Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 24 of 362
Found at i:6993883 original size:15 final size:14
Alignment explanation
Indices: 6993847--6993885 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
6993837 ATACGTATGA
*
6993847 AAAATAATGATAGT
1 AAAATAATAATAGT
6993861 AAATATAATAATAGT
1 AAA-ATAATAATAGT
6993876 AATAATAATA
1 AA-AATAATA
6993886 GTGGAATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 18 0.82
16 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (14 bp):
AAAATAATAATAGT
Found at i:6994107 original size:10 final size:11
Alignment explanation
Indices: 6994060--6994119 Score: 52
Period size: 11 Copynumber: 5.2 Consensus size: 11
6994050 TATATAAAAG
6994060 TATATACATACA
1 TATATACATA-A
6994072 TATATGTACATAA
1 TATA--TACATAA
*
6994085 AATATACACTAA
1 TATATACA-TAA
6994097 TATATA-ATAA
1 TATATACATAA
6994107 TAATATA-ATAA
1 T-ATATACATAA
6994118 TA
1 TA
6994120 ATATTAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
10 5 0.12
11 15 0.36
12 12 0.29
13 4 0.10
14 6 0.14
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (11 bp):
TATATACATAA
Found at i:6994114 original size:11 final size:11
Alignment explanation
Indices: 6994081--6994123 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
6994071 ATATATGTAC
6994081 ATAA-AATATA
1 ATAATAATATA
6994091 CACTAAT-ATATA
1 -A-TAATAATATA
6994103 ATAATAATATA
1 ATAATAATATA
6994114 ATAATAATAT
1 ATAATAATAT
6994124 TAAAATGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.14
11 17 0.59
12 8 0.28
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (11 bp):
ATAATAATATA
Found at i:6995105 original size:43 final size:43
Alignment explanation
Indices: 6995042--6995126 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 43
6995032 TGAGTTCCTG
*
6995042 ATCTGCTTCTTCGATCTGTTCC-CATAAACACAGGGATGCCAA
1 ATCTGCTTCTTCAATCTGTTCCTCATAAACACAGGGATGCCAA
*
6995084 ATCTGCTGTCTTCAA-CTTGTTCCTTATAAACACAGGGATGCCA
1 ATCTGCT-TCTTCAATC-TGTTCCTCATAAACACAGGGATGCCA
6995127 TGCTGAAATC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 8 0.21
43 12 0.32
44 18 0.47
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (43 bp):
ATCTGCTTCTTCAATCTGTTCCTCATAAACACAGGGATGCCAA
Found at i:6995854 original size:205 final size:205
Alignment explanation
Indices: 6995180--6995967 Score: 1205
Period size: 205 Copynumber: 3.9 Consensus size: 205
6995170 AGATCTATTT
* * * * * * *
6995180 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * * *
6995245 GTGAAAGCCAAATCAACTATG-ATTCGATTTGCTCCTTGTAAGCATAAAGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
6995309 GGATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
6995374 AGATGCCAAA
196 AGATGCCAAA
* * *
6995384 CTTTGATTCGTTCTCTGACGATACAGAGATGACAAATCATCTTAGATTTGCTTTC-TCGTAATCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAATCA
* *
6995448 CGTGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCGTGTAAACACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* **
6995513 TGGATCTGCTTCAG--TGAAATTGTCTGAAGGTGAGATCTGC--TGTGTCTGCTCTCCATCAAAG
130 TGGATCCGCTTCAGCAT-AAA-CATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAG
6995574 TGAAGATGCCAAA
193 TGAAGATGCCAAA
6995587 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * * *
6995652 ATGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* * *
6995717 GGATCTGCTTCAGCGA-AATCATCTAAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
131 GGATCCGCTTCAGC-ATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
6995781 AAGATGCCAAA
195 AAGATGCCAAA
*
6995792 CTTC-ATTTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCA
1 CTTCGA-TTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCA
*
6995856 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
*
6995921 TGGATCCGCTTCAGCATAAACATCTGAAGGCGAGATCTGCTATGTGT
130 TGGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGT
6995968 GGCCTATTAC
Statistics
Matches: 535, Mismatches: 37, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
202 3 0.01
203 184 0.34
204 82 0.15
205 266 0.50
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (205 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGCATAAACATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
AGATGCCAAA
Found at i:6995934 original size:408 final size:407
Alignment explanation
Indices: 6995180--6995934 Score: 1228
Period size: 408 Copynumber: 1.9 Consensus size: 407
6995170 AGATCTATTT
* * * *
6995180 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
6995245 GTGAAAGCCAAATCAACTATGATTCGATTTGCTCCTTGTAAGCATAAAGATGCCAAACCATCTTG
66 ATGAAAGCCAAATCAACTATGATTCAATTTGCTCCTTGTAAACACAAAGATGCCAAACCATCTTG
*
6995310 GATCCGCTTCAGCATAAACATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
131 GATCCGCTTCAGCATAAACATCCAAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
* *
6995375 GATGCCAAACTTTGATTCGTTCTCTGACGATACAGAGATGACAAATCATCTTAGATTTGCTTTCT
196 GATGCCAAACTTTCATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCT
*
6995440 CGTAATCACGTGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCGTGTAAACACAAGGATGCCA
261 CGTAATCACGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCGTGTAAACACAAGGATGCCA
*
6995505 AACCATCTTGGATCTGCTTCAGTGAAATTGTCTGAAGGTGAGATCTGCTGTGTCTGCTCTCCATC
326 AACCATCTTGGATCCGCTTCAGTGAAATTGTCTGAAGGTGAGATCTGCTGTGTCTGCTCTCCATC
6995570 AAAGTGAAGATGCCAAA
391 AAAGTGAAGATGCCAAA
* * *
6995587 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAGCAC
* * * *
6995652 ATGAAAGCCAAATCAGCTATGTCTTCAATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 ATGAAAGCCAAATCAACTATG-ATTCAATTTGCTCCTTGTAAACACAAAGATGCCAAACCATCTT
* * *
6995717 GGATCTGCTTCAGCGA-AATCATCTAAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
130 GGATCCGCTTCAGC-ATAAACATCCAAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTG
6995781 AAGATGCCAAAC-TTCATTTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGC-T
194 AAGATGCCAAACTTTCA-TTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTT
* *
6995844 TCATCGTAATCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGAT
258 TC-TCGTAATCACGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCGTGTAAACACAAGGAT
6995909 GCCAAACCATCTTGGATCCGCTTCAG
322 GCCAAACCATCTTGGATCCGCTTCAG
6995935 CATAAACATC
Statistics
Matches: 319, Mismatches: 25, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
407 83 0.26
408 235 0.74
409 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (407 bp):
CTTCGATTCGTTCCCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAACGTAAGCAC
ATGAAAGCCAAATCAACTATGATTCAATTTGCTCCTTGTAAACACAAAGATGCCAAACCATCTTG
GATCCGCTTCAGCATAAACATCCAAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGAA
GATGCCAAACTTTCATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTTCT
CGTAATCACGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCGTGTAAACACAAGGATGCCA
AACCATCTTGGATCCGCTTCAGTGAAATTGTCTGAAGGTGAGATCTGCTGTGTCTGCTCTCCATC
AAAGTGAAGATGCCAAA
Found at i:7003917 original size:13 final size:14
Alignment explanation
Indices: 7003889--7003918 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7003879 TTCCAGATTT
7003889 TCTTTTCTACCCTC
1 TCTTTTCTACCCTC
7003903 TCTTTTCTA-CCTC
1 TCTTTTCTACCCTC
7003916 TCT
1 TCT
7003919 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.07, C:0.40, G:0.00, T:0.53
Consensus pattern (14 bp):
TCTTTTCTACCCTC
Found at i:7004004 original size:15 final size:14
Alignment explanation
Indices: 7003962--7004011 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7003952 ATAACTTTGA
*
7003962 ATGCAAATGATGTG
1 ATGCAAATGATGAG
7003976 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
7003991 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
7004005 ATGCAAA
1 ATGCAAA
7004012 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:7007831 original size:22 final size:23
Alignment explanation
Indices: 7007806--7007870 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
7007796 ATAAGTAAAG
7007806 AAAATATAATAACAATAATAG-A
1 AAAATATAATAACAATAATAGTA
* * *
7007828 AAAATACAACAATAATAATAGTA
1 AAAATATAATAACAATAATAGTA
7007851 AAAGATATAATAAC-ATAATA
1 AAA-ATATAATAACAATAATA
7007871 ATATAATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 18 0.51
23 10 0.29
24 7 0.20
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (23 bp):
AAAATATAATAACAATAATAGTA
Found at i:7007844 original size:3 final size:3
Alignment explanation
Indices: 7007838--7008054 Score: 60
Period size: 3 Copynumber: 73.3 Consensus size: 3
7007828 AAAATACAAC
* * * *
7007838 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
7007881 AAT AGT AAC AAT -AT GAC CAT AAT AGT AAA AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * **
7007925 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
7007969 -CT ATT AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT
1 AAT AAT AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* *
7008014 AAT AAT AA- AAT AAT AAGT AAC AAT AAT AAAT TAT AAT AAT A
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
7008055 GTGATGAGAA
Statistics
Matches: 153, Mismatches: 42, Indels: 38
0.66 0.18 0.16
Matches are distributed among these distances:
2 20 0.13
3 116 0.76
4 17 0.11
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7008024 original size:35 final size:34
Alignment explanation
Indices: 7007945--7008054 Score: 91
Period size: 36 Copynumber: 3.1 Consensus size: 34
7007935 AAAGTAGTGC
* *
7007945 TAATAATAATAATAATAATATAATCTATTAAGTTA
1 TAATAA-AATAATAATAATATAATATATTAAGTAA
* *
7007980 TAATGAAAATAATGATAATGATGATATATT-AGATAA
1 TAAT-AAAATAATAATAAT-ATAATATATTAAG-TAA
* *
7008016 TAATAAAATAATAAGTAACAATAATAAATT-A-TAA
1 TAATAAAATAATAA-TAA-TATAATATATTAAGTAA
7008050 TAATA
1 TAATA
7008055 GTGATGAGAA
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
34 8 0.13
35 26 0.42
36 28 0.45
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (34 bp):
TAATAAAATAATAATAATATAATATATTAAGTAA
Found at i:7008073 original size:16 final size:16
Alignment explanation
Indices: 7008054--7008085 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7008044 TTATAATAAT
7008054 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7008070 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7008086 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7008219 original size:16 final size:16
Alignment explanation
Indices: 7008190--7008227 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7008180 TATACGTATG
*
7008190 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
7008205 AAAATATAATAATAGT
1 AAAATATAATAATAGT
7008221 AATAATA
1 AA-AATA
7008228 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:7008454 original size:3 final size:3
Alignment explanation
Indices: 7008440--7008472 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
7008430 AAATATACAC
7008440 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
7008473 TTAAAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7009463 original size:44 final size:43
Alignment explanation
Indices: 7009399--7009484 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 43
7009389 TGAGTTCCTG
*
7009399 ATCTGCTTCTTCGATCTGTTCCCCATAAACACAGGGATGCCAA
1 ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGGATGCCAA
**
7009442 ATCTGCTGTCTTCAA-CTTGTTCCTTATAAACACAGGGATGCCA
1 ATCTGCT-TCTTCAATC-TGTTCCCCATAAACACAGGGATGCCA
7009485 TGCTGAAATC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 8 0.21
44 30 0.79
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (43 bp):
ATCTGCTTCTTCAATCTGTTCCCCATAAACACAGGGATGCCAA
Found at i:7009981 original size:203 final size:204
Alignment explanation
Indices: 7009538--7010323 Score: 1185
Period size: 203 Copynumber: 3.9 Consensus size: 204
7009528 AGATCTATTT
* * * * * * *
7009538 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTAACGTAAGCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * * *
7009603 GTGAAAGCCAAATCAACTATG-ATTCGATTTGCTCCTTGTAAGCATAAAGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
7009667 GGATCCGCTTCAGCAT-AAA-CATCCGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGT
131 GGATCCGCTTCAG--TGAAATCATCTGAAGGTGAGATCTGC-ATGTGTCTGCTCTCCATCAAAGT
7009730 GAAGATGCCAAA
193 GAAGATGCCAAA
* * *
7009742 CTTTGATTCGTTCTCTGACGATACAGAGATGACAAATCATCTTAGATTTGCTTTC-TCGTAATCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAATCA
*
7009806 CGTGAAAGCCAAATCAACTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCT
65 CGTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCT
* **
7009871 TGGATCTGCTTCAGTGAAATTGTCTGAAGGTGAGATCTGC-TGTGTCTGCTCTCCATCAAAGTGA
130 TGGATCCGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCATGTGTCTGCTCTCCATCAAAGTGA
7009935 AGATGCCAAA
195 AGATGCCAAA
7009945 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
* * **
7010010 ATGAAAGCCAAATCAGCTATGTCTTCGATTTTTTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
* *
7010075 GGATCTGCTTCAGCGAAATCATCT-AAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
131 GGATCCGCTTCAGTGAAATCATCTGAAGGTGAGATCTGC-ATGTGTCTGCTCTCCATCAAAGTGA
7010139 AGATGCCAAA
195 AGATGCCAAA
*
7010149 CTTC-ATTCGTTCTCTGACGATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
*
7010213 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
*
7010278 GGATCCGCTTCAGCAT-AAA-CATCTGAAGGCGAGATCTGCTATGTGT
131 GGATCCGCTTCAG--TGAAATCATCTGAAGGTGAGATCTGC-ATGTGT
7010324 GGCCTATTAC
Statistics
Matches: 539, Mismatches: 33, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
202 17 0.03
203 314 0.58
204 139 0.26
205 69 0.13
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (204 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAATCAC
GTGAAAGCCAAATCAACTATGTCTTCGATTTGCTCCTTGTAAACACAAGGATGCCAAACCATCTT
GGATCCGCTTCAGTGAAATCATCTGAAGGTGAGATCTGCATGTGTCTGCTCTCCATCAAAGTGAA
GATGCCAAA
Found at i:7018253 original size:13 final size:15
Alignment explanation
Indices: 7018223--7018253 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7018213 TTCCAGATTT
7018223 TCTTTTCTACCACTC
1 TCTTTTCTACCACTC
*
7018238 TCTTTTCTACCTCTC
1 TCTTTTCTACCACTC
7018253 T
1 T
7018254 GGAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.39, G:0.00, T:0.52
Consensus pattern (15 bp):
TCTTTTCTACCACTC
Found at i:7018339 original size:15 final size:14
Alignment explanation
Indices: 7018297--7018346 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
7018287 ATAACTTTGA
*
7018297 ATGCAAATGATGTG
1 ATGCAAATGATGAG
7018311 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
7018326 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
7018340 ATGCAAA
1 ATGCAAA
7018347 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:7020706 original size:63 final size:63
Alignment explanation
Indices: 7020607--7020732 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
7020597 GGTGATGTCT
7020607 AAGTTGGGCTTATACGGTCCTTCGACATGGGGTTGGTTCTAAAGTTTGAGGTACCCGAACCAG
1 AAGTTGGGCTTATACGGTCCTTCGACATGGGGTTGGTTCTAAAGTTTGAGGTACCCGAACCAG
7020670 AAGTTGGGCTTATACGGTCCTTCGACATGGGGTTGGTTCTAAAGTTTGAGGTACCCGAACCAG
1 AAGTTGGGCTTATACGGTCCTTCGACATGGGGTTGGTTCTAAAGTTTGAGGTACCCGAACCAG
7020733 CAGATTCCTC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (63 bp):
AAGTTGGGCTTATACGGTCCTTCGACATGGGGTTGGTTCTAAAGTTTGAGGTACCCGAACCAG
Found at i:7022171 original size:17 final size:17
Alignment explanation
Indices: 7022141--7022173 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7022131 AAAAGTAATG
7022141 ATATGTAAATAAAATAA
1 ATATGTAAATAAAATAA
7022158 ATATGCTAAA-AAAATA
1 ATATG-TAAATAAAATA
7022174 TACAGTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.27
Consensus pattern (17 bp):
ATATGTAAATAAAATAA
Found at i:7022246 original size:22 final size:23
Alignment explanation
Indices: 7022221--7022285 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
7022211 ATAAGTAAAG
7022221 AAAATATAATAACAATAATAG-A
1 AAAATATAATAACAATAATAGTA
* * *
7022243 AAAATACAACAATAATAATAGTA
1 AAAATATAATAACAATAATAGTA
7022266 AAAGATATAATAAC-ATAATA
1 AAA-ATATAATAACAATAATA
7022286 ATATAATAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 18 0.51
23 10 0.29
24 7 0.20
ACGTcount: A:0.66, C:0.06, G:0.05, T:0.23
Consensus pattern (23 bp):
AAAATATAATAACAATAATAGTA
Found at i:7022259 original size:3 final size:3
Alignment explanation
Indices: 7022253--7022469 Score: 69
Period size: 3 Copynumber: 73.3 Consensus size: 3
7022243 AAAATACAAC
* * * *
7022253 AAT AAT AAT AGT AA- AAG ATAT AAT AA- CAT AAT AAT -AT AAT AGT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
7022296 AAT AGT AAC AAT -AT GAC CAT AAT AGT AA- AAT AAT -AT ATT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * ** *
7022339 AAT AGT AAT AA- AAGT AGT GCT AAT AAT AAT AAT AAT AAT AAT -CT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
7022383 ATT AAGT TAT AAT GAA- AAT AAT GAT AAT GAT GAT -AT ATT AGAT AAT
1 AAT AA-T AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT
* *
7022429 AAT AAT AA- AAT AAT AAGT AAC AAT AAT AAAT TAT AAT AAT A
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT -AAT AAT AAT AAT A
7022470 GTGATGAGAA
Statistics
Matches: 155, Mismatches: 40, Indels: 38
0.67 0.17 0.16
Matches are distributed among these distances:
2 20 0.13
3 118 0.76
4 17 0.11
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7022488 original size:16 final size:16
Alignment explanation
Indices: 7022469--7022500 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7022459 TTATAATAAT
7022469 AGTGATGAGAATAACA
1 AGTGATGAGAATAACA
*
7022485 AGTGATGATAATAACA
1 AGTGATGAGAATAACA
7022501 GTAACAATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
AGTGATGAGAATAACA
Found at i:7022633 original size:16 final size:16
Alignment explanation
Indices: 7022604--7022641 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7022594 TATACGTATG
*
7022604 AAAA-ATAATGATAGT
1 AAAATATAATAATAGT
7022619 AAAATATAATAATAGT
1 AAAATATAATAATAGT
7022635 AATAATA
1 AA-AATA
7022642 ATAGTGGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 12 0.60
17 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (16 bp):
AAAATATAATAATAGT
Found at i:7022867 original size:3 final size:3
Alignment explanation
Indices: 7022853--7022885 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
7022843 AAATATACAC
7022853 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
7022886 TTAAAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7032943 original size:30 final size:30
Alignment explanation
Indices: 7032909--7032967 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
7032899 CTAGAAAATT
7032909 AAATTTAATCAATGTGATAAAATATGACTA
1 AAATTTAATCAATGTGATAAAATATGACTA
7032939 AAATTTAATCAATGTGATAAAATATGACT
1 AAATTTAATCAATGTGATAAAATATGACT
7032968 TCACCATCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (30 bp):
AAATTTAATCAATGTGATAAAATATGACTA
Found at i:7035694 original size:18 final size:18
Alignment explanation
Indices: 7035660--7035701 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7035650 GTATTTTTTT
*
7035660 ATTATTATATATTTTGTA
1 ATTATTATATATGTTGTA
7035678 ATTATTA-ATATAGTTGTA
1 ATTATTATATAT-GTTGTA
7035696 ACTTAT
1 A-TTAT
7035702 AGTATCCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (18 bp):
ATTATTATATATGTTGTA
Found at i:7037085 original size:12 final size:12
Alignment explanation
Indices: 7037068--7037092 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7037058 CTGGAACACC
7037068 TTTTTTTTCCTT
1 TTTTTTTTCCTT
7037080 TTTTTTTTCCTT
1 TTTTTTTTCCTT
7037092 T
1 T
7037093 CCACAAAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTCCTT
Found at i:7039329 original size:49 final size:50
Alignment explanation
Indices: 7039231--7039329 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 50
7039221 AAAGAAAAAT
* * * *
7039231 AAAACTCATGTTTAATTCTTGTTTATTTATGACATAGTTAGTAAATAAATAA
1 AAAACTCATGTTTAATTC-T-TTCACTTATGACATACTTAATAAATAAATAA
7039283 AAAACTCATGTTTAATTC-TTCACTTATGACATACTTAATAAATAAAT
1 AAAACTCATGTTTAATTCTTTCACTTATGACATACTTAATAAATAAAT
7039330 CCCCTAATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
49 25 0.58
52 18 0.42
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.40
Consensus pattern (50 bp):
AAAACTCATGTTTAATTCTTTCACTTATGACATACTTAATAAATAAATAA
Found at i:7043215 original size:26 final size:26
Alignment explanation
Indices: 7043186--7043248 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
7043176 TGTTTTTTCA
7043186 ATTTTTAAAAAATAAAAAT-GAAAATT
1 ATTTTTAAAAAATAAAAATAGAAAA-T
* *
7043212 ATTTTCT-TAAAATGAAAATAGAAAAT
1 ATTTT-TAAAAAATAAAAATAGAAAAT
*
7043238 ATTTTCAAAAA
1 ATTTTTAAAAA
7043249 TCAAACCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (26 bp):
ATTTTTAAAAAATAAAAATAGAAAAT
Found at i:7043235 original size:27 final size:25
Alignment explanation
Indices: 7043194--7043243 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
7043184 CAATTTTTAA
7043194 AAAATAAAAATGAAAATTATTTTCTT
1 AAAATAAAAATGAAAA-TATTTTCTT
*
7043220 AAAATGAAAATAGAAAATATTTTC
1 AAAATAAAAAT-GAAAATATTTTC
7043244 AAAAATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AAAATAAAAATGAAAATATTTTCTT
Found at i:7046029 original size:21 final size:22
Alignment explanation
Indices: 7045993--7046033 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
7045983 ATTTAATCAT
*
7045993 ATATTAATTTAGAAATAAATTA
1 ATATTAATTTAAAAATAAATTA
7046015 ATATT-ATTTAAAAATAAAT
1 ATATTAATTTAAAAATAAAT
7046034 AGACAGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
ATATTAATTTAAAAATAAATTA
Found at i:7053063 original size:14 final size:15
Alignment explanation
Indices: 7053044--7053073 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7053034 TAAGTCATTC
7053044 TCCAAAAAC-ATTTT
1 TCCAAAAACTATTTT
7053058 TCCAAAAACTATTTT
1 TCCAAAAACTATTTT
7053073 T
1 T
7053074 AATGAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (15 bp):
TCCAAAAACTATTTT
Found at i:7053457 original size:2 final size:2
Alignment explanation
Indices: 7053450--7053481 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7053440 CAATAAGACA
7053450 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7053482 GAAAGTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7057694 original size:28 final size:27
Alignment explanation
Indices: 7057662--7057714 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
7057652 AAATTGCTCT
7057662 ATCTTTAGGGATGATTTACTCAATATTC
1 ATCTTTAGGGATGA-TTACTCAATATTC
*
7057690 ATCTTTAGGGCTGATTACTCAATAT
1 ATCTTTAGGGATGATTACTCAATAT
7057715 CAAATTTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (27 bp):
ATCTTTAGGGATGATTACTCAATATTC
Found at i:7062593 original size:66 final size:67
Alignment explanation
Indices: 7062464--7062597 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
7062454 TTGAATTCTC
7062464 ACCGGTTTAATTTCTGATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGT
1 ACCGGTTTAATTTCTGATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGT
7062529 GA
66 GA
*
7062531 ACCGGTTTGATTTCTGATTTGGTTTTTTTACAAATTGCAATGGTT-CAATGACATCCTTCAAAGT
1 ACCGGTTTAATTTCTGATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGT
7062595 GA
66 GA
7062597 A
1 A
7062598 GTGTATAGAA
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
66 22 0.33
67 44 0.67
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (67 bp):
ACCGGTTTAATTTCTGATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGT
GA
Found at i:7062617 original size:66 final size:66
Alignment explanation
Indices: 7062480--7062617 Score: 190
Period size: 66 Copynumber: 2.1 Consensus size: 66
7062470 TTAATTTCTG
* *
7062480 ATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGTGAACCGGTTTGATTTC
1 ATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGTGAA-CGGTTAGAATTC
**
7062545 TG
65 AA
7062547 ATTTGGTTTTTTTACAAATTGCAATGGTT-CAATGACATCCTTCAAAGTGAA-GTGTATAGAATT
1 ATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGTGAACG-GT-TAGAATT
*
7062610 GAA
64 CAA
7062613 ATTTG
1 ATTTG
7062618 TGCAGGGTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
64 1 0.02
65 2 0.03
66 32 0.50
67 29 0.45
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (66 bp):
ATTTGGTTTTTTTACAAATTGCAATGGTTGCAATGACATCCTTCAAAGTGAACGGTTAGAATTCA
A
Found at i:7072443 original size:22 final size:22
Alignment explanation
Indices: 7072411--7072456 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7072401 TTTCTAGTTT
*
7072411 ATCATCGACTTTTTGGAAGAAA
1 ATCATCAACTTTTTGGAAGAAA
7072433 ATCATCAACTTTTTGGAAGAAA
1 ATCATCAACTTTTTGGAAGAAA
7072455 AT
1 AT
7072457 TTGCCTCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (22 bp):
ATCATCAACTTTTTGGAAGAAA
Found at i:7080007 original size:29 final size:31
Alignment explanation
Indices: 7079968--7080027 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
7079958 AAACAGTTTA
* *
7079968 AATTACCTTTTGATCATTAA-ATT-TTAATT
1 AATTACCTTTTCATCACTAATATTATTAATT
*
7079997 AATTACGTTTTCATCACTAATATTATTAATT
1 AATTACCTTTTCATCACTAATATTATTAATT
7080028 TATAATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.65
30 3 0.12
31 6 0.23
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (31 bp):
AATTACCTTTTCATCACTAATATTATTAATT
Found at i:7083534 original size:17 final size:17
Alignment explanation
Indices: 7083511--7083549 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
7083501 TAATCTTTTA
7083511 AAAATTA-TAAAAT-AT
1 AAAATTATTAAAATAAT
7083526 -AAATTATTAAAATAAT
1 AAAATTATTAAAATAAT
7083542 AAAATTAT
1 AAAATTAT
7083550 ATTTTTACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.29
15 6 0.29
16 2 0.10
17 7 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAATTATTAAAATAAT
Found at i:7093005 original size:45 final size:45
Alignment explanation
Indices: 7092941--7093068 Score: 184
Period size: 45 Copynumber: 2.8 Consensus size: 45
7092931 CATGTTTTCA
* *
7092941 CATGATGTCATAACGTCTTTCAACTATAATCTTACTCATTTCTAT
1 CATGATGCCATAACATCTTTCAACTATAATCTTACTCATTTCTAT
* * * * *
7092986 CGTGATGCCATAGCATCTTTAAACTATGATCTTACTCATTTTTAT
1 CATGATGCCATAACATCTTTCAACTATAATCTTACTCATTTCTAT
*
7093031 CATGATGCCATAACATCTTTCAGCTATAATCTTACTCA
1 CATGATGCCATAACATCTTTCAACTATAATCTTACTCA
7093069 ATTTTAGGTG
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (45 bp):
CATGATGCCATAACATCTTTCAACTATAATCTTACTCATTTCTAT
Found at i:7097586 original size:17 final size:16
Alignment explanation
Indices: 7097551--7097628 Score: 52
Period size: 17 Copynumber: 4.6 Consensus size: 16
7097541 AAATATTATA
* *
7097551 AAAACTTAAAAATACAT
1 AAAA-TTAAAAAAATAT
7097568 AAAAGTTAAAAAAATAT
1 AAAA-TTAAAAAAATAT
*
7097585 AAATATTAAAATAATACAT
1 AAA-ATTAAAA-AA-ATAT
*
7097604 GAAAATTATAAAAA-A-
1 -AAAATTAAAAAAATAT
7097619 AAAATTAAAA
1 AAAATTAAAA
7097629 TGTTGTTGTG
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
14 9 0.18
16 1 0.02
17 24 0.47
18 5 0.10
19 9 0.18
20 3 0.06
ACGTcount: A:0.69, C:0.04, G:0.03, T:0.24
Consensus pattern (16 bp):
AAAATTAAAAAAATAT
Found at i:7097603 original size:36 final size:33
Alignment explanation
Indices: 7097561--7097629 Score: 86
Period size: 36 Copynumber: 2.0 Consensus size: 33
7097551 AAAACTTAAA
7097561 AATACAT-AAAAGTTAAAAAAATATAAATATTAAAAT
1 AATACATGAAAA-TTAAAAAAA-A-AAA-ATTAAAAT
*
7097597 AATACATGAAAATTATAAAAAAAAAATTAAAAT
1 AATACATGAAAATTAAAAAAAAAAAATTAAAAT
7097630 GTTGTTGTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
33 8 0.26
34 3 0.10
35 1 0.03
36 15 0.48
37 4 0.13
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (33 bp):
AATACATGAAAATTAAAAAAAAAAAATTAAAAT
Found at i:7098623 original size:14 final size:14
Alignment explanation
Indices: 7098606--7098639 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7098596 TTTTTAGATA
*
7098606 TTTAATTTAATGGT
1 TTTAAATTAATGGT
7098620 TTTAAATTAATGGT
1 TTTAAATTAATGGT
*
7098634 TCTAAA
1 TTTAAA
7098640 ATTTGATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (14 bp):
TTTAAATTAATGGT
Found at i:7099274 original size:22 final size:22
Alignment explanation
Indices: 7099246--7099290 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7099236 TTTTGCGTAG
7099246 GTTAGTTTATTTAAAATATCAA
1 GTTAGTTTATTTAAAATATCAA
7099268 GTTAGTTTATTTAAAATATCAA
1 GTTAGTTTATTTAAAATATCAA
7099290 G
1 G
7099291 ATGATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.11, T:0.44
Consensus pattern (22 bp):
GTTAGTTTATTTAAAATATCAA
Found at i:7104435 original size:17 final size:17
Alignment explanation
Indices: 7104413--7104453 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
7104403 AATTAAGTTG
7104413 AGGTTTTGGAAGTTTTT
1 AGGTTTTGGAAGTTTTT
7104430 AGGTTTTGGAAGTTTTT
1 AGGTTTTGGAAGTTTTT
7104447 AGGTTTT
1 AGGTTTT
7104454 TGAGCATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.29, T:0.54
Consensus pattern (17 bp):
AGGTTTTGGAAGTTTTT
Found at i:7105273 original size:47 final size:47
Alignment explanation
Indices: 7105190--7105282 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 47
7105180 ACCTTGTATG
* ** *
7105190 TCGTACTGTTACTGTTACTTTGGTTTAATCCAATGAGGTACTAAGTA
1 TCGTACTGTTACTGTTACTTCGGTCAAAGCCAATGAGGTACTAAGTA
*
7105237 TCGTACTGTTACTGTTTACTTCGG-CAAAGCCGATGAGGTACTAAGT
1 TCGTACTGTTACTG-TTACTTCGGTCAAAGCCAATGAGGTACTAAGT
7105283 GCTGTACTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 32 0.80
48 8 0.20
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (47 bp):
TCGTACTGTTACTGTTACTTCGGTCAAAGCCAATGAGGTACTAAGTA
Found at i:7105378 original size:18 final size:18
Alignment explanation
Indices: 7105355--7105419 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
7105345 TAAACTACTG
7105355 TACTGAATAATTGATAGT
1 TACTGAATAATTGATAGT
** *
7105373 TACTGAATAACTAAATTATT
1 TACTGAATAA-TTGA-TAGT
*
7105393 GTATTGAATAATTGATAGT
1 -TACTGAATAATTGATAGT
*
7105412 TATTGAAT
1 TACTGAAT
7105420 TACTAAACTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
18 18 0.49
19 5 0.14
20 5 0.14
21 9 0.24
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.42
Consensus pattern (18 bp):
TACTGAATAATTGATAGT
Found at i:7105401 original size:39 final size:39
Alignment explanation
Indices: 7105345--7105492 Score: 161
Period size: 39 Copynumber: 3.8 Consensus size: 39
7105335 TTAGTAGGGG
*
7105345 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * *
7105384 TAAATTATTGTATTGAATAATTGATAGTTATTGAATTAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * * * ** *
7105423 TAAACTACTGCACTAAATATTTGATAAATACTGAATGAC
1 TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
* * *
7105462 TAAATTACTATACTGAATAACTGATTGTTAC
1 TAAATTACTGTACTGAATAATTGATAGTTAC
7105493 CGATCGCGAT
Statistics
Matches: 85, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (39 bp):
TAAATTACTGTACTGAATAATTGATAGTTACTGAATAAC
Found at i:7105479 original size:78 final size:78
Alignment explanation
Indices: 7105345--7105491 Score: 195
Period size: 78 Copynumber: 1.9 Consensus size: 78
7105335 TTAGTAGGGG
* * ** * * * *
7105345 TAAACTACTGTACTGAATAATTGATAGTTACTGAATAACTAAATTATTGTATTGAATAATTGATA
1 TAAACTACTGCACTAAATAATTGATAAATACTGAATAACTAAATTACTATACTGAATAACTGATA
7105410 GTTATTGAATTAC
66 GTTATTGAATTAC
* * *
7105423 TAAACTACTGCACTAAATATTTGATAAATACTGAATGACTAAATTACTATACTGAATAACTGATT
1 TAAACTACTGCACTAAATAATTGATAAATACTGAATAACTAAATTACTATACTGAATAACTGATA
7105488 GTTA
66 GTTA
7105492 CCGATCGCGA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 58 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (78 bp):
TAAACTACTGCACTAAATAATTGATAAATACTGAATAACTAAATTACTATACTGAATAACTGATA
GTTATTGAATTAC
Found at i:7108919 original size:13 final size:13
Alignment explanation
Indices: 7108901--7108927 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7108891 TATTAAAATT
7108901 TTTAAAAAATATA
1 TTTAAAAAATATA
7108914 TTTAAAAAATATA
1 TTTAAAAAATATA
7108927 T
1 T
7108928 ATTTAACAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TTTAAAAAATATA
Found at i:7108922 original size:15 final size:15
Alignment explanation
Indices: 7108904--7108933 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7108894 TAAAATTTTT
7108904 AAAAAATATATTTAA
1 AAAAAATATATTTAA
*
7108919 AAAATATATATTTAA
1 AAAAAATATATTTAA
7108934 CAAGTTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAAATATATTTAA
Found at i:7117919 original size:6 final size:7
Alignment explanation
Indices: 7117901--7117931 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
7117891 TATAAAAGTT
7117901 TAAAAAA
1 TAAAAAA
7117908 TAAAAAA
1 TAAAAAA
7117915 TAAAAAA
1 TAAAAAA
7117922 TAAAAAA
1 TAAAAAA
7117929 TAA
1 TAA
7117932 CTTGACTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
TAAAAAA
Found at i:7127565 original size:9 final size:8
Alignment explanation
Indices: 7127526--7127576 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 8
7127516 ATTTATTTGT
7127526 TATTATTA
1 TATTATTA
*
7127534 TATT-TTG
1 TATTATTA
7127541 TATTATTA
1 TATTATTA
*
7127549 TCACTATTA
1 T-ATTATTA
7127558 CTATTATTA
1 -TATTATTA
7127567 TATTTATTA
1 TA-TTATTA
7127576 T
1 T
7127577 TATTGTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
7 6 0.17
8 9 0.26
9 19 0.54
10 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (8 bp):
TATTATTA
Found at i:7130228 original size:20 final size:20
Alignment explanation
Indices: 7130182--7130230 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7130172 CAAAAATTAC
7130182 AAAAACATTCAAAATAATTTT
1 AAAAA-ATTCAAAATAATTTT
**
7130203 CGAAAATTCAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTT-T
7130223 AAAAAATT
1 AAAAAATT
7130231 AAATTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 3 0.13
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTTT
Found at i:7133867 original size:29 final size:29
Alignment explanation
Indices: 7133834--7133891 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
7133824 TTGAAAAAAG
7133834 TACAAAGAATGAGCAAAACAACAAACTAA
1 TACAAAGAATGAGCAAAACAACAAACTAA
*
7133863 TACAAAGAATGAGCAAAAGAACAAACTAA
1 TACAAAGAATGAGCAAAACAACAAACTAA
7133892 CTTCCGAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.62, C:0.16, G:0.12, T:0.10
Consensus pattern (29 bp):
TACAAAGAATGAGCAAAACAACAAACTAA
Found at i:7135221 original size:11 final size:10
Alignment explanation
Indices: 7135171--7135227 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
7135161 TTTTATATTT
7135171 TTAAAAAAT-
1 TTAAAAAATA
*
7135180 TTATAAAAATT
1 TTA-AAAAATA
7135191 TTAAAAAAT-
1 TTAAAAAATA
7135200 TCTAAAAAATA
1 T-TAAAAAATA
*
7135211 TATAAAGAATA
1 T-TAAAAAATA
7135222 TTAAAA
1 TTAAAA
7135228 TTTTAAAAGT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.10
10 24 0.59
11 13 0.32
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
TTAAAAAATA
Found at i:7138925 original size:46 final size:45
Alignment explanation
Indices: 7138874--7139034 Score: 155
Period size: 46 Copynumber: 3.5 Consensus size: 45
7138864 AGCATTCGAA
* *
7138874 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAG
* * *** * *
7138920 TTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-TCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGAG
*
7138967 CTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGTCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAG
*
7139013 CTCGTTGAGTTGAGTTCGAGTT
1 CTCGTTGAGTTGAGTCCGAGTT
7139035 TGCTAATGGG
Statistics
Matches: 89, Mismatches: 19, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 51 0.57
47 28 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.32
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGAG
Found at i:7139033 original size:93 final size:93
Alignment explanation
Indices: 7138865--7139034 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
7138855 GGATGGTTGA
* * * *
7138865 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAATTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
7138930 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTTCGAGTTCGAGAGATGTAACTAG
* * *
7138958 GCATCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
7139023 TGAGTTCGAGTT
66 TGAGTTCGAGTT
7139035 TGCTAATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTTCGAGTTCGAGAGATGTAACTAG
Found at i:7144082 original size:33 final size:35
Alignment explanation
Indices: 7144044--7144113 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 35
7144034 ATTTATTATT
*
7144044 ATAAATTATTAAAAAACA-TAT-TTAAATTA-AATA
1 ATAAA-TAATAAAAAACATTATGTTAAATTATAATA
*
7144077 ATAAATAATAAATAACATTTATGTTAAATTATAATA
1 ATAAATAATAAAAAACA-TTATGTTAAATTATAATA
7144113 A
1 A
7144114 AACATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
32 10 0.32
33 5 0.16
34 3 0.10
35 8 0.26
36 5 0.16
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (35 bp):
ATAAATAATAAAAAACATTATGTTAAATTATAATA
Found at i:7148023 original size:17 final size:18
Alignment explanation
Indices: 7148001--7148039 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
7147991 AAATTAATAA
7148001 AATAAAAATAAAT-AAAT
1 AATAAAAATAAATAAAAT
*
7148018 AATAAAACTAAATAAAAT
1 AATAAAAATAAATAAAAT
7148036 AATA
1 AATA
7148040 TCTTCTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
AATAAAAATAAATAAAAT
Found at i:7148023 original size:22 final size:23
Alignment explanation
Indices: 7147990--7148037 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
7147980 TAACCTATTC
7147990 TAAATTAATAAAA-TAAAAATAAA
1 TAAATTAATAAAACTAAAAA-AAA
*
7148013 TAAA-TAATAAAACTAAATAAAA
1 TAAATTAATAAAACTAAAAAAAA
7148035 TAA
1 TAA
7148038 TATCTTCTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
TAAATTAATAAAACTAAAAAAAA
Found at i:7150308 original size:79 final size:79
Alignment explanation
Indices: 7150155--7150316 Score: 225
Period size: 79 Copynumber: 2.1 Consensus size: 79
7150145 TAAAAACTAG
* * * *
7150155 CTTATGTTTTGTAATATTGTTGCTGGTATATTGTTGCTTATGTTGTTATACATGGCTACCGGTAT
1 CTTACGTTTTGTAATATTGTTACTGGTATATTGTTGCTTATGTTCTTATACATGGCTACCAGTAT
* *
7150220 GCATGGCTAACCAA
66 ACATAGCTAACCAA
* * *
7150234 CTTACGTTTTGTAATATTGTTACTGGTGTATTGTTGCTTATGTTCTTATACATGGCTGCTAGTAT
1 CTTACGTTTTGTAATATTGTTACTGGTATATTGTTGCTTATGTTCTTATACATGGCTACCAGTAT
* *
7150299 ACCTAGCTAACCAG
66 ACATAGCTAACCAA
7150313 CTTA
1 CTTA
7150317 TGTTGTTGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 72 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (79 bp):
CTTACGTTTTGTAATATTGTTACTGGTATATTGTTGCTTATGTTCTTATACATGGCTACCAGTAT
ACATAGCTAACCAA
Found at i:7151141 original size:77 final size:77
Alignment explanation
Indices: 7150992--7151226 Score: 272
Period size: 77 Copynumber: 2.9 Consensus size: 77
7150982 TTCTTTTGGG
* * **
7150992 ACAACATATGACCATCCCCACCGACAATCATACACACACACACCCCTAAAAAGCAGTTACTACAT
1 ACAACATATGACCATCCCCACCAACAATCATACACAGACA-A--ATTAAAAA--A--TACTACAT
* *
7151057 GCATATTAAAAAATAGTCA
59 GCATATTAAAAAACAATCA
*
7151076 ACAACATATGACCATCCCCACCAACAATCATACACAGACAAATTAAAAAATACTGCATGCATATT
1 ACAACATATGACCATCCCCACCAACAATCATACACAGACAAATTAAAAAATACTACATGCATATT
7151141 AAAAAACAATCA
66 AAAAAACAATCA
* * * * * * *
7151153 ACAGCATGTTAGCAACCCCACCAACAATTATACACAGACAAATTAAAAAAATGCTACATGCATAT
1 ACAACATATGACCATCCCCACCAACAATCATACACAGACAAATT-AAAAAATACTACATGCATAT
7151218 TAAAAAACA
65 TAAAAAACA
7151227 CTCACTAAAA
Statistics
Matches: 135, Mismatches: 15, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
77 62 0.46
78 27 0.20
79 1 0.01
81 6 0.04
83 1 0.01
84 38 0.28
ACGTcount: A:0.48, C:0.27, G:0.07, T:0.18
Consensus pattern (77 bp):
ACAACATATGACCATCCCCACCAACAATCATACACAGACAAATTAAAAAATACTACATGCATATT
AAAAAACAATCA
Found at i:7152921 original size:15 final size:15
Alignment explanation
Indices: 7152897--7152946 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
7152887 TTATCCTATT
7152897 AGACACATCACTTTC
1 AGACACATCACTTTC
* **
7152912 AGATACATCACTACC
1 AGACACATCACTTTC
*
7152927 AGACACATCAGTTTC
1 AGACACATCACTTTC
7152942 AGACA
1 AGACA
7152947 TTTCTTCTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.22
Consensus pattern (15 bp):
AGACACATCACTTTC
Found at i:7158893 original size:32 final size:33
Alignment explanation
Indices: 7158825--7158897 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
7158815 TAGAAAAGTT
* *
7158825 AATATTTTCTGGTGTTTGGATGAATTTATATAA
1 AATATTTTCTGGTGTTCGGATAAATTTATATAA
* *
7158858 AATATTTTCTGTTGTTCGG-TAAATTTCT-TACA
1 AATATTTTCTGGTGTTCGGATAAATTTATATA-A
7158890 AATATTTT
1 AATATTTT
7158898 ATAAAAGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
31 2 0.06
32 16 0.46
33 17 0.49
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.51
Consensus pattern (33 bp):
AATATTTTCTGGTGTTCGGATAAATTTATATAA
Found at i:7159283 original size:15 final size:15
Alignment explanation
Indices: 7159263--7159316 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
7159253 ATACTACAAA
7159263 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
7159278 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
7159295 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
7159312 ATATT
1 ATATT
7159317 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:7159380 original size:16 final size:16
Alignment explanation
Indices: 7159349--7159385 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7159339 ATGTGAATAA
7159349 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
7159365 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
7159381 TATTA
1 TATTA
7159386 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:7159437 original size:22 final size:22
Alignment explanation
Indices: 7159393--7159452 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
7159383 TTAAAATAAA
*
7159393 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
7159413 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
7159435 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
7159453 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:7168139 original size:44 final size:44
Alignment explanation
Indices: 7168089--7168177 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
7168079 GCAAAAGTGT
7168089 AAATAAGTGAATATATGTATTGAATTGAATAGTTTATGAATTAA
1 AAATAAGTGAATATATGTATTGAATTGAATAGTTTATGAATTAA
7168133 AAATAAGTGAATATATGTATTGAATTGAATAGTTTATGAATTAA
1 AAATAAGTGAATATATGTATTGAATTGAATAGTTTATGAATTAA
7168177 A
1 A
7168178 GGTTAATAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (44 bp):
AAATAAGTGAATATATGTATTGAATTGAATAGTTTATGAATTAA
Found at i:7170767 original size:47 final size:47
Alignment explanation
Indices: 7170715--7170966 Score: 188
Period size: 47 Copynumber: 5.1 Consensus size: 47
7170705 TGGTTGGACC
* *
7170715 ATGGCAACATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATCATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGCT
*
7170762 ATGGCATCGGTGTGATGTGATCATGTGATTTCCGTATAAGACCATAGCTGGGCT
1 ATGGCATC------ATGTGAT-ATGTGACTTCCGTATAAGACCATAGCTGGGCT
* * *
7170816 ATGGCATTGGAGAGATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGAT
1 ATGGCA-T-----CATGTGA-TATGTGACTTCCGTATAAGACCATAGCTGGGCT
* * * * * *
7170869 ATGACATCAGTGTGATATGTG-CTACTGTATAAGTCCATATCTGGGAT
1 ATGGCATCA-TGTGATATGTGACTTCCGTATAAGACCATAGCTGGGCT
* * * *
7170916 ATGGCATTAGTGTGATATGTGA--TCCATGTAAGACCATGGCTGGGCT
1 ATGGCATCA-TGTGATATGTGACTTCCGTATAAGACCATAGCTGGGCT
7170962 ATGGC
1 ATGGC
7170967 TTCGGTGTGT
Statistics
Matches: 169, Mismatches: 20, Indels: 33
0.76 0.09 0.15
Matches are distributed among these distances:
46 21 0.12
47 56 0.33
48 5 0.03
52 1 0.01
53 35 0.21
54 49 0.29
55 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (47 bp):
ATGGCATCATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGCT
Found at i:7170804 original size:54 final size:53
Alignment explanation
Indices: 7170723--7170884 Score: 227
Period size: 54 Copynumber: 3.0 Consensus size: 53
7170713 CCATGGCAAC
7170723 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
1 ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* * *
7170776 ATGTGATCATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATTGGAGAG
1 ATGTGAT-ATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
* * * * *
7170830 ATGTGATTATGTG-CTTCCGTATAAGACCATATCTGGGATATGACATCAGTGTG
1 ATGTGA-TATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
7170883 AT
1 AT
7170885 ATGTGCTACT
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 41 0.43
54 54 0.56
55 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTG
Found at i:7172875 original size:40 final size:40
Alignment explanation
Indices: 7172820--7172923 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 40
7172810 AAAATTGAAT
* * * *
7172820 AGATCGAGTATTAGCGGTGTTTTTATGAAATCGCCGCTAA
1 AGATCGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
*
7172860 AGATCGAGCATTAGCGGCGTTTTTAAGGAAGCGCCGCTAA
1 AGATCGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
* *
7172900 AGATTGA-CCTATAGCGGCGTTTTT
1 AGATCGAGCAT-TAGCGGCGTTTTT
7172924 TTAGATTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 2 0.04
40 54 0.96
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (40 bp):
AGATCGAGCATTAGCGGCGTTTTTAAGAAAGCGCCGCTAA
Found at i:7174000 original size:17 final size:17
Alignment explanation
Indices: 7173980--7174076 Score: 131
Period size: 17 Copynumber: 5.5 Consensus size: 17
7173970 CAATGATATG
7173980 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
7173997 CAATCTTAAATATGATTG
1 CAATCTTAGATATGA-TA
7174015 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
7174032 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
7174050 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
7174069 CAATCTTA
1 CAATCTTA
7174077 AAAGATATGA
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
17 30 0.43
18 30 0.43
19 9 0.13
20 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:7174018 original size:35 final size:35
Alignment explanation
Indices: 7173972--7174078 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
7173962 ATAATCTTCA
7173972 ATGATATGCAATCTTAGATATGATACAATCTTAAAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAAAT
*
7174008 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAAAT
7174043 ATGATTGCAATCTTAGATATGATATACAATCTTAAA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAAA
7174079 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 50 0.75
36 5 0.07
37 12 0.18
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAAAT
Found at i:7174020 original size:18 final size:18
Alignment explanation
Indices: 7173980--7174076 Score: 144
Period size: 18 Copynumber: 5.4 Consensus size: 18
7173970 CAATGATATG
7173980 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
* *
7173997 CAATCTTAAATATGATTG
1 CAATCTTAGATATGATTA
7174015 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
7174032 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
7174050 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
7174069 CAATCTTA
1 CAATCTTA
7174077 AAAGATATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
17 30 0.42
18 32 0.45
19 9 0.13
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:7174021 original size:52 final size:53
Alignment explanation
Indices: 7173964--7174077 Score: 144
Period size: 52 Copynumber: 2.2 Consensus size: 53
7173954 ATGGAAATAT
*
7173964 AATCTTCAATGATATGCAATCTTAGATATGA-TACAATCTTAAATATGAT-TGC
1 AATCTT-AATGATATGCAATCTTAGATATGATTACAATCTTAAATATGATATAC
* * *
7174016 AATCTTAGAT-ATGATACAATCTTAGATATGATTGCAATCTTAGATATGATATAC
1 AATCTTA-ATGAT-ATGCAATCTTAGATATGATTACAATCTTAAATATGATATAC
7174070 AATCTTAA
1 AATCTTAA
7174078 AAGATATGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
51 3 0.06
52 25 0.46
53 17 0.31
54 9 0.17
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.37
Consensus pattern (53 bp):
AATCTTAATGATATGCAATCTTAGATATGATTACAATCTTAAATATGATATAC
Found at i:7174402 original size:12 final size:12
Alignment explanation
Indices: 7174387--7174420 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
7174377 TATTTTTAAT
7174387 TTATTATATATA
1 TTATTATATATA
7174399 TTATTATATATA
1 TTATTATATATA
7174411 TTATT-TATAT
1 TTATTATATAT
7174421 TTTCAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 5 0.23
12 17 0.77
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATTATATATA
Found at i:7174413 original size:21 final size:21
Alignment explanation
Indices: 7174388--7174496 Score: 72
Period size: 21 Copynumber: 5.3 Consensus size: 21
7174378 ATTTTTAATT
7174388 TATTATATATATTATTATATA
1 TATTATATATATTATTATATA
*
7174409 TATTATTTATATT-TTCA-A-A
1 TATTATATATATTATT-ATATA
* *
7174428 -ATT-TGTAAATTATTATTATA
1 TATTATATATATTATTA-TATA
7174448 TATTATAT-T-TTAACTTATATA
1 TATTATATATATT-A-TTATATA
* *
7174469 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTA-TTATATA
7174490 TATTATA
1 TATTATA
7174497 CATTATTTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
17 7 0.10
18 5 0.07
19 2 0.03
20 6 0.09
21 41 0.59
22 8 0.12
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.59
Consensus pattern (21 bp):
TATTATATATATTATTATATA
Found at i:7174629 original size:25 final size:24
Alignment explanation
Indices: 7174597--7174667 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 24
7174587 TAAAATTCAC
7174597 TATTAAATATTATATTTTTATG-TA
1 TATTAAATATTATATTTTT-TGATA
* *
7174621 TTATTAAATGTTTATATTATTTGATA
1 -TATTAAAT-ATTATATTTTTTGATA
*
7174647 TAATACAATATTATATTTTTT
1 TATTA-AATATTATATTTTTT
7174668 ATTATTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 24 0.63
26 14 0.37
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (24 bp):
TATTAAATATTATATTTTTTGATA
Found at i:7174884 original size:3 final size:3
Alignment explanation
Indices: 7174876--7174916 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
7174866 TATGTTACTA
7174876 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
7174917 GTATTTGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7175987 original size:36 final size:36
Alignment explanation
Indices: 7175913--7175995 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
7175903 TATAGATTCC
*
7175913 TAAATCATAAAACTATAAACTTAAATCACTAGACCT
1 TAAATCATAAAACTATAAACTTAAATCACTAAACCT
* * *
7175949 TAAATTATAAAACT-TAAAACTATAAA-CCCTAAATCT
1 TAAATCATAAAACTAT-AAACT-TAAATCACTAAACCT
*
7175985 TAAACCATAAA
1 TAAATCATAAA
7175996 CCCTAAATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
35 1 0.03
36 34 0.87
37 4 0.10
ACGTcount: A:0.53, C:0.18, G:0.01, T:0.28
Consensus pattern (36 bp):
TAAATCATAAAACTATAAACTTAAATCACTAAACCT
Found at i:7175994 original size:21 final size:21
Alignment explanation
Indices: 7175956--7176054 Score: 85
Period size: 21 Copynumber: 4.5 Consensus size: 21
7175946 CCTTAAATTA
* *
7175956 TAAAACTTAAAACTATAAACCC
1 TAAATCTT-AAACCATAAACCC
7175978 TAAATCTTAAACCATAAACCC
1 TAAATCTTAAACCATAAACCC
** *
7175999 TAAATCCAAAACCATAAAACCT
1 TAAATCTTAAACCAT-AAACCC
7176021 TAAA-CTATAAA-CAGTAAACCC
1 TAAATCT-TAAACCA-TAAACCC
7176042 TTAAATACTTAAA
1 -TAAAT-CTTAAA
7176055 TACTAAGTCC
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
21 33 0.52
22 24 0.38
23 4 0.06
24 2 0.03
ACGTcount: A:0.53, C:0.23, G:0.01, T:0.23
Consensus pattern (21 bp):
TAAATCTTAAACCATAAACCC
Found at i:7179663 original size:15 final size:15
Alignment explanation
Indices: 7179645--7179699 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
7179635 ATTTGGATTA
*
7179645 ATTTATTTAAATATT
1 ATTTAATTAAATATT
7179660 ATTTAATTAATATAATT
1 ATTTAATTAA-AT-ATT
7179677 -TTT-A-TAAATATT
1 ATTTAATTAAATATT
7179689 ATTTAATTAAA
1 ATTTAATTAAA
7179700 ATAATTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 3 0.09
13 5 0.15
14 4 0.12
15 14 0.41
16 5 0.15
17 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:7179675 original size:29 final size:29
Alignment explanation
Indices: 7179643--7179708 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
7179633 TAATTTGGAT
*
7179643 TAATTTATT-TAAATATTATTTAATTAATA
1 TAATTT-TTATAAATATTATTTAATTAAAA
7179672 TAATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTTAATTAAAA
7179701 TAATTTTT
1 TAATTTTT
7179709 TTTCATGTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 2 0.06
29 33 0.94
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTTAATTAAAA
Found at i:7179681 original size:20 final size:20
Alignment explanation
Indices: 7179622--7179681 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
7179612 TCAATGTTAT
**
7179622 TTTAATTAATATAATTTGGA
1 TTTAATTAATATAATTTTTA
* * * *
7179642 -TTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTTTA
7179661 TTTAATTAATATAATTTTTA
1 TTTAATTAATATAATTTTTA
7179681 T
1 T
7179682 AAATATTATT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTAATTAATATAATTTTTA
Found at i:7179987 original size:9 final size:9
Alignment explanation
Indices: 7179975--7180179 Score: 198
Period size: 9 Copynumber: 23.9 Consensus size: 9
7179965 TAGAACTCAT
7179975 ATAACTTAC
1 ATAACTTAC
7179984 ATAACTTAC
1 ATAACTTAC
*
7179993 ATAACTCAC
1 ATAACTTAC
7180002 ATAAC-T--
1 ATAACTTAC
7180008 -T-ACTTAC
1 ATAACTTAC
*
7180015 ATAACTCAC
1 ATAACTTAC
7180024 ATAACTTAC
1 ATAACTTAC
*
7180033 ATAACTTAT
1 ATAACTTAC
7180042 ATAACTTAC
1 ATAACTTAC
*
7180051 ATAACTCAC
1 ATAACTTAC
*
7180060 ATAACTCAC
1 ATAACTTAC
7180069 ATAACTT--
1 ATAACTTAC
*
7180076 AT-ATTTAC
1 ATAACTTAC
*
7180084 ATAACTCAC
1 ATAACTTAC
*
7180093 ATAACTCAC
1 ATAACTTAC
7180102 ATAACTTAC
1 ATAACTTAC
*
7180111 AGAACTTAC
1 ATAACTTAC
*
7180120 ATAATTTAC
1 ATAACTTAC
7180129 ATAACTTAC
1 ATAACTTAC
7180138 ATAA--TAC
1 ATAACTTAC
* *
7180145 ATAA-ATAT
1 ATAACTTAC
* *
7180153 ATATCATATC
1 ATAACTTA-C
7180163 ATAACTTAC
1 ATAACTTAC
7180172 ATAACTTA
1 ATAACTTA
7180180 ATTAGAGTTA
Statistics
Matches: 164, Mismatches: 21, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 3 0.02
7 9 0.05
8 8 0.05
9 134 0.82
10 6 0.04
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7180012 original size:22 final size:22
Alignment explanation
Indices: 7179987--7180032 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
7179977 AACTTACATA
7179987 ACTTACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
7180009 ACTTACATAACTCACATAACTT
1 ACTTACATAACTCACATAACTT
7180031 AC
1 AC
7180033 ATAACTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.30
Consensus pattern (22 bp):
ACTTACATAACTCACATAACTT
Found at i:7183608 original size:12 final size:12
Alignment explanation
Indices: 7183591--7183617 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7183581 GAAGATCGAG
7183591 TGATGAATCTGA
1 TGATGAATCTGA
7183603 TGATGAATCTGA
1 TGATGAATCTGA
7183615 TGA
1 TGA
7183618 AGAGGATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.33
Consensus pattern (12 bp):
TGATGAATCTGA
Found at i:7187398 original size:21 final size:21
Alignment explanation
Indices: 7187369--7187430 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
7187359 TTAGAGCGGA
*
7187369 GGCAACAGCGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
7187390 GGCAGCAGCGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
* *
7187411 GGCAGTAGTGAGGGAGGCAG
1 GGCAGCAGCGAGGGAGGCAG
7187431 AGCAGAACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.26, C:0.19, G:0.52, T:0.03
Consensus pattern (21 bp):
GGCAGCAGCGAGGGAGGCAGC
Found at i:7187854 original size:43 final size:43
Alignment explanation
Indices: 7187794--7187994 Score: 294
Period size: 43 Copynumber: 4.7 Consensus size: 43
7187784 GTTTGTGAAA
* ** *
7187794 ACAAGCGCCGCTAAAAGCCATGACTTTTAGCGGTGCTTCCCCA
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
* *
7187837 ACAAATGTCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
* *
7187880 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCTCCT
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
*
7187923 ACAAACGTCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
* *
7187966 ACAAACGCCGTTAAAAACCATGATCTTTT
1 ACAAACGCCGCTAAAAGCCATGA-CTTTT
7187995 GTGGCGTTTT
Statistics
Matches: 141, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 136 0.96
44 5 0.04
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCACTTCCCCT
Found at i:7187944 original size:86 final size:86
Alignment explanation
Indices: 7187794--7187994 Score: 330
Period size: 86 Copynumber: 2.3 Consensus size: 86
7187784 GTTTGTGAAA
* * *
7187794 ACAAGCGCCGCTAAAAGCCATGACTTTTAGCGGTGCTTCCCCAACAAATGTCGCTAAAAGCCATG
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACGTCGCTAAAAGCCATG
7187859 ACTTTTAGCGGCACTTCCCCT
66 ACTTTTAGCGGCACTTCCCCT
* *
7187880 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCTCCTACAAACGTCGCTAAAAGCCATG
1 ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACGTCGCTAAAAGCCATG
7187945 ACTTTTAGCGGCACTTCCCCT
66 ACTTTTAGCGGCACTTCCCCT
* *
7187966 ACAAACGCCGTTAAAAACCATGATCTTTT
1 ACAAACGCCGCTAAAAGCCATGA-CTTTT
7187995 GTGGCGTTTT
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
86 102 0.95
87 5 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (86 bp):
ACAAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACGTCGCTAAAAGCCATG
ACTTTTAGCGGCACTTCCCCT
Found at i:7189433 original size:13 final size:13
Alignment explanation
Indices: 7189415--7189442 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7189405 GTGTTGAAAC
7189415 CATTAATCATTTA
1 CATTAATCATTTA
7189428 CATTAATCATTTA
1 CATTAATCATTTA
7189441 CA
1 CA
7189443 ACTACTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (13 bp):
CATTAATCATTTA
Found at i:7196546 original size:21 final size:21
Alignment explanation
Indices: 7196522--7196561 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7196512 GAATCGAAAC
7196522 TAAAGAAAA-AAAAAAGAAAGT
1 TAAA-AAAACAAAAAAGAAAGT
*
7196543 TAAAAAAACATAAAAGAAA
1 TAAAAAAACAAAAAAGAAA
7196562 AAAATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.78, C:0.03, G:0.10, T:0.10
Consensus pattern (21 bp):
TAAAAAAACAAAAAAGAAAGT
Found at i:7202145 original size:7 final size:7
Alignment explanation
Indices: 7202135--7202160 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7202125 TAAAAATTCA
7202135 AAATTTT
1 AAATTTT
7202142 AAATTTT
1 AAATTTT
7202149 AAATTTT
1 AAATTTT
7202156 AAATT
1 AAATT
7202161 CATGTTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:7202145 original size:14 final size:14
Alignment explanation
Indices: 7202128--7202162 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7202118 GTAAAAATAA
7202128 AAATTCAAAATTTT
1 AAATTCAAAATTTT
**
7202142 AAATTTTAAATTTT
1 AAATTCAAAATTTT
7202156 AAATTCA
1 AAATTCA
7202163 TGTTGTCAAA
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (14 bp):
AAATTCAAAATTTT
Found at i:7227693 original size:34 final size:34
Alignment explanation
Indices: 7227655--7227754 Score: 130
Period size: 34 Copynumber: 2.9 Consensus size: 34
7227645 TTATAATACT
*
7227655 ATTTGGTGT-CTTGGATGGTTTAGCTCATACGAGC
1 ATTTGGTGTGC-TGGATGGATTAGCTCATACGAGC
* *
7227689 ATTTGGTGTGCTAGATGGATTAGCTCATACAAGC
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
* * *
7227723 ATCTAGTGTGCTGGATGGATTAGCTTATACGA
1 ATTTGGTGTGCTGGATGGATTAGCTCATACGA
7227755 TCATCCAGTG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
34 56 0.98
35 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (34 bp):
ATTTGGTGTGCTGGATGGATTAGCTCATACGAGC
Found at i:7227765 original size:34 final size:34
Alignment explanation
Indices: 7227666--7227772 Score: 133
Period size: 34 Copynumber: 3.1 Consensus size: 34
7227656 TTTGGTGTCT
* * *
7227666 TGGATGGTTTAGCTCATACGAGCATTTGGTGTGC
1 TGGATGGATTAGCTCATACGAGCATCTAGTGTGC
* *
7227700 TAGATGGATTAGCTCATACAAGCATCTAGTGTGC
1 TGGATGGATTAGCTCATACGAGCATCTAGTGTGC
* * * *
7227734 TGGATGGATTAGCTTATACGATCATCCAGTGTGT
1 TGGATGGATTAGCTCATACGAGCATCTAGTGTGC
7227768 TGGAT
1 TGGAT
7227773 AGTTAACGTG
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 62 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (34 bp):
TGGATGGATTAGCTCATACGAGCATCTAGTGTGC
Found at i:7232113 original size:17 final size:18
Alignment explanation
Indices: 7232083--7232119 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7232073 GTATTTTTTT
7232083 AAATTCAAAGAAAT-TTA
1 AAATTCAAAGAAATCTTA
7232100 AAATATCAAA-AAATCTTA
1 AAAT-TCAAAGAAATCTTA
7232118 AA
1 AA
7232120 TTTTAGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.27
Consensus pattern (18 bp):
AAATTCAAAGAAATCTTA
Found at i:7232120 original size:17 final size:16
Alignment explanation
Indices: 7232080--7232121 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 16
7232070 TATGTATTTT
7232080 TTTAAATTCAAAGAAA
1 TTTAAATTCAAAGAAA
7232096 TTTAAAATATCAAA-AAA
1 TTT-AAAT-TCAAAGAAA
7232113 TCTTAAATT
1 T-TTAAATT
7232122 TTAGATGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 4 0.17
17 12 0.52
18 7 0.30
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (16 bp):
TTTAAATTCAAAGAAA
Found at i:7232890 original size:12 final size:12
Alignment explanation
Indices: 7232860--7232892 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7232850 TATATATTTT
7232860 AAAATT-ATATA
1 AAAATTAATATA
7232871 AAAA-TAATATA
1 AAAATTAATATA
7232882 AAAATTAATAT
1 AAAATTAATAT
7232893 GAGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:7233454 original size:13 final size:13
Alignment explanation
Indices: 7233436--7233460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7233426 TTAAAATTTA
7233436 TATTTATATTTTC
1 TATTTATATTTTC
7233449 TATTTATATTTT
1 TATTTATATTTT
7233461 ATTATTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTATATTTTC
Found at i:7235117 original size:13 final size:13
Alignment explanation
Indices: 7235101--7235125 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7235091 TATGACAAAC
7235101 TGATAATCTAAAG
1 TGATAATCTAAAG
7235114 TGATAATCTAAA
1 TGATAATCTAAA
7235126 ATGCTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (13 bp):
TGATAATCTAAAG
Found at i:7244904 original size:25 final size:25
Alignment explanation
Indices: 7244876--7244925 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
7244866 ATAGTATGTA
7244876 CATATAAATAAGTTATGTTCATATT
1 CATATAAATAAGTTATGTTCATATT
*
7244901 CATATAAATAAGTTATGTTTATATT
1 CATATAAATAAGTTATGTTCATATT
7244926 TGACCATGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (25 bp):
CATATAAATAAGTTATGTTCATATT
Found at i:7247926 original size:28 final size:28
Alignment explanation
Indices: 7247884--7247949 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
7247874 GGTTTTAGAT
*
7247884 ATTAAATGTAGGGAAAATGCATTAAGAC
1 ATTAAATGTAAGGAAAATGCATTAAGAC
* *
7247912 ATTAAATGTAAGGAAAATGTATTAAGGC
1 ATTAAATGTAAGGAAAATGCATTAAGAC
7247940 ATTAAATGTA
1 ATTAAATGTA
7247950 GAGAAAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.29
Consensus pattern (28 bp):
ATTAAATGTAAGGAAAATGCATTAAGAC
Found at i:7250090 original size:44 final size:45
Alignment explanation
Indices: 7249984--7250117 Score: 126
Period size: 44 Copynumber: 3.0 Consensus size: 45
7249974 ACAGGACAGA
* * * *
7249984 ACAGAAATGAGCCATGTAAGTCTATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * * *
7250030 ACAGGATTGAGCCATGTAAGTCCATATT-ATATGTGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
** * * *
7250074 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
7250118 CAGGATATTG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
44 35 0.49
45 1 0.01
46 35 0.49
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:7268455 original size:28 final size:28
Alignment explanation
Indices: 7268393--7268457 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
7268383 TGGGCTTAAC
* ** *
7268393 CAAAACAGAACAACATCGTAGTACTTAT
1 CAAAACAGAACAACACCACAGTACATAT
* *
7268421 TAGAACAGAACAACACCACAGTACATAT
1 CAAAACAGAACAACACCACAGTACATAT
7268449 CAAAACAGA
1 CAAAACAGA
7268458 GAGCACACTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.23, G:0.11, T:0.15
Consensus pattern (28 bp):
CAAAACAGAACAACACCACAGTACATAT
Found at i:7270822 original size:7 final size:7
Alignment explanation
Indices: 7270810--7270839 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
7270800 TTTTATATAA
7270810 AAAAATT
1 AAAAATT
7270817 AAAAATT
1 AAAAATT
7270824 AAAAATT
1 AAAAATT
7270831 AAAAATT
1 AAAAATT
7270838 AA
1 AA
7270840 TTAAATTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:7277559 original size:13 final size:13
Alignment explanation
Indices: 7277519--7277569 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
7277509 TTAATAATGA
7277519 TATTTTAATTGATAT
1 TATTTTAATT--TAT
*
7277534 T-TTTTAAAATTAT
1 TATTTT-AATTTAT
7277547 TATTTTAATTTAT
1 TATTTTAATTTAT
*
7277560 AATTTTAATT
1 TATTTTAATT
7277570 GAAAACAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 19 0.61
14 8 0.26
15 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (13 bp):
TATTTTAATTTAT
Found at i:7279777 original size:22 final size:21
Alignment explanation
Indices: 7279743--7279786 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
7279733 AAGCCATGTT
7279743 ATGAGAGATTATATAATAAAAG
1 ATGAGAGATTATAT-ATAAAAG
*
7279765 ATGAGA-ATATATATTTAAAAG
1 ATGAGAGAT-TATATATAAAAG
7279786 A
1 A
7279787 AACTATATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.30
Consensus pattern (21 bp):
ATGAGAGATTATATATAAAAG
Found at i:7279984 original size:112 final size:112
Alignment explanation
Indices: 7279862--7280085 Score: 448
Period size: 112 Copynumber: 2.0 Consensus size: 112
7279852 GTATATATAT
7279862 ATATATATATAGGAGTTTAAACAAACAAATTTAAAAGAAAATAGATAGATGTATGTATATATATA
1 ATATATATATAGGAGTTTAAACAAACAAATTTAAAAGAAAATAGATAGATGTATGTATATATATA
7279927 TAGTTACATGTATAGATGTATTTACATATAAATGAAAGTACAAATAA
66 TAGTTACATGTATAGATGTATTTACATATAAATGAAAGTACAAATAA
7279974 ATATATATATAGGAGTTTAAACAAACAAATTTAAAAGAAAATAGATAGATGTATGTATATATATA
1 ATATATATATAGGAGTTTAAACAAACAAATTTAAAAGAAAATAGATAGATGTATGTATATATATA
7280039 TAGTTACATGTATAGATGTATTTACATATAAATGAAAGTACAAATAA
66 TAGTTACATGTATAGATGTATTTACATATAAATGAAAGTACAAATAA
7280086 CAAACTAAAA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 112 1.00
ACGTcount: A:0.50, C:0.04, G:0.12, T:0.33
Consensus pattern (112 bp):
ATATATATATAGGAGTTTAAACAAACAAATTTAAAAGAAAATAGATAGATGTATGTATATATATA
TAGTTACATGTATAGATGTATTTACATATAAATGAAAGTACAAATAA
Found at i:7284454 original size:15 final size:15
Alignment explanation
Indices: 7284430--7284461 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7284420 CTAAAGGTGA
*
7284430 TTTTCTTTTTTTCAT
1 TTTTCATTTTTTCAT
7284445 TTTTCATTTTTTCAT
1 TTTTCATTTTTTCAT
7284460 TT
1 TT
7284462 CTATTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTCATTTTTTCAT
Found at i:7285571 original size:50 final size:50
Alignment explanation
Indices: 7285496--7285672 Score: 275
Period size: 50 Copynumber: 3.5 Consensus size: 50
7285486 CCATGGCAAC
7285496 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
7285546 AAGTGATAAGT-AGTAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGA-TAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
7285596 AAGTGATAAGTGATAGCTTCGGCTACACCTATCTGATCAGGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
7285646 CAAGTGAAAAGTGGTAGCTTCTGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
7285673 CTGATCAGTG
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
49 1 0.01
50 92 0.79
51 24 0.21
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:7285686 original size:31 final size:31
Alignment explanation
Indices: 7285648--7285796 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
7285638 ACAAATGACA
*
7285648 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
7285679 AGTGAAAAGTGGTAGCTTCTGCTACATGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
7285710 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
7285741 AGTGAAAAATAGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
7285772 AGTGAATAGTGGTAACTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
7285797 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 107 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:7285900 original size:47 final size:46
Alignment explanation
Indices: 7285814--7285936 Score: 131
Period size: 47 Copynumber: 2.7 Consensus size: 46
7285804 AAGTAATTTC
* ** * *
7285814 CGTATAAGACCATATTTGGGATATGTTATCGGTGTGATATATGCTATT
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG--ATT
*
7285862 -GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATT
** * *
7285907 CGCGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
7285937 GATATATGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 3 0.05
46 25 0.39
47 36 0.56
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATT
Found at i:7285926 original size:46 final size:42
Alignment explanation
Indices: 7285865--7286024 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 42
7285855 TGCTATTGTA
* * *
7285865 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGAT-TCGCG
1 TAAGACCATAGCTGGGCTATGGCATC---GAGATATG-AATAT-GCG
* *
7285911 TAAGACCATAGCTGGGCTATGGCATCGATATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGAGATATGAATATGCG
* * * * *
7285953 TAAGACCATAGCTGGGCTATGGCA-CCATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGA-GATATGAATATGCG
* **
7285995 TAAGACCATAGTTGAACTATGGCATCGAGA
1 TAAGACCATAGCTGGGCTATGGCATCGAGA
7286025 AAACGAAGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.63
43 10 0.10
46 24 0.24
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (42 bp):
TAAGACCATAGCTGGGCTATGGCATCGAGATATGAATATGCG
Found at i:7285966 original size:42 final size:43
Alignment explanation
Indices: 7285910--7286022 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 43
7285900 TGTGATTCGC
*
7285910 GTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGT
* *
7285952 GTAAGACCATAGCTGGGCTATGGCA-CCATTATGTGAAGATGT
1 GTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGT
* **
7285994 GTAAGACCATAGTTGAACTATGGCATCGA
1 GTAAGACCATAGCTGGGCTATGGCATCGA
7286023 GAAAACGAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.03
42 58 0.94
43 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (43 bp):
GTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGATGT
Found at i:7290821 original size:8 final size:7
Alignment explanation
Indices: 7290800--7290862 Score: 62
Period size: 8 Copynumber: 9.1 Consensus size: 7
7290790 ATGTTTAGCA
7290800 TTTA-TT
1 TTTATTT
7290806 TTTATTT
1 TTTATTT
7290813 TTCTATTT
1 TT-TATTT
7290821 TTTA--T
1 TTTATTT
7290826 TTTATTT
1 TTTATTT
*
7290833 TTT-GTT
1 TTTATTT
7290839 TTTATTT
1 TTTATTT
7290846 ATTTATTT
1 -TTTATTT
7290854 ATTTATTT
1 -TTTATTT
7290862 T
1 T
7290863 CTTCTTTCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
5 5 0.10
6 9 0.18
7 13 0.27
8 22 0.45
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.81
Consensus pattern (7 bp):
TTTATTT
Found at i:7290835 original size:21 final size:20
Alignment explanation
Indices: 7290800--7290862 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 20
7290790 ATGTTTAGCA
*
7290800 TTTATTTTTATTTTTCTATTT
1 TTTA-TTTTATTTTTTTATTT
*
7290821 TTTATTTTATTTTTTGTTTTT
1 TTTATTTTATTTTTT-TATTT
*
7290842 ATTTA-TTTATTTATTTATTT
1 -TTTATTTTATTTTTTTATTT
7290862 T
1 T
7290863 CTTCTTTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 1 0.03
20 14 0.39
21 17 0.47
22 4 0.11
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTATTTTATTTTTTTATTT
Found at i:7290848 original size:4 final size:4
Alignment explanation
Indices: 7290806--7290861 Score: 53
Period size: 4 Copynumber: 13.8 Consensus size: 4
7290796 AGCATTTATT
* *
7290806 TTTA TTT- TTCTA TTT- TTTA TTTTA TTTT TTGTT TTTA TTTA TTTA TTTA
1 TTTA TTTA TT-TA TTTA TTTA -TTTA TTTA TT-TA TTTA TTTA TTTA TTTA
7290855 TTTA TTT
1 TTTA TTT
7290862 TCTTCTTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
3 5 0.11
4 30 0.67
5 10 0.22
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (4 bp):
TTTA
Done.