Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 239 of 362
Found at i:80801791 original size:30 final size:30
Alignment explanation
Indices: 80801755--80801814 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80801745 ATTTAATACG
* *
80801755 AACTTTGGTAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
*
80801785 AACTTTGGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
80801815 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:80804198 original size:15 final size:15
Alignment explanation
Indices: 80804157--80804219 Score: 54
Period size: 15 Copynumber: 4.2 Consensus size: 15
80804147 GAAAACCAGA
*
80804157 ATAAAGAAGTCCAAG
1 ATAAAGAAATCCAAG
* * **
80804172 ACAGAGGCATCCAAG
1 ATAAAGAAATCCAAG
*
80804187 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
80804202 GTATAGAAATCCAAG
1 ATAAAGAAATCCAAG
80804217 ATA
1 ATA
80804220 CCATATCATA
Statistics
Matches: 35, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:80811315 original size:86 final size:86
Alignment explanation
Indices: 80811187--80811366 Score: 333
Period size: 86 Copynumber: 2.1 Consensus size: 86
80811177 TGTTTATGAC
* * *
80811187 GTCATTACAAAAATAAGGGCACACGGCCAAGGCACACGCACGTGCCTTCAGGCTGTGTCCTTCAC
1 GTCATAACAAAAATAAGGGCACACGGCCAAGGCACACACACGTGCCTTCAGGCCGTGTCCTTCAC
80811252 ACAGCTGAGACACATGGCTAT
66 ACAGCTGAGACACATGGCTAT
80811273 GTCATAACAAAAATAAGGGCACACGGCCAAGGCACACACACGTGCCTTCAGGCCGTGTCCTTCAC
1 GTCATAACAAAAATAAGGGCACACGGCCAAGGCACACACACGTGCCTTCAGGCCGTGTCCTTCAC
80811338 ACAGCTGAGACACATGGCTAT
66 ACAGCTGAGACACATGGCTAT
80811359 GTCATAAC
1 GTCATAAC
80811367 CCGTGTGGCT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 91 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (86 bp):
GTCATAACAAAAATAAGGGCACACGGCCAAGGCACACACACGTGCCTTCAGGCCGTGTCCTTCAC
ACAGCTGAGACACATGGCTAT
Found at i:80816763 original size:21 final size:21
Alignment explanation
Indices: 80816729--80816772 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
80816719 AAATCTCTAC
*
80816729 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
80816750 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
80816771 AA
1 AA
80816773 ACTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:80816969 original size:19 final size:19
Alignment explanation
Indices: 80816947--80817012 Score: 71
Period size: 19 Copynumber: 3.5 Consensus size: 19
80816937 AATTTGAATA
80816947 TTATTTAATATTTTTTCAT
1 TTATTTAATATTTTTTCAT
* * **
80816966 TTATTTTA-AGTTTTAAAT
1 TTATTTAATATTTTTTCAT
80816984 ATTATTTAATATTTTTTCAT
1 -TTATTTAATATTTTTTCAT
*
80817004 TTATGTAAT
1 TTATTTAAT
80817013 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
18 7 0.19
19 22 0.61
20 7 0.19
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (19 bp):
TTATTTAATATTTTTTCAT
Found at i:80816969 original size:38 final size:38
Alignment explanation
Indices: 80816927--80817007 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
80816917 ATGGTAACGG
*
80816927 TTTATTTTAAAATTTGAATATTATTTAATATTTTTTCA
1 TTTATTTTAAAATTTAAATATTATTTAATATTTTTTCA
**
80816965 TTTATTTTAAGTTTTAAATATTATTTAATATTTTTTCA
1 TTTATTTTAAAATTTAAATATTATTTAATATTTTTTCA
80817003 TTTAT
1 TTTAT
80817008 GTAATTTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (38 bp):
TTTATTTTAAAATTTAAATATTATTTAATATTTTTTCA
Found at i:80821383 original size:126 final size:126
Alignment explanation
Indices: 80821154--80821531 Score: 555
Period size: 126 Copynumber: 3.0 Consensus size: 126
80821144 CTAAGGTCAA
* * *
80821154 TCATGAACTACTATAGAAAAAGAGCATCCATGTGGGAGC--TTTTTCAGAAATTTTGCTGACATT
1 TCATGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTC-GTAATTTTGCTGACAGT
* * * * *
80821217 GCATCGTGCTTGAAACGCTTTTGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTT
65 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
* *
80821279 TCATGAACTACTATAGAAAAAGAGCATCCACGTGGTAGCTTTTTTTCGTAATTTTGCTGACAGTA
1 TCATGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGACAGTG
* *
80821344 CATCCTACTTGAAGTGTTTTTGACACTATTTGTTCAGAAATGTCTTCTCAAAATTATTTTT
66 CATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
* * * * * *
80821405 TCAAGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAACTTTTTTTTGTATTTTTGCTTGA-AGT
1 TCATGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTCGTAATTTTGC-TGACAGT
80821469 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
65 GCATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
80821531 T
1 T
80821532 TAGGGTACAA
Statistics
Matches: 228, Mismatches: 22, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
125 37 0.16
126 182 0.80
127 9 0.04
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (126 bp):
TCATGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTCGTAATTTTGCTGACAGTG
CATCCTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTT
Found at i:80821680 original size:24 final size:24
Alignment explanation
Indices: 80821632--80821771 Score: 147
Period size: 24 Copynumber: 5.5 Consensus size: 24
80821622 AACTCTAATT
80821632 TAATTTATTTAAAATCC-TAGAACCC
1 TAATTTATTTAAAA-CCATA-AACCC
80821657 TAATTTATTTAAAACCATAAACCC
1 TAATTTATTTAAAACCATAAACCC
80821681 TAATTTATTTAAAACCATAAACCC
1 TAATTTATTTAAAACCATAAACCC
* **
80821705 TAACTTAGTTTATTTAAAAACCCTAAACTT
1 T-A---A-TTTATTT-AAAACCATAAACCC
*
80821735 TAATTTATTTAAAACCCTAGAACCC
1 TAATTTATTTAAAACCATA-AACCC
*
80821760 TAATTTACTTAA
1 TAATTTATTTAA
80821772 TTTATTTAAA
Statistics
Matches: 101, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
24 41 0.41
25 38 0.38
26 1 0.01
28 1 0.01
29 8 0.08
30 12 0.12
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.36
Consensus pattern (24 bp):
TAATTTATTTAAAACCATAAACCC
Found at i:80821725 original size:54 final size:56
Alignment explanation
Indices: 80821657--80821795 Score: 176
Period size: 54 Copynumber: 2.5 Consensus size: 56
80821647 CCTAGAACCC
80821657 TAATTTATTTAAAACCATAAACCCTAATTTATTTAAAACCATA-AACCCT-A-ACT
1 TAATTTATTTAAAACCATAAACCCTAATTTATTTAAAACCATAGAACCCTAATACT
* * ** *
80821710 TAGTTTATTTAAAAACCCTAAACTTTAATTTATTTAAAACCCTAGAACCCTAATTTACT
1 TAATTTATTT-AAAACCATAAACCCTAATTTATTTAAAACCATAGAACCCTAA--TACT
*
80821769 TAATTTATTTAAAACCATAAATCCTAA
1 TAATTTATTTAAAACCATAAACCCTAA
80821796 ATCCTAAATT
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
53 9 0.13
54 29 0.41
55 6 0.09
56 1 0.01
58 13 0.19
59 12 0.17
ACGTcount: A:0.43, C:0.19, G:0.01, T:0.37
Consensus pattern (56 bp):
TAATTTATTTAAAACCATAAACCCTAATTTATTTAAAACCATAGAACCCTAATACT
Found at i:80821742 original size:78 final size:79
Alignment explanation
Indices: 80821592--80821772 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 79
80821582 TTAAAAAAAC
* * * * *
80821592 TAAACCCTAATTTAATTAAATTTAACCCTAAACTCTAATTTAATTTATTTAAAATCCTAGAACCC
1 TAAACCCTAATTT-ATTTAA--TAACCATAAACCCTAACTTAATTTATTTAAAACCCTAGAACCC
80821657 TAATTTATTTAAAACCA
63 TAATTTATTTAAAACCA
* **
80821674 TAAACCCTAATTTATTTAA-AACCATAAACCCTAACTTAGTTTATTTAAAAACCCTA-AACTTTA
1 TAAACCCTAATTTATTTAATAACCATAAACCCTAACTTAATTTATTT-AAAACCCTAGAACCCTA
*
80821737 ATTTATTTAAAACCC
65 ATTTATTTAAAACCA
*
80821752 TAGAACCCTAATTTACTTAAT
1 TA-AACCCTAATTTATTTAAT
80821773 TTATTTAAAA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
78 44 0.51
79 24 0.28
81 5 0.06
82 13 0.15
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.37
Consensus pattern (79 bp):
TAAACCCTAATTTATTTAATAACCATAAACCCTAACTTAATTTATTTAAAACCCTAGAACCCTAA
TTTATTTAAAACCA
Found at i:80821746 original size:25 final size:24
Alignment explanation
Indices: 80821713--80821771 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
80821703 CCTAACTTAG
**
80821713 TTTATTTAAAAACCCTAAACTTTAA
1 TTTATTT-AAAACCCTAAACCCTAA
80821738 TTTATTTAAAACCCTAGAACCCTAA
1 TTTATTTAAAACCCTA-AACCCTAA
*
80821763 TTTACTTAA
1 TTTATTTAA
80821772 TTTATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 9 0.30
25 21 0.70
ACGTcount: A:0.41, C:0.19, G:0.02, T:0.39
Consensus pattern (24 bp):
TTTATTTAAAACCCTAAACCCTAA
Found at i:80821775 original size:34 final size:31
Alignment explanation
Indices: 80821681--80821895 Score: 124
Period size: 34 Copynumber: 7.2 Consensus size: 31
80821671 CCATAAACCC
*
80821681 TAATTTATTTAAAACCATAAACCCT-AA-CT
1 TAATTTATTTAAAACCCTAAACCCTAAATCT
*
80821710 TAGTTTATTT--AA----AAACCCTAAA-CTT
1 TAATTTATTTAAAACCCTAAACCCTAAATC-T
*
80821735 TAATTTATTTAAAACCCTAGAACCCTAATTTACT
1 TAATTTATTTAAAACCCTA-AACCCTAA-AT-CT
* * *
80821769 TAATTTATTTAAAACCATAAATCCTAAATCC
1 TAATTTATTTAAAACCCTAAACCCTAAATCT
*
80821800 TAAATTATTT---A----AAACCCT-AA-CT
1 TAATTTATTTAAAACCCTAAACCCTAAATCT
* *
80821822 TAATTTATTTAAAACCCTAAAAACCCTAATTTAGT
1 TAATTTATTTAAAACCCT--AAACCCTAA-AT-CT
* *
80821857 TAATTTATTTAAAACCCCTAAACCCTAAACCC
1 TAATTTATTTAAAA-CCCTAAACCCTAAATCT
80821889 TAATTTA
1 TAATTTA
80821896 AATAATTTTT
Statistics
Matches: 143, Mismatches: 17, Indels: 49
0.68 0.08 0.23
Matches are distributed among these distances:
22 10 0.07
23 9 0.06
24 9 0.06
25 11 0.08
27 4 0.03
28 1 0.01
29 9 0.06
31 18 0.13
32 17 0.12
33 7 0.05
34 28 0.20
35 16 0.11
36 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.01, T:0.36
Consensus pattern (31 bp):
TAATTTATTTAAAACCCTAAACCCTAAATCT
Found at i:80821778 original size:88 final size:87
Alignment explanation
Indices: 80821681--80821884 Score: 286
Period size: 88 Copynumber: 2.3 Consensus size: 87
80821671 CCATAAACCC
* **
80821681 TAATTTATTTAAAACCATAAACCCTAA-CTTAGTTTATTTAAAAACCCTAAACTTTAATTTATTT
1 TAATTTATTTAAAACCATAAACCCTAATCCTAAATTATTT-AAAACCCT-AAC-TTAATTTATTT
*
80821745 AAAACCCT-AGAACCCTAATTTACT
63 AAAACCCTAAAAACCCTAATTTACT
*
80821769 TAATTTATTTAAAACCATAAATCCTAAATCCTAAATTATTTAAAACCCTAACTTAATTTATTTAA
1 TAATTTATTTAAAACCATAAACCCT-AATCCTAAATTATTTAAAACCCTAACTTAATTTATTTAA
*
80821834 AACCCTAAAAACCCTAATTTAGT
65 AACCCTAAAAACCCTAATTTACT
*
80821857 TAATTTATTTAAAACCCCTAAACCCTAA
1 TAATTTATTTAAAA-CCATAAACCCTAA
80821885 ACCCTAATTT
Statistics
Matches: 104, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
87 19 0.18
88 57 0.55
89 19 0.18
90 9 0.09
ACGTcount: A:0.43, C:0.20, G:0.01, T:0.36
Consensus pattern (87 bp):
TAATTTATTTAAAACCATAAACCCTAATCCTAAATTATTTAAAACCCTAACTTAATTTATTTAAA
ACCCTAAAAACCCTAATTTACT
Found at i:80821845 original size:31 final size:34
Alignment explanation
Indices: 80821810--80821878 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 34
80821800 TAAATTATTT
80821810 AAAACCCT-A-ACTTAATTTATTTAAAA-CCCTA
1 AAAACCCTAATACTTAATTTATTTAAAACCCCTA
*
80821841 AAAACCCTAATTTAGTTAATTTATTTAAAACCCCTA
1 AAAACCCTAA--TACTTAATTTATTTAAAACCCCTA
80821877 AA
1 AA
80821879 CCCTAAACCC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
31 8 0.25
32 1 0.03
35 16 0.50
36 7 0.22
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.33
Consensus pattern (34 bp):
AAAACCCTAATACTTAATTTATTTAAAACCCCTA
Found at i:80821892 original size:41 final size:42
Alignment explanation
Indices: 80821833--80821912 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
80821823 AATTTATTTA
**
80821833 AAACCCTAAAAACCCTAATTTAGTTAATTTATT-TAAAACCCCT
1 AAACCCT-AAAACCCTAATTTAAATAATTT-TTATAAAACCCCT
80821876 AAACCCT-AAACCCTAATTTAAATAATTTTTATAAAAC
1 AAACCCTAAAACCCTAATTTAAATAATTTTTATAAAAC
80821913 AACACTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 2 0.06
41 25 0.74
43 7 0.21
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (42 bp):
AAACCCTAAAACCCTAATTTAAATAATTTTTATAAAACCCCT
Found at i:80821921 original size:43 final size:41
Alignment explanation
Indices: 80821833--80821927 Score: 102
Period size: 41 Copynumber: 2.2 Consensus size: 41
80821823 AATTTATTTA
** *
80821833 AAACCCTAAAAACCCTAATTTAGTTAATTTATTTAAAACCCCT
1 AAACCCT--AAACCCTAATTTAAATAATTTATTTAAAACCACT
80821876 AAACCCTAAACCCTAATTTAAATAATTT-TTATAAAACAACACT
1 AAACCCTAAACCCTAATTTAAATAATTTATT-TAAAAC--CACT
*
80821919 AAATCCTAA
1 AAACCCTAA
80821928 TTTATTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 2 0.04
41 25 0.56
43 18 0.40
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (41 bp):
AAACCCTAAACCCTAATTTAAATAATTTATTTAAAACCACT
Found at i:80822756 original size:24 final size:24
Alignment explanation
Indices: 80822729--80822776 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
80822719 AATTGAATTT
80822729 AATAGTATTAAATAATTTGACTAA
1 AATAGTATTAAATAATTTGACTAA
80822753 AATAGTATTAAATAATTTGACTAA
1 AATAGTATTAAATAATTTGACTAA
80822777 CTTTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (24 bp):
AATAGTATTAAATAATTTGACTAA
Found at i:80822983 original size:17 final size:17
Alignment explanation
Indices: 80822942--80822988 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
80822932 TCCTTTTTAC
*
80822942 ATTAAAAT-ATAATTTT
1 ATTAAAATAATAATATT
80822958 A-TAATAATAATAATATT
1 ATTAA-AATAATAATATT
*
80822975 ATTAAAATATTAAT
1 ATTAAAATAATAAT
80822989 TTTTATAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.12
16 4 0.15
17 16 0.62
18 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTAAAATAATAATATT
Found at i:80824250 original size:7 final size:7
Alignment explanation
Indices: 80824238--80824262 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80824228 ATCTAGAATA
80824238 ATTAAAT
1 ATTAAAT
80824245 ATTAAAT
1 ATTAAAT
80824252 ATTAAAT
1 ATTAAAT
80824259 ATTA
1 ATTA
80824263 TTCTTGGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTAAAT
Found at i:80828101 original size:50 final size:50
Alignment explanation
Indices: 80828044--80828143 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
80828034 GTCTAATCAG
*
80828044 AAATGAGCAAACTGATTGAAAGACTAATATGTCGTTTATCGACTCCAATT
1 AAATGAGCAAACTGATTGAAAGACTAATATATCGTTTATCGACTCCAATT
80828094 AAATGAGCAAACTGATTGAAAGACTAATATATCGTTTATCGACTCCAATT
1 AAATGAGCAAACTGATTGAAAGACTAATATATCGTTTATCGACTCCAATT
80828144 GGGGAGATGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (50 bp):
AAATGAGCAAACTGATTGAAAGACTAATATATCGTTTATCGACTCCAATT
Found at i:80831856 original size:29 final size:29
Alignment explanation
Indices: 80831802--80831857 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
80831792 CACACAGGTA
** *
80831802 GACACACGGTATGTGTCTAGACCGTGTGT
1 GACACACGGTATGCCTCCAGACCGTGTGT
80831831 GACACACGGTATGCCTCACAGA-CGTGT
1 GACACACGGTATGCCTC-CAGACCGTGT
80831858 TGAATGGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (29 bp):
GACACACGGTATGCCTCCAGACCGTGTGT
Found at i:80837074 original size:19 final size:21
Alignment explanation
Indices: 80837050--80837089 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
80837040 TATGGCAAAG
80837050 ACATGGG-G-CTGAAGAGGCT
1 ACATGGGAGCCTGAAGAGGCT
*
80837069 ACATGGGAGCCTGAGGAGGCT
1 ACATGGGAGCCTGAAGAGGCT
80837090 GAGGAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.25, C:0.17, G:0.42, T:0.15
Consensus pattern (21 bp):
ACATGGGAGCCTGAAGAGGCT
Found at i:80841128 original size:34 final size:35
Alignment explanation
Indices: 80841074--80841170 Score: 90
Period size: 34 Copynumber: 2.8 Consensus size: 35
80841064 AGTGACATTG
* * * * *
80841074 TGGAAATAGTTTACAAGCTCTATAAAGCGAT-GCCA
1 TGGAAATGGTCTACAGGCTCTACAAAGCG-TCACCA
**
80841109 T-GAAATGGTCTACAGGCTCTACAGGGCGTCACCA
1 TGGAAATGGTCTACAGGCTCTACAAAGCGTCACCA
* *
80841143 TGGAAATGGTCTACTGGCTCTACGAAGC
1 TGGAAATGGTCTACAGGCTCTACAAAGC
80841171 AACACCTTGA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
33 1 0.02
34 25 0.51
35 23 0.47
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (35 bp):
TGGAAATGGTCTACAGGCTCTACAAAGCGTCACCA
Found at i:80851485 original size:5 final size:5
Alignment explanation
Indices: 80851475--80851545 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
80851465 TATGTCTTTC
* *
80851475 AAAAT AAAAT --AAT AAAATT GAAAT GAAA- AAAAT AAAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT -AAAAT -AAAAT
80851520 AAAAAT AAAAT AAAAT AAAAAT AAAA
1 -AAAAT AAAAT AAAAT -AAAAT AAAA
80851546 CTAACTAAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
3 3 0.05
4 3 0.05
5 26 0.45
6 26 0.45
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80851511 original size:6 final size:6
Alignment explanation
Indices: 80851502--80851545 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
80851492 TTGAAATGAA
80851502 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAT -AAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
80851546 CTAACTAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:80851523 original size:11 final size:11
Alignment explanation
Indices: 80851502--80851545 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
80851492 TTGAAATGAA
80851502 AAAAATAAAAAT
1 AAAAAT-AAAAT
80851514 AAAAATAAAA-
1 AAAAATAAAAT
80851524 ATAAAATAAAAT
1 A-AAAATAAAAT
80851536 AAAAATAAAA
1 AAAAATAAAA
80851546 CTAACTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.03
11 22 0.73
12 7 0.23
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:80851556 original size:16 final size:16
Alignment explanation
Indices: 80851502--80851545 Score: 70
Period size: 16 Copynumber: 2.6 Consensus size: 16
80851492 TTGAAATGAA
80851502 AAAAATAAAAATAAAAAT
1 AAAAAT-AAAAT-AAAAT
80851520 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
80851536 AAAAATAAAA
1 AAAAATAAAA
80851546 CTAACTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 15 0.58
17 5 0.19
18 6 0.23
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:80851556 original size:22 final size:21
Alignment explanation
Indices: 80851475--80851556 Score: 80
Period size: 22 Copynumber: 3.9 Consensus size: 21
80851465 TATGTCTTTC
*
80851475 AAAAT-AAAATAAT-AAAATT
1 AAAATAAAAATAATAAAAATA
*
80851494 GAAATGAAAAA-AATAAAAATA
1 AAAAT-AAAAATAATAAAAATA
*
80851515 AAAATAAAAATAAAATAAAATA
1 AAAATAAAAATAATA-AAAATA
*
80851537 AAAATAAAACTAACTAAAAA
1 AAAATAAAAATAA-TAAAAA
80851557 ATAGGAGTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.08
20 8 0.16
21 16 0.31
22 22 0.43
23 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.18
Consensus pattern (21 bp):
AAAATAAAAATAATAAAAATA
Found at i:80853589 original size:28 final size:28
Alignment explanation
Indices: 80853549--80853605 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
80853539 GTCGCACGCC
80853549 TATGTCGAAGAAACAGAATCGAGCTTTG
1 TATGTCGAAGAAACAGAATCGAGCTTTG
80853577 TATGTCGAAGAAACAGAATCGAGCTTTG
1 TATGTCGAAGAAACAGAATCGAGCTTTG
80853605 T
1 T
80853606 CCTTGGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (28 bp):
TATGTCGAAGAAACAGAATCGAGCTTTG
Found at i:80859883 original size:48 final size:48
Alignment explanation
Indices: 80859778--80859955 Score: 211
Period size: 48 Copynumber: 3.7 Consensus size: 48
80859768 GTATAATGCT
* * *
80859778 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC--CATCAAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCAAGGC
*
80859825 GATGCCATGTCCTAGACATGGTCTTACACTGACTATCAAAATCAAGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGC
* * * *
80859873 GATGCCATGTCCCAGACATGGTCTTATACT-AGCTCTCACATATC-CGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-AAATCAAG-G-C
80859923 GATGCCATGTCCCAGACATGGTCTTACACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
80859956 ACATCTCGTA
Statistics
Matches: 114, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
46 3 0.03
47 33 0.29
48 41 0.36
49 5 0.04
50 31 0.27
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCAAGGC
Found at i:80859983 original size:95 final size:96
Alignment explanation
Indices: 80859775--80860053 Score: 280
Period size: 95 Copynumber: 3.0 Consensus size: 96
80859765 AGGGTATAAT
*
80859775 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--ATCAAGT--CGATGCCATGT
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATATC-CGTGCCGATGCCATGT
*
80859835 CCTAGACATGGTCTTACACTGACTATCAAAATCAAG
64 CCCAGACATGGTCTTACACTGAC-A-C-AAATCAAG
* *
80859871 GC-GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATCCGTGCCGATGCCATGTCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCGTGCCGATGCCATGTCC
** *
80859935 CAGACATGGTCTTACACTGACACATCTCGTA-
66 CAGACATGGTCTTACACTGACACAAATC-AAG
* * * *
80859966 GCTGATG-CATATCCCAGACAT-GTCTTACACTGGCT-T-ACATCT-CGAGGCCAATG-CATGTC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCG-TGCCGATGCCATGTC
80860025 CCAGACAT-GTCTTACACTGGCACACAAAT
65 CCAGACATGGTCTTACACT-G-ACACAAAT
80860054 AACCCAAATG
Statistics
Matches: 158, Mismatches: 15, Indels: 24
0.80 0.08 0.12
Matches are distributed among these distances:
90 10 0.06
91 17 0.11
92 17 0.11
93 1 0.01
94 14 0.09
95 52 0.33
96 10 0.06
97 4 0.03
98 33 0.21
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (96 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATATCCGTGCCGATGCCATGTCC
CAGACATGGTCTTACACTGACACAAATCAAG
Found at i:80860007 original size:46 final size:48
Alignment explanation
Indices: 80859778--80860045 Score: 238
Period size: 46 Copynumber: 5.7 Consensus size: 48
80859768 GTATAATGCT
* *
80859778 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-C-TCGTAGCC
* * ** * *
80859825 GATGCCATGTCCTAGACATGGTCTTACACTGAC-TATCAAAATC-AAGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-C-ATCTCGTAGCC
* * *
80859873 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCACATATCCGT-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CGTAGCC
* *
80859923 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCC
*
80859969 GATG-CATATCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCC
*
80860015 AATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
80860046 ACACAAATAA
Statistics
Matches: 187, Mismatches: 22, Indels: 25
0.80 0.09 0.11
Matches are distributed among these distances:
44 12 0.06
45 17 0.09
46 50 0.27
47 32 0.17
48 35 0.19
49 4 0.02
50 36 0.19
51 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCC
Found at i:80877951 original size:46 final size:46
Alignment explanation
Indices: 80877900--80878026 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
80877890 GTAGCTGATG
80877900 CATGTCCCAGACATGTCTTACACTGC-CTTACATCTCAAGGCCAAT-A
1 CATGTCCCAGACATGTCTTACACTGCTC-T-CATCTCAAGGCCAATGA
* * *
80877946 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGC
1 CATGTCCCAGACATGTCTTACACT-GCTCTCATCTCAAGGCCAATGA
* *
80877993 CATTTCCCAAACATGGTCTTACACTGGCTCTCAT
1 CATGTCCCAGACAT-GTCTTACACT-GCTCTCAT
80878027 AATGTGGCCG
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
46 37 0.52
47 15 0.21
48 19 0.27
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGCTCTCATCTCAAGGCCAATGA
Found at i:80878007 original size:138 final size:144
Alignment explanation
Indices: 80877751--80878017 Score: 359
Period size: 138 Copynumber: 1.9 Consensus size: 144
80877741 GTATAATGAC
* * *
80877751 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGACACCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCAAGGCCAACACCATGTCCCAGA
** *
80877816 CATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGACATGGTCTTACACTA
66 CATGGTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTA
80877881 AAACATCTCGTAGCT
130 AAACATCTCGTAGCT
* ** *
80877896 GATG-CATGTCCCAGACAT-GTCTTACACTGCCT-TAC-ATCTCAAGGCCAATA-CATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CGAAATCAAGGCCAACACCATGTCCCAG
* *
80877956 ACAT-GTCTTACACTAGCTCT-CATCTCAATGCCGATGCCATTTCCCAAACATGGTCTTACACT
65 ACATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACT
80878018 GGCTCTCATA
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
138 37 0.34
140 16 0.15
141 13 0.12
142 11 0.10
143 14 0.13
144 14 0.13
145 4 0.04
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCAAGGCCAACACCATGTCCCAGA
CATGGTCTTACACTAGCTCTACATATCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAA
AACATCTCGTAGCT
Found at i:80881778 original size:14 final size:15
Alignment explanation
Indices: 80881743--80881780 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
80881733 ATTTGATTGA
*
80881743 GAAAATTATTTAATT
1 GAAAATTAATTAATT
80881758 GAAAATTAATTAATT
1 GAAAATTAATTAATT
80881773 -AAAATTAA
1 GAAAATTAA
80881781 AATAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (15 bp):
GAAAATTAATTAATT
Found at i:80887224 original size:39 final size:39
Alignment explanation
Indices: 80887126--80887225 Score: 101
Period size: 39 Copynumber: 2.6 Consensus size: 39
80887116 CATATTCACT
* * ** *
80887126 TTTAAGTATGTATCACATTACAGATATAATTACATAACG
1 TTTAAGTATATATCACAATACTCATATAATTACATAACA
* * ** * *
80887165 TTTAAGCACATATCGTAATACTCATATAATTGCATAATA
1 TTTAAGTATATATCACAATACTCATATAATTACATAACA
80887204 TTTAAGTATATATCACAATACT
1 TTTAAGTATATATCACAATACT
80887226 TAAAAACAAG
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (39 bp):
TTTAAGTATATATCACAATACTCATATAATTACATAACA
Found at i:80890389 original size:40 final size:40
Alignment explanation
Indices: 80890315--80890576 Score: 429
Period size: 40 Copynumber: 6.6 Consensus size: 40
80890305 AACCCAAGTA
* * *
80890315 CCTTCGGGATTTAG-CCGGATCTAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
80890354 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
80890394 CCTTCGGGACTTGGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80890434 CCTTTGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80890474 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80890514 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80890554 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80890577 CATTCGAATA
Statistics
Matches: 208, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
39 12 0.06
40 195 0.94
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80898357 original size:40 final size:40
Alignment explanation
Indices: 80898283--80898544 Score: 456
Period size: 40 Copynumber: 6.6 Consensus size: 40
80898273 AACCCAAGTA
* *
80898283 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
80898322 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
80898362 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80898402 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80898442 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80898482 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
80898522 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
80898545 CATTCGAATA
Statistics
Matches: 213, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
39 12 0.06
40 200 0.94
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80903190 original size:46 final size:47
Alignment explanation
Indices: 80903046--80903226 Score: 183
Period size: 46 Copynumber: 3.9 Consensus size: 47
80903036 TTTGTGTGCT
* * *
80903046 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGCC
* ** * * * *
80903092 AGTGTAAGACCATGTCTGGGATATGGCATCAACATTGAGA-CTAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
* *
80903140 AGTGTAAGATATGTTTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
80903186 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
80903227 GTCAATGTGT
Statistics
Matches: 108, Mismatches: 21, Indels: 12
0.77 0.15 0.09
Matches are distributed among these distances:
45 2 0.02
46 59 0.55
47 25 0.23
48 21 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:80908878 original size:17 final size:17
Alignment explanation
Indices: 80908840--80908874 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
80908830 ATTAAATTAA
80908840 TTCAAATAAATTAATTT
1 TTCAAATAAATTAATTT
*
80908857 TTCAATTAAA-TAATTT
1 TTCAAATAAATTAATTT
80908873 TT
1 TT
80908875 TCAACCCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTCAAATAAATTAATTT
Found at i:80910347 original size:13 final size:13
Alignment explanation
Indices: 80910326--80910359 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80910316 GTGCAGACTT
*
80910326 CACATGCCCAAGG
1 CACACGCCCAAGG
*
80910339 CACACGCCCAGGG
1 CACACGCCCAAGG
80910352 CACACGCC
1 CACACGCC
80910360 TGTGCTTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.47, G:0.24, T:0.03
Consensus pattern (13 bp):
CACACGCCCAAGG
Found at i:80911419 original size:42 final size:41
Alignment explanation
Indices: 80911311--80911429 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 41
80911301 CATACCAATG
* * *
80911311 CCATATCCCAGATATGGTCTTACATGGGATCTCGTATCGACA
1 CCATATCCCAGATATGGTCTTACA-CGAATCTCATATCGACA
* * ***
80911353 CCAATAGCCCAGCTATGGTCTTACACGAATCCTCATATCGGTT
1 CC-ATATCCCAGATATGGTCTTACACGAAT-CTCATATCGACA
80911396 CCATATCCCAGATATGGTCTTACACGAAATCTCA
1 CCATATCCCAGATATGGTCTTACACG-AATCTCA
80911430 ATAACCCTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
42 31 0.48
43 33 0.52
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (41 bp):
CCATATCCCAGATATGGTCTTACACGAATCTCATATCGACA
Found at i:80915315 original size:47 final size:47
Alignment explanation
Indices: 80915259--80915480 Score: 147
Period size: 47 Copynumber: 4.8 Consensus size: 47
80915249 CATTATGAGA
* *
80915259 GCCATTGTAAGACCGT-TCTAGGACATGGCATCGGCATTGAGACGAAG
1 GCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGC-TCGAGACGAAG
* * * *
80915306 GCTAGTGTAAGA-CATGTTTAGGACAT-GCATCTGCCTCGAGACGTAA-
1 GCCAGTGTAAGACCGTGTCTAGGACATGGCATC-GGCTCGAGACG-AAG
* * *
80915352 GCCAGTGTCAA-A-CATGTCTGGGACAT-GCATCGGCTACGAGATGATA-
1 GCCAGTGT-AAGACCGTGTCTAGGACATGGCATCGGCT-CGAGACGA-AG
* ** * * * * *
80915398 GTCAGTGTAAGACTATGTCTAGGACATGGTATCGACTTGAGA-TATG
1 GCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGCTCGAGACGAAG
* *
80915444 AGCCAATGTAAGACCGTGTTTAGGACATGGCATCGGC
1 -GCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
80915481 ACCTTACCGT
Statistics
Matches: 138, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
45 6 0.04
46 55 0.40
47 70 0.51
48 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCGTGTCTAGGACATGGCATCGGCTCGAGACGAAG
Found at i:80915359 original size:46 final size:44
Alignment explanation
Indices: 80915216--80915425 Score: 156
Period size: 46 Copynumber: 4.5 Consensus size: 44
80915206 TGTGTGAGTT
* * * *
80915216 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATC-GCCTCGA-GACGA-AGCC
* * * * *
80915262 ATTGTAAGAC-CGTTCTAGGACATGGCATCGGCATTGAGACGAAGGCT
1 AGTGTAAGACATG-TCTAGGACAT-GCATC-GCCTCGAGACGAA-GCC
*
80915309 AGTGTAAGACATGTTTAGGACATGCATCTGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATC-GCCTCGAGACG-AAGCC
* * * *
80915355 AGTGTCAA-ACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGT-AAGACATGTCTAGGACATGCATCGCCT-CGAGACGA-AGCC
80915401 AGTGTAAGACTATGTCTAGGACATG
1 AGTGTAAGAC-ATGTCTAGGACATG
80915426 GTATCGACTT
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
45 7 0.05
46 74 0.56
47 48 0.37
48 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTAGGACATGCATCGCCTCGAGACGAAGCC
Found at i:80920852 original size:24 final size:23
Alignment explanation
Indices: 80920812--80920856 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
80920802 TTTCATAATT
* *
80920812 TAAAATATATATTTATTAAACTA
1 TAAAATATAAATATATTAAACTA
80920835 TAAAATTATAAATATATTAAAC
1 TAAAA-TATAAATATATTAAAC
80920857 ATATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAAATATAAATATATTAAACTA
Found at i:80922157 original size:52 final size:52
Alignment explanation
Indices: 80922070--80922182 Score: 122
Period size: 52 Copynumber: 2.2 Consensus size: 52
80922060 TAACTTCAAA
* * * * *
80922070 ATTTATATATCGTGTCAATTTAATTTTAAATCTAAAATATTTAACC-TTTAAT
1 ATTTATATAACATGTCAATTTAATTTGAAATCTAAAAAAATTAACCATTT-AT
** *
80922122 ATTTATATAACATGTCAATTTGGTCTTGAAA-CTAAAAAAATTAACCATTTTT
1 ATTTATATAACATGTCAATTTAAT-TTGAAATCTAAAAAAATTAACCATTTAT
80922174 ATTTATATA
1 ATTTATATA
80922183 TTATGTAATT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
52 43 0.84
53 8 0.16
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (52 bp):
ATTTATATAACATGTCAATTTAATTTGAAATCTAAAAAAATTAACCATTTAT
Found at i:80922422 original size:40 final size:40
Alignment explanation
Indices: 80922378--80922460 Score: 139
Period size: 40 Copynumber: 2.1 Consensus size: 40
80922368 AAAAGATACC
80922378 TAGTTCTTCACCATTTGAAGTACAAGGAAAGAAATATATG
1 TAGTTCTTCACCATTTGAAGTACAAGGAAAGAAATATATG
* **
80922418 TAGTTTTTTGCCATTTGAAGTACAAGGAAAGAAATATATG
1 TAGTTCTTCACCATTTGAAGTACAAGGAAAGAAATATATG
80922458 TAG
1 TAG
80922461 GAATTATCTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.33
Consensus pattern (40 bp):
TAGTTCTTCACCATTTGAAGTACAAGGAAAGAAATATATG
Found at i:80922719 original size:21 final size:22
Alignment explanation
Indices: 80922682--80922728 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
80922672 TGTCGCATTA
* *
80922682 AATGGTTGATAAAATAT-TTTG
1 AATGGTTGAAAAAATATGTATG
80922703 AATGGTT-AAAAATATATGTATG
1 AATGGTTGAAAAA-ATATGTATG
80922725 AATG
1 AATG
80922729 ATAACCAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 11 0.50
22 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (22 bp):
AATGGTTGAAAAAATATGTATG
Found at i:80930862 original size:42 final size:42
Alignment explanation
Indices: 80930803--80930966 Score: 175
Period size: 42 Copynumber: 3.9 Consensus size: 42
80930793 TTAGGGTAAT
* * * * *
80930803 TGAGATTTTGTGGAAGACTATATTTGGGATATGGCATCAATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
80930845 TGAGATTTCGTGTAAGACCAAATCTGGGATATGGCATTGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
** * * *
80930887 TGAGGCTTCGTGTAAGACCATAGCTGGGCTATTAGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
80930930 CGAGATTACATGTAAGACCATATCTGAGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
80930967 TGGTACGGTA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 66 0.67
43 32 0.33
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:80933195 original size:15 final size:15
Alignment explanation
Indices: 80933175--80933209 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
80933165 CCATGTGGCT
* *
80933175 CACACGGGCAAGTGC
1 CACACGGCCAAGTGA
80933190 CACACGGCCAAGTGA
1 CACACGGCCAAGTGA
80933205 CACAC
1 CACAC
80933210 CCATATCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.37, G:0.26, T:0.06
Consensus pattern (15 bp):
CACACGGCCAAGTGA
Found at i:80935261 original size:19 final size:17
Alignment explanation
Indices: 80935219--80935270 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
80935209 TTTTTATCAT
80935219 TTATCATTTATTGGGCA
1 TTATCATTTATTGGGCA
*
80935236 ATATCATTTATTGGAAGCA
1 TTATCATTTATTGG--GCA
*
80935255 TTATCATTTACTGGGC
1 TTATCATTTATTGGGC
80935271 TTTGTTAGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 15 0.50
19 15 0.50
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (17 bp):
TTATCATTTATTGGGCA
Found at i:80942906 original size:41 final size:41
Alignment explanation
Indices: 80942845--80943096 Score: 201
Period size: 41 Copynumber: 6.0 Consensus size: 41
80942835 AAAGTACATC
*
80942845 TAGGGGTACCGAAGTACAAACAGGGGCATGTCTGTGCAATT
1 TAGGGGTACCGAAGTACAAACAGGGACATGTCTGTGCAATT
80942886 TAGGGGTACCGAAG-ATCAAACAGGGACACACATGATGTCTGTGCAATT
1 TAGGGGTACCGAAGTA-CAAACAGGG----AC---ATGTCTGTGCAATT
** *
80942934 TAGGGGTACCGAAG-ATCAAACAGGGACA-CACAT-TACAATT
1 TAGGGGTACCGAAGTA-CAAACAGGGACATGTC-TGTGCAATT
* * * * *
80942974 CAGGGGTATCGAAGTACAAACAATGG-CAT-ACATGTGCAAAT
1 TAGGGGTACCGAAGTACAAAC-AGGGACATGTC-TGTGCAATT
* * * *
80943015 TAGGGGTATCGAAGTACAAATAAGGACATGTATGTGCAATT
1 TAGGGGTACCGAAGTACAAACAGGGACATGTCTGTGCAATT
* * * *
80943056 CAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATT
1 TAGGGGTACCGAAGTACAAACAGGGACATGTCTGTGCAATT
80943097 CAGGATTATT
Statistics
Matches: 175, Mismatches: 21, Indels: 30
0.77 0.09 0.13
Matches are distributed among these distances:
40 34 0.19
41 99 0.57
44 2 0.01
45 1 0.01
48 39 0.22
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (41 bp):
TAGGGGTACCGAAGTACAAACAGGGACATGTCTGTGCAATT
Found at i:80942943 original size:48 final size:48
Alignment explanation
Indices: 80942872--80942966 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
80942862 AAACAGGGGC
80942872 ATGTCTGTGCAATTTAGGGGTACCGAAGATCAAACAGGGACACACATG
1 ATGTCTGTGCAATTTAGGGGTACCGAAGATCAAACAGGGACACACATG
80942920 ATGTCTGTGCAATTTAGGGGTACCGAAGATCAAACAGGGACACACAT
1 ATGTCTGTGCAATTTAGGGGTACCGAAGATCAAACAGGGACACACAT
80942967 TACAATTCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (48 bp):
ATGTCTGTGCAATTTAGGGGTACCGAAGATCAAACAGGGACACACATG
Found at i:80962342 original size:24 final size:23
Alignment explanation
Indices: 80962307--80962379 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
80962297 CCGAGGCTAT
*
80962307 ATAACGGAAAGCTCATAAGAGCC
1 ATAACGGGAAGCTCATAAGAGCC
**
80962330 ATAATCGGGAAGCTCATGCGAGCC
1 ATAA-CGGGAAGCTCATAAGAGCC
*
80962354 AATAACGGGTAGCTCCA-AAGAGCC
1 -ATAACGGGAAGCT-CATAAGAGCC
80962378 AT
1 AT
80962380 TAAAAAAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
23 6 0.15
24 29 0.71
25 6 0.15
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (23 bp):
ATAACGGGAAGCTCATAAGAGCC
Found at i:80962448 original size:23 final size:26
Alignment explanation
Indices: 80962422--80962508 Score: 90
Period size: 26 Copynumber: 3.4 Consensus size: 26
80962412 CAGTTTAAGC
*
80962422 GAGCCA-T-ATCGGGAAGCTC-CAGA
1 GAGCCATTAATCGGGAAGCTCACAAA
*
80962445 GAGCCATTAATCTGGAAGCTCACAAA
1 GAGCCATTAATCGGGAAGCTCACAAA
** * *
80962471 GAGCTTTTAATCGAGAAGCTCACATA
1 GAGCCATTAATCGGGAAGCTCACAAA
80962497 GAGCCATATAAT
1 GAGCCAT-TAAT
80962509 AGGACGCTCA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 6 0.12
24 1 0.02
25 11 0.22
26 29 0.57
27 4 0.08
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (26 bp):
GAGCCATTAATCGGGAAGCTCACAAA
Found at i:80962480 original size:26 final size:25
Alignment explanation
Indices: 80962433--80962518 Score: 84
Period size: 26 Copynumber: 3.4 Consensus size: 25
80962423 AGCCATATCG
*
80962433 GGAAGCTC-CAGAGAGCCATTAATC
1 GGAAGCTCACAAAGAGCCATTAATC
**
80962457 TGGAAGCTCACAAAGAGCTTTTAATC
1 -GGAAGCTCACAAAGAGCCATTAATC
* *
80962483 GAGAAGCTCACATAGAGCCATATAATA
1 G-GAAGCTCACAAAGAGCCAT-TAATC
*
80962510 GGACGCTCA
1 GGAAGCTCA
80962519 TAACATTTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
25 9 0.18
26 36 0.72
27 5 0.10
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (25 bp):
GGAAGCTCACAAAGAGCCATTAATC
Found at i:80963015 original size:21 final size:20
Alignment explanation
Indices: 80962986--80963030 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
80962976 AATGAATTTA
*
80962986 ACATTAATTTAATAAAATTC
1 ACATTAATTCAATAAAATTC
* *
80963006 ACATTCAATTCCATCAAATTC
1 ACATT-AATTCAATAAAATTC
80963027 ACAT
1 ACAT
80963031 CTTAGGCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.36
Consensus pattern (20 bp):
ACATTAATTCAATAAAATTC
Found at i:80972918 original size:46 final size:46
Alignment explanation
Indices: 80972851--80973110 Score: 203
Period size: 46 Copynumber: 5.6 Consensus size: 46
80972841 TGTAACCCGC
* * * *
80972851 CCATAAGCAAACTCGGACTCAACTCAATGAACTCGGGTGTACGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTACGCAT
* *
80972897 CCATAAGTGAACTCGGACTCAACTTAACGAGCTCGGATGCCTA-GTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG--TACG---CAT
* * * * *
80972947 -C-TCA-CGAACTTGGACTCAACTCAACGAGTTCGGATGTTCGAAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTACGCAT
*
80972990 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTA-GTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG--TACG---CAT
* * * * * *
80973040 -C-TCA-CGAACTCGGACTTAACTCAACGAGTTCAGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTACGCAT
*
80973083 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGCGAACTCGGACTCAACTCAAC
80973111 AAGTTTGGAT
Statistics
Matches: 167, Mismatches: 29, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
43 5 0.03
44 2 0.01
45 6 0.04
46 83 0.50
47 57 0.34
48 7 0.04
49 2 0.01
50 5 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTACGCAT
Found at i:80972966 original size:47 final size:47
Alignment explanation
Indices: 80972905--80973067 Score: 199
Period size: 47 Copynumber: 3.5 Consensus size: 47
80972895 ATCCATAAGT
*
80972905 GAACTCGGACTCAACTTAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * * * *
80972952 GAACTTGGACTCAACTCAACGAGTTCGGATG-TTCG--A-ATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-C
80972998 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
80973045 GAACTCGGACTTAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
80973068 TTCAGACGTT
Statistics
Matches: 95, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 2 0.02
46 31 0.33
47 52 0.55
48 2 0.02
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:80973024 original size:93 final size:93
Alignment explanation
Indices: 80972860--80973110 Score: 403
Period size: 93 Copynumber: 2.7 Consensus size: 93
80972850 CCCATAAGCA
* ** * * *
80972860 AACTCGGACTCAACTCAATGAACTCGGGTGTACGCATCCATAAGTGAACTCGGACTCAACTTAAC
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80972925 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* *
80972953 AACTTGGACTCAACTCAACGAGTTCGGATGTTCGAATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80973018 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* * *
80973046 AACTCGGACTTAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
80973111 AAGTTTGGAT
Statistics
Matches: 145, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 145 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:80977370 original size:31 final size:32
Alignment explanation
Indices: 80977332--80977394 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
80977322 GTATTTAAGG
80977332 GATGTTTAGAAAGTTATT-AAAGTGAAAATTA
1 GATGTTTAGAAAGTTATTAAAAGTGAAAATTA
80977363 GATGTTTAGAAAGTTATTAAAAGTGAAAATTA
1 GATGTTTAGAAAGTTATTAAAAGTGAAAATTA
80977395 AGGTTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 18 0.58
32 13 0.42
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (32 bp):
GATGTTTAGAAAGTTATTAAAAGTGAAAATTA
Found at i:80988539 original size:48 final size:48
Alignment explanation
Indices: 80988487--80988622 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
80988477 TCGATATGTG
*
80988487 ATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATCTACA
1 ATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACA
* * ***
80988535 ATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCAATATGTG
1 ATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACA
* * * * *
80988583 ATCCAATTTAAGACCATATCCGGGATATGGCATTGGCATC
1 ATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
80988623 CTACCATGTG
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
ATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACA
Found at i:80988549 original size:91 final size:94
Alignment explanation
Indices: 80988394--80988622 Score: 250
Period size: 91 Copynumber: 2.4 Consensus size: 94
80988384 GGTTATGTGT
* * * * ** ****
80988394 TGATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCATCGATATGTAATTTTGTGTAAGACC
1 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTAAGACC
*
80988459 ATAG-CTGGG-C-T-ATTGGCATCGATATG
66 AT-GTCTGGGACATAATTGGCATCAATATG
*
80988485 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATCTACAATCCCATGTAAGACC
1 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTAAGACC
80988550 ATGTCTGGGACATGACATTGGCATCAATATG
66 ATGTCTGGGACAT-A-ATTGGCATCAATATG
* * * * *
80988581 TGATCCAATTTAAGACCATATCCGGGATATGGCATTGGCATC
1 TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATC
80988623 CTACCATGTG
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
90 1 0.01
91 61 0.53
92 1 0.01
93 1 0.01
96 51 0.44
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (94 bp):
TGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCAATATACAATCCCATGTAAGACC
ATGTCTGGGACATAATTGGCATCAATATG
Found at i:80995265 original size:48 final size:48
Alignment explanation
Indices: 80995187--80995558 Score: 443
Period size: 48 Copynumber: 7.8 Consensus size: 48
80995177 ACTGTACTAA
*
80995187 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGTCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
** *
80995235 ATGTGCCTGTGTAAGACCATGTCTAAGACATGGCATCGTCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
80995283 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGT-GATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATAT
* **
80995331 ATGTGCCTGTATAAGACCATGTCCAGGACATGGCATCGGT-GATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATC-GTCGATGATAT
* * *
80995379 ATGTACCTGTGTAAGAACATGTCTAGGG-CATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCT-GGGACATGGCATCGTCGATGATAT
* *
80995427 GTGTG-CTAGTGTAAAACCATGTCTGGGACATGGCATCAG-C-AGTGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATC-GTCGA-TGATAT
* * * *
80995475 GTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
* ** * *
80995523 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
80995559 TGGTACTTTA
Statistics
Matches: 286, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
47 9 0.03
48 270 0.94
49 7 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGTCGATGATAT
Found at i:80996841 original size:22 final size:22
Alignment explanation
Indices: 80996813--80996868 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
80996803 CGGCCTGGGG
80996813 ACACGGGCGTGTCCTTGTGTCC
1 ACACGGGCGTGTCCTTGTGTCC
80996835 ACACGGGCGTGTCCTTGTGTCC
1 ACACGGGCGTGTCCTTGTGTCC
80996857 ACACGGGCGTGT
1 ACACGGGCGTGT
80996869 GACCCTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (22 bp):
ACACGGGCGTGTCCTTGTGTCC
Found at i:81000643 original size:13 final size:13
Alignment explanation
Indices: 81000627--81000652 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81000617 AGAATTATTT
81000627 TTTGAAAATTTTG
1 TTTGAAAATTTTG
81000640 TTTGAAAATTTTG
1 TTTGAAAATTTTG
81000653 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:81005854 original size:40 final size:40
Alignment explanation
Indices: 81005787--81005963 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
81005777 ACCCAAGTAT
*
81005787 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
81005826 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81005866 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
81005906 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
81005946 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
81005964 TTATCATCCG
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 104 0.87
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81014832 original size:40 final size:39
Alignment explanation
Indices: 81014788--81015012 Score: 299
Period size: 40 Copynumber: 5.7 Consensus size: 39
81014778 GCCACTAGCT
*
81014788 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
81014828 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
81014867 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
81014907 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** *
81014947 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
81014987 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
81015013 TATCATCCGA
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
39 40 0.24
40 128 0.76
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:81017256 original size:40 final size:40
Alignment explanation
Indices: 81017189--81017365 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
81017179 ACCCAAGTAT
* *
81017189 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAGATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
81017228 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
81017268 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* * *
81017308 CTTCGGGACATAGCCCGGATATAGCAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
81017348 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
81017366 TTATCATCTG
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 103 0.87
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:81020952 original size:40 final size:40
Alignment explanation
Indices: 81020882--81021019 Score: 190
Period size: 40 Copynumber: 3.5 Consensus size: 40
81020872 AAACCAAGTA
* * ** *
81020882 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGTTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
81020921 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81020961 CCTTCGGGACTTAGCCTGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81021001 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81021020 TTGTCATCCG
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.15
40 76 0.85
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81025746 original size:5 final size:5
Alignment explanation
Indices: 81025736--81025760 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
81025726 CTTGAATCTC
81025736 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
81025761 TAAAATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:81029207 original size:46 final size:46
Alignment explanation
Indices: 81029140--81029232 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
81029130 ATTTCACGAA
* *
81029140 TGACTACCTTTTCGATTCATTTCGACGACAAACACATTTTTGTCGC
1 TGACTACCTCTTCGATTCATTTCGACGACAAACACATTTCTGTCGC
* **
81029186 TGACTATCTCTTCGATTCATTTCGACGACAAGTACATTTCTGTCGC
1 TGACTACCTCTTCGATTCATTTCGACGACAAACACATTTCTGTCGC
81029232 T
1 T
81029233 CAAGCGATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.38
Consensus pattern (46 bp):
TGACTACCTCTTCGATTCATTTCGACGACAAACACATTTCTGTCGC
Found at i:81031258 original size:43 final size:43
Alignment explanation
Indices: 81031149--81031273 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
81031139 AACTAAGACG
* * *
81031149 TCCGAGCTCGTTGAGTGGTCC-AGGTTC-TTAAGATATGTG-GCA
1 TCCGAGCTCGTTGAGTGGTCCGA-GTTCATTATG-GATGCGAGCA
* * *
81031191 TCCGAGCTCGTTAAGAGGTTCGAGTTCATTATGGATGCGAGCA
1 TCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGAGCA
* *
81031234 TCCGAGCTTGTTGAGTGGTCCGAGTTCATAATGGATGCGA
1 TCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
81031274 TTCATGCTGT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 26 0.38
43 43 0.62
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (43 bp):
TCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGAGCA
Found at i:81043453 original size:40 final size:41
Alignment explanation
Indices: 81043373--81043453 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 41
81043363 ACAGGGGTTT
*
81043373 TCACACGGCCTGACACATGCCCGTGTCCATGGCCCGTGTCTC
1 TCACACGGCCTGACACA-GCCCGTGTCCATAGCCCGTGTCTC
*
81043415 TCACATGGCCATGACAC-GCCCGTGTCC-TAGCCCGTGTCT
1 TCACACGGCC-TGACACAGCCCGTGTCCATAGCCCGTGTCT
81043454 AAAAACCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
40 11 0.31
41 10 0.28
42 9 0.25
43 6 0.17
ACGTcount: A:0.15, C:0.40, G:0.23, T:0.22
Consensus pattern (41 bp):
TCACACGGCCTGACACAGCCCGTGTCCATAGCCCGTGTCTC
Found at i:81051629 original size:33 final size:33
Alignment explanation
Indices: 81051587--81051654 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
81051577 TCAAGGCCGC
*
81051587 CATCATAGCCTCAATGGCATCAGT-CCTACCAGT
1 CATCATAGCCTCAATGGAATCA-TCCCTACCAGT
*
81051620 CATCATAGCCTCGATGGAATCATCCCTACCAGT
1 CATCATAGCCTCAATGGAATCATCCCTACCAGT
81051653 CA
1 CA
81051655 GCTTTTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (33 bp):
CATCATAGCCTCAATGGAATCATCCCTACCAGT
Found at i:81053966 original size:20 final size:20
Alignment explanation
Indices: 81053943--81053980 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
81053933 CTTGCAACTC
81053943 ACCATAATCTTTCACAACAT
1 ACCATAATCTTTCACAACAT
* *
81053963 ACCATAGTCTTTCCCAAC
1 ACCATAATCTTTCACAAC
81053981 TTTAACATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.03, T:0.29
Consensus pattern (20 bp):
ACCATAATCTTTCACAACAT
Found at i:81054171 original size:42 final size:42
Alignment explanation
Indices: 81054064--81054172 Score: 120
Period size: 39 Copynumber: 2.7 Consensus size: 42
81054054 AGTACCATCC
* **
81054064 CAATGCCATAT-CCAGATATGGTCTTACATGGGATCTCATAT
1 CAATGCAATATCCCAGATATGGTCTTACATGAAATCTCATAT
* *
81054105 CGATGCCAATAGCCC----ATGGTCTTACATGAAATCTCATAT
1 CAATG-CAATATCCCAGATATGGTCTTACATGAAATCTCATAT
*
81054144 CAATGCTATATCCCAGATATGGTCTTACA
1 CAATGCAATATCCCAGATATGGTCTTACA
81054173 CATAACCTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
38 7 0.13
39 26 0.48
41 4 0.07
42 15 0.28
43 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (42 bp):
CAATGCAATATCCCAGATATGGTCTTACATGAAATCTCATAT
Found at i:81066592 original size:7 final size:7
Alignment explanation
Indices: 81066580--81066614 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
81066570 TCGTAGCCCT
81066580 TTTCATA
1 TTTCATA
81066587 TTTCATA
1 TTTCATA
81066594 TTTCATA
1 TTTCATA
81066601 TTTCATA
1 TTTCATA
81066608 TTTCATA
1 TTTCATA
81066615 ACACCGGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:81066660 original size:31 final size:31
Alignment explanation
Indices: 81066601--81066664 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
81066591 ATATTTCATA
* *
81066601 TTTCATATTTCATAACACCGGGCTGAAGCCT
1 TTTCATATTTCATAACACCAGGCCGAAGCCT
** *
81066632 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACCAGGCCGAAGCCT
81066663 TT
1 TT
81066665 ACTGTAAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACCAGGCCGAAGCCT
Found at i:81066909 original size:24 final size:24
Alignment explanation
Indices: 81066872--81066930 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 24
81066862 CTGGAGGCCT
81066872 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCAAA
*
81066897 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAA
81066921 AGCCCTTTTA
1 AGCCCTTTTA
81066931 CACTTCCTCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 29 0.88
25 4 0.12
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:81067007 original size:20 final size:20
Alignment explanation
Indices: 81066982--81067045 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
81066972 TGATTACATT
81066982 ATGTGCATATCATACATATC
1 ATGTGCATATCATACATATC
*
81067002 ATGTGCATATCATACATGTC
1 ATGTGCATATCATACATATC
*
81067022 ATGTGCATATCATACATACC
1 ATGTGCATATCATACATATC
81067042 ATGT
1 ATGT
81067046 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATGTGCATATCATACATATC
Found at i:81067012 original size:11 final size:11
Alignment explanation
Indices: 81066982--81067034 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
81066972 TGATTACATT
81066982 ATGTGCATATC
1 ATGTGCATATC
*
81066993 A--TACATATC
1 ATGTGCATATC
81067002 ATGTGCATATC
1 ATGTGCATATC
* *
81067013 A--TACATGTC
1 ATGTGCATATC
81067022 ATGTGCATATC
1 ATGTGCATATC
81067033 AT
1 AT
81067035 ACATACCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.47
11 17 0.53
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (11 bp):
ATGTGCATATC
Found at i:81067114 original size:25 final size:25
Alignment explanation
Indices: 81067082--81067129 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
81067072 ATACGTAAAC
* * *
81067082 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
81067107 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
81067130 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:81074707 original size:31 final size:31
Alignment explanation
Indices: 81074654--81074717 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
81074644 CCTTTTCATA
*
81074654 TTTCATATTTCACAACACTGGGCTGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
* ** *
81074685 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCACAACACTGGGCCGAAGCCT
81074716 TT
1 TT
81074718 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCACAACACTGGGCCGAAGCCT
Found at i:81074962 original size:24 final size:24
Alignment explanation
Indices: 81074925--81075030 Score: 178
Period size: 24 Copynumber: 4.4 Consensus size: 24
81074915 CTAGAGGCCT
*
81074925 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
81074950 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
81074974 AGCCCTTTAAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
81074998 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
81075021 AGCCCTTTTA
1 AGCCCTTTTA
81075031 CACTTCCTCC
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 22 0.29
24 51 0.66
25 4 0.05
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:81075010 original size:47 final size:48
Alignment explanation
Indices: 81074925--81075028 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 48
81074915 CTAGAGGCCT
*
81074925 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTAAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
*
81074974 AGCCCTTTAAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTAAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
81075021 AGCCCTTT
1 AGCCCTTT
81075029 TACACTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
47 26 0.49
48 23 0.43
49 4 0.08
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (48 bp):
AGCCCTTTAAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
Found at i:81075145 original size:20 final size:20
Alignment explanation
Indices: 81075079--81075137 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
81075069 TTATGATTAC
81075079 ATCATGTGCATATCATACAA
1 ATCATGTGCATATCATACAA
*
81075099 ATCATGTGCATATCATACAC
1 ATCATGTGCATATCATACAA
*
81075119 GTCATGTGCATATCATACA
1 ATCATGTGCATATCATACA
81075138 TACCATGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAA
Found at i:81077103 original size:43 final size:44
Alignment explanation
Indices: 81077040--81077206 Score: 186
Period size: 43 Copynumber: 3.9 Consensus size: 44
81077030 AGCTCGTACA
* * *
81077040 ATGCC-ATATCCCAGA-TATGGTCTTACATGTTATCTCATATCG
1 ATGCCAATGTCCCAGACTATGGTCTTACATGTAATCACATATCG
* * *
81077082 ATGCCAATAG-CCCA-ACTATGGTCTTACACGAAATCACATAACG
1 ATGCCAAT-GTCCCAGACTATGGTCTTACATGTAATCACATATCG
* * *
81077125 ATGCCAATGTCCCAGA-TCTGGTCTTACATGTAATAACA-ATACA
1 ATGCCAATGTCCCAGACTATGGTCTTACATGTAATCACATAT-CG
81077168 ATGCCAATGTCCCAGAC-ATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACTATGGTCTTACATGTAATCACAT
81077207 CTCGGCAATC
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
42 8 0.08
43 94 0.91
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACTATGGTCTTACATGTAATCACATATCG
Found at i:81077149 original size:86 final size:85
Alignment explanation
Indices: 81077040--81077206 Score: 205
Period size: 86 Copynumber: 2.0 Consensus size: 85
81077030 AGCTCGTACA
* ** *
81077040 ATGCCATATCCCAGATATGGTCTTACATGTTATCTC-ATATCGATGCCAATAG-CCCA-ACTATG
1 ATGCCATATCCCAGATATGGTCTTACATGTAATAACAATA-CAATGCCAAT-GTCCCAGAC-ATG
81077102 GTCTTACACGAAATCACATAACG
63 GTCTTACACGAAATCACATAACG
* *
81077125 ATGCCAATGTCCCAGATCTGGTCTTACATGTAATAACAATACAATGCCAATGTCCCAGACATGGT
1 ATGCC-ATATCCCAGATATGGTCTTACATGTAATAACAATACAATGCCAATGTCCCAGACATGGT
* *
81077190 CTTACATGTAATCACAT
65 CTTACACGAAATCACAT
81077207 CTCGGCAATC
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
85 6 0.09
86 59 0.84
87 5 0.07
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACATGTAATAACAATACAATGCCAATGTCCCAGACATGGTC
TTACACGAAATCACATAACG
Found at i:81080594 original size:24 final size:24
Alignment explanation
Indices: 81080562--81080611 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
81080552 GACTCTAGTA
* *
81080562 CCATTATCGATGGCAACAACGATG
1 CCATCATCGATGCCAACAACGATG
* *
81080586 CCATCATCGATGCCAATATCGATG
1 CCATCATCGATGCCAACAACGATG
81080610 CC
1 CC
81080612 CGGGTCAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (24 bp):
CCATCATCGATGCCAACAACGATG
Found at i:81082542 original size:21 final size:20
Alignment explanation
Indices: 81082513--81082557 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
81082503 AAGATTATTA
*
81082513 AATA-TTAAAATATAAATAT
1 AATATTTAAAATATAAAAAT
*
81082532 ATATATTTAAAATTTAAAAAT
1 A-ATATTTAAAATATAAAAAT
81082553 AATAT
1 AATAT
81082558 GGGCTGACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 7 0.32
21 14 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATATTTAAAATATAAAAAT
Found at i:81085693 original size:48 final size:48
Alignment explanation
Indices: 81085622--81085810 Score: 272
Period size: 48 Copynumber: 3.9 Consensus size: 48
81085612 ACTCGAAAGT
* *
81085622 CTCGCACCCTAGGTGCCAATATCATGGCCCGAAGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
**
81085669 GCTCGCACCCGAAGTGCCAATATCATGGCTTGAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
81085718 CTCGCACCCAAAGTGCCAATATCATGGCCTGAAGCCAAATCAAAGTAA
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
* * *
81085766 CTCGCACCTGAAGTGCTAATATCATGGCTCGAAGCCAAATCAATG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATG
81085811 AAGCTCCTAA
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
48 125 0.98
49 2 0.02
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:81088685 original size:16 final size:16
Alignment explanation
Indices: 81088664--81088698 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
81088654 ATGTATCGGC
*
81088664 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
81088680 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
81088696 AAA
1 AAA
81088699 TGCCAAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.20, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:81088977 original size:29 final size:29
Alignment explanation
Indices: 81088931--81089030 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
81088921 AATGTGACTA
81088931 GGCCTAATGGGCCATATAAATATGATTTG
1 GGCCTAATGGGCCATATAAATATGATTTG
* * ** *
81088960 GGCGTAATGGGCCATATACAGGTTATTTG
1 GGCCTAATGGGCCATATAAATATGATTTG
*
81088989 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATATGATTTG
*
81089017 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
81089031 GATACAGGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
28 16 0.27
29 43 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATATGATTTG
Found at i:81089057 original size:57 final size:58
Alignment explanation
Indices: 81088934--81089047 Score: 151
Period size: 57 Copynumber: 2.0 Consensus size: 58
81088924 GTGACTAGGC
* * ***
81088934 CTAATGGGCCATATAAATATGATTTGGGCGTAATGGGCCATATACAGGTTATTTGGGC
1 CTAATGGGCCATATAAATATGATTTGGGCGTAATGGGCCAGATACAGGTTATGTGAAA
* *
81088992 CTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGG-TATGTGAAA
1 CTAATGGGCCATATAAATATGATTTGGGCGTAATGGGCCAGATACAGGTTATGTGAAA
81089048 TTGTTTGGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
56 5 0.10
57 23 0.47
58 21 0.43
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (58 bp):
CTAATGGGCCATATAAATATGATTTGGGCGTAATGGGCCAGATACAGGTTATGTGAAA
Found at i:81089770 original size:19 final size:19
Alignment explanation
Indices: 81089746--81089785 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
81089736 CCCCTTTTTT
81089746 ATTTTATTTTCAGATTGTA
1 ATTTTATTTTCAGATTGTA
*
81089765 ATTTTATTTTTAGATTGTA
1 ATTTTATTTTCAGATTGTA
81089784 AT
1 AT
81089786 AAGGTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.60
Consensus pattern (19 bp):
ATTTTATTTTCAGATTGTA
Found at i:81093126 original size:153 final size:153
Alignment explanation
Indices: 81092845--81093148 Score: 563
Period size: 153 Copynumber: 2.0 Consensus size: 153
81092835 TTGGACTAAG
81092845 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
1 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
* * *
81092910 AGCTAAAATGCCGAAATTTTGGCTACGGTAGTCTTGCGAGTGTGCGAACACTCGTAAGGGGGAGA
66 AGCTAAAATGCCGAAAGTTTGGCTACGATAGTCTTGCGAGTGTGCGAACACTCGTAAGAGGGAGA
*
81092975 TCGATAGGTTGGCTGACGCCCGT
131 CCGATAGGTTGGCTGACGCCCGT
81092998 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
1 GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
81093063 AGCTAAAATGCCGAAAGTTTGGCTACGATAGTCTTGCGAGTGTGCGAACACTCGTAAGAGGGAGA
66 AGCTAAAATGCCGAAAGTTTGGCTACGATAGTCTTGCGAGTGTGCGAACACTCGTAAGAGGGAGA
*
81093128 CCGATAGGTTGGCTGAGGCCC
131 CCGATAGGTTGGCTGACGCCC
81093149 ACGGGCAATT
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 146 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.23
Consensus pattern (153 bp):
GGAATCGCAGGACGCTTGCTTACCAGGTGTGTACGTACACTACACACACATTATGTATCGGCAAA
AGCTAAAATGCCGAAAGTTTGGCTACGATAGTCTTGCGAGTGTGCGAACACTCGTAAGAGGGAGA
CCGATAGGTTGGCTGACGCCCGT
Found at i:81093399 original size:28 final size:29
Alignment explanation
Indices: 81093290--81093403 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
81093280 TGAGCATGAT
* *
81093290 TATGAATGTGA-CTGGGCCTAACGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
81093318 TATAAATGTAATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
81093347 TAT-ACAGGTGATTTGGGCCTAATGGGCCA
1 TATGA-ATGTGATTTGGGCCTAATGGGCCA
* *
81093376 TATGAATATGA-TTGGGCTTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
81093404 GATCAGGTAT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:81100303 original size:31 final size:31
Alignment explanation
Indices: 81100268--81100329 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
81100258 AATATCTGTC
81100268 CTCACATTCGTTCTTTCCAAGTAGTATACAA
1 CTCACATTCGTTCTTTCCAAGTAGTATACAA
*
81100299 CTCACATTTGTTCTTTCCAAGTAGTATACAA
1 CTCACATTCGTTCTTTCCAAGTAGTATACAA
81100330 TTGTAAAATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (31 bp):
CTCACATTCGTTCTTTCCAAGTAGTATACAA
Found at i:81105999 original size:21 final size:21
Alignment explanation
Indices: 81105960--81105999 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
81105950 TGACTGAATG
* *
81105960 ATATCTGTACTGAGCATATTA
1 ATATCTGAACTGAACATATTA
*
81105981 ATATCTGAACTGAATATAT
1 ATATCTGAACTGAACATAT
81106000 GTACTGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (21 bp):
ATATCTGAACTGAACATATTA
Found at i:81114048 original size:24 final size:26
Alignment explanation
Indices: 81113994--81114051 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
81113984 AATTCCCCTT
*
81113994 TTCTCTCCCCTTATCCCTCTCCTAAA
1 TTCTCTCCCCTAATCCCTCTCCTAAA
* **
81114020 ATCTCTCCCC-AAT-CCTCTCCTTGA
1 TTCTCTCCCCTAATCCCTCTCCTAAA
81114044 TTCTCTCC
1 TTCTCTCC
81114052 ACATAACACT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 16 0.59
25 2 0.07
26 9 0.33
ACGTcount: A:0.14, C:0.47, G:0.02, T:0.38
Consensus pattern (26 bp):
TTCTCTCCCCTAATCCCTCTCCTAAA
Found at i:81117664 original size:216 final size:217
Alignment explanation
Indices: 81117290--81117726 Score: 786
Period size: 216 Copynumber: 2.0 Consensus size: 217
81117280 GGTGAAGTAT
81117290 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
1 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
*
81117355 AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCATTTGGCCGATTTTCTAAAG
66 AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTAAAG
* *
81117420 TTTTGCGACACATTTAAAATCAATGGCGTTTCTGATGATGCCATTCGTCTTTAGTTATTTACCTT
131 TTTTGCGACACATTTAAAATCAATGGCGTTTCTAATGATGCCATTCGTCTTCAGTTATTTACCTT
81117485 TTC-TAAGGAATAAGGCTAAAC
196 TTCATAAGGAATAAGGCTAAAC
81117506 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
1 AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
* * * *
81117571 AATTTGTTCAGTTTGATGGTTTGTAGGAAGAGGATCCAAACAATCACTTGGCGGATTTTCTGAAG
66 AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTAAAG
*
81117636 TTTTGCGACACATTTAAAATCAATGGCGTTTCTAATGATGCCATTCGTCTTCAGTTATTTCCCTT
131 TTTTGCGACACATTTAAAATCAATGGCGTTTCTAATGATGCCATTCGTCTTCAGTTATTTACCTT
81117701 TTCATTAAGGAATAAGGCTAAAC
196 TTCA-TAAGGAATAAGGCTAAAC
81117724 AGT
1 AGT
81117727 GGTTGAACTC
Statistics
Matches: 211, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
216 190 0.90
218 21 0.10
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (217 bp):
AGTTAGGCCTGCTATTGCTGCAAATAATTTTGAACTGAAACCTAACACGATTCAAATGATACAAC
AATTTGTTCAGTTTGATAGTTTGCAGGAAGAGGATCCAAACAATCACTTGGCCGATTTTCTAAAG
TTTTGCGACACATTTAAAATCAATGGCGTTTCTAATGATGCCATTCGTCTTCAGTTATTTACCTT
TTCATAAGGAATAAGGCTAAAC
Found at i:81126262 original size:49 final size:51
Alignment explanation
Indices: 81126136--81126279 Score: 175
Period size: 49 Copynumber: 2.9 Consensus size: 51
81126126 TCTATTGTGA
* * *
81126136 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
* * * * * * **
81126187 GATCACGTCTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTA-T-T
1 GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
81126236 GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
81126280 TAGCTTCGGC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 39 0.51
50 1 0.01
51 37 0.48
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (51 bp):
GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAACTGT
Found at i:81128359 original size:48 final size:48
Alignment explanation
Indices: 81128277--81128432 Score: 156
Period size: 48 Copynumber: 3.2 Consensus size: 48
81128267 CACTGGCCTA
* * * *
81128277 AAGCCAAATCAATG-AAGCTCACACTCGAAGTGCCAATATCATGGGCCA-
1 AAGCCAAATCAAAGTAA-CTCGCACCCAAAGTGCCAATATCATGGG-CAG
* * * *
81128325 AATCCAAATTAATGTAACTCGCACCTAAAGTGCCAATATCAT-GGCATG
1 AAGCCAAATCAAAGTAACTCGCACCCAAAGTGCCAATATCATGGGCA-G
* * *
81128373 AAGCCAAATCAAAGTAACTTGCACCCAAAGTGCTAATATCATGGCCAG
1 AAGCCAAATCAAAGTAACTCGCACCCAAAGTGCCAATATCATGGGCAG
*
81128421 AAGACAAATCAA
1 AAGCCAAATCAA
81128433 TGAAGCTCTT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
48 81 0.90
49 5 0.06
ACGTcount: A:0.40, C:0.24, G:0.16, T:0.19
Consensus pattern (48 bp):
AAGCCAAATCAAAGTAACTCGCACCCAAAGTGCCAATATCATGGGCAG
Found at i:81129855 original size:17 final size:17
Alignment explanation
Indices: 81129835--81129869 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81129825 AAAAATCATA
*
81129835 AAAATTATAAAAGTTTT
1 AAAATTACAAAAGTTTT
*
81129852 AAAATTACAAAATTTTT
1 AAAATTACAAAAGTTTT
81129869 A
1 A
81129870 TTTAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (17 bp):
AAAATTACAAAAGTTTT
Found at i:81132334 original size:16 final size:17
Alignment explanation
Indices: 81132313--81132346 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
81132303 CTAGTAAAAA
81132313 ATATTTTGAAG-TTATG
1 ATATTTTGAAGTTTATG
*
81132329 ATATTTTTAAGTTTATG
1 ATATTTTGAAGTTTATG
81132346 A
1 A
81132347 GGTCTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (17 bp):
ATATTTTGAAGTTTATG
Found at i:81132994 original size:18 final size:17
Alignment explanation
Indices: 81132964--81132997 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
81132954 GATTCGCATA
*
81132964 TTTTTTAGTAAAACCTC
1 TTTTTGAGTAAAACCTC
81132981 TTTTTGAGTGAAAACCT
1 TTTTTGAGT-AAAACCT
81132998 TCAATTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTTTGAGTAAAACCTC
Found at i:81141793 original size:26 final size:26
Alignment explanation
Indices: 81141764--81141871 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
81141754 TGGCACAAAT
81141764 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
* *
81141790 TGATAATGGATCAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81141816 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
81141842 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
81141868 TGAT
1 TGAT
81141872 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
26 73 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:81143355 original size:28 final size:28
Alignment explanation
Indices: 81143313--81143387 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 28
81143303 AAAAGCAGCT
* * *
81143313 AAATTACTATAATACCCCTATGTATG-GA
1 AAATTACTGTTATACCCCTATG-ATGCAA
* *
81143341 AAATTACTGTTATACCTCT-TGGTGCAA
1 AAATTACTGTTATACCCCTATGATGCAA
*
81143368 AAATTACCGTTATACCCCTA
1 AAATTACTGTTATACCCCTA
81143388 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.05
27 20 0.53
28 16 0.42
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (28 bp):
AAATTACTGTTATACCCCTATGATGCAA
Found at i:81143575 original size:54 final size:53
Alignment explanation
Indices: 81143493--81143633 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 53
81143483 AGGAAGCGTC
81143493 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
81143547 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
81143601 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
81143634 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 7 0.08
54 76 0.92
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:81143644 original size:27 final size:27
Alignment explanation
Indices: 81143493--81143651 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
81143483 AGGAAGCGTC
*
81143493 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
81143520 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
81143547 CTGGTGGCTATGCCACGATTATCTG-AT
1 CTGGTGGCTCTGCCAC-AATATCTGTAT
81143574 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
81143601 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
81143628 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
81143652 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:81147495 original size:40 final size:40
Alignment explanation
Indices: 81147448--81147542 Score: 129
Period size: 40 Copynumber: 2.4 Consensus size: 40
81147438 AGCGTTTTAA
*
81147448 TGAAAAACACCGCTAAAGATCCAGCATTAGC-AGCACTTTT
1 TGAAAAACACCGCTAAAGATCCAGCACTAGCGA-CACTTTT
* *
81147488 TGAAAAACGCCGCTAAAGATCGAGCACTAGCGACACTTTT
1 TGAAAAACACCGCTAAAGATCCAGCACTAGCGACACTTTT
* *
81147528 TAAAAAACTCCGCTA
1 TGAAAAACACCGCTA
81147543 TAGGTCACCT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
40 48 0.98
41 1 0.02
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.21
Consensus pattern (40 bp):
TGAAAAACACCGCTAAAGATCCAGCACTAGCGACACTTTT
Found at i:81148157 original size:22 final size:24
Alignment explanation
Indices: 81148107--81148157 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
81148097 ATATTGTTAA
81148107 GGGTTTAAGGTTTATGAGATACTAT
1 GGGTTTAAGGTTTATGAGATA-TAT
81148132 ---TTTAAGGTTTATG-GAT-TAT
1 GGGTTTAAGGTTTATGAGATATAT
81148151 GGGTTTA
1 GGGTTTA
81148158 GGGATTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 9
0.72 0.00 0.28
Matches are distributed among these distances:
19 3 0.13
21 3 0.13
22 17 0.74
ACGTcount: A:0.25, C:0.02, G:0.27, T:0.45
Consensus pattern (24 bp):
GGGTTTAAGGTTTATGAGATATAT
Found at i:81148216 original size:21 final size:21
Alignment explanation
Indices: 81148173--81148222 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
81148163 TATAGTTTAA
* *
81148173 GGTTTATGGTTTAAGAGTTGG
1 GGTTTAAGGTTTAAGAGTCGG
* *
81148194 GGTTTAAGGTTTAGGGGTCGG
1 GGTTTAAGGTTTAAGAGTCGG
*
81148215 GGGTTAAG
1 GGTTTAAG
81148223 AGTTAGAGGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.02, G:0.44, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGAGTCGG
Found at i:81148464 original size:21 final size:21
Alignment explanation
Indices: 81148435--81148474 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81148425 GAGTTACTAT
*
81148435 TTTAAAGTTTATGATTTAGGG
1 TTTAAAGTTTAGGATTTAGGG
*
81148456 TTTAGAGTTTAGGATTTAG
1 TTTAAAGTTTAGGATTTAG
81148475 TGTGCAATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
TTTAAAGTTTAGGATTTAGGG
Found at i:81148603 original size:25 final size:23
Alignment explanation
Indices: 81148554--81148607 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
81148544 ACATCATTTT
*
81148554 ATATTTATATATTGCATACATAA
1 ATATTTATATATTGCATACAAAA
* *
81148577 ATATTTATATATATTCAATATAAAA
1 ATATTTATATAT-TGC-ATACAAAA
81148602 ATATTT
1 ATATTT
81148608 TGATGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 12 0.46
24 2 0.08
25 12 0.46
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (23 bp):
ATATTTATATATTGCATACAAAA
Found at i:81148962 original size:6 final size:7
Alignment explanation
Indices: 81148945--81148970 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
81148935 AAATCTTCAA
81148945 AAAAATT
1 AAAAATT
81148952 AAAAATT
1 AAAAATT
81148959 AAAAATT
1 AAAAATT
81148966 AAAAA
1 AAAAA
81148971 AATAAAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:81148970 original size:15 final size:15
Alignment explanation
Indices: 81148945--81148986 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
81148935 AAATCTTCAA
*
81148945 AAAAATT-AAAAATT
1 AAAAATTAAAAAAAT
81148959 AAAAATTAAAAAAAT
1 AAAAATTAAAAAAAT
81148974 AAAGAACTTAAAA
1 AAA-AA-TTAAAA
81148987 TTTTAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 7 0.29
15 9 0.38
16 2 0.08
17 6 0.25
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAAATTAAAAAAAT
Found at i:81149914 original size:26 final size:26
Alignment explanation
Indices: 81149878--81149938 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
81149868 TAAACCAAAT
* * *
81149878 TTTTCAAAAACACTTCTGAAAAGCAC
1 TTTTCCAAAACAATTCTCAAAAGCAC
* *
81149904 TTTTCCAAAACAATTTTCTAAAGCAC
1 TTTTCCAAAACAATTCTCAAAAGCAC
81149930 TTTT-CAAAA
1 TTTTCCAAAA
81149939 TAACTGTTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 5 0.17
26 25 0.83
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (26 bp):
TTTTCCAAAACAATTCTCAAAAGCAC
Found at i:81149951 original size:25 final size:26
Alignment explanation
Indices: 81149897--81149951 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
81149887 ACACTTCTGA
*
81149897 AAAGCACTTTTCCAAAACAATTTTCT
1 AAAGCACTTTTCCAAAACAATGTTCT
*
81149923 AAAGCACTTTT-CAAAATAACTGTTC-
1 AAAGCACTTTTCCAAAACAA-TGTTCT
81149948 AAAG
1 AAAG
81149952 GATCGTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (26 bp):
AAAGCACTTTTCCAAAACAATGTTCT
Done.