Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 240 of 362
Found at i:81150777 original size:3 final size:3
Alignment explanation
Indices: 81150769--81150802 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
81150759 TACGGAGAGC
81150769 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
81150803 AAGGTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:81154077 original size:26 final size:27
Alignment explanation
Indices: 81154043--81154095 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
81154033 TATTTTGATA
*
81154043 ATGAATTTTAT-TTTTTTATATTTTTC
1 ATGAATTTTATATATTTTATATTTTTC
*
81154069 ATGACTTTTATAATATTTTATATTTTT
1 ATGAATTTTAT-ATATTTTATATTTTT
81154096 TAAAAATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 10 0.43
28 13 0.57
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (27 bp):
ATGAATTTTATATATTTTATATTTTTC
Found at i:81154114 original size:18 final size:19
Alignment explanation
Indices: 81154064--81154115 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
81154054 TTTTTTATAT
*
81154064 TTTTCATGACTTTTATAATA
1 TTTT-ATGACTTTTATAAAA
*
81154084 TTTTAT-A-TTTTTTAAAAA
1 TTTTATGACTTTTAT-AAAA
81154102 TTTTATGACTTTTA
1 TTTTATGACTTTTA
81154116 GCAGCGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.19
18 10 0.38
19 3 0.12
20 8 0.31
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTTATGACTTTTATAAAA
Found at i:81156453 original size:15 final size:15
Alignment explanation
Indices: 81156433--81156464 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81156423 AATAGGGCAT
81156433 TTCTATTACTAGTAC
1 TTCTATTACTAGTAC
*
81156448 TTCTATTATTAGTAC
1 TTCTATTACTAGTAC
81156463 TT
1 TT
81156465 TGACACTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (15 bp):
TTCTATTACTAGTAC
Found at i:81167344 original size:16 final size:17
Alignment explanation
Indices: 81167318--81167356 Score: 62
Period size: 16 Copynumber: 2.3 Consensus size: 17
81167308 CTTATTAAGA
81167318 GAATAATCCGTACGTA-C
1 GAAT-ATCCGTACGTACC
81167335 GAATATCCGTACGTACC
1 GAATATCCGTACGTACC
81167352 GAATA
1 GAATA
81167357 AAATGAGCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (17 bp):
GAATATCCGTACGTACC
Found at i:81172460 original size:19 final size:19
Alignment explanation
Indices: 81172436--81172480 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
81172426 AATATCGAAA
81172436 TCGATACTTCGGTGATAGT
1 TCGATACTTCGGTGATAGT
81172455 TCGATACTTCGGTGATAGT
1 TCGATACTTCGGTGATAGT
81172474 TC-ATACT
1 TCGATACT
81172481 CATCAAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (19 bp):
TCGATACTTCGGTGATAGT
Found at i:81215024 original size:36 final size:36
Alignment explanation
Indices: 81214983--81215056 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
81214973 TTTAAGGACC
*
81214983 TTCTCCCATTCAATATTTTAAAAAATATTCAAGGTT
1 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
81215019 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
1 TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
81215055 TT
1 TT
81215057 TTAAATCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (36 bp):
TTCTCCCACTCAATATTTTAAAAAATATTCAAGGTT
Found at i:81222040 original size:27 final size:27
Alignment explanation
Indices: 81222010--81222133 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
81222000 TGTAGGGTAG
* *
81222010 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
81222037 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
81222064 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
** * *
81222091 AATTACCAAAATACGTCTGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
**
81222118 AATTACTGAAATACCC
1 AATTACCAAAATACCC
81222134 TCGACCTATA
Statistics
Matches: 85, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:81222068 original size:54 final size:54
Alignment explanation
Indices: 81222010--81222206 Score: 191
Period size: 54 Copynumber: 3.6 Consensus size: 54
81222000 TGTAGGGTAG
* * *
81222010 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTGATTTGTAA
* * ** *
81222064 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACGTCTGATTTGTGA
1 AATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAATACCCCTGATTTGTAA
** ** *** *
81222118 AATTACTGAAATACCCTCGACCTATAAAATTATTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCT-GATTTGTAA
* * *
81222172 AATTACCAAAGTACCCTCGATTTACAGAATTACCA
1 AATTACCAAAATACCCTCGATTTATAAAATTACCA
81222207 TTTTACCCTC
Statistics
Matches: 109, Mismatches: 31, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
53 2 0.02
54 105 0.96
55 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTCGATTTATAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:81222147 original size:27 final size:27
Alignment explanation
Indices: 81222117--81222191 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
81222107 CTGATTTGTG
81222117 AAATTACTGAAATACCCTCGACCTATA
1 AAATTACTGAAATACCCTCGACCTATA
* * *
81222144 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTATA
*
81222171 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
81222192 TTTACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.07
27 39 0.93
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTATA
Found at i:81222214 original size:54 final size:54
Alignment explanation
Indices: 81222156--81222576 Score: 428
Period size: 54 Copynumber: 7.6 Consensus size: 54
81222146 ATTATTGAAA
* ** *** * *
81222156 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* **
81222210 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* * * *
81222264 TACCCTCGATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* *
81222318 TACCCTCAATTTATAGAATTACTGTTTTACCCTTATTTTACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACA-AA--A-----TTA-CC--ATTTTACCCTCGATTTACAAAATTACCGTTT
* * * *
81222383 TACCCTTGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* * *
81222437 TACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* * ** ** * * *
81222491 TACCCTCGATTTAGAGAATTACTGTTTTACGATCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
* *
81222545 TACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCC
81222577 ATAGGGTGTT
Statistics
Matches: 308, Mismatches: 48, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
54 254 0.82
55 2 0.01
56 1 0.00
57 4 0.01
62 4 0.01
63 1 0.00
64 2 0.01
65 40 0.13
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACCGTTT
Found at i:81222230 original size:81 final size:81
Alignment explanation
Indices: 81222145--81222485 Score: 234
Period size: 81 Copynumber: 4.1 Consensus size: 81
81222135 CGACCTATAA
* ** *
81222145 AATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTT
1 AATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACCATTT
81222210 TACCCTCGATTTACAG
66 TACCCTCGATTTACAG
*** * **** * *
81222226 AATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTT
1 AATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACCATTT
*
81222291 TACCTTCGATTTACAG
66 TACCCTCGATTTACAG
* *** * * * ***
81222307 AATTACCGTTTTACCCTCAATTTATAGAATTACTGTTTTACCCTTATTTTACCCTCGATTTACAA
1 AATTACTGAAATACCCTCGACTTACA-AA--A-----TTA-CC--AAAGTACCCTCGATTTACAA
* * *
81222372 AATTACCGTTTTACCCTTGATTTACAA
55 AATTACCATTTTACCCTCGATTTACAG
** * * *** *
81222399 AATTACT-ATTTTACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACTATT
1 AATTACTGA-AATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACCATT
*
81222463 TTATCCTCGATTTACAG
65 TTACCCTCGATTTACAG
81222480 AATTAC
1 AATTAC
81222486 CGTTTTACCC
Statistics
Matches: 215, Mismatches: 33, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
81 137 0.64
82 2 0.01
83 1 0.00
84 4 0.02
89 4 0.02
90 2 0.01
91 2 0.01
92 63 0.29
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.39
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGACTTACAAAATTACCAAAGTACCCTCGATTTACAAAATTACCATTT
TACCCTCGATTTACAG
Found at i:81222357 original size:27 final size:27
Alignment explanation
Indices: 81222183--81222350 Score: 255
Period size: 27 Copynumber: 6.2 Consensus size: 27
81222173 ATTACCAAAG
*
81222183 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81222210 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81222237 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
81222264 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
81222291 TACCTTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
81222318 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
81222345 TACCCT
1 TACCCT
81222351 TATTTTACCC
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:81222357 original size:38 final size:39
Alignment explanation
Indices: 81222315--81222394 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
81222305 AGAATTACCG
* * *
81222315 TTTTACCCTCAATTTATAGAATTACTGTTTTACCCTT-A
1 TTTTACCCTCAATTTACAAAATTACCGTTTTACCCTTGA
*
81222353 TTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGA
1 TTTTACCCTCAATTTACAAAATTACCGTTTTACCCTTGA
81222392 TTT
1 TTT
81222395 ACAAAATTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.89
39 4 0.11
ACGTcount: A:0.25, C:0.23, G:0.06, T:0.46
Consensus pattern (39 bp):
TTTTACCCTCAATTTACAAAATTACCGTTTTACCCTTGA
Found at i:81222383 original size:27 final size:27
Alignment explanation
Indices: 81222352--81222576 Score: 270
Period size: 27 Copynumber: 8.3 Consensus size: 27
81222342 TTTTACCCTT
81222352 ATTTTACCCTCGATTTACAAAATTACC
1 ATTTTACCCTCGATTTACAAAATTACC
* * *
81222379 GTTTTACCCTTGATTTACAAAATTACT
1 ATTTTACCCTCGATTTACAAAATTACC
*
81222406 ATTTTACCCTCGATTTACAAAATTATC
1 ATTTTACCCTCGATTTACAAAATTACC
*
81222433 ATTTTACCCTCGATTTACAAAATTACT
1 ATTTTACCCTCGATTTACAAAATTACC
* *
81222460 ATTTTATCCTCGATTTACAGAATTACC
1 ATTTTACCCTCGATTTACAAAATTACC
* * * *
81222487 GTTTTACCCTCGATTTAGAGAATTACT
1 ATTTTACCCTCGATTTACAAAATTACC
* ** * * *
81222514 GTTTTACGATCGATTTATAGAATTATC
1 ATTTTACCCTCGATTTACAAAATTACC
* * *
81222541 GTTTTACCCTTGATTTATAAAATTACC
1 ATTTTACCCTCGATTTACAAAATTACC
81222568 ATTTTACCC
1 ATTTTACCC
81222577 ATAGGGTGTT
Statistics
Matches: 171, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTCGATTTACAAAATTACC
Found at i:81222475 original size:173 final size:173
Alignment explanation
Indices: 81222183--81222520 Score: 554
Period size: 173 Copynumber: 2.0 Consensus size: 173
81222173 ATTACCAAAG
* * *
81222183 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
81222248 TACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTAC
66 TACAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCTTCGATTTACAGAATTAC
*
81222313 CGTTTTACCCTCAATTTATAGAATTACTGTTTTACCCTTATTT
131 CGTTTTACCCTCAATTTAGAGAATTACTGTTTTACCCTTATTT
* *
81222356 TACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
81222421 TACAAAATTATCATTTTACCCTCGATTTACAAAATTA-CTATTTTATCC-TCGATTTACAGAATT
66 TACAAAATTACCATTTTACCCTCGATTTACAAAATTATC-ATTTTA-CCTTCGATTTACAGAATT
*
81222484 ACCGTTTTACCCTCGATTTAGAGAATTACTGTTTTAC
129 ACCGTTTTACCCTCAATTTAGAGAATTACTGTTTTAC
81222521 GATCGATTTA
Statistics
Matches: 153, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
172 1 0.01
173 150 0.98
174 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (173 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCTTCGATTTACAGAATTAC
CGTTTTACCCTCAATTTAGAGAATTACTGTTTTACCCTTATTT
Found at i:81222476 original size:146 final size:146
Alignment explanation
Indices: 81222206--81222496 Score: 456
Period size: 146 Copynumber: 2.0 Consensus size: 146
81222196 CAGAATTACC
* * *
81222206 ATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTC
* * * * *
81222271 GATTTACAAAATTATCGTTTTACCTTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAA
66 GATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAA
*
81222336 TTACTGTTTTACCCTT
131 TTACCGTTTTACCCTT
* *
81222352 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTC
1 ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTC
* * *
81222417 GATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACTATTTTATCCTCGATTTACAGAA
66 GATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAA
81222482 TTACCGTTTTACCCT
131 TTACCGTTTTACCCT
81222497 CGATTTAGAG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
146 131 1.00
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.42
Consensus pattern (146 bp):
ATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTC
GATTTACAAAATTATCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAGAA
TTACCGTTTTACCCTT
Found at i:81223112 original size:6 final size:6
Alignment explanation
Indices: 81223081--81223155 Score: 73
Period size: 6 Copynumber: 12.3 Consensus size: 6
81223071 TTGCATTCAC
* *
81223081 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
81223130 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
81223156 AATGTTTCTT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 4 0.07
8 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:81225053 original size:27 final size:27
Alignment explanation
Indices: 81225023--81225081 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
81225013 GTAGGCTAGC
*
81225023 ATTACTGAAATACCCTTATAAGGTAGA
1 ATTACTGAAATACCCCTATAAGGTAGA
* * *
81225050 ATTACTGAAATGCCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTATAAGGTAGA
81225077 ATTAC
1 ATTAC
81225082 CAAAATATCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCCTATAAGGTAGA
Found at i:81225106 original size:27 final size:26
Alignment explanation
Indices: 81225076--81225227 Score: 153
Period size: 27 Copynumber: 5.7 Consensus size: 26
81225066 TGTAGGGTAG
* *
81225076 AATTACCAAAATATCCTTAGTTTATAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
81225103 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
*
81225130 AATTAGCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATA-CCCTAGTTTGTAA
* *
81225157 AATCACCAAAATACCTCT-GATTTGTGA
1 AATTACCAAAATACC-CTAG-TTTGTAA
* * * *
81225184 AATTACTAAAATACCCTCGACTTATAA
1 AATTACCAAAATACCCTAG-TTTGTAA
*
81225211 AATTACCAAAGTACCCT
1 AATTACCAAAATACCCT
81225228 CGATTAATAG
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.05
27 103 0.95
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTGTAA
Found at i:81225120 original size:54 final size:54
Alignment explanation
Indices: 81225057--81225171 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
81225047 AGAATTACTG
* * * * *
81225057 AAATGCCCCT-GTAGGGTAGAATTACCAAAATATCCTTAGTTTATAAAATTACCA
1 AAATACCCCTAGT-GGGTAAAATTACCAAAATACCCCTAGTTTATAAAATCACCA
** * *
81225111 AAATACCCCTAGTTTGTAAAATTAGCAAAATACCCCTAGTTTGTAAAATCACCA
1 AAATACCCCTAGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATCACCA
81225165 AAATACC
1 AAATACC
81225172 TCTGATTTGT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (54 bp):
AAATACCCCTAGTGGGTAAAATTACCAAAATACCCCTAGTTTATAAAATCACCA
Found at i:81225252 original size:27 final size:27
Alignment explanation
Indices: 81225222--81225424 Score: 264
Period size: 27 Copynumber: 7.5 Consensus size: 27
81225212 ATTACCAAAG
* *
81225222 TACCCTCGATTAATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
81225249 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * **
81225276 TGCCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
81225303 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
81225330 TACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* *
81225357 TACCCTCGATTTACTGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
81225384 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
81225411 TACCCTCGTTTTAC
1 TACCCTCGATTTAC
81225425 CCTTGATTTA
Statistics
Matches: 150, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:81225269 original size:54 final size:54
Alignment explanation
Indices: 81225195--81225642 Score: 421
Period size: 54 Copynumber: 8.1 Consensus size: 54
81225185 ATTACTAAAA
* * * *** * * *
81225195 TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTAATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * **
81225249 TACCCTCGATTTACAGAATTACTATTTTGCCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * *
81225303 TACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT-ATTT
* * *
81225357 TACCCTCGATTTACTGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTACCCTCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACA-AA--A-----TTA--CT-ATTT
* * *** * *
81225422 TACCCTTGATTTACAAAATTATTGTTTTACCCTCTATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * * *
81225476 TACCCTCGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
* * *
81225530 TATCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
** * * * * *
81225584 TACGATCGATTTATAGAATTACCGTTTTACCCTTGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
81225638 TACCC
1 TACCC
81225643 ATAGGGTGTT
Statistics
Matches: 333, Mismatches: 49, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
54 279 0.84
55 4 0.01
57 4 0.01
62 4 0.01
64 2 0.01
65 40 0.12
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTT
Found at i:81225363 original size:81 final size:80
Alignment explanation
Indices: 81225195--81225642 Score: 439
Period size: 81 Copynumber: 5.4 Consensus size: 80
81225185 ATTACTAAAA
* * *** * *
81225195 TACCCTCGACTTATAAAATTACCAAAGTACCCTCGATTAATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* *
81225260 TACAGAATTACTATTT
66 TACAAAATTAC-GTTT
* * *
81225276 TGCCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
81225341 TACAAAATTATCGTTT
66 TACAAAATTA-CGTTT
** *
81225357 TACCCTCGATTTACTGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTACCCTCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTAC-----TA------TTT
* *
81225422 TACCCTTGATTTACAAAATTATTGTTT
55 TACCCTCGATTTACAAAATTA-CGTTT
* ** * * *
81225449 TACCCTCTATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTA-TCGTTTTACCCTCAAT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACT-ATTTTACCCTCGAT
*
81225513 TTACAAAATTACTATTT
65 TTACAAAATTAC-GTTT
* * * **
81225530 TATCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACGATCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* *
81225595 TATAGAATTACCGTTT
66 TACAAAATTA-CGTTT
* *
81225611 TACCCTTGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCC
81225643 ATAGGGTGTT
Statistics
Matches: 301, Mismatches: 50, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
81 226 0.75
82 3 0.01
86 3 0.01
92 69 0.23
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TACAAAATTACGTTT
Found at i:81225420 original size:65 final size:65
Alignment explanation
Indices: 81225351--81225489 Score: 188
Period size: 65 Copynumber: 2.1 Consensus size: 65
81225341 TACAAAATTA
** * *
81225351 TCGTTTTACCCTCGATTTACTGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTACCC
1 TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCC
* *** *
81225416 TCGTTTTACCCTTGATTTACAAAATTATTGTTTTACCCTCTATTTACAAAATTACTGTTTTACCC
1 TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCC
*
81225481 TCGATTTAC
1 TCGTTTTAC
81225490 AAAATTATCG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (65 bp):
TCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAAAATTACTGTTTTACCC
Found at i:81225448 original size:27 final size:27
Alignment explanation
Indices: 81225418--81225642 Score: 245
Period size: 27 Copynumber: 8.3 Consensus size: 27
81225408 TTTTACCCTC
* *
81225418 GTTTTACCCTTGATTTACAAAATTATT
1 GTTTTACCCTCGATTTACAAAATTACT
*
81225445 GTTTTACCCTCTATTTACAAAATTACT
1 GTTTTACCCTCGATTTACAAAATTACT
81225472 GTTTTACCCTCGATTTACAAAATTA-T
1 GTTTTACCCTCGATTTACAAAATTACT
*
81225498 CGTTTTACCCTCAATTTACAAAATTACT
1 -GTTTTACCCTCGATTTACAAAATTACT
* * * *
81225526 ATTTTATCCTCGATTTACAGAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
* * *
81225553 ATTTTACCCTCGATTTATAGAATTACT
1 GTTTTACCCTCGATTTACAAAATTACT
* ** * * *
81225580 ATTTTACGATCGATTTATAGAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
* * *
81225607 GTTTTACCCTTGATTTATAAAATTACC
1 GTTTTACCCTCGATTTACAAAATTACT
*
81225634 ATTTTACCC
1 GTTTTACCC
81225643 ATAGGGTGTT
Statistics
Matches: 174, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 172 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (27 bp):
GTTTTACCCTCGATTTACAAAATTACT
Found at i:81225461 original size:119 final size:119
Alignment explanation
Indices: 81225298--81225642 Score: 336
Period size: 119 Copynumber: 3.0 Consensus size: 119
81225288 ACAAAATTAC
*
81225298 CGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTA-TCGTTTTACCC
1 CGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACT-GTTTTACCC
** * * * *
81225362 TCGATTTACTGAATTACCATTTTACCTTCGATTTACAGAATTACTGTTTTACCCT
65 TCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCCT
** * * *
81225417 CGTTTTACCCTTGATTTACAAAATTATTGTTTTACCCTCTATTTACAAAATTACTGTTTTACCCT
1 CGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCT
* *
81225482 CGATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACTATTTTA----
66 CGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCCT
* * * * * * **
81225532 -----T--CCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACGAT
1 CGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCT
* * * ** * *
81225590 CGATTTATAGAATTACCGTTTTACCCTTGATTTATAAAATTACCATTTTACCC
66 CGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCC
81225643 ATAGGGTGTT
Statistics
Matches: 190, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
108 89 0.47
110 1 0.01
119 99 0.52
120 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (119 bp):
CGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTACCCT
CGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACTATTTTACCCT
Found at i:81225462 original size:38 final size:39
Alignment explanation
Indices: 81225381--81225455 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 39
81225371 TGAATTACCA
*
81225381 TTTTA-CCTTCGATTTACAGAATTACTGTTTTACCCTCG
1 TTTTACCCTTCGATTTACAAAATTACTGTTTTACCCTCG
*
81225419 TTTTACCCTT-GATTTACAAAATTATTGTTTTACCCTC
1 TTTTACCCTTCGATTTACAAAATTACTGTTTTACCCTC
81225456 TATTTACAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.47
Consensus pattern (39 bp):
TTTTACCCTTCGATTTACAAAATTACTGTTTTACCCTCG
Found at i:81225515 original size:146 final size:146
Alignment explanation
Indices: 81225273--81225569 Score: 452
Period size: 146 Copynumber: 2.0 Consensus size: 146
81225263 AGAATTACTA
* *
81225273 TTTTGCCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAGAATTACTATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCG
* **
81225338 ATTTACAAAATTATCGTTTTACCCTCGATTTACTGAATTACCATTTTA-CCTTCGATTTACAGAA
66 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCC-TCGATTTACAGAA
**
81225402 TTACTGTTTTACCCTCG
130 TTACCATTTTACCCTCG
* ** * *
81225419 TTTTACCCTTGATTTACAAAATTATTGTTTTACCCTCTATTTACAAAATTACTGTTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCG
*
81225484 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACTATTTTATCCTCGATTTACAGAAT
66 ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCCTCGATTTACAGAAT
81225549 TACCATTTTACCCTCG
131 TACCATTTTACCCTCG
*
81225565 ATTTA
1 TTTTA
81225570 TAGAATTACT
Statistics
Matches: 136, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
146 134 0.99
147 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (146 bp):
TTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTACAAAATTACTATTTTACCCTCG
ATTTACAAAATTATCGTTTTACCCTCAATTTACAAAATTACCATTTTATCCTCGATTTACAGAAT
TACCATTTTACCCTCG
Found at i:81225922 original size:27 final size:26
Alignment explanation
Indices: 81225878--81225929 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81225868 CTCGCTGCAA
*
81225878 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
81225905 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
81225930 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:81226010 original size:73 final size:67
Alignment explanation
Indices: 81225859--81226018 Score: 194
Period size: 73 Copynumber: 2.3 Consensus size: 67
81225849 GAGGAAGCGT
* * *
81225859 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
81225924 TA
66 TA
* * * *
81225926 TCTGGCAGCCTCGCTGCATTCTGGTGGCTTTGCCACATATATATATATCTGTTCTGGTGTCCTAG
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC------ATATATCTGTTCTGGTGACCTAG
81225991 CCACAATA
60 CCACAATA
*
81225999 TCTGGCAGCCTCACTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
81226019 TTCTATGGTG
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
67 33 0.42
73 45 0.58
ACGTcount: A:0.19, C:0.29, G:0.21, T:0.31
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:81226156 original size:31 final size:31
Alignment explanation
Indices: 81226121--81226193 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
81226111 TTGCATTCAC
* *
81226121 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
* *
81226152 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
81226183 ATTCTGATTCT
1 ATTCTGATTCT
81226194 CATTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:81226160 original size:6 final size:6
Alignment explanation
Indices: 81226121--81226214 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
81226111 TTGCATTCAC
* * *
81226121 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
81226170 -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
81226215 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81248494 original size:20 final size:20
Alignment explanation
Indices: 81248462--81248504 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
81248452 CATTTATCTG
*
81248462 ATACCATCTATTCTCAATCA
1 ATACCATCTATTCACAATCA
*
81248482 ATACCAT-TCATTCACATTCA
1 ATACCATCT-ATTCACAATCA
81248502 ATA
1 ATA
81248505 TGTACTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.37, C:0.28, G:0.00, T:0.35
Consensus pattern (20 bp):
ATACCATCTATTCACAATCA
Found at i:81249947 original size:26 final size:26
Alignment explanation
Indices: 81249903--81249988 Score: 79
Period size: 26 Copynumber: 3.4 Consensus size: 26
81249893 TCGAGTTGAA
*
81249903 CAGTAAGCT-CATACAAGCTGATATAT
1 CAGTAAGCTCCA-ACGAGCTGATATAT
* *
81249929 CAGTAAGCTCCAATGAGCTGA-AAAT
1 CAGTAAGCTCCAACGAGCTGATATAT
* **
81249954 -AGTAAGATCTTACGAGCTGATATAT
1 CAGTAAGCTCCAACGAGCTGATATAT
*
81249979 CGGTAAGCTC
1 CAGTAAGCTC
81249989 ATGTGAGCTA
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
24 16 0.34
25 6 0.13
26 23 0.49
27 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (26 bp):
CAGTAAGCTCCAACGAGCTGATATAT
Found at i:81252744 original size:18 final size:16
Alignment explanation
Indices: 81252713--81252746 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
81252703 AATAAGATAA
81252713 AATTTTATTTTTAATT
1 AATTTTATTTTTAATT
81252729 AATTATTATCTTTTAATT
1 AATT-TTAT-TTTTAATT
81252747 TTTGTGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTAATT
Found at i:81257079 original size:21 final size:20
Alignment explanation
Indices: 81257055--81257093 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
81257045 ATAATATTAA
81257055 ATTTCAAAAAATATTAAAATT
1 ATTTCAAAAAA-ATTAAAATT
* *
81257076 ATTTCCACAAAATTAAAA
1 ATTTCAAAAAAATTAAAA
81257094 ATTCTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTCAAAAAAATTAAAATT
Found at i:81263565 original size:13 final size:13
Alignment explanation
Indices: 81263547--81263610 Score: 76
Period size: 13 Copynumber: 4.9 Consensus size: 13
81263537 AGTTTGACAA
81263547 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
81263560 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
81263573 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
*
81263586 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
81263599 TGTTTTTGAAAA
1 TGCTTTTGAAAA
81263611 ATTTGGTTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
12 2 0.05
13 38 0.90
14 2 0.05
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:81263609 original size:26 final size:26
Alignment explanation
Indices: 81263550--81263610 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
81263540 TTGACAATGC
81263550 TTTTGAAAAGTGCTTTTGAGAAGTGT
1 TTTTGAAAAGTGCTTTTGAGAAGTGT
* *
81263576 TGTGGAAAAGTGCTTTTGAGAAGTGT
1 TTTTGAAAAGTGCTTTTGAGAAGTGT
81263602 TTTTGAAAA
1 TTTTGAAAA
81263611 ATTTGGTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.03, G:0.28, T:0.39
Consensus pattern (26 bp):
TTTTGAAAAGTGCTTTTGAGAAGTGT
Found at i:81265462 original size:13 final size:13
Alignment explanation
Indices: 81265444--81265470 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81265434 AAAATTCCAA
81265444 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
81265457 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
81265470 A
1 A
81265471 TTAAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:81266614 original size:17 final size:17
Alignment explanation
Indices: 81266592--81266626 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81266582 AATAGGGAAA
*
81266592 GTAATCTTAAAAGATTT
1 GTAATCTGAAAAGATTT
*
81266609 GTAATCTGATAAGATTT
1 GTAATCTGAAAAGATTT
81266626 G
1 G
81266627 ATTTTATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (17 bp):
GTAATCTGAAAAGATTT
Found at i:81268997 original size:39 final size:40
Alignment explanation
Indices: 81268954--81269069 Score: 173
Period size: 39 Copynumber: 3.0 Consensus size: 40
81268944 CATGTTTTTG
**
81268954 AGTATTGTGAGGTATGCTTGAATGTTATGTGATTATA-CA
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATCA
* *
81268993 AGTATTGTGATATATGCTCGAATGTTATGTAATTATATCA
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATCA
*
81269033 A-TATTGTGATATATGCTTAAATGTTATGTGATTATAT
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATAT
81269070 GTGTAATGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 66 0.96
40 3 0.04
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (40 bp):
AGTATTGTGATATATGCTTGAATGTTATGTGATTATATCA
Found at i:81269080 original size:39 final size:39
Alignment explanation
Indices: 81268954--81269092 Score: 163
Period size: 39 Copynumber: 3.6 Consensus size: 39
81268944 CATGTTTTTG
** * *
81268954 AGTATTGTGAGGTATGCTTGAATGTTATGTGATTATACA
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
** *
81268993 AGTATTGTGATATATGCTCGAATGTTATGTAATTATATCA
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATAT-A
*
81269033 A-TATTGTGATATATGCTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
* * *
81269071 TGTAATGTGATACATGCTTAAA
1 AGTATTGTGATATATGCTTAAA
81269093 ACTAAATATG
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 84 0.98
40 2 0.02
ACGTcount: A:0.32, C:0.06, G:0.20, T:0.42
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGATTATATA
Found at i:81273390 original size:18 final size:18
Alignment explanation
Indices: 81273367--81273402 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81273357 TTTTTCATAG
81273367 ATGAATCATCAAGAATAT
1 ATGAATCATCAAGAATAT
81273385 ATGAATCATCAAGAATAT
1 ATGAATCATCAAGAATAT
81273403 CTACTAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (18 bp):
ATGAATCATCAAGAATAT
Found at i:81276720 original size:40 final size:40
Alignment explanation
Indices: 81276562--81276739 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
81276552 CGGATGGTAA
* * *
81276562 CCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
81276602 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81276642 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81276682 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
81276722 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81276740 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 16 0.12
40 111 0.87
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81284695 original size:40 final size:40
Alignment explanation
Indices: 81284636--81284813 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
81284626 CGGATGGTAA
* *
81284636 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA-T
* *
81284676 CCAGGCTAAGTCCCAAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
*
81284716 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
* *
81284756 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTA-CTATAT
*
81284796 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81284814 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 109 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
Found at i:81291144 original size:40 final size:40
Alignment explanation
Indices: 81291089--81291168 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
81291079 GCATCTCGAG
81291089 CATGCTAAACATGAGGATGATCAAGAAATGACGCGACACC
1 CATGCTAAACATGAGGATGATCAAGAAATGACGCGACACC
*
81291129 CATGCTAAACATGAGGATGATCAAGAAATGACGCGGCACC
1 CATGCTAAACATGAGGATGATCAAGAAATGACGCGACACC
81291169 TACCTTCCTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.15
Consensus pattern (40 bp):
CATGCTAAACATGAGGATGATCAAGAAATGACGCGACACC
Found at i:81291532 original size:20 final size:19
Alignment explanation
Indices: 81291477--81291532 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 19
81291467 TTATTTATTA
*
81291477 TTTTTATTTCCAATTTTATAT
1 TTTTTATTT-C-ATTTAATAT
81291498 TTATTTATCTT-ATTTAAGTAT
1 TT-TTTAT-TTCATTTAA-TAT
81291519 TTTTTATTTCATTT
1 TTTTTATTTCATTT
81291533 TCCTTTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.07
20 14 0.47
21 7 0.23
22 5 0.17
23 2 0.07
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTTATTTCATTTAATAT
Found at i:81302226 original size:73 final size:73
Alignment explanation
Indices: 81302101--81302247 Score: 231
Period size: 73 Copynumber: 2.0 Consensus size: 73
81302091 TTCCAATAAG
* * *
81302101 TAGAATGTCATTGACAGATAGAACGAAAAAGACCACCTTTCCATCCCCCAAGTGTTTGTAGCCAC
1 TAGAATGTCATCGACAGATAGAACGAAAAAGACCACCTTTCCATCCCCCAAGTGTTTATAACCAC
81302166 AAGGTTCA
66 AAGGTTCA
* * **
81302174 TAGAATGTCATCGACATATAGAACGAGAAAGACCACCTTTCCATCCTTCAAGTGTTTATAACCAC
1 TAGAATGTCATCGACAGATAGAACGAAAAAGACCACCTTTCCATCCCCCAAGTGTTTATAACCAC
81302239 AAGGTTCA
66 AAGGTTCA
81302247 T
1 T
81302248 CTACATTTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 67 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (73 bp):
TAGAATGTCATCGACAGATAGAACGAAAAAGACCACCTTTCCATCCCCCAAGTGTTTATAACCAC
AAGGTTCA
Found at i:81305575 original size:79 final size:79
Alignment explanation
Indices: 81305444--81305601 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 79
81305434 TCTTTTGAAG
* *
81305444 ATAGAATTTCTTAACCTATCACATGATAATGCCTACCATAAGGGTTGGTCCAATTATCATTTGAT
1 ATAGAATTTCTTAACCTATCACATGATAATACCTACCACAAGGGTTGGTCCAATTATCATTTGAT
81305509 CACAAGGGAATTCT
66 CACAAGGGAATTCT
* *
81305523 ATAGAATTTCTTGACCTATCGCATGATAATACCTACCACAAGGGTTGGTCCAATTATCATTTGAT
1 ATAGAATTTCTTAACCTATCACATGATAATACCTACCACAAGGGTTGGTCCAATTATCATTTGAT
81305588 CACAAGGGAATTCT
66 CACAAGGGAATTCT
81305602 TCTTTCTTTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (79 bp):
ATAGAATTTCTTAACCTATCACATGATAATACCTACCACAAGGGTTGGTCCAATTATCATTTGAT
CACAAGGGAATTCT
Found at i:81308269 original size:25 final size:25
Alignment explanation
Indices: 81308233--81308280 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
81308223 TCTTATCCAA
*
81308233 ATTTTACTCCAGTAAAATTTTGACG
1 ATTTTACCCCAGTAAAATTTTGACG
81308258 ATTTTACCCCAGTAAAATTTTGA
1 ATTTTACCCCAGTAAAATTTTGA
81308281 GAAAAATCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (25 bp):
ATTTTACCCCAGTAAAATTTTGACG
Found at i:81312404 original size:30 final size:30
Alignment explanation
Indices: 81312368--81312425 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
81312358 TCAACCATTA
*
81312368 TTTTTTAGTCATTATTATTAAATGTGATAT
1 TTTTTTAATCATTATTATTAAATGTGATAT
* *
81312398 TTTTTTAATCGTTATTATTAGATGTGAT
1 TTTTTTAATCATTATTATTAAATGTGAT
81312426 CATTAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.57
Consensus pattern (30 bp):
TTTTTTAATCATTATTATTAAATGTGATAT
Found at i:81313227 original size:51 final size:51
Alignment explanation
Indices: 81313172--81313296 Score: 153
Period size: 50 Copynumber: 2.4 Consensus size: 51
81313162 TAGATTTCAA
* * **
81313172 TTTTTAGGAATTTCATTTGTTTTATTTGTTAATATATAATTTAATTTTGGTT
1 TTTTTAGGAA-GTCATTTGTTTTATTTGTTAAGATATAATTTAATTTTAATT
* *
81313224 TTTTTA-GAAGTCATTTTTTTTATTTGTTTAGATATAATTTAATTTTAATT
1 TTTTTAGGAAGTCATTTGTTTTATTTGTTAAGATATAATTTAATTTTAATT
* *
81313274 GTTTTAGGAAGCTAATTTGTTTT
1 TTTTTAGGAAG-TCATTTGTTTT
81313297 TATTCCTCTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
50 40 0.65
51 7 0.11
52 15 0.24
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (51 bp):
TTTTTAGGAAGTCATTTGTTTTATTTGTTAAGATATAATTTAATTTTAATT
Found at i:81313263 original size:24 final size:25
Alignment explanation
Indices: 81313191--81313277 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 25
81313181 ATTTCATTTG
* *
81313191 TTTTATTTGTTAATATATAATTTAAT
1 TTTTATTTGTTTAGATATAATTT-AT
** * *
81313217 TTTGGTTTTTTTAGA-AGTCATTT-T
1 TTTTATTTGTTTAGATA-TAATTTAT
*
81313241 TTTTATTTGTTTAGATATAATTTAA
1 TTTTATTTGTTTAGATATAATTTAT
*
81313266 TTTTAATTGTTT
1 TTTTATTTGTTT
81313278 TAGGAAGCTA
Statistics
Matches: 46, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
24 18 0.39
25 13 0.28
26 15 0.33
ACGTcount: A:0.26, C:0.01, G:0.09, T:0.63
Consensus pattern (25 bp):
TTTTATTTGTTTAGATATAATTTAT
Found at i:81315780 original size:40 final size:40
Alignment explanation
Indices: 81315723--81315940 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
81315713 CGGATGGTAA
* * *
81315723 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
81315763 CCGGGCTAAGTCCCGAAGGCATTTGTGTGGGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81315803 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81315843 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81315883 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
81315923 -CTGGTTAATTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81315941 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 145 0.89
41 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81318551 original size:16 final size:16
Alignment explanation
Indices: 81318530--81318562 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81318520 TGCTAACAAA
*
81318530 TTCTAAACAGACTAAC
1 TTCTAAACAAACTAAC
81318546 TTCTAAACAAACTAAC
1 TTCTAAACAAACTAAC
81318562 T
1 T
81318563 ACTCCAACTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.27
Consensus pattern (16 bp):
TTCTAAACAAACTAAC
Found at i:81321998 original size:12 final size:12
Alignment explanation
Indices: 81321981--81322005 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81321971 TGTCCAACAA
81321981 CTTGCCATATGT
1 CTTGCCATATGT
81321993 CTTGCCATATGT
1 CTTGCCATATGT
81322005 C
1 C
81322006 CTGCTGAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.16, T:0.40
Consensus pattern (12 bp):
CTTGCCATATGT
Found at i:81322650 original size:12 final size:12
Alignment explanation
Indices: 81322633--81322660 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
81322623 GTACTCTCTC
81322633 TTTTTTTTCAAT
1 TTTTTTTTCAAT
81322645 TTTTTTTTCAAT
1 TTTTTTTTCAAT
81322657 TTTT
1 TTTT
81322661 GTCTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:81322966 original size:18 final size:16
Alignment explanation
Indices: 81322945--81322983 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
81322935 TTATGATATT
81322945 AATATATTAATTAATAAA
1 AATATATTAA-T-ATAAA
*
81322963 AATATATTTATATAAA
1 AATATATTAATATAAA
81322979 AATAT
1 AATAT
81322984 TTATTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 1 0.05
18 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATATATTAATATAAA
Found at i:81334301 original size:51 final size:51
Alignment explanation
Indices: 81334225--81334375 Score: 185
Period size: 51 Copynumber: 3.0 Consensus size: 51
81334215 CCGTGACAAC
* *
81334225 GGTATATGGCATAAGATCATAGATGAAAGAGGATATGATAGTCTAGTATAA
1 GGTATATGGCGTAAGATCATAGATGAAAGAGGATATGACAGTCTAGTATAA
* * * * *
81334276 GGTATATGGCGTAAGATTATAGATGAAACAAGCTATGACAGTCTGGTATAA
1 GGTATATGGCGTAAGATCATAGATGAAAGAGGATATGACAGTCTAGTATAA
* * * * * *
81334327 GGTATATGGCGTAAAACCATAGATAAAAGAGGCTATAACAGTCTGGTAT
1 GGTATATGGCGTAAGATCATAGATGAAAGAGGATATGACAGTCTAGTAT
81334376 GATGTACGTA
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 86 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.26
Consensus pattern (51 bp):
GGTATATGGCGTAAGATCATAGATGAAAGAGGATATGACAGTCTAGTATAA
Found at i:81351915 original size:41 final size:42
Alignment explanation
Indices: 81351870--81351968 Score: 101
Period size: 42 Copynumber: 2.3 Consensus size: 42
81351860 ACACGAACAG
*
81351870 AGACACGGGTGTGTGTCTCAGCT-GTGTGTGCTACACGGCCA
1 AGACACGGGTGTGTGTCTCAGCTCGTATGTGCTACACGGCCA
** *** * *
81351911 AGACACACGCCCGTGTCTCTGCTCGTATGTGCTACACGGCCT
1 AGACACGGGTGTGTGTCTCAGCTCGTATGTGCTACACGGCCA
81351953 AGAACACGGCGTGTGT
1 AG-ACACGG-GTGTGT
81351969 CTTGGCCGTG
Statistics
Matches: 42, Mismatches: 13, Indels: 3
0.72 0.22 0.05
Matches are distributed among these distances:
41 17 0.40
42 18 0.43
43 4 0.10
44 3 0.07
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (42 bp):
AGACACGGGTGTGTGTCTCAGCTCGTATGTGCTACACGGCCA
Found at i:81351943 original size:42 final size:40
Alignment explanation
Indices: 81351882--81351960 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 40
81351872 ACACGGGTGT
*
81351882 GTGTCTCAGCTGTGTGTGCTACACGGCCAAGACACACGCCC
1 GTGTCTCAGCTGTATGTGCTACACGGCCAAGA-ACACGCCC
* *
81351923 GTGTCTCTGCTCGTATGTGCTACACGGCCTAGAACACG
1 GTGTCTCAGCT-GTATGTGCTACACGGCCAAGAACACG
81351961 GCGTGTGTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 15 0.44
42 19 0.56
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.23
Consensus pattern (40 bp):
GTGTCTCAGCTGTATGTGCTACACGGCCAAGAACACGCCC
Found at i:81351969 original size:42 final size:41
Alignment explanation
Indices: 81351880--81351970 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 41
81351870 AGACACGGGT
*
81351880 GTGTGTCTCAGCTGTGTGTGCTACACGGCCAAGACACACGC
1 GTGTGTCTCAGCTGTATGTGCTACACGGCCAAGACACACGC
** * *
81351921 CCGTGTCTCTGCTCGTATGTGCTACACGGCCTAGA-ACACGGC
1 GTGTGTCTCAGCT-GTATGTGCTACACGGCCAAGACACAC-GC
81351963 GTGTGTCT
1 GTGTGTCT
81351971 TGGCCGTGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
41 14 0.34
42 27 0.66
ACGTcount: A:0.16, C:0.30, G:0.29, T:0.25
Consensus pattern (41 bp):
GTGTGTCTCAGCTGTATGTGCTACACGGCCAAGACACACGC
Found at i:81358794 original size:13 final size:13
Alignment explanation
Indices: 81358776--81358802 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81358766 TCTATCATCA
81358776 ATGGGCAATTTTT
1 ATGGGCAATTTTT
81358789 ATGGGCAATTTTT
1 ATGGGCAATTTTT
81358802 A
1 A
81358803 CAAACTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (13 bp):
ATGGGCAATTTTT
Found at i:81360747 original size:22 final size:23
Alignment explanation
Indices: 81360661--81360762 Score: 111
Period size: 22 Copynumber: 4.5 Consensus size: 23
81360651 TGAGTTGATG
*
81360661 AACAGTAAGCTCTAATGAGCTGA
1 AACAGTAAGCTCTATTGAGCTGA
* *
81360684 AACGGTAAGCTCTATCGAGCTG-
1 AACAGTAAGCTCTATTGAGCTGA
*
81360706 AACAATAAGCTCTATTGAGCT-A
1 AACAGTAAGCTCTATTGAGCTGA
*
81360728 AACAGTAAGCTC-ATAGGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTGA
**
81360751 AATGGTAAGCTC
1 AACAGTAAGCTC
81360763 CAGTGATCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
21 2 0.03
22 34 0.52
23 30 0.45
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTGA
Found at i:81365358 original size:42 final size:42
Alignment explanation
Indices: 81365281--81365382 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
81365271 CATACAGCCA
*** * *
81365281 AGACACACGCCCGTGT-TCTAGACCGTTTGGCACACACGGCTG
1 AGACACACGCCCGTGTCT-TTTCCCGTGTGGCACACACGGCTC
* *
81365323 AGACACACGCTCGTGTCTTTTCCCGTGTGGTACACACGGCTC
1 AGACACACGCCCGTGTCTTTTCCCGTGTGGCACACACGGCTC
*
81365365 AGATACACGCCCGTGTCT
1 AGACACACGCCCGTGTCT
81365383 ATGCCCTTGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 49 0.98
43 1 0.02
ACGTcount: A:0.20, C:0.33, G:0.25, T:0.23
Consensus pattern (42 bp):
AGACACACGCCCGTGTCTTTTCCCGTGTGGCACACACGGCTC
Found at i:81369158 original size:40 final size:40
Alignment explanation
Indices: 81369084--81369294 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
81369074 TCTTCGGAAT
** * *
81369084 TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
81369122 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
*
81369162 TTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
81369202 TTAGCCCGTATATAG-CAACTCGCACAAATGCCTTCGGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * *
81369242 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
81369282 TTAGCCCGGATAT
1 TTAGCCCGGATAT
81369295 CATTCGAATA
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
38 4 0.03
39 16 0.11
40 125 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:81380315 original size:14 final size:14
Alignment explanation
Indices: 81380296--81380323 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81380286 CATTAATTTG
81380296 TCAAGCTACACGTC
1 TCAAGCTACACGTC
81380310 TCAAGCTACACGTC
1 TCAAGCTACACGTC
81380324 GTATAACAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.14, T:0.21
Consensus pattern (14 bp):
TCAAGCTACACGTC
Found at i:81387975 original size:40 final size:40
Alignment explanation
Indices: 81387920--81388186 Score: 480
Period size: 40 Copynumber: 6.7 Consensus size: 40
81387910 AACATTGGAT
81387920 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81387960 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81388000 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
81388040 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
81388080 TATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81388120 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
81388160 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
81388187 ATGTGTTTGC
Statistics
Matches: 217, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:81396792 original size:40 final size:40
Alignment explanation
Indices: 81396737--81397002 Score: 471
Period size: 40 Copynumber: 6.7 Consensus size: 40
81396727 AACATTGGAT
81396737 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81396777 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81396817 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
81396857 CATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* * *
81396897 TATATCCGGGCTATGA-CCGAAGGCAATTATGCGGGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
81396936 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
81396976 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
81397003 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 36 0.17
40 179 0.83
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:81397037 original size:119 final size:119
Alignment explanation
Indices: 81396738--81397002 Score: 449
Period size: 119 Copynumber: 2.2 Consensus size: 119
81396728 ACATTGGATT
* *
81396738 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGCTGATATATCCGGGCTATGA-CCGAAGGCA
*
81396803 ATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
65 ATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
*
81396858 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGCTGATATATCCGGGCTATGACCGAAGGCAA
* *
81396923 TTATGCGGGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAT
66 TTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
* *
81396977 ATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAA
81397003 ATGTGTTTGC
Statistics
Matches: 139, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 85 0.61
120 54 0.39
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (119 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGCTGATATATCCGGGCTATGACCGAAGGCAA
TTATGCGAGATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGAC
Found at i:81404288 original size:21 final size:23
Alignment explanation
Indices: 81404258--81404302 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
81404248 TATATAATCC
*
81404258 AAATTAAATTGTAT-ATGAATTA
1 AAATTAAATTATATCATGAATTA
81404280 AAATT-AATTATATCATGAATTA
1 AAATTAAATTATATCATGAATTA
81404302 A
1 A
81404303 TATACATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (23 bp):
AAATTAAATTATATCATGAATTA
Found at i:81405342 original size:19 final size:20
Alignment explanation
Indices: 81405308--81405348 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
81405298 AACCATTTTA
*
81405308 TTGCATTTAGGTTAATTCAT
1 TTGCATTTAGGTTAATTAAT
81405328 TTGCATTTA-GTTAATTAAT
1 TTGCATTTAGGTTAATTAAT
81405347 TT
1 TT
81405349 AACTTTATCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (20 bp):
TTGCATTTAGGTTAATTAAT
Found at i:81411416 original size:46 final size:46
Alignment explanation
Indices: 81411224--81411417 Score: 134
Period size: 46 Copynumber: 4.2 Consensus size: 46
81411214 TGTGAGCTAC
* * * *
81411224 TGTAAGACGTGTCTGGGACATGCATCGGGCAC-ATTATGAAAGCCT-G
1 TGTAAGACATGTCTGGGACATGCATC-GGCACGA-GATGATAGTCTAG
** *
81411270 TGTAAGACAATGTCTGGGACATGGCATATGCATCGAGA-CA-AGTGCTAG
1 TGTAAGAC-ATGTCTGGGACAT-GCATCGGCA-CGAGATGATAGT-CTAG
* * * *
81411318 TGTAAAACACGT-TCGGGACATGCATCGGCCTCGAGACG-TAAG-CTAG
1 TGTAAGACATGTCT-GGGACATGCATCGG-CACGAGATGAT-AGTCTAG
*
81411364 TATAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC-AG
1 TGTAAGACATGTCTGGGACATGCATCGGC-ACGAGATGATAGTCTAG
81411410 TGTAAGAC
1 TGTAAGAC
81411418 CATATCTAGG
Statistics
Matches: 115, Mismatches: 18, Indels: 30
0.71 0.11 0.18
Matches are distributed among these distances:
45 1 0.01
46 65 0.57
47 32 0.28
48 16 0.14
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCACGAGATGATAGTCTAG
Found at i:81418323 original size:46 final size:45
Alignment explanation
Indices: 81418272--81418389 Score: 123
Period size: 46 Copynumber: 2.6 Consensus size: 45
81418262 ATGAGAGCCT
* *
81418272 GTGTAAGACGATGTC-CGACATGGCATAGGCATCGAGAC-TAGTGTTA
1 GTGTAAGAC-ATGTCGCGACAT-GCATAGGCATCGAGACGTA-AGCTA
* * *
81418318 GTGTAAGACATGTTCGGGACATGCATCGGCCTCGAGACGTAAGCTA
1 GTGTAAGACATG-TCGCGACATGCATAGGCATCGAGACGTAAGCTA
*
81418364 GTGTAAGACATGTCTGAGACATGCAT
1 GTGTAAGACATGTC-GCGACATGCAT
81418390 CAACTACGAG
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
45 5 0.08
46 50 0.81
47 7 0.11
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
GTGTAAGACATGTCGCGACATGCATAGGCATCGAGACGTAAGCTA
Found at i:81420663 original size:24 final size:24
Alignment explanation
Indices: 81420631--81420680 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
81420621 TTGAGTAGTC
*
81420631 TAAATTCCTAGAGGGTCGTGGACT
1 TAAATTCCTAGAGGGTCGTGAACT
81420655 TAAATTCCTAGAGGGTCGTGAACT
1 TAAATTCCTAGAGGGTCGTGAACT
81420679 TA
1 TA
81420681 CTCGTTACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (24 bp):
TAAATTCCTAGAGGGTCGTGAACT
Found at i:81423974 original size:15 final size:15
Alignment explanation
Indices: 81423954--81423983 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81423944 CATGTGATAG
81423954 GGAAACTATTTCATT
1 GGAAACTATTTCATT
81423969 GGAAACTATTTCATT
1 GGAAACTATTTCATT
81423984 CTTTTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
GGAAACTATTTCATT
Found at i:81427855 original size:28 final size:28
Alignment explanation
Indices: 81427837--81427899 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
81427827 CAAAGGTTAT
*
81427837 TCTTTTCAGAGTTCGCCACAAATACTAA
1 TCTTTTCAGAGTTCGCCACAAAGACTAA
* * **
81427865 TCTTTTTAGAGTTTGCCACAAAGACTTT
1 TCTTTTCAGAGTTCGCCACAAAGACTAA
81427893 TCTTTTC
1 TCTTTTC
81427900 TAACATGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.41
Consensus pattern (28 bp):
TCTTTTCAGAGTTCGCCACAAAGACTAA
Found at i:81432721 original size:53 final size:51
Alignment explanation
Indices: 81432653--81432786 Score: 162
Period size: 52 Copynumber: 2.6 Consensus size: 51
81432643 ATACCAATGT
* * *
81432653 CATATCCCAGATATGGTTTTATACGGAATCACATT-ATCACATCACACCGATGC
1 CATAGCCCAGCTATGGTCTTATACGGAA--AC-TTAATCACATCACACCGATGC
* ***
81432706 CATAGCCCAGCTATGGTCTTATACGGGAACTTGAATCACATTGTACCGATGC
1 CATAGCCCAGCTATGGTCTTATACGGAAACTT-AATCACATCACACCGATGC
81432758 CATAGCCCAGCTATGGTCTTATACGGAAA
1 CATAGCCCAGCTATGGTCTTATACGGAAA
81432787 TACATATCAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
50 2 0.03
51 2 0.03
52 43 0.61
53 24 0.34
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (51 bp):
CATAGCCCAGCTATGGTCTTATACGGAAACTTAATCACATCACACCGATGC
Found at i:81438322 original size:25 final size:24
Alignment explanation
Indices: 81438294--81438346 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
81438284 ACACAAACAC
*
81438294 GGCTCTTTATGAGCGTCCTAATAT
1 GGCTATTTATGAGCGTCCTAATAT
* * *
81438318 AGGCTATTTTTGAGCTTCCTGATAT
1 -GGCTATTTATGAGCGTCCTAATAT
81438343 GGCT
1 GGCT
81438347 TGCTTGAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (24 bp):
GGCTATTTATGAGCGTCCTAATAT
Found at i:81442506 original size:27 final size:27
Alignment explanation
Indices: 81442476--81442530 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
81442466 AAAACTAACC
81442476 TAAAACTCAAAGTTTCCTTATATGCTA
1 TAAAACTCAAAGTTTCCTTATATGCTA
81442503 TAAAACTCAAAGTTTCCTTATATGCTA
1 TAAAACTCAAAGTTTCCTTATATGCTA
81442530 T
1 T
81442531 CATACCTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.38
Consensus pattern (27 bp):
TAAAACTCAAAGTTTCCTTATATGCTA
Found at i:81442603 original size:17 final size:17
Alignment explanation
Indices: 81442581--81442613 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
81442571 ACTTTTATAT
81442581 ATTTTTATT-ATTTTTTA
1 ATTTTT-TTAATTTTTTA
81442598 ATTTTTTTAATTTTTT
1 ATTTTTTTAATTTTTT
81442614 TATGCTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (17 bp):
ATTTTTTTAATTTTTTA
Found at i:81442662 original size:9 final size:9
Alignment explanation
Indices: 81442573--81442662 Score: 51
Period size: 9 Copynumber: 9.6 Consensus size: 9
81442563 ATAATTTCAC
81442573 TTTTATATAT
1 TTTTATA-AT
*
81442583 TTTTATTAT
1 TTTTATAAT
81442592 TTTT-TAAT
1 TTTTATAAT
*
81442600 TTTTTTAAT
1 TTTTATAAT
*
81442609 TTTT-TTAT
1 TTTTATAAT
*
81442617 GCTTTTATGAT
1 --TTTTATAAT
*
81442628 TTTCTAT-AG
1 TTT-TATAAT
81442637 TTTTATGAAATT
1 TTTTAT--AA-T
81442649 TTTTATAAT
1 TTTTATAAT
81442658 TTTTA
1 TTTTA
81442663 AATATAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 19
0.72 0.07 0.21
Matches are distributed among these distances:
8 13 0.20
9 27 0.42
10 15 0.23
11 4 0.06
12 6 0.09
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.69
Consensus pattern (9 bp):
TTTTATAAT
Found at i:81443004 original size:19 final size:19
Alignment explanation
Indices: 81442980--81443035 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
81442970 ATGAAATTAC
81442980 TAAAATATTATTTTTTATT
1 TAAAATATTATTTTTTATT
81442999 TAAAATA--AGTTTTATTATT
1 TAAAATATTA-TTTT-TTATT
81443018 TAACAATACTT-TTTTTTA
1 TAA-AATA-TTATTTTTTA
81443036 ATTTTAAAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
17 1 0.03
18 4 0.13
19 15 0.48
20 7 0.23
21 4 0.13
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (19 bp):
TAAAATATTATTTTTTATT
Found at i:81446277 original size:40 final size:40
Alignment explanation
Indices: 81446221--81446490 Score: 400
Period size: 40 Copynumber: 6.8 Consensus size: 40
81446211 GATGATAACG
* *
81446221 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
81446261 GGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
81446301 GGGCTAAGTCCCGAAGGCATTTGTCCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
81446341 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
*
81446381 GGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
**
81446421 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
81446461 GGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
81446491 AGCTATATCC
Statistics
Matches: 212, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 211 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:81454380 original size:40 final size:40
Alignment explanation
Indices: 81454324--81454586 Score: 406
Period size: 40 Copynumber: 6.6 Consensus size: 40
81454314 GATGATAACG
81454324 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81454364 AGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
81454404 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81454444 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81454484 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
81454524 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
81454564 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
81454587 AGCGAGTAGC
Statistics
Matches: 213, Mismatches: 8, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
39 2 0.01
40 209 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:81462864 original size:15 final size:15
Alignment explanation
Indices: 81462844--81462873 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81462834 CATGTGATAG
81462844 GGAAACTATTTCATT
1 GGAAACTATTTCATT
81462859 GGAAACTATTTCATT
1 GGAAACTATTTCATT
81462874 CTTTTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
GGAAACTATTTCATT
Found at i:81466744 original size:28 final size:28
Alignment explanation
Indices: 81466713--81466788 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
81466703 GCAGAATTTT
**
81466713 CCACAAAGGTTATTCTTTTCAGAGTTCG
1 CCACAAAGACTATTCTTTTCAGAGTTCG
* * * *
81466741 CCACAAATACTAATCTTTTTAGAGTTTG
1 CCACAAAGACTATTCTTTTCAGAGTTCG
81466769 CCACAAAGACTATTCTTTTC
1 CCACAAAGACTATTCTTTTC
81466789 TAACATGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (28 bp):
CCACAAAGACTATTCTTTTCAGAGTTCG
Found at i:81471615 original size:51 final size:49
Alignment explanation
Indices: 81471548--81471664 Score: 121
Period size: 51 Copynumber: 2.3 Consensus size: 49
81471538 ATGTCATATC
* *
81471548 CCAGATATGGTTTTATACGGAATCACATT-ATCACATCACACCGATGCCATAG
1 CCAGCTATGGTCTTATACGGAA--AC-TTAATCACAT-ACACCGATGCCATAG
* **
81471600 -CAGCTATGGTCTTATACGGGAACTTGAATCACATTTACCGATGCCATAG
1 CCAGCTATGGTCTTATACGGAAACTT-AATCACATACACCGATGCCATAG
81471649 CCCAGCTATGGTCTTA
1 -CCAGCTATGGTCTTA
81471665 GCATCAAATG
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
48 2 0.04
49 15 0.27
50 7 0.12
51 32 0.57
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
CCAGCTATGGTCTTATACGGAAACTTAATCACATACACCGATGCCATAG
Found at i:81473949 original size:40 final size:40
Alignment explanation
Indices: 81473827--81474085 Score: 379
Period size: 39 Copynumber: 6.6 Consensus size: 40
81473817 GATGATAACG
81473827 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
81473867 -AGCTAAGTCCCGAAGGCATTTGTGCTA-TGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
81473905 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81473945 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81473985 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
81474025 GGGCTAAGT-CCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
81474064 GGGCTAAGT-CCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
81474086 AGCGAGTAGC
Statistics
Matches: 209, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
38 11 0.05
39 101 0.48
40 97 0.46
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:81484842 original size:20 final size:19
Alignment explanation
Indices: 81484814--81484856 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
81484804 CCAAAACTTG
*
81484814 CAACTTACCATAATCTTTCA
1 CAACATACC-TAATCTTTCA
**
81484834 CAACATACCTTCTCTTTCA
1 CAACATACCTAATCTTTCA
81484853 CAAC
1 CAAC
81484857 TAACTTTGCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (19 bp):
CAACATACCTAATCTTTCA
Found at i:81493280 original size:40 final size:40
Alignment explanation
Indices: 81493224--81493486 Score: 415
Period size: 40 Copynumber: 6.6 Consensus size: 40
81493214 GATGATAACG
81493224 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
*
81493264 AGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
81493304 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81493344 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* *
81493384 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
* *
81493424 GGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAAT-TCC
81493464 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
81493487 AGCGAGTAGC
Statistics
Matches: 215, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
39 2 0.01
40 211 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:81495337 original size:6 final size:6
Alignment explanation
Indices: 81495326--81495353 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
81495316 TGTGTTGTAG
81495326 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
81495354 TTTCTTCTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:81496901 original size:18 final size:18
Alignment explanation
Indices: 81496880--81496945 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
81496870 TTGATTGAAA
81496880 TATTTAATTTAATTTATT
1 TATTTAATTTAATTTATT
* *
81496898 TATTTATAATTGAGTATTATTATA
1 TA-TT-TAATT---TAAT-TTATT
*
81496922 TATTTAATTTGATTTATT
1 TATTTAATTTAATTTATT
81496940 TATTTA
1 TATTTA
81496946 TAAATAAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 12
0.69 0.09 0.22
Matches are distributed among these distances:
18 12 0.32
19 4 0.11
20 5 0.14
22 5 0.14
23 5 0.14
24 6 0.16
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTTAATTTAATTTATT
Found at i:81499943 original size:13 final size:13
Alignment explanation
Indices: 81499925--81499950 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81499915 TTACCTCCTA
81499925 CATTTTTTTCTTT
1 CATTTTTTTCTTT
81499938 CATTTTTTTCTTT
1 CATTTTTTTCTTT
81499951 TAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (13 bp):
CATTTTTTTCTTT
Found at i:81503856 original size:11 final size:11
Alignment explanation
Indices: 81503819--81503857 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81503809 CAATAACAAA
81503819 AAAATAATAGT
1 AAAATAATAGT
*
81503830 AACATAATAGT
1 AAAATAATAGT
* *
81503841 GAAATGATAGT
1 AAAATAATAGT
81503852 AAAATA
1 AAAATA
81503858 GGGAGAAAAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.59, C:0.03, G:0.13, T:0.26
Consensus pattern (11 bp):
AAAATAATAGT
Found at i:81507658 original size:41 final size:39
Alignment explanation
Indices: 81507607--81507684 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 39
81507597 TGGAATTTCA
* *
81507607 ATCAAAACTTTTAATTCTGTTTTTATTTTATTTTTTTCCAT
1 ATCAAAACTTTTAATTCTATTTTT-TTAT-TTTTTTTCCAT
81507648 ATCAAAACTTTTAATTCTATTTTTTTATTTTTTTTCC
1 ATCAAAACTTTTAATTCTATTTTTTTATTTTTTTTCC
81507685 TAGGTAAGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 9 0.26
40 3 0.09
41 23 0.66
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (39 bp):
ATCAAAACTTTTAATTCTATTTTTTTATTTTTTTTCCAT
Found at i:81509243 original size:33 final size:32
Alignment explanation
Indices: 81509201--81509273 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 32
81509191 AACGTACTTG
*
81509201 ATTTCCAACAGCAGATACAACGAAAAACTGTTA
1 ATTTCCAACAGCAAATACAACGAAAAA-TGTTA
* * * *
81509234 ATTTCCAACAGCAAATACTACGGAAAATTTTG
1 ATTTCCAACAGCAAATACAACGAAAAATGTTA
81509266 ATTTCCAA
1 ATTTCCAA
81509274 AAGGAAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
32 11 0.31
33 24 0.69
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (32 bp):
ATTTCCAACAGCAAATACAACGAAAAATGTTA
Found at i:81510679 original size:5 final size:5
Alignment explanation
Indices: 81510671--81510737 Score: 90
Period size: 5 Copynumber: 14.2 Consensus size: 5
81510661 TATTTTTCTT
81510671 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TA-T- TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
81510719 TTATTA T-TT- TATTA T-TTA T
1 -TATTA TATTA TATTA TATTA T
81510738 TACTTTATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
3 3 0.05
4 10 0.18
5 39 0.68
6 5 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TATTA
Found at i:81510739 original size:15 final size:16
Alignment explanation
Indices: 81510670--81510746 Score: 83
Period size: 15 Copynumber: 5.1 Consensus size: 16
81510660 TTATTTTTCT
*
81510670 TTATTATATTATATTA
1 TTATTATATTATTTTA
*
81510686 -TATTATATTATATTA
1 TTATTATATTATTTTA
*
81510701 -TATTATATTATTATA
1 TTATTATATTATTTTA
81510716 TTA-T-TATTATTTTA
1 TTATTATATTATTTTA
*
81510730 TTATT-TATTACTTTA
1 TTATTATATTATTTTA
81510745 TT
1 TT
81510747 TTTGGATATT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
14 12 0.22
15 41 0.75
16 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (16 bp):
TTATTATATTATTTTA
Found at i:81510744 original size:8 final size:7
Alignment explanation
Indices: 81510670--81510746 Score: 61
Period size: 8 Copynumber: 10.3 Consensus size: 7
81510660 TTATTTTTCT
81510670 TTATTATA
1 TTATT-TA
81510678 TTATATTA
1 TTAT-TTA
81510686 -TATTATA
1 TTATT-TA
81510693 TTATATTA
1 TTAT-TTA
81510701 -TATTATA
1 TTATT-TA
81510708 TTATTATA
1 TTATT-TA
81510716 TTA-TTA
1 TTATTTA
81510722 TTATTTTA
1 TTA-TTTA
81510730 TTATTTA
1 TTATTTA
81510737 TTACTTTA
1 TTA-TTTA
81510745 TT
1 TT
81510747 TTTGGATATT
Statistics
Matches: 60, Mismatches: 0, Indels: 18
0.77 0.00 0.23
Matches are distributed among these distances:
6 7 0.12
7 18 0.30
8 33 0.55
9 2 0.03
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (7 bp):
TTATTTA
Found at i:81513549 original size:3 final size:3
Alignment explanation
Indices: 81513543--81513578 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
81513533 TAAATAGTAG
* *
81513543 TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
81513579 AGAAAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:81514546 original size:40 final size:40
Alignment explanation
Indices: 81514502--81514582 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
81514492 ACGCTTAGCT
81514502 TTCTCAAACGAGTATTCATCGTTTCTTCGCATTACGGGAC
1 TTCTCAAACGAGTATTCATCGTTTCTTCGCATTACGGGAC
81514542 TTCTCAAACGAGTATTCATCGTTTCTTCGCATTACGGGAC
1 TTCTCAAACGAGTATTCATCGTTTCTTCGCATTACGGGAC
81514582 T
1 T
81514583 AACGTTTCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (40 bp):
TTCTCAAACGAGTATTCATCGTTTCTTCGCATTACGGGAC
Found at i:81517448 original size:29 final size:29
Alignment explanation
Indices: 81517398--81517468 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 29
81517388 TGCTCAAACT
* *
81517398 AAATTTT-CAAAAA-AGATCATTTTTTTA
1 AAATTTTACAAAAATAGACCATTTTTTGA
81517425 AAATTTTACAAAAATAGACCATTTTTTGA
1 AAATTTTACAAAAATAGACCATTTTTTGA
*
81517454 AAA-TTTACAAGAATA
1 AAATTTTACAAAAATA
81517469 AGCCTTTATA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.18
28 17 0.44
29 15 0.38
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (29 bp):
AAATTTTACAAAAATAGACCATTTTTTGA
Found at i:81519122 original size:31 final size:32
Alignment explanation
Indices: 81519057--81519119 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
81519047 ATAAAATGAT
81519057 TATTTTATGATAAAATTAAAAGCTATAAAAAA
1 TATTTTATGATAAAATTAAAAGCTATAAAAAA
81519089 TATTTTATGATAAAATTAAAAGCTATAAAAA
1 TATTTTATGATAAAATTAAAAGCTATAAAAA
81519120 TATGTGTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (32 bp):
TATTTTATGATAAAATTAAAAGCTATAAAAAA
Found at i:81521459 original size:5 final size:5
Alignment explanation
Indices: 81521432--81521470 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
81521422 TTCAAGAAAT
81521432 TAATA TAATAA TAATA T-AT- TAATA TAATA TAATA TAATA
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA
81521471 ATAAAATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 1 0.03
4 4 0.13
5 21 0.68
6 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:81521488 original size:20 final size:20
Alignment explanation
Indices: 81521463--81521501 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81521453 ATATAATATA
*
81521463 ATATAATAATAAAATAAAGC
1 ATATAATAATAAAAGAAAGC
81521483 ATATAATAATAAAAGAAAG
1 ATATAATAATAAAAGAAAG
81521502 AAAAGAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.23
Consensus pattern (20 bp):
ATATAATAATAAAAGAAAGC
Found at i:81529035 original size:8 final size:8
Alignment explanation
Indices: 81529024--81529068 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
81529014 TTTAAGAAAT
81529024 TAATATAA
1 TAATATAA
*
81529032 TAATATAT
1 TAATATAA
81529040 TAATATAATA
1 TAATAT-A-A
81529050 TAATATAA
1 TAATATAA
*
81529058 TAATAAAA
1 TAATATAA
81529066 TAA
1 TAA
81529069 AGCGTTGATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 24 0.75
9 2 0.06
10 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATATAA
Found at i:81529043 original size:16 final size:16
Alignment explanation
Indices: 81529022--81529068 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
81529012 TATTTAAGAA
81529022 ATTAATATAATAATAT
1 ATTAATATAATAATAT
81529038 ATTAATATAATATAATAT
1 ATTAATAT-A-ATAATAT
* *
81529056 AATAATAAAATAA
1 ATTAATATAATAA
81529069 AGCGTTGATC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 12 0.44
17 2 0.07
18 13 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTAATATAATAATAT
Found at i:81529060 original size:13 final size:13
Alignment explanation
Indices: 81529024--81529067 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
81529014 TTTAAGAAAT
81529024 TAATATAATAATA
1 TAATATAATAATA
*
81529037 TATTA-ATATAATA
1 TAATATA-ATAATA
81529050 TAATATAATAATA
1 TAATATAATAATA
*
81529063 AAATA
1 TAATA
81529068 AAGCGTTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 1 0.04
13 24 0.92
14 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATAATAATA
Found at i:81540221 original size:32 final size:32
Alignment explanation
Indices: 81540179--81540267 Score: 124
Period size: 32 Copynumber: 2.8 Consensus size: 32
81540169 AATCTCTGTG
*
81540179 CATACATGTACCATATTGTACCAATTTCCGTA
1 CATACCTGTACCATATTGTACCAATTTCCGTA
*
81540211 CATACCTGTACCATATTATACCAATTTCCGTA
1 CATACCTGTACCATATTGTACCAATTTCCGTA
* * * *
81540243 GATACCTGTATCATCTCGTACCAAT
1 CATACCTGTACCATATTGTACCAAT
81540268 CTCATACTCA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (32 bp):
CATACCTGTACCATATTGTACCAATTTCCGTA
Found at i:81540433 original size:28 final size:28
Alignment explanation
Indices: 81540360--81540444 Score: 95
Period size: 28 Copynumber: 3.0 Consensus size: 28
81540350 CTAAGTGTTG
*
81540360 TTCTGGATGTTTCGCACACTAAGTGCC-
1 TTCTGGATGTATCGCACACTAAGTGCCA
* *
81540387 TTCCTCG-T-TACTGCTCACACTAAGTGCCA
1 TT-CTGGATGTA-T-CGCACACTAAGTGCCA
81540416 TTCTGGATGTATCGCACACTAAGTGCCA
1 TTCTGGATGTATCGCACACTAAGTGCCA
81540444 T
1 T
81540445 CCCCGATACT
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 1 0.02
27 4 0.09
28 36 0.77
29 4 0.09
30 2 0.04
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (28 bp):
TTCTGGATGTATCGCACACTAAGTGCCA
Found at i:81543075 original size:91 final size:91
Alignment explanation
Indices: 81542908--81543099 Score: 214
Period size: 91 Copynumber: 2.1 Consensus size: 91
81542898 GGCAATTTAT
*
81542908 CTGCAAACACTGGTGGTATATCCAGAAACTCACTGGCAACTTTTATCTGCAAACCCGTTATGCAT
1 CTGCAAACACTGGTGGTATATCCAGAAACTCACTGGCAACTTTTATCTACAAACCCGTTATGCAT
*
81542973 ACACAACCTACT-GACAGCGTATTAAC
66 ACACAACCTACTGGA-AACGTATTAAC
* * * * ** *
81542999 TTGCAAACACTGGTGGTTTATCCA-CAACTTCTATTGGCAACTTTTATCTACAAAATTC-TTGTG
1 CTGCAAACACTGGTGGTATATCCAGAAAC-TC-ACTGGCAACTTTTATCTAC-AAACCCGTTATG
* *
81543062 TATTCACAA-CTACTGGAAACGTATTAAC
63 CATACACAACCTACTGGAAACGTATTAAC
81543090 CTGC-AACACT
1 CTGCAAACACT
81543100 TATGGTTCAT
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
90 9 0.11
91 42 0.49
92 30 0.35
93 4 0.05
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (91 bp):
CTGCAAACACTGGTGGTATATCCAGAAACTCACTGGCAACTTTTATCTACAAACCCGTTATGCAT
ACACAACCTACTGGAAACGTATTAAC
Found at i:81544691 original size:18 final size:18
Alignment explanation
Indices: 81544668--81544703 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81544658 ATATATAAAA
81544668 AATTAATTAAAATCAATT
1 AATTAATTAAAATCAATT
*
81544686 AATTAATTAAAATTAATT
1 AATTAATTAAAATCAATT
81544704 TACAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTAATTAAAATCAATT
Found at i:81546308 original size:33 final size:33
Alignment explanation
Indices: 81546271--81546335 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
81546261 ATTCTAACAG
81546271 AATATTTAGCACATTTCTAGAGAATTCAATCAA
1 AATATTTAGCACATTTCTAGAGAATTCAATCAA
81546304 AATATTTAGCACATTTCTAGAGAATTCAATCA
1 AATATTTAGCACATTTCTAGAGAATTCAATCA
81546336 GAACGCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (33 bp):
AATATTTAGCACATTTCTAGAGAATTCAATCAA
Found at i:81547101 original size:18 final size:18
Alignment explanation
Indices: 81547078--81547116 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
81547068 TTTATTTTTA
*
81547078 TTATATTTTAAATAATTT
1 TTATATTTTAAATAAATT
*
81547096 TTATATTTTACATAAATT
1 TTATATTTTAAATAAATT
81547114 TTA
1 TTA
81547117 ATTGAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATATTTTAAATAAATT
Found at i:81548877 original size:24 final size:24
Alignment explanation
Indices: 81548840--81548899 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
81548830 TATCTCTAGA
* *
81548840 ATAATTAGAGTTTAACTAGGAAAGG
1 ATAA-TAGATTTTAACTAGGAAAAG
*
81548865 ATAATAGATTTTAACTGGGAAAAG
1 ATAATAGATTTTAACTAGGAAAAG
*
81548889 ATAACAGATTT
1 ATAATAGATTT
81548900 ATGTGGGAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAATAGATTTTAACTAGGAAAAG
Found at i:81549004 original size:23 final size:22
Alignment explanation
Indices: 81548974--81549016 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
81548964 ATGACATCTA
81548974 GAAACTCCTCATCATGACGTCG
1 GAAACTCCTCATCATGACGTCG
*
81548996 GAAACCTCCTCGTCATGACGT
1 GAAA-CTCCTCATCATGACGT
81549017 TGTAACCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.23
Consensus pattern (22 bp):
GAAACTCCTCATCATGACGTCG
Found at i:81559039 original size:14 final size:15
Alignment explanation
Indices: 81559012--81559040 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81559002 ATAGATGATT
81559012 TATTTAGAATTTTTA
1 TATTTAGAATTTTTA
81559027 TATTTAG-ATTTTTA
1 TATTTAGAATTTTTA
81559041 GTGATTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
TATTTAGAATTTTTA
Found at i:81562417 original size:34 final size:34
Alignment explanation
Indices: 81562342--81562417 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
81562332 GAACAATACG
* * * *
81562342 GTAGCAACCAATAAGTTTATAACAGTTCGATTCA
1 GTAGCAAACAATAAGCTTATAACAGATCAATTCA
* *
81562376 GTGGCAAACAATATGCTTATAACAGATCAACTTC-
1 GTAGCAAACAATAAGCTTATAACAGATCAA-TTCA
81562410 GTAGCAAA
1 GTAGCAAA
81562418 AGTCATGCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
34 31 0.91
35 3 0.09
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.26
Consensus pattern (34 bp):
GTAGCAAACAATAAGCTTATAACAGATCAATTCA
Done.