35
Alignment explanation
Indices: 80543292--80543359 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
80543282 ACCCTCGAAA
* * *
80543292 GACACGGGCGTGTGAGCTGCCCTTGTGGCAAGGTT
1 GACACGGGCATGTGAGCTACCATTGTGGCAAGGTT
80543327 GACACGGGCATGTGAGCTACCATTGTGGCAAGG
1 GACACGGGCATGTGAGCTACCATTGTGGCAAGG
80543360 CTTAGGCCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.19, C:0.22, G:0.38, T:0.21
Consensus pattern (35 bp):
GACACGGGCATGTGAGCTACCATTGTGGCAAGGTT
Found at i:80544367 original size:13 final size:13
Alignment explanation
Indices: 80544349--80544375 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80544339 GCTCGGTAGG
80544349 GACACGCCCGTGT
1 GACACGCCCGTGT
80544362 GACACGCCCGTGT
1 GACACGCCCGTGT
80544375 G
1 G
80544376 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:80546495 original size:14 final size:13
Alignment explanation
Indices: 80546473--80546509 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
80546463 GTCTTAAAAT
80546473 AAAATAAAAGTAA
1 AAAATAAAAGTAA
80546486 AAACATAAAA-TAA
1 AAA-ATAAAAGTAA
80546499 AAAATAAAAGT
1 AAAATAAAAGT
80546510 TTTTAAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.27
13 10 0.45
14 6 0.27
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (13 bp):
AAAATAAAAGTAA
Found at i:80550626 original size:28 final size:27
Alignment explanation
Indices: 80550533--80550626 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 27
80550523 AACTGGTCCT
* *
80550533 TAGCCCATATCAATATTAATCTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCC
* *
80550560 ATAGCCCCTTAT-AGTATCAGAGTATATTGGGCC
1 -TAG-CCCATATCAGTATC--A--AT-CTGGGCC
80550593 TAGCCCATATCAGTATCAATCTGGGCC
1 TAGCCCATATCAGTATCAATCTGGGCC
80550620 GTAGCCC
1 -TAGCCC
80550627 TATTACAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
27 6 0.12
28 15 0.29
29 6 0.12
30 2 0.04
31 6 0.12
32 11 0.21
33 6 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (27 bp):
TAGCCCATATCAGTATCAATCTGGGCC
Found at i:80550646 original size:60 final size:61
Alignment explanation
Indices: 80550530--80550662 Score: 166
Period size: 60 Copynumber: 2.2 Consensus size: 61
80550520 GCTAACTGGT
* * * *
80550530 CCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTATAGTATCAGAGTATATTGGG
1 CCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAATATCAGAGTATATTGGG
* *
80550591 CC-TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAT-TC-GAGATATATTGGG
1 CCTTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAATATCAGAG-TATATTGGG
80550651 CCTTA-CCCATAT
1 CCTTAGCCCATAT
80550663 TAACATAGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.81
61 9 0.14
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (61 bp):
CCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAATATCAGAGTATATTGGG
Found at i:80551336 original size:8 final size:8
Alignment explanation
Indices: 80551323--80551349 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
80551313 CTTTCTGGCA
80551323 TTTCGGCT
1 TTTCGGCT
80551331 TTTCGGCT
1 TTTCGGCT
80551339 TTTCGGCT
1 TTTCGGCT
80551347 TTT
1 TTT
80551350 GCCGATCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:80557884 original size:31 final size:31
Alignment explanation
Indices: 80557844--80557919 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
80557834 CCAACCTCAG
*
80557844 CACATGGGCGTGTGTGACCACACAGCCTACA
1 CACACGGGCGTGTGTGACCACACAGCCTACA
80557875 CACACGGGCGTGTGTGACCACACAGCCTACA
1 CACACGGGCGTGTGTGACCACACAGCCTACA
80557906 CACACGGGCGTGTG
1 CACACGGGCGTGTG
80557920 ATCCTGCTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.14
Consensus pattern (31 bp):
CACACGGGCGTGTGTGACCACACAGCCTACA
Found at i:80571314 original size:26 final size:26
Alignment explanation
Indices: 80571233--80571314 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
80571223 TGATACAAAT
80571233 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80571259 TGAAAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80571285 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80571311 TGAT
1 TGAT
80571315 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80574621 original size:48 final size:48
Alignment explanation
Indices: 80574550--80574935 Score: 682
Period size: 48 Copynumber: 8.0 Consensus size: 48
80574540 CAAGATAAAT
* * *
80574550 ATATATATGTGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80574598 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80574646 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80574694 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATTAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80574742 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80574790 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80574838 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80574886 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80574934 AT
1 AT
80574936 GTGTGTATAT
Statistics
Matches: 325, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 325 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:80575128 original size:37 final size:37
Alignment explanation
Indices: 80575078--80575180 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
80575068 ATGAATATAT
80575078 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80575115 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80575152 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
80575181 GGACTATTCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80576528 original size:40 final size:40
Alignment explanation
Indices: 80576473--80576799 Score: 600
Period size: 40 Copynumber: 8.2 Consensus size: 40
80576463 ATATAAATCT
*
80576473 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGAATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
80576513 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGAATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
80576553 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
80576593 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
80576633 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
80576673 GGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
*
80576713 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATGTATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
* *
80576753 GGGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATATATCC
1 GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
80576793 GGGCTAA
1 GGGCTAA
80576800 ACCTCGAAGG
Statistics
Matches: 280, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 280 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCC
Found at i:80576871 original size:28 final size:27
Alignment explanation
Indices: 80576831--80576987 Score: 143
Period size: 28 Copynumber: 5.6 Consensus size: 27
80576821 GAGTTATGAG
* * *
80576831 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
80576859 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
80576887 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
80576916 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
80576944 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
*
80576973 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
80576988 AATCAGTCAG
Statistics
Matches: 104, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
28 57 0.55
29 47 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:80576894 original size:29 final size:28
Alignment explanation
Indices: 80576859--80576987 Score: 118
Period size: 29 Copynumber: 4.5 Consensus size: 28
80576849 CTTCAACCGA
* *
80576859 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
80576888 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
80576916 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
80576945 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
80576973 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
80576988 AATCAGTCAG
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
28 37 0.45
29 45 0.55
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:80576917 original size:57 final size:57
Alignment explanation
Indices: 80576827--80577015 Score: 247
Period size: 57 Copynumber: 3.3 Consensus size: 57
80576817 GCTGGAGTTA
* * * *
80576827 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
** *
80576884 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
80576941 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
80576998 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
80577016 AGTGTGTTTC
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
56 14 0.12
57 101 0.87
58 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:80579942 original size:48 final size:48
Alignment explanation
Indices: 80579805--80580190 Score: 625
Period size: 48 Copynumber: 8.0 Consensus size: 48
80579795 CAAGATAAAT
* * *
80579805 ATATATATGTGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
80579853 ATATGTATAT-TGGTAAAG-CGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80579899 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80579947 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATATTAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG--TATGAG
*
80579997 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80580045 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
80580093 AGATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATTATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA-TGTATGAG
* *
80580141 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
80580189 AT
1 AT
80580191 GTGTGTATAT
Statistics
Matches: 317, Mismatches: 15, Indels: 12
0.92 0.04 0.03
Matches are distributed among these distances:
46 37 0.12
47 39 0.12
48 171 0.54
49 23 0.07
50 47 0.15
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:80580163 original size:96 final size:96
Alignment explanation
Indices: 80579814--80580192 Score: 633
Period size: 98 Copynumber: 4.0 Consensus size: 96
80579804 TATATATATG
*
80579814 TGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT-TGGTAAAG-CGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
80579877 GCTAGTGTGAAATATGTATGAGATATGTATA
66 GCTAGTGTGAAATATGTATGAGAGATGTATA
80579908 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
80579973 GCTAGTGTGAAATATGTATATTAGATATGTATA
66 GCTAGTGTGAAATATG--TATGAGAGATGTATA
*
80580006 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
80580071 GCTAATGTGAAATATGTATGAGAGATGTATA
66 GCTAGTGTGAAATATGTATGAGAGATGTATA
*
80580102 TGTGGT-AAGCCGAATGGCTAATGTGAAATATTATATGAGATATGTATATGTGGTAAAGCCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATA-TGTATGAGATATGTATATGTGGTAAAGCCGAAT
80580166 GGCTAGTGTGAAATATGTA-G-GAGATGT
65 GGCTAGTGTGAAATATGTATGAGAGATGT
80580193 GTGTATATTG
Statistics
Matches: 271, Mismatches: 9, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
94 55 0.20
95 32 0.12
96 91 0.34
98 93 0.34
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (96 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAGTGTGAAATATGTATGAGAGATGTATA
Found at i:80580200 original size:146 final size:145
Alignment explanation
Indices: 80579814--80580190 Score: 663
Period size: 146 Copynumber: 2.6 Consensus size: 145
80579804 TATATATATG
* *
80579814 TGTGGTAAATCCGAATGGCTAATGTGAAATA-TGTATGAGATATGTATAT-TGGTAAAG-CGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATTATATGAGATATGTATATGTGGTAAAGCCGAAT
80579876 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
66 GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
*
80579941 TATGAGATATGTATA
131 TATGAGAGATGTATA
* *
80579956 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATATTAGATATGTATATGTGGTAAAGCCGAA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATAT-TATATGAGATATGTATATGTGGTAAAGCCGAA
80580021 TGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
65 TGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
80580086 GTATGAGAGATGTATA
130 GTATGAGAGATGTATA
80580102 TGTGGT-AAGCCGAATGGCTAATGTGAAATATTATATGAGATATGTATATGTGGTAAAGCCGAAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATTATATGAGATATGTATATGTGGTAAAGCCGAAT
*
80580166 GGCTAGTGTGAAATATGTAGGAGAT
66 GGCTAGTGTGAAATATGTATGAGAT
80580191 GTGTGTATAT
Statistics
Matches: 223, Mismatches: 8, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
142 29 0.13
144 72 0.32
145 32 0.14
146 90 0.40
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (145 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATTATATGAGATATGTATATGTGGTAAAGCCGAAT
GGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATG
TATGAGAGATGTATA
Found at i:80580442 original size:36 final size:37
Alignment explanation
Indices: 80580330--80580468 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
80580320 GGAAATATAT
*
80580330 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
80580367 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80580404 TCCGGGTAAGACCCGATGACTACGTGT-GAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
80580440 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
80580469 GGACTATTCG
Statistics
Matches: 98, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 34 0.35
37 64 0.65
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:80580466 original size:73 final size:74
Alignment explanation
Indices: 80580330--80580468 Score: 244
Period size: 73 Copynumber: 1.9 Consensus size: 74
80580320 GGAAATATAT
*
80580330 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATGTCCGGGTAAGACCCGATAACTACGTGTG
80580395 GAGATTATG
66 GAGATTATG
* *
80580404 TCCGGGTAAGACCCGATGACTACGTGT-GAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATGTCCGGGTAAGACCCGATAACTACGTGTG
80580468 G
66 G
80580469 GGACTATTCG
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
73 35 0.56
74 27 0.44
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAAATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GAGATTATG
Found at i:80581808 original size:40 final size:40
Alignment explanation
Indices: 80581746--80582037 Score: 487
Period size: 40 Copynumber: 7.3 Consensus size: 40
80581736 GAGTTATATA
* *
80581746 AATCTGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
80581786 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
80581826 TATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
80581866 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
80581906 TATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
80581946 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
80581986 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAT-
1 AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
80582025 ATATCCGGGCTAA
1 A-ATCCGGGCTAA
80582038 ACCTCGAAAG
Statistics
Matches: 239, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:80582109 original size:28 final size:28
Alignment explanation
Indices: 80582069--80582223 Score: 116
Period size: 28 Copynumber: 5.5 Consensus size: 28
80582059 GAGTTATAAG
* *
80582069 GCACTGTGTGTGCAAGTTCTTCAACCGA
1 GCACTATGTGTGCAAGTTCTTCAATCGA
* * * * *
80582097 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCAAGTTC-TTCAATCGA
*
80582125 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
* ** **
80582154 GCACTATGTGTGCGAGATTGGT-AATTAA
1 GCACTATGTGTGCAAG-TTCTTCAATCGA
* *
80582182 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCAAGTTCTTCAATCGA
*
80582211 GCGCTATGTGTGC
1 GCACTATGTGTGC
80582224 GAAATCAGTC
Statistics
Matches: 100, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
28 55 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCAAGTTCTTCAATCGA
Found at i:80582132 original size:29 final size:28
Alignment explanation
Indices: 80582097--80582225 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 28
80582087 CTTCAACCGA
* *
80582097 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
80582126 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
80582154 GCACTATGTGTGCGAGATTGGTAATTAAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
80582183 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
*
80582211 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
80582226 AATCAGTCAG
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 36 0.45
29 44 0.55
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:80582155 original size:57 final size:57
Alignment explanation
Indices: 80582067--80582253 Score: 234
Period size: 57 Copynumber: 3.3 Consensus size: 57
80582057 TGGAGTTATA
* * * *
80582067 AGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
** * *
80582124 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTA
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
* * *
80582181 AGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-TG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGTTG
* *
80582238 -GGCACTGTGTATGCGA
1 AGGCACTATGTGTGCGA
80582254 AGTGTGTTTC
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
56 14 0.12
57 97 0.87
58 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
Found at i:80585905 original size:48 final size:48
Alignment explanation
Indices: 80585832--80586118 Score: 475
Period size: 48 Copynumber: 5.9 Consensus size: 48
80585822 AAGATAAATA
80585832 TATATGTGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTG--GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
80585882 TATATGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
80585930 TATATTTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
80585978 TATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
80586026 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
80586074 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
80586119 GTGTGTATAT
Statistics
Matches: 222, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
48 214 0.96
50 8 0.04
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:80586300 original size:37 final size:37
Alignment explanation
Indices: 80586248--80586395 Score: 244
Period size: 37 Copynumber: 4.0 Consensus size: 37
80586238 ACATGAAACT
80586248 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAAAT-TATGTCCGGGTAAGACCCGATGACTACGTG
80586285 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
*
80586322 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
* * *
80586359 TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
80586396 GGGACTATTC
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
36 3 0.03
37 104 0.97
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
TGGAAATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:80594128 original size:20 final size:20
Alignment explanation
Indices: 80594103--80594141 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80594093 TGTATCCATA
* *
80594103 AAATTTTAGAATTTTTCATC
1 AAATTTTACAACTTTTCATC
80594123 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
80594142 TTTAGTCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:80609342 original size:21 final size:21
Alignment explanation
Indices: 80609326--80609366 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
80609316 GATAGGCTAC
80609326 ATGGCCATGTGAATAGGTCAA
1 ATGGCCATGTGAATAGGTCAA
*
80609347 ATGGCCATGTGGATAGGTCA
1 ATGGCCATGTGAATAGGTCA
80609367 GACGGTCGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (21 bp):
ATGGCCATGTGAATAGGTCAA
Found at i:80615449 original size:19 final size:18
Alignment explanation
Indices: 80615410--80615449 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
80615400 AAGTAGTCTT
*
80615410 AAACTAAAATAAAAGTAA
1 AAACTAAAATAAAAATAA
80615428 AAACATAAAATAATAAATAA
1 AAAC-TAAAATAA-AAATAA
80615448 AA
1 AA
80615450 GTTTTTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 8 0.42
20 7 0.37
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (18 bp):
AAACTAAAATAAAAATAA
Found at i:80617559 original size:56 final size:57
Alignment explanation
Indices: 80617465--80617576 Score: 147
Period size: 56 Copynumber: 2.0 Consensus size: 57
80617455 GGCCATGTCG
* * *
80617465 CATGGCCGTGGCAATTTATCGTAGCCCGTGTTGAGGAAATTTTTG-CCTGTTTCCAA
1 CATGGCCGTGGCAATTTATCATAGCCAGTGTTGAGGAAATTTTTGCCCTATTTCCAA
* * *
80617521 CATGGTCGTGGCAATTTATCATAGCTAGT-TTTAGGGAAATTTTTGCCCTATTTCCA
1 CATGGCCGTGGCAATTTATCATAGCCAGTGTTGA-GGAAATTTTTGCCCTATTTCCA
80617577 CACGGCCTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 3 0.06
56 36 0.75
57 9 0.19
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (57 bp):
CATGGCCGTGGCAATTTATCATAGCCAGTGTTGAGGAAATTTTTGCCCTATTTCCAA
Found at i:80625987 original size:19 final size:19
Alignment explanation
Indices: 80625963--80626001 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
80625953 AAGCATTACC
80625963 AGGCATGTGATTATTTCAT
1 AGGCATGTGATTATTTCAT
80625982 AGGCATGTGATTATTTCAT
1 AGGCATGTGATTATTTCAT
80626001 A
1 A
80626002 CATCTATAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (19 bp):
AGGCATGTGATTATTTCAT
Found at i:80627919 original size:14 final size:16
Alignment explanation
Indices: 80627880--80627922 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
80627870 TTTCAACATG
*
80627880 AATTAAACTGAATTCAA
1 AATTAAA-TAAATTCAA
80627897 AATTAAATAAATT-AA
1 AATTAAATAAATTCAA
80627912 AA-TAAATAAAT
1 AATTAAATAAAT
80627923 ATGGATTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 9 0.36
15 4 0.16
16 5 0.20
17 7 0.28
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AATTAAATAAATTCAA
Found at i:80628572 original size:15 final size:15
Alignment explanation
Indices: 80628552--80628584 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
80628542 ACAAAGGCAA
80628552 TAAAGGGGATGTTTT
1 TAAAGGGGATGTTTT
80628567 TAAAGGGGATGTTTT
1 TAAAGGGGATGTTTT
80628582 TAA
1 TAA
80628585 GCTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.39
Consensus pattern (15 bp):
TAAAGGGGATGTTTT
Found at i:80628831 original size:28 final size:28
Alignment explanation
Indices: 80628799--80628854 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
80628789 GAACAACTGA
80628799 ATCTAGGTTGATTAATTGAAATCTCTTT
1 ATCTAGGTTGATTAATTGAAATCTCTTT
80628827 ATCTAGGTTGATTAATTGAAATCTCTTT
1 ATCTAGGTTGATTAATTGAAATCTCTTT
80628855 CTAATTAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (28 bp):
ATCTAGGTTGATTAATTGAAATCTCTTT
Found at i:80629576 original size:103 final size:103
Alignment explanation
Indices: 80629388--80629594 Score: 378
Period size: 103 Copynumber: 2.0 Consensus size: 103
80629378 CTTTAGAATG
* * *
80629388 CTTATAAACCCTAAAAATTGAGTTTTTCAGTGTAAAAGAGAAGTAGGGCTCGAAATCGACACGGG
1 CTTAGAAACCCTAAAAATTGAGTTTTTCAGTGTAAAAGAGAAGTAGGACTCGAAATCAACACGGG
*
80629453 CTCACGTATTGGCATGTGGCCAGCCCGTGTGGCTTACA
66 CTCACGTATTGGCATATGGCCAGCCCGTGTGGCTTACA
80629491 CTTAGAAACCCTAAAAATTGAGTTTTTCAGTGTAAAAGAGAAGTAGGACTCGAAATCAACACGGG
1 CTTAGAAACCCTAAAAATTGAGTTTTTCAGTGTAAAAGAGAAGTAGGACTCGAAATCAACACGGG
80629556 CTCACGTATTGGCATATGGCCAGCCCGTGTGGCTTACA
66 CTCACGTATTGGCATATGGCCAGCCCGTGTGGCTTACA
80629594 C
1 C
80629595 GGGCATGTGC
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (103 bp):
CTTAGAAACCCTAAAAATTGAGTTTTTCAGTGTAAAAGAGAAGTAGGACTCGAAATCAACACGGG
CTCACGTATTGGCATATGGCCAGCCCGTGTGGCTTACA
Found at i:80633163 original size:19 final size:19
Alignment explanation
Indices: 80633139--80633175 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
80633129 ACTAAGAAAG
80633139 AATTTTAAAAAATAATAAC
1 AATTTTAAAAAATAATAAC
80633158 AATTTTAAAAAATAATAA
1 AATTTTAAAAAATAATAA
80633176 TAACAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AATTTTAAAAAATAATAAC
Found at i:80633227 original size:6 final size:6
Alignment explanation
Indices: 80633218--80633250 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
80633208 TAATAAGGTG
80633218 AAATAA AAAT-A AAATAAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAAT-AA AAATAA AAATAA AAA
80633251 AGGAAACTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.20
6 15 0.60
7 5 0.20
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:80633239 original size:12 final size:13
Alignment explanation
Indices: 80633218--80633251 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
80633208 TAATAAGGTG
80633218 AAAT-AAAAAT-A
1 AAATAAAAAATAA
80633229 AAATAAAAAATAA
1 AAATAAAAAATAA
80633242 AAATAAAAAA
1 AAATAAAAAA
80633252 GGAAACTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.19
12 6 0.29
13 11 0.52
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:80644622 original size:27 final size:27
Alignment explanation
Indices: 80644592--80644881 Score: 373
Period size: 27 Copynumber: 10.7 Consensus size: 27
80644582 TACTGAAATG
* * *
80644592 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
80644619 CCCTTGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
80644646 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
80644673 CCCTCGATTTACAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* * *
80644700 CCCTTGATTTACAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
*
80644727 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
80644754 CCCTCGATTTATAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
80644781 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
80644808 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
** * *
80644835 CCCTTAATTTGTAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCGTTTTA
* *
80644862 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTATAGAATTAC
80644882 TAAAATACCC
Statistics
Matches: 233, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 233 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCGTTTTA
Found at i:80644918 original size:54 final size:54
Alignment explanation
Indices: 80644860--80645190 Score: 228
Period size: 54 Copynumber: 6.1 Consensus size: 54
80644850 ATTACTGTTT
* * **
80644860 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * * *
80644914 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TAGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* ** * *
80644967 TACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* *** * * *
80645021 TACCACT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
* * * *
80645075 TACCC-CTGATTTACAAAATTA-TAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAATACCCTT-AGTTTGT-AAAATTACCA-AAA
* * ** * * *
80645131 TACCAT-TAGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
*
80645185 CACCCT
1 TACCCT
80645191 TGTAGGATGG
Statistics
Matches: 216, Mismatches: 45, Indels: 32
0.74 0.15 0.11
Matches are distributed among these distances:
52 2 0.01
53 42 0.19
54 122 0.56
55 13 0.06
56 36 0.17
57 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAA
Found at i:80644989 original size:80 final size:81
Alignment explanation
Indices: 80644874--80645080 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 81
80644864 CTCGATTTAC
* * **
80644874 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
80644938 AAATACC-CTAGTCTGT
65 AAATACCACTAGTCTGT
* * ** *
80644954 AAAATTGCTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
* *
80645019 AATACCACTGGTTTGT
66 AATACCACTAGTCTGT
* ** *
80645035 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCC
80645081 TGATTTACAA
Statistics
Matches: 108, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 63 0.58
81 43 0.40
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:80645102 original size:27 final size:28
Alignment explanation
Indices: 80645084--80645162 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 28
80645074 ATACCCCTGA
*
80645084 TTTACAAAATTATAGAAATACCCTTAAC
1 TTTACAAAATTATAGAAATACCCATAAC
* *
80645112 TTT-CTAAAAATTATAGAAATA-CCATTAG
1 TTTAC--AAAATTATAGAAATACCCATAAC
80645140 TTTACAAAATTACT-GAAATACCC
1 TTTACAAAATTA-TAGAAATACCC
80645163 TTGGTTTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
27 14 0.33
28 13 0.30
29 16 0.37
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (28 bp):
TTTACAAAATTATAGAAATACCCATAAC
Found at i:80645169 original size:27 final size:27
Alignment explanation
Indices: 80644869--80645191 Score: 199
Period size: 27 Copynumber: 11.9 Consensus size: 27
80644859 TTACCCTCGA
* * *
80644869 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
80644896 TTTACAAAATTACCAAAATACCC-TCG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
80644922 ATCAGTAAAATTACCAAAATACCC-TAG
1 TTTA-TAAAATTACCAAAATACCCTTAG
* * * * *
80644949 TCTGTAAAATTGCTAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTAG
* *
80644976 TTTGTAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCTTAG
* * *
80645003 TTTGTAAAGTTACCAAAATACCAC-TGG
1 TTTATAAAATTACCAAAATACC-CTTAG
* * * * *
80645030 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCAAAATACCCTTAG
* *
80645057 TTTGTAAAATTACCAAAATACCCCT-G
1 TTTATAAAATTACCAAAATACCCTTAG
* * *
80645083 ATTTACAAAATTA-TAGAAATACCCTTAAC
1 -TTTATAAAATTACCA-AAATACCCTT-AG
* * *
80645112 TTTCTAAAAATTA-TAGAAATACCATTAG
1 TTTAT-AAAATTACCA-AAATACCCTTAG
* ** *
80645140 TTTACAAAATTACTGAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCTTAG
* * * *
80645167 TTTGTAGATTTACCAAAACACCCTT
1 TTTATAAAATTACCAAAATACCCTT
80645192 GTAGGATGGA
Statistics
Matches: 237, Mismatches: 49, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 23 0.10
27 186 0.78
28 9 0.04
29 19 0.08
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTTAG
Found at i:80645253 original size:27 final size:27
Alignment explanation
Indices: 80645210--80645283 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
80645200 GAATGACTAC
*
80645210 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
80645237 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
80645264 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
80645284 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:80645287 original size:27 final size:27
Alignment explanation
Indices: 80645223--80645287 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
80645213 ACCCCTAATA
*
80645223 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
80645250 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
80645277 GGTAAAATGAC
1 GGTAAAATGAC
80645288 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:80646019 original size:20 final size:20
Alignment explanation
Indices: 80645985--80646060 Score: 104
Period size: 20 Copynumber: 3.9 Consensus size: 20
80645975 GATACGTGGG
80645985 GTATGATAT--ACATGAT-T
1 GTATGATATGCACATGATAT
80646002 GATATGATATGCACATGATAT
1 G-TATGATATGCACATGATAT
*
80646023 GTATGACATGCACATGATAT
1 GTATGATATGCACATGATAT
*
80646043 GTATGAAATGCACATGAT
1 GTATGATATGCACATGAT
80646061 GAATTCATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
20 42 0.79
21 2 0.04
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:80646139 original size:26 final size:26
Alignment explanation
Indices: 80646110--80646284 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
80646100 GAGGAAGTGC
**
80646110 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
80646136 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
80646162 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
80646188 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
***
80646214 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTACCG
80646240 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
80646265 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
80646285 ATTAAAGAGG
Statistics
Matches: 132, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 31 0.23
26 101 0.77
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:80646188 original size:52 final size:52
Alignment explanation
Indices: 80646110--80646284 Score: 300
Period size: 52 Copynumber: 3.4 Consensus size: 52
80646100 GAGGAAGTGC
80646110 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
80646162 AAAAGGGCTTATGCCCCAATTTATTGAAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
80646214 AAAAGGGCTTATGCCCCAGTTTATTAAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
80646265 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
80646285 ATTAAAGAGG
Statistics
Matches: 117, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
50 9 0.08
51 24 0.21
52 84 0.72
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:80653029 original size:14 final size:15
Alignment explanation
Indices: 80653010--80653042 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
80653000 CAAGAAAATG
80653010 ATGATACATGAAAA-
1 ATGATACATGAAAAC
*
80653024 ATGATATATGAAAAC
1 ATGATACATGAAAAC
80653039 ATGA
1 ATGA
80653043 GATGATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.55, C:0.06, G:0.15, T:0.24
Consensus pattern (15 bp):
ATGATACATGAAAAC
Found at i:80653887 original size:119 final size:119
Alignment explanation
Indices: 80653676--80653918 Score: 459
Period size: 119 Copynumber: 2.0 Consensus size: 119
80653666 AGTGATGATT
80653676 ATGTTTTGGTATATGTATATATATGTATTTAAGTTTACTTTATGGAGATAACATAAGTATTTATT
1 ATGTTTTGGTATATGTATATATATGTATTTAAGTTTACTTTATGGAGATAACATAAGTATTTATT
*
80653741 ATTGATTGATTTAGAAAGGTAAGATTTAAGCGTGAATGCATGTAACAATATATC
66 ATTGATTGATTGAGAAAGGTAAGATTTAAGCGTGAATGCATGTAACAATATATC
*
80653795 ATGTTTTGGTATATGTATATATATGTATTTAAGTTTACTTTATGGAGATAACATAAGTGTTTATT
1 ATGTTTTGGTATATGTATATATATGTATTTAAGTTTACTTTATGGAGATAACATAAGTATTTATT
*
80653860 ATTGATTGATTGAGAAAGGTAAGATTTAAGCGTGAATGGATGTAACAATATATC
66 ATTGATTGATTGAGAAAGGTAAGATTTAAGCGTGAATGCATGTAACAATATATC
80653914 ATGTT
1 ATGTT
80653919 AGATACTATA
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.42
Consensus pattern (119 bp):
ATGTTTTGGTATATGTATATATATGTATTTAAGTTTACTTTATGGAGATAACATAAGTATTTATT
ATTGATTGATTGAGAAAGGTAAGATTTAAGCGTGAATGCATGTAACAATATATC
Found at i:80656001 original size:21 final size:19
Alignment explanation
Indices: 80655958--80656002 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
80655948 AAATGACTAT
*
80655958 TTGGAGGAAAGCAAGTCAG
1 TTGGAGGAAAGCAAGCCAG
80655977 TTGGCAGGAAAGCAAGCCTAG
1 TTGG-AGGAAAGCAAGCC-AG
80655998 TTGGA
1 TTGGA
80656003 CGTACTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.33, C:0.13, G:0.36, T:0.18
Consensus pattern (19 bp):
TTGGAGGAAAGCAAGCCAG
Found at i:80656441 original size:14 final size:14
Alignment explanation
Indices: 80656422--80656451 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
80656412 ACAGCTAAGC
80656422 CTGAATTTCGATAT
1 CTGAATTTCGATAT
80656436 CTGAATTTCGATAT
1 CTGAATTTCGATAT
80656450 CT
1 CT
80656452 AAAAAGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (14 bp):
CTGAATTTCGATAT
Found at i:80657074 original size:32 final size:33
Alignment explanation
Indices: 80657037--80657100 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
80657027 TTGAGAAAAA
*
80657037 GTTTTAA-TTGAAGAACAAAGCAAAACAAAAGT
1 GTTTTAATTTGAAGAACAAAACAAAACAAAAGT
* *
80657069 GTTTTAATTTGAAGAGCAAAACAAAATAAAAG
1 GTTTTAATTTGAAGAACAAAACAAAACAAAAG
80657101 AAAAGAAGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 7 0.25
33 21 0.75
ACGTcount: A:0.53, C:0.08, G:0.16, T:0.23
Consensus pattern (33 bp):
GTTTTAATTTGAAGAACAAAACAAAACAAAAGT
Found at i:80658218 original size:45 final size:45
Alignment explanation
Indices: 80658163--80658259 Score: 140
Period size: 45 Copynumber: 2.2 Consensus size: 45
80658153 TGTTGCCGGA
* * * *
80658163 CAATCTGGGATGACATAAATGAATTAAGAAACCATCATTGTCGGG
1 CAATCCGGGATGACATAAATGAATTAAGAAAACATCATTGTAGAG
* *
80658208 CAATCCGGGATGACATAAATGATTTAAGAAAATATCATTGTAGAG
1 CAATCCGGGATGACATAAATGAATTAAGAAAACATCATTGTAGAG
80658253 CAATCCG
1 CAATCCG
80658260 AGGTAGTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (45 bp):
CAATCCGGGATGACATAAATGAATTAAGAAAACATCATTGTAGAG
Found at i:80659183 original size:16 final size:16
Alignment explanation
Indices: 80659162--80659194 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80659152 GAATATATTG
80659162 TGTTTTGG-CATGGTTT
1 TGTTTTGGACAT-GTTT
80659178 TGTTTTGGACATGTTT
1 TGTTTTGGACATGTTT
80659194 T
1 T
80659195 AGGTATGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.09, C:0.06, G:0.27, T:0.58
Consensus pattern (16 bp):
TGTTTTGGACATGTTT
Found at i:80659221 original size:27 final size:27
Alignment explanation
Indices: 80659191--80659245 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
80659181 TTTGGACATG
80659191 TTTTAGGTATGGGTTATTGCAAATTCA
1 TTTTAGGTATGGGTTATTGCAAATTCA
80659218 TTTTAGGTATGGGTTATTGCAAATTCA
1 TTTTAGGTATGGGTTATTGCAAATTCA
80659245 T
1 T
80659246 GACATAGTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (27 bp):
TTTTAGGTATGGGTTATTGCAAATTCA
Found at i:80663482 original size:42 final size:42
Alignment explanation
Indices: 80663387--80663679 Score: 134
Period size: 41 Copynumber: 7.1 Consensus size: 42
80663377 GCAAAAATTG
* **
80663387 TAAAACACAGAGTAATAGCGGCGTTTTA--CCAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTAGTAAAAAAACGCCGC
** * *
80663428 TAAAAATGGAGCAATAGTGGCGTTTTAGTAAAAAAACGCTGC
1 TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAAACGCCGC
* * * *
80663470 TAAAAACAGAGCATTAGTGGCACTTTTGGT---AAAACGCCGC
1 TAAAAACAGAGCAATAGCGGC-GTTTTAGTAAAAAAACGCCGC
* *
80663510 TAAAAACCAGAGCATTAGCGGCGCTTTTGGT---AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTAGTAAAAAAACGCCGC
* * * ** *
80663551 AAAAAACCAGAGCATTGGCGGCGCTTTCGGT---AAAACGCCGT
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTAGTAAAAAAACGCCGC
** * *
80663592 TAAAAACCAGAGCGTTAACGGCGCTTTTTGGT---AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG--TTTTAGTAAAAAAACGCCGC
* * *
80663634 TAAAAACCAGAGCATTATCGGCGCTTTTGGT---AAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTAGTAAAAAAACGCCGC
80663675 TAAAA
1 TAAAA
80663680 GTCATATAAC
Statistics
Matches: 217, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
40 33 0.15
41 114 0.53
42 64 0.29
43 6 0.03
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (42 bp):
TAAAAACAGAGCAATAGCGGCGTTTTAGTAAAAAAACGCCGC
Found at i:80663537 original size:41 final size:41
Alignment explanation
Indices: 80663460--80663679 Score: 334
Period size: 41 Copynumber: 5.4 Consensus size: 41
80663450 TTTTAGTAAA
* * *
80663460 AAAACGCTGCTAAAAA-CAGAGCATTAGTGGCACTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
80663500 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
80663541 AAAACGCCGCAAAAAACCAGAGCATTGGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* * *
80663582 AAAACGCCGTTAAAAACCAGAGCGTTAACGGCGCTTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTTGGT
*
80663624 AAAACGCCGCTAAAAACCAGAGCATTATCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
80663665 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
80663680 GTCATATAAC
Statistics
Matches: 163, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 15 0.09
41 111 0.68
42 37 0.23
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:80663562 original size:82 final size:83
Alignment explanation
Indices: 80663460--80663679 Score: 329
Period size: 83 Copynumber: 2.7 Consensus size: 83
80663450 TTTTAGTAAA
* *
80663460 AAAACGCTGCTAAAAA-CAGAGCATTAGTGGCACTTTTGGTAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGTGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCA
*
80663524 TTAGCGGCGC-TTTTGGT
66 TTAACGGCGCTTTTTGGT
* * * * * *
80663541 AAAACGCCGCAAAAAACCAGAGCATTGGCGGCGCTTTCGGTAAAACGCCGTTAAAAACCAGAGCG
1 AAAACGCCGCTAAAAACCAGAGCATTAGTGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCA
80663606 TTAACGGCGCTTTTTGGT
66 TTAACGGCGCTTTTTGGT
80663624 AAAACGCCGCTAAAAACCAGAGCATTA-TCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGT-GGCGCTTTTGGTAAAACGCCGCTAAAA
80663680 GTCATATAAC
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 14 0.11
82 51 0.42
83 57 0.47
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (83 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGTGGCGCTTTTGGTAAAACGCCGCTAAAAACCAGAGCA
TTAACGGCGCTTTTTGGT
Found at i:80663858 original size:7 final size:7
Alignment explanation
Indices: 80663842--80663895 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
80663832 TATCATTATA
80663842 GTTTAAG
1 GTTTAAG
*
80663849 GTTTATG
1 GTTTAAG
80663856 GTTTAAG
1 GTTTAAG
* * *
80663863 ATATATG
1 GTTTAAG
* *
80663870 ATTTAGG
1 GTTTAAG
80663877 GTTTAAG
1 GTTTAAG
80663884 GTTTAAG
1 GTTTAAG
80663891 GTTTA
1 GTTTA
80663896 GGAGTTAACT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:80663859 original size:14 final size:14
Alignment explanation
Indices: 80663837--80663895 Score: 64
Period size: 14 Copynumber: 4.2 Consensus size: 14
80663827 TTAATTATCA
*
80663837 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
80663851 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* * *
80663865 ATATGATTTAGGGT
1 TTATGGTTTAAGGT
*
80663879 TTAAGGTTTAAGGT
1 TTATGGTTTAAGGT
80663893 TTA
1 TTA
80663896 GGAGTTAACT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:80668378 original size:15 final size:15
Alignment explanation
Indices: 80668358--80668391 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
80668348 TAATTTGATG
*
80668358 TTTGGATGTTCCATT
1 TTTGGATGTACCATT
80668373 TTTGGATGTACCATT
1 TTTGGATGTACCATT
80668388 TTTG
1 TTTG
80668392 TTCATCCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.53
Consensus pattern (15 bp):
TTTGGATGTACCATT
Found at i:80669670 original size:43 final size:43
Alignment explanation
Indices: 80669598--80669704 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
80669588 TTTTTGAATT
*
80669598 TCATGA-CTTTTAGCGGCGTTTTTAAGAAAAGCGCCGCTAAAGA
1 TCATGATC-TTTAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAGA
* * * *
80669641 TCGTGATCTTTAGCGGAGTTTGTAGGAAAAGCGCCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAGA
*
80669684 TCATGATCTTTAACGGCGTTT
1 TCATGATCTTTAGCGGCGTTT
80669705 TTTTCAAATA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 54 0.98
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TCATGATCTTTAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAGA
Found at i:80671894 original size:67 final size:67
Alignment explanation
Indices: 80671786--80671920 Score: 225
Period size: 67 Copynumber: 2.0 Consensus size: 67
80671776 AAGCTACTTG
* ** * *
80671786 AGAAGCCGAAGATGTGATGAAGCGATGATATCCTTATTTGTTTAGTTCAAGTAAATTTTGAGGAC
1 AGAAGCCGAAGATGCGATGAAGCGAAAATATCCCTATTTGTTTAGTTCAAGTAAATTTCGAGGAC
80671851 GA
66 GA
80671853 AGAAGCCGAAGATGCGATGAAGCGAAAATATCCCTATTTGTTTAGTTCAAGTAAATTTCGAGGAC
1 AGAAGCCGAAGATGCGATGAAGCGAAAATATCCCTATTTGTTTAGTTCAAGTAAATTTCGAGGAC
80671918 GA
66 GA
80671920 A
1 A
80671921 ATTCTTTTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (67 bp):
AGAAGCCGAAGATGCGATGAAGCGAAAATATCCCTATTTGTTTAGTTCAAGTAAATTTCGAGGAC
GA
Found at i:80677571 original size:42 final size:42
Alignment explanation
Indices: 80677515--80677595 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
80677505 GTTTTTATCA
80677515 AAAAAATAGAATTTATTCTATGAAATAAATTTTCCCTACATC
1 AAAAAATAGAATTTATTCTATGAAATAAATTTTCCCTACATC
80677557 AAAAAATAGAATTTATTCTATGAAATAAATTTTCCCTAC
1 AAAAAATAGAATTTATTCTATGAAATAAATTTTCCCTAC
80677596 TTTTTGGCAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.46, C:0.14, G:0.05, T:0.36
Consensus pattern (42 bp):
AAAAAATAGAATTTATTCTATGAAATAAATTTTCCCTACATC
Found at i:80682163 original size:18 final size:18
Alignment explanation
Indices: 80682129--80682521 Score: 220
Period size: 18 Copynumber: 21.1 Consensus size: 18
80682119 TCATTAACTC
* *
80682129 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
80682146 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
*
80682164 TCAGTAACAATCAATTAT
1 TCAGTAACAATCAGTTAT
* * *
80682182 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
80682200 TCAGTATCGATCAATTAATCGGTTAT
1 TCAGTA---A-C----AATCAGTTAT
* * *
80682226 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* *
80682244 TTAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
80682261 TCAGTAACAATCAATTAT
1 TCAGTAACAATCAGTTAT
* * *
80682279 TCAATAATAACCAGTTAT
1 TCAGTAACAATCAGTTAT
*
80682297 TCAGTATCGATCAATTAATCGGTTAT
1 TCAGTA---A-C----AATCAGTTAT
* * *
80682323 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
80682341 TCAGTAA-AATCAGATAT
1 TCAGTAACAATCAGTTAT
*
80682358 TCAGTAACAATTAAGTTAT
1 TCAGTAACAA-TCAGTTAT
* *
80682377 TCAGTAGCAGTCA-TTCAT
1 TCAGTAACAATCAGTT-AT
*
80682395 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
80682413 TCAGTAATAATCAATTAT
1 TCAGTAACAATCAGTTAT
* *
80682431 TCAGTAATATTCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
80682449 TCAGTAACAGTCTA-ATAT
1 TCAGTAACAATC-AGTTAT
* * *
80682467 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
* * * *
80682485 CCGGTAACAGTCAATTAT
1 TCAGTAACAATCAGTTAT
*
80682503 TCAGTAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
80682521 T
1 T
80682522 TTATACCTTT
Statistics
Matches: 287, Mismatches: 65, Indels: 47
0.72 0.16 0.12
Matches are distributed among these distances:
17 34 0.12
18 204 0.71
19 17 0.06
21 2 0.01
22 2 0.01
23 2 0.01
26 26 0.09
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Found at i:80682233 original size:62 final size:61
Alignment explanation
Indices: 80682159--80682277 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
80682149 GTAACAGTCA
* * * *
80682159 GTTATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTATCGATCAATTAATCG
1 GTTATCCAGTAACAATCAATTATTCAATAA-AACCAGATATTCAGTAACAATCAATTAATCG
* * * *
80682221 GTTATCCAGTAACAGTCAATTATTTAGTAAAATCAGATATTCAGTAACAATCAATTA
1 GTTATCCAGTAACAATCAATTATTCAATAAAACCAGATATTCAGTAACAATCAATTA
80682278 TTCAATAATA
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
61 23 0.47
62 26 0.53
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.34
Consensus pattern (61 bp):
GTTATCCAGTAACAATCAATTATTCAATAAAACCAGATATTCAGTAACAATCAATTAATCG
Found at i:80682262 original size:97 final size:97
Alignment explanation
Indices: 80682142--80682379 Score: 422
Period size: 97 Copynumber: 2.4 Consensus size: 97
80682132 GAACAATTAT
* *
80682142 TTATTCAGTAACAGTCAGTTATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTAT
1 TTATTCAGTAA-AATCAGATATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTAT
80682207 CGATCAATTAATCGGTTATCCAGTAACAGTCAA
65 CGATCAATTAATCGGTTATCCAGTAACAGTCAA
*
80682240 TTATTTAGTAAAATCAGATATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTATC
1 TTATTCAGTAAAATCAGATATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTATC
80682305 GATCAATTAATCGGTTATCCAGTAACAGTCAA
66 GATCAATTAATCGGTTATCCAGTAACAGTCAA
*
80682337 TTATTCAGTAAAATCAGATATTCAGTAACAATTAAGTTATTCA
1 TTATTCAGTAAAATCAGATATTCAGTAACAATCAA-TTATTCA
80682380 GTAGCAGTCA
Statistics
Matches: 134, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
97 117 0.87
98 17 0.13
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (97 bp):
TTATTCAGTAAAATCAGATATTCAGTAACAATCAATTATTCAATAATAACCAGTTATTCAGTATC
GATCAATTAATCGGTTATCCAGTAACAGTCAA
Found at i:80682752 original size:45 final size:45
Alignment explanation
Indices: 80682690--80682799 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
80682680 TCCGAAACAG
* *
80682690 TAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
* * * *
80682735 TAACGGTAATAGTAACAGTATTCGACACACAAAGTGCCGAATCGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
*
80682780 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
80682800 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
Found at i:80682790 original size:51 final size:49
Alignment explanation
Indices: 80682685--80682822 Score: 151
Period size: 45 Copynumber: 2.9 Consensus size: 49
80682675 ACAAATCCGA
* * * *
80682685 AACAGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCG
1 AACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
*
80682734 ---A-TAACGGTAATAGTAACAGTATTCGACACACAAAGTGCCGAATCGG
1 AACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATC-G
* * *
80682780 TAACAGTAACGGTAACAGTAACAGTAGTCGGCACA-TAAGTGCC
1 -AACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCC
80682823 TGATCAGTAA
Statistics
Matches: 74, Mismatches: 9, Indels: 11
0.79 0.10 0.12
Matches are distributed among these distances:
45 38 0.51
46 2 0.03
50 8 0.11
51 26 0.35
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (49 bp):
AACAGTAACGGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
Found at i:80682794 original size:12 final size:12
Alignment explanation
Indices: 80682777--80682801 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80682767 AGTGCCGAAT
80682777 CGGTAACAGTAA
1 CGGTAACAGTAA
80682789 CGGTAACAGTAA
1 CGGTAACAGTAA
80682801 C
1 C
80682802 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:80684358 original size:20 final size:18
Alignment explanation
Indices: 80684324--80684368 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
80684314 AAACTTTCAA
80684324 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
80684342 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
80684362 -TTTCCCT
1 TTTTCCCT
80684369 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:80686532 original size:28 final size:25
Alignment explanation
Indices: 80686484--80686536 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 25
80686474 GTAACCTTTG
80686484 GTGGACTTCCTCATCTAATAGCTCCT
1 GTGGACTTCCTCATCTAATAG-TCCT
80686510 GTGGACTATCCTTCAT-TACATAGTCCT
1 GTGGACT-TCC-TCATCTA-ATAGTCCT
80686537 AGTCAAACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 7 0.29
27 9 0.38
28 8 0.33
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (25 bp):
GTGGACTTCCTCATCTAATAGTCCT
Found at i:80687993 original size:70 final size:70
Alignment explanation
Indices: 80687917--80688051 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
80687907 TAGTTTATTA
* * * *
80687917 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCAGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGTG
80687982 CTTAG
66 CTTAG
80687987 CTAATTAATATGCTGCAGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGTG
1 CTAATTAATATGCTGCAGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGTG
80688052 TTATGTGCTA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCAGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGTG
CTTAG
Found at i:80688881 original size:43 final size:44
Alignment explanation
Indices: 80688823--80688994 Score: 206
Period size: 43 Copynumber: 4.0 Consensus size: 44
80688813 TATCGAAATG
* *
80688823 TGATATACGGGCTTCGAGCCTAGCAGGCTATAATGTCGGTGAAA
1 TGATATACAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
80688867 TGATAT-CAGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAGA
1 TGATATACAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
80688910 TAATATAAAGGCCTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATACAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
80688954 TGATAT-CGGGCTTCAAGCCTAGCAGGCGA-AATACCGGTGAA
1 TGATATACAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
80688995 TGAATTCAGA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 11 0.10
43 54 0.50
44 44 0.40
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
TGATATACAGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:80701215 original size:9 final size:8
Alignment explanation
Indices: 80701203--80701288 Score: 68
Period size: 8 Copynumber: 9.9 Consensus size: 8
80701193 GAAATACCAG
80701203 AAAATGAAA
1 AAAAT-AAA
80701212 AAAATAAA
1 AAAATAAA
80701220 AAAATAAA
1 AAAATAAA
80701228 ATTGAAATGAAA
1 A---AAAT-AAA
80701240 ATAAA-AATA
1 A-AAATAA-A
80701249 AAAATAAA
1 AAAATAAA
*
80701257 AATAA-AAT
1 AA-AATAAA
80701265 AAAATAAA
1 AAAATAAA
80701273 TAAAATAAA
1 -AAAATAAA
80701282 AAAATAA
1 AAAATAA
80701289 GAATAAAAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 19
0.75 0.03 0.22
Matches are distributed among these distances:
7 2 0.03
8 33 0.51
9 19 0.29
10 3 0.05
11 4 0.06
12 4 0.06
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (8 bp):
AAAATAAA
Found at i:80701220 original size:6 final size:6
Alignment explanation
Indices: 80701211--80701297 Score: 75
Period size: 6 Copynumber: 13.8 Consensus size: 6
80701201 AGAAAATGAA
* ** *
80701211 AAAAAT AAAAAA ATAAAAT TGAAAT GAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * *
80701260 AAAATAA AATAAAT AAAATAA AAAAAT AAGAAT AAAAA
1 AAAA-AT AA-AAAT AAAA-AT AAAAAT AAAAAT AAAAA
80701298 GATAGGAGGA
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
6 47 0.73
7 15 0.23
8 2 0.03
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:80703373 original size:22 final size:22
Alignment explanation
Indices: 80703333--80703374 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80703323 TTGCCCCTAG
* * *
80703333 CATGCCCGTGGTTTTCTATCCC
1 CATGCCCATGGTCTCCTATCCC
80703355 CATGCCCATGGTCTCCTATC
1 CATGCCCATGGTCTCCTATC
80703375 AAGTTCACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.38, G:0.17, T:0.33
Consensus pattern (22 bp):
CATGCCCATGGTCTCCTATCCC
Found at i:80708876 original size:14 final size:16
Alignment explanation
Indices: 80708853--80708884 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
80708843 AGATTCACAT
80708853 ACCAAGATATAA-TCA
1 ACCAAGATATAATTCA
80708868 ACCAA-ATATAATTCA
1 ACCAAGATATAATTCA
80708883 AC
1 AC
80708885 ATACCATCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.53, C:0.22, G:0.03, T:0.22
Consensus pattern (16 bp):
ACCAAGATATAATTCA
Found at i:80716704 original size:40 final size:40
Alignment explanation
Indices: 80716660--80716747 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
80716650 GACAAATCGA
* * **
80716660 CTATATTTGGCACTTAGTGTGCGTTTC-GAGATACCTTCGG
1 CTATATATAGCACTTAGTGTGCGAATCAGA-ATACCTTCGG
* *
80716700 CTATATATAGCATTTAGTGTGCGAATCAGAATAGCTTCGG
1 CTATATATAGCACTTAGTGTGCGAATCAGAATACCTTCGG
80716740 CTATATAT
1 CTATATAT
80716748 TAATAGCTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (40 bp):
CTATATATAGCACTTAGTGTGCGAATCAGAATACCTTCGG
Found at i:80718231 original size:16 final size:16
Alignment explanation
Indices: 80718210--80718242 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
80718200 TACAGTAATC
*
80718210 AATGTGTTGATCCAAG
1 AATGTGTTCATCCAAG
80718226 AATGTGTTCATCCAAG
1 AATGTGTTCATCCAAG
80718242 A
1 A
80718243 TCAATCAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30
Consensus pattern (16 bp):
AATGTGTTCATCCAAG
Found at i:80722926 original size:40 final size:40
Alignment explanation
Indices: 80722882--80723025 Score: 243
Period size: 40 Copynumber: 3.6 Consensus size: 40
80722872 CTACTCGCTT
*** *
80722882 AAATGCCTTCGGGACTTAGCCCGGTTTTAGTAGCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
80722922 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
*
80722962 AAATGCCTTCGGGACTTAGCCCAGAAATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
80723002 AAATGCCTTCGGGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
80723026 TTATCATCCG
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCAC
Found at i:80733159 original size:48 final size:46
Alignment explanation
Indices: 80733052--80733412 Score: 217
Period size: 47 Copynumber: 7.8 Consensus size: 46
80733042 GATTTCTTGT
* *
80733052 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
* ** *
80733098 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGGTGTAGA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CCACATGATGA
* * * *
80733146 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-AATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGA
* * * *
80733192 -TAGCCAGTGTAAGACGTGTCTAGGAGACA--CATCAGCTA-A-GA-GTT
1 GT-GCCAGTGTAAGACATGTCT-GG-GACATGCATCGGCCACATGATG-A
* * * *
80733236 GTACTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGA
* * * * *
80733283 -TAGCCAGGGTAAGACGTGTCTGGGACACGCATCGGCTA-A-GA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-A
** * *
80733327 GTGCTTGTGTAAGACATGTCTGGGACATGCATC-ACCACGTATATATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC--AT-GATGA
* * *
80733375 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
80733413 AACTTATCCT
Statistics
Matches: 236, Mismatches: 52, Indels: 49
0.70 0.15 0.15
Matches are distributed among these distances:
42 4 0.02
43 5 0.02
44 52 0.22
45 4 0.02
46 49 0.21
47 60 0.25
48 39 0.17
49 17 0.07
50 5 0.02
51 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
Found at i:80733328 original size:91 final size:91
Alignment explanation
Indices: 80733051--80733412 Score: 365
Period size: 91 Copynumber: 3.9 Consensus size: 91
80733041 GGATTTCTTG
* * * * *
80733051 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGT-GCCAGTATAAGACC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGA-TAGCCAGTGTAAGA-C
* * *
80733114 ATGTCTGGGACATGGCATCGG-TGTAGAGAT
64 GTGTCTGGGACA-CGCATCGGCT-AAGAG-T
* *
80733144 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-AATGATAGCCAGTGTAAGACG
1 -TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGATAGCCAGTGTAAGACG
* * * *
80733208 TGTCTAGGAGACACATCAGCTAAGAGT
65 TGTCTGGGACACGCATCGGCTAAGAGT
* * * *
80733235 TGTACTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGATAGCCAGGGTAAGACGT
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGATAGCCAGTGTAAGACGT
80733300 GTCTGGGACACGCATCGGCTAAGAGT
66 GTCTGGGACACGCATCGGCTAAGAGT
* * * * * *
80733326 TGTGCTTGTGTAAGACATGTCTGGGACATGCATC-ACCACGTATATATGAGAGCTAGTATAAGAC
1 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG-ATA-ATGATAGCCAGTGTAAGA-
* *
80733390 CATGTCTGGGACATGGCATCGGC
63 CGTGTCTGGGACA-CGCATCGGC
80733413 AACTTATCCT
Statistics
Matches: 224, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
90 42 0.19
91 76 0.34
92 23 0.10
93 24 0.11
94 58 0.26
95 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (91 bp):
TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATAATGATAGCCAGTGTAAGACGT
GTCTGGGACACGCATCGGCTAAGAGT
Found at i:80734261 original size:55 final size:55
Alignment explanation
Indices: 80734173--80734291 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 55
80734163 TTAAACTTTT
* * *
80734173 AGTCAGTGTTGTACACGGGTAGGCCATACGGGTGTGTGCCATGG-TCGTGTCTTAA
1 AGTCAGTGTCGTACACGGGCAGGCCACACGGGTGTGTGCCATGGCT-GTGTCTTAA
* * * *
80734228 AGTCAGTGTCGTACACGGGCAGGTCACATGGGTGTGTGCCATGGCTGTGTGTTGA
1 AGTCAGTGTCGTACACGGGCAGGCCACACGGGTGTGTGCCATGGCTGTGTCTTAA
80734283 AGTCAGTGT
1 AGTCAGTGT
80734292 TGCACATGGG
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
55 55 0.98
56 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.29
Consensus pattern (55 bp):
AGTCAGTGTCGTACACGGGCAGGCCACACGGGTGTGTGCCATGGCTGTGTCTTAA
Found at i:80740657 original size:47 final size:47
Alignment explanation
Indices: 80740582--80740992 Score: 263
Period size: 47 Copynumber: 8.8 Consensus size: 47
80740572 GATTTCTTGT
* * *
80740582 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
* *
80740628 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGACGTA-GA-GATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACGATGATGA
* * * *
80740676 GTGCCAATGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
* * * * *
80740723 -TAGCCAATGTAAGACGTGTCTGGGACATGCATCGACTAAGA-GCT--
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
* * * * * * * *
80740767 GTGCTAGTGTAAGATATGTCTAGAACATGCATCGGCCTCGACGATTA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
* * * **
80740814 -TAGCCAGTGTAAGACGTGTCTGGGACACGCATCGACTA--A-GATTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
* * * * *
80740858 GTGCTAGTGTAAGACTTGTCTGAGACATGCATC-AACACGTATATATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACG-AT-GATGA
* ** * * *
80740906 GAGGTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATG-
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACGATGATGA
* *
80740954 CTAGCCAGTATAAGACCATGTCTGGGACATGGCATCGAC
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
80740993 AACTTATCCC
Statistics
Matches: 281, Mismatches: 62, Indels: 41
0.73 0.16 0.11
Matches are distributed among these distances:
43 2 0.01
44 60 0.21
45 5 0.02
46 27 0.10
47 91 0.32
48 36 0.13
49 50 0.18
50 7 0.02
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATGATGA
Found at i:80740806 original size:91 final size:90
Alignment explanation
Indices: 80740580--80740890 Score: 367
Period size: 91 Copynumber: 3.4 Consensus size: 90
80740570 CAGATTTCTT
* * * *
80740580 GTGTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGAGT-GCCAGTATAAGAC
1 GTGTGCCAGTGTAAGACATGTCTAGAACATGCATCGGCCTCGATGATGA-TAGCCAGTGTAAGA-
*
80740643 CATGTCTGGGACATGGCATCGACGTAGAGA
64 CGTGTCTGGGACAT-GCATCGAC-TA-AGA
* * * *
80740673 TGAGTGCCAATGTAAGACATGTCTAGGACATGCATCGGCCTCGATGATGATAGCCAATGTAAGAC
1 -GTGTGCCAGTGTAAGACATGTCTAGAACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGAC
80740738 GTGTCTGGGACATGCATCGACTAAGA
65 GTGTCTGGGACATGCATCGACTAAGA
* * * *
80740764 GCTGTGCTAGTGTAAGATATGTCTAGAACATGCATCGGCCTCGACGATTATAGCCAGTGTAAGAC
1 G-TGTGCCAGTGTAAGACATGTCTAGAACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGAC
*
80740829 GTGTCTGGGACACGCATCGACTAAGA
65 GTGTCTGGGACATGCATCGACTAAGA
* * *
80740855 TTTGTGCTAGTGTAAGACTTGTCT-GAGACATGCATC
1 -GTGTGCCAGTGTAAGACATGTCTAGA-ACATGCATC
80740891 AACACGTATA
Statistics
Matches: 193, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
90 3 0.02
91 112 0.58
92 2 0.01
93 8 0.04
94 52 0.27
95 16 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (90 bp):
GTGTGCCAGTGTAAGACATGTCTAGAACATGCATCGGCCTCGATGATGATAGCCAGTGTAAGACG
TGTCTGGGACATGCATCGACTAAGA
Found at i:80742769 original size:6 final size:6
Alignment explanation
Indices: 80742743--80742790 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
80742733 AGTACCTAAT
* * *
80742743 CAGTAA TCAGTAA CGGTAG CAGTAG CAGTAA CAGTAA CAGTAA CAGTA
1 CAGTAA -CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTAA CAGTA
80742791 TTCAACACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.42, C:0.17, G:0.23, T:0.19
Consensus pattern (6 bp):
CAGTAA
Found at i:80742820 original size:45 final size:45
Alignment explanation
Indices: 80742770--80742880 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
80742760 AGCAGTAGCA
80742770 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATAT-
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-GAAT-TG
*
80742815 GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAATTG
1 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATTG
*
80742860 GTAACAGTAACGGTAACAGTA
1 GTAACAGTAACAGTAACAGTA
80742881 ACAATAGTCG
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
44 1 0.02
45 60 0.97
46 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCGAATTG
Found at i:80748916 original size:59 final size:59
Alignment explanation
Indices: 80748849--80748965 Score: 225
Period size: 59 Copynumber: 2.0 Consensus size: 59
80748839 AGGGAGTGTA
80748849 TGGCTATGCCCCACTCAACCAGAGTATGGTATTCGATATTTGGAAGATTGGAGTTTTGC
1 TGGCTATGCCCCACTCAACCAGAGTATGGTATTCGATATTTGGAAGATTGGAGTTTTGC
*
80748908 TGGCTATGCCCCACTCAACCAGAGTATGGTATTTGATATTTGGAAGATTGGAGTTTTG
1 TGGCTATGCCCCACTCAACCAGAGTATGGTATTCGATATTTGGAAGATTGGAGTTTTG
80748966 TTTATCTAAC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (59 bp):
TGGCTATGCCCCACTCAACCAGAGTATGGTATTCGATATTTGGAAGATTGGAGTTTTGC
Found at i:80757686 original size:12 final size:13
Alignment explanation
Indices: 80757660--80757688 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
80757650 TTGTCTATTA
80757660 TTTTATTCTATGT
1 TTTTATTCTATGT
80757673 TTTTATTCTA-GT
1 TTTTATTCTATGT
80757685 TTTT
1 TTTT
80757689 CATAGTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (13 bp):
TTTTATTCTATGT
Found at i:80758918 original size:33 final size:32
Alignment explanation
Indices: 80758865--80758926 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
80758855 TTTTCTTGAA
*
80758865 TTTTTTTTTGTTTTCTGTTTAGTTTGTTTTTGG
1 TTTTTTTTTGCTTTCTGTTTAGTTT-TTTTTGG
80758898 TTTTTATTTTGCTTTC-GTTTAGTTTTTTT
1 TTTTT-TTTTGCTTTCTGTTTAGTTTTTTT
80758927 GAGGGCAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 4 0.15
33 14 0.52
34 9 0.33
ACGTcount: A:0.05, C:0.05, G:0.15, T:0.76
Consensus pattern (32 bp):
TTTTTTTTTGCTTTCTGTTTAGTTTTTTTTGG
Found at i:80769213 original size:215 final size:215
Alignment explanation
Indices: 80768841--80769273 Score: 722
Period size: 215 Copynumber: 2.0 Consensus size: 215
80768831 ACTCTGTCCC
* * * *
80768841 AAGTTTTTTGGTTCTTTTTTTGTGGAGGCTAAAGTTGGAAAGGTAGCATTTAAGCTCCAATTGCC
1 AAGTTTTTTGGTCCTTTTATTATGGAGGCTAAAGTTGGAAAGGTAGCATATAAGCTCCAATTGCC
* * *
80768906 TCCAGGCACTCAAATCCACCCTACCTTTCATGTGTCTCAGCTTAAACGCCATGTTGGGAAGTAGC
66 ACCAGGCACTCAAATCCACCCTACCTTCCATGTGTCTCAACTTAAACGCCATGTTGGGAAGTAGC
* **
80768971 TAACCCAATTGACTCTGCCTCCAATAGGTTTTGATGGAGTTATACTTAAGGAACCAAGTTGTATC
131 TAACCCAATTGACTCTGCCTCCAATAGGTTTTGATGGAGCTATACTTAAGGAACCAAACTGTATC
*
80769036 CCCGATAAATGCATGGTTTG
196 CCCGATAAATGCATGGTTCG
80769056 AAGTTTTTTGGTCCTTTTATTATGGAGGCTAAAGTTGGAAAGGTAGCATATAAGCTCCAATTGCC
1 AAGTTTTTTGGTCCTTTTATTATGGAGGCTAAAGTTGGAAAGGTAGCATATAAGCTCCAATTGCC
*
80769121 ACCAGGCACTCAAATCCACCCTACCTTCCATGTGTCTCAACTTAAACGCCATGTTGGGAAGTATC
66 ACCAGGCACTCAAATCCACCCTACCTTCCATGTGTCTCAACTTAAACGCCATGTTGGGAAGTAGC
* * *
80769186 TAACTCAATTGACTCTTCCTTCAATAGGTTTTGATGGAGCTATACTTAAGGAACCAAACTGTATC
131 TAACCCAATTGACTCTGCCTCCAATAGGTTTTGATGGAGCTATACTTAAGGAACCAAACTGTATC
*
80769251 CTCGATAAATGCATGGTTCG
196 CCCGATAAATGCATGGTTCG
80769271 AAG
1 AAG
80769274 GGGCAACCAA
Statistics
Matches: 202, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
215 202 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (215 bp):
AAGTTTTTTGGTCCTTTTATTATGGAGGCTAAAGTTGGAAAGGTAGCATATAAGCTCCAATTGCC
ACCAGGCACTCAAATCCACCCTACCTTCCATGTGTCTCAACTTAAACGCCATGTTGGGAAGTAGC
TAACCCAATTGACTCTGCCTCCAATAGGTTTTGATGGAGCTATACTTAAGGAACCAAACTGTATC
CCCGATAAATGCATGGTTCG
Found at i:80774186 original size:47 final size:47
Alignment explanation
Indices: 80774117--80774337 Score: 224
Period size: 47 Copynumber: 4.7 Consensus size: 47
80774107 GGGGTAAGGT
80774117 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGATCAT-ATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT-GATCATCATCTCAA
** *
80774164 GTCGATGCCATGTCCTGGACATGGTCTTACACTGA-CTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGATC-ATCATCTC-AA
* * * *
80774212 GTCGATG-CATGTCCCAGACAT-GTCTTTCACT-AGCTTACATCTCGA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGATCAT-CATCTCAA
* * *
80774257 GACTGATG-CATGTCCCAGACAT-GTCTTACACT-AGCACTCGTCTCAA
1 GTC-GATGCCATGTCCCAGACATGGTCTTACACTGATCA-TCATCTCAA
*
80774303 TGCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTG
80774338 GCTCTCATAA
Statistics
Matches: 149, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
45 6 0.04
46 60 0.40
47 65 0.44
48 18 0.12
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGATCATCATCTCAA
Found at i:80774363 original size:47 final size:46
Alignment explanation
Indices: 80774216--80774385 Score: 129
Period size: 46 Copynumber: 3.7 Consensus size: 46
80774206 CTCGTAGTCG
* * *
80774216 ATGCATGTCCCAGACATGTCTTTCACTAGCTTACATC-TCGAGACTG---
1 ATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCGTCTA-AATGCCA
* *
80774262 ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTAAATGCCA
*
80774308 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTC-TCATAATATGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTC-TAA-AT-GCCA
* * *
80774356 ATGCATGTCCTAAACATGTCTTACTCTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
80774386 TCACAATAAC
Statistics
Matches: 103, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
43 5 0.05
44 4 0.04
45 2 0.02
46 46 0.45
47 30 0.29
48 16 0.16
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTAAATGCCA
Found at i:80774377 original size:140 final size:140
Alignment explanation
Indices: 80774120--80774386 Score: 317
Period size: 140 Copynumber: 1.9 Consensus size: 140
80774110 GTAAGGTGTC
* * **
80774120 GATGCCATGTCCCAGACATGGTCTTACACTGGATCATATCTCAAGTCGATGCCATGTCCTGGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGCATCA-ATCTCAAGCCGATGCCATGTCCCAGACA
* * * * * *
80774185 TGGTCTTACACTGACTATCATCTCGTAGTCGATGCATGTCCCAGACATGTCTTTCACTAGCTTAC
65 TGGTCTTACACTGACTATCATATCATAGCCAATGCATGTCCCAAACATGTCTTACACTAGCTTAC
80774250 ATCTCGAGACT
130 ATCTCGAGACT
*
80774261 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTC-GTCTCAATGCCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCA-TCAATCTCAA-GCCGATGCCATGTCCCAGA
* * * * *
80774323 CATGGTCTTACACTGGCTCTCATAAT-ATGGCCAATGCATGTCCTAAACATGTCTTACTCTAGCT
63 CATGGTCTTACACTGACTATCAT-ATCATAGCCAATGCATGTCCCAAACATGTCTTACACTAGCT
80774387 CACAATAACC
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
139 16 0.15
140 83 0.78
141 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (140 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCATCAATCTCAAGCCGATGCCATGTCCCAGACAT
GGTCTTACACTGACTATCATATCATAGCCAATGCATGTCCCAAACATGTCTTACACTAGCTTACA
TCTCGAGACT
Found at i:80778082 original size:23 final size:23
Alignment explanation
Indices: 80778052--80778096 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
80778042 CGAAATGCAG
80778052 TCTTCGGTACATCTTGCTCTTTA
1 TCTTCGGTACATCTTGCTCTTTA
80778075 TCTTCGGTACATCTTGCTCTTT
1 TCTTCGGTACATCTTGCTCTTT
80778097 CACTCTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.11, C:0.27, G:0.13, T:0.49
Consensus pattern (23 bp):
TCTTCGGTACATCTTGCTCTTTA
Found at i:80781806 original size:29 final size:29
Alignment explanation
Indices: 80781743--80781810 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
80781733 TAATCAACCA
80781743 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
80781772 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
80781801 CGCACACTTA
1 CGCACACTTA
80781811 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:80781951 original size:29 final size:30
Alignment explanation
Indices: 80781912--80781990 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
80781902 CTTAATAATC
80781912 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
80781942 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
80781971 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80781991 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:80789973 original size:29 final size:29
Alignment explanation
Indices: 80789910--80789977 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
80789900 TAATCAACCA
80789910 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
80789939 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
80789968 CGCACACTTA
1 CGCACACTTA
80789978 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:80790118 original size:29 final size:30
Alignment explanation
Indices: 80790079--80790157 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
80790069 CTTAATAATC
80790079 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
80790109 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
80790138 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80790158 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:80792133 original size:55 final size:55
Alignment explanation
Indices: 80792074--80792194 Score: 129
Period size: 55 Copynumber: 2.2 Consensus size: 55
80792064 TGCCCTTCAA
* *
80792074 CCGTGGGCAACACTGAC-TTATCAACACGGCCTTGGAACACGCCCGTACT-GCCTAC
1 CCGTGGACAACACTGACATT-TCAACACGGCCATGGAACACGCCCGT-CTGGCCTAC
* * * ** *
80792129 CCGTGGACGACACTGTCATTTTAACACGGCCATGGCGCACGCCCGTGTGGCCTAC
1 CCGTGGACAACACTGACATTTCAACACGGCCATGGAACACGCCCGTCTGGCCTAC
*
80792184 CCGTGCACAAC
1 CCGTGGACAAC
80792195 TTTGAGCTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
54 1 0.02
55 51 0.94
56 2 0.04
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (55 bp):
CCGTGGACAACACTGACATTTCAACACGGCCATGGAACACGCCCGTCTGGCCTAC
Done.