Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 241 of 362
Found at i:81566466 original size:22 final size:22
Alignment explanation
Indices: 81566441--81566483 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
81566431 TTCTTATAAC
81566441 AAATTATTAATATAATAAATAT
1 AAATTATTAATATAATAAATAT
* *
81566463 AAATTATTATTTTAATAAATA
1 AAATTATTAATATAATAAATA
81566484 ATTTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATTATTAATATAATAAATAT
Found at i:81566491 original size:34 final size:30
Alignment explanation
Indices: 81566448--81566516 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
81566438 AACAAATTAT
81566448 TAATATAATAAATATAAATTATTATTTTAATAAA
1 TAATATAAT--ATATAAATT-TTATTTTAA-AAA
* * *
81566482 TAATTTAATATTTCAATTTTATTTTAAAAA
1 TAATATAATATATAAATTTTATTTTAAAAA
81566512 TAATA
1 TAATA
81566517 ATTTTAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
30 7 0.23
31 9 0.29
32 7 0.23
34 8 0.26
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (30 bp):
TAATATAATATATAAATTTTATTTTAAAAA
Found at i:81566534 original size:30 final size:31
Alignment explanation
Indices: 81566462--81566534 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 31
81566452 ATAATAAATA
81566462 TAAATTATTATTTTAATAAATAATTTAATATT
1 TAAATTATTATTTTAATAAATAA-TTAATATT
*
81566494 TCAATT-TTATTTTAA-AAATAA-TAAT-TT
1 TAAATTATTATTTTAATAAATAATTAATATT
81566521 TAAATAATATTATT
1 TAAAT--TATTATT
81566535 CACATATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
27 6 0.17
28 4 0.11
29 1 0.03
30 11 0.31
31 9 0.25
32 5 0.14
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (31 bp):
TAAATTATTATTTTAATAAATAATTAATATT
Found at i:81566580 original size:15 final size:15
Alignment explanation
Indices: 81566551--81566616 Score: 53
Period size: 15 Copynumber: 4.2 Consensus size: 15
81566541 TTATTGAAAA
*
81566551 TTTAAT-ATTAATAT
1 TTTAATAATAAATAT
81566565 TTTAATAATAAATATT
1 TTTAATAATAAATA-T
*
81566581 TATTACAATTATAAATAT
1 T-TT--AATAATAAATAT
* *
81566599 ATTAATAATAAATGT
1 TTTAATAATAAATAT
81566614 TTT
1 TTT
81566617 GTAGTATAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 6 0.15
15 18 0.44
16 2 0.05
17 4 0.10
18 1 0.02
19 10 0.24
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (15 bp):
TTTAATAATAAATAT
Found at i:81567113 original size:13 final size:14
Alignment explanation
Indices: 81567075--81567112 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
81567065 CCAGAAAAGT
81567075 AAATCATTTTTCGA
1 AAATCATTTTTCGA
81567089 AAATCATTTTTCGA
1 AAATCATTTTTCGA
*
81567103 AAGTCATTTT
1 AAATCATTTT
81567113 CAGTGAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (14 bp):
AAATCATTTTTCGA
Found at i:81567849 original size:29 final size:29
Alignment explanation
Indices: 81567813--81568035 Score: 153
Period size: 29 Copynumber: 8.0 Consensus size: 29
81567803 CCACAAAACA
* * *
81567813 TTCATTTAGTTGAGTTAGCCACAAAGGCT
1 TTCATTTAATAGAGATAGCCACAAAGGCT
81567842 TTCATTTAATAGAGATCA-CCACAAAGG-T
1 TTCATTTAATAGAGAT-AGCCACAAAGGCT
* * * *
81567870 TTCCTTTAATAAAGATAGCCACAAAGACA
1 TTCATTTAATAGAGATAGCCACAAAGGCT
*
81567899 TCCA-TT--TAGAGATAGCCACAAAGGC-
1 TTCATTTAATAGAGATAGCCACAAAGGCT
* * * *
81567924 TTCCTTTAATAGAAACATCCACAAAGGCT
1 TTCATTTAATAGAGATAGCCACAAAGGCT
* * * * * *
81567953 TTTATTTAACAGAGGTTGCTACAAATG-T
1 TTCATTTAATAGAGATAGCCACAAAGGCT
* * *
81567981 GTCTTTATAATAGAGATTGCCACAAAGGCT
1 TTCATT-TAATAGAGATAGCCACAAAGGCT
81568011 TT--TTT--TCAGAGATAGCCACAAAGGC
1 TTCATTTAAT-AGAGATAGCCACAAAGGC
81568036 GTCCATTCAG
Statistics
Matches: 149, Mismatches: 35, Indels: 23
0.72 0.17 0.11
Matches are distributed among these distances:
25 3 0.02
26 36 0.24
27 2 0.01
28 47 0.32
29 58 0.39
30 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (29 bp):
TTCATTTAATAGAGATAGCCACAAAGGCT
Found at i:81567878 original size:28 final size:28
Alignment explanation
Indices: 81567828--81568062 Score: 146
Period size: 26 Copynumber: 8.5 Consensus size: 28
81567818 TTAGTTGAGT
*
81567828 TAGCCACAAAGGCTTTCATTTAATAGAGA
1 TAGCCACAAAGGC-TTCCTTTAATAGAGA
* *
81567857 TCA-CCACAAAGGTTTCCTTTAATAAAGA
1 T-AGCCACAAAGGCTTCCTTTAATAGAGA
* * *
81567885 TAGCCACAAAGACATCCATT--TAGAGA
1 TAGCCACAAAGGCTTCCTTTAATAGAGA
*
81567911 TAGCCACAAAGGCTTCCTTTAATAGAAA
1 TAGCCACAAAGGCTTCCTTTAATAGAGA
* * ** * *
81567939 CATCCACAAAGGCTTTTATTTAACAGAGG
1 TAGCCACAAAGGC-TTCCTTTAATAGAGA
* * * *
81567968 TTGCTACAAATG-TGTCTTTATAATAGAGA
1 TAGCCACAAAGGCT-TCCTT-TAATAGAGA
* *
81567997 TTGCCACAAAGGCTT--TTT-TTCAGAGA
1 TAGCCACAAAGGCTTCCTTTAAT-AGAGA
* * *
81568023 TAGCCACAAAGGCGTCCATT--CAGAGA
1 TAGCCACAAAGGCTTCCTTTAATAGAGA
*
81568049 TATCCACAAAGGCT
1 TAGCCACAAAGGCT
81568063 CACTTATACA
Statistics
Matches: 158, Mismatches: 37, Indels: 25
0.72 0.17 0.11
Matches are distributed among these distances:
25 1 0.01
26 58 0.37
27 4 0.03
28 48 0.30
29 45 0.28
30 2 0.01
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (28 bp):
TAGCCACAAAGGCTTCCTTTAATAGAGA
Found at i:81573507 original size:13 final size:13
Alignment explanation
Indices: 81573489--81573513 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81573479 CTGAGTCATA
81573489 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
81573502 ATTTTAGTAAAA
1 ATTTTAGTAAAA
81573514 CCTTTCTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:81577729 original size:5 final size:6
Alignment explanation
Indices: 81577712--81577739 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
81577702 TTATTGATAT
81577712 ATAAAA ATAAAA ATAAAA ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAA
81577740 TTTAGTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:81586622 original size:15 final size:15
Alignment explanation
Indices: 81586602--81586638 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
81586592 CTTTGTGGTG
81586602 AACCTTTATACATAA
1 AACCTTTATACATAA
81586617 AACCTTTATACATAA
1 AACCTTTATACATAA
81586632 AACCTTT
1 AACCTTT
81586639 TTGGTGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (15 bp):
AACCTTTATACATAA
Found at i:81586704 original size:28 final size:28
Alignment explanation
Indices: 81586666--81586945 Score: 116
Period size: 28 Copynumber: 10.1 Consensus size: 28
81586656 AAAGATTTTA
* * * *
81586666 TGGCGAGCCTCTGAAAGGAAATCCTTTT
1 TGGCGAACCTCTTAAAGGAAAGCCTTTG
*
81586694 TGGCGAACCTCTCTATA-GAAAGCCTTTG
1 TGGCGAACCTCT-TAAAGGAAAGCCTTTG
*
81586722 TGGCAAACCTCTTAAAGGAAAGCCTTTG
1 TGGCGAACCTCTTAAAGGAAAGCCTTTG
* * * *
81586750 TGGCGAACCACTATCTAA--ATAGCCTTTT
1 TGGCGAACCTCT-T-AAAGGAAAGCCTTTG
* * *
81586778 TGGCAAACCTTTATAAAGGAAAAGCCTTTA
1 TGGCGAACCTCT-TAAAGG-AAAGCCTTTG
* * *
81586808 TGGCAAACCTCTCTATAA--AAATCATTTG
1 TGGCGAACCTCT-TA-AAGGAAAGCCTTTG
* * * * *
81586836 TGGTGTA--TCTAAAAGAAAAGTCTTTG
1 TGGCGAACCTCTTAAAGGAAAGCCTTTG
** *
81586862 TGGAAAACCTCTGTACA-GAAAGCCTTTG
1 TGGCGAACCTCT-TAAAGGAAAGCCTTTG
* * *
81586890 TCGC-ATA--TCTAAAAGAAAAGCCTTTG
1 TGGCGA-ACCTCTTAAAGGAAAGCCTTTG
* * *
81586916 T-TCTGAGCCTCTAAAAGGAAAGCCTTTG
1 TGGC-GAACCTCTTAAAGGAAAGCCTTTG
81586944 TG
1 TG
81586946 ACAAACCTTT
Statistics
Matches: 187, Mismatches: 45, Indels: 39
0.69 0.17 0.14
Matches are distributed among these distances:
24 2 0.01
25 4 0.02
26 28 0.15
27 7 0.04
28 116 0.62
29 5 0.03
30 23 0.12
31 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (28 bp):
TGGCGAACCTCTTAAAGGAAAGCCTTTG
Found at i:81586739 original size:56 final size:55
Alignment explanation
Indices: 81586673--81586827 Score: 184
Period size: 56 Copynumber: 2.7 Consensus size: 55
81586663 TTATGGCGAG
* * *
81586673 CCTCTGAAAGGAAATCCTTTTTGGCGAACCTCTCTATAGAAAGCCTTTGTGGCAAA
1 CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATA-AAAGCCTTTGTGGCAAA
* * * * *
81586729 CCTCTTAAAGGAAAGCCTTTGTGGCGAACCACTATCTAAATAGCCTTTTTGGCAAA
1 CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATAAA-AGCCTTTGTGGCAAA
* *
81586785 CCTTTATAAAGGAAAAGCCTTTATGGCAAACCTCTCTATAAAA
1 CCTCT-TAAAGG-AAAGCCTTTATGGCGAACCTCTCTATAAAA
81586828 ATCATTTGTG
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
55 2 0.02
56 50 0.60
57 7 0.08
58 24 0.29
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (55 bp):
CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATAAAAGCCTTTGTGGCAAA
Found at i:81586890 original size:54 final size:54
Alignment explanation
Indices: 81586791--81586916 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
81586781 CAAACCTTTA
* * * * * * **
81586791 TAAAGGAAAAGCCTTTATGGCAAACCTCTCTATAAAAATCATTTGTGGTGTATC
1 TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTCGCATATC
* * * *
81586845 TAAAAGAAAAGTCTTTGTGGAAAACCTCTGTACAGAAAGCCTTTGTCGCATATC
1 TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTCGCATATC
81586899 TAAAAGAAAAGCCTTTGT
1 TAAAAGAAAAGCCTTTGT
81586917 TCTGAGCCTC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (54 bp):
TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTCGCATATC
Found at i:81586927 original size:54 final size:54
Alignment explanation
Indices: 81586841--81586944 Score: 120
Period size: 54 Copynumber: 1.9 Consensus size: 54
81586831 ATTTGTGGTG
* * * *
81586841 TATCTAAAAGAAAAGTCTTTGTGGAAAACCTCTGTACA-GAAAGCCTTTGTCGCA
1 TATCTAAAAGAAAAGCCTTTGTGCAAAACCTCT-AAAAGGAAAGCCTTTGTCGCA
* ** *
81586895 TATCTAAAAGAAAAGCCTTTGTTCTGAGCCTCTAAAAGGAAAGCCTTTGT
1 TATCTAAAAGAAAAGCCTTTGTGCAAAACCTCTAAAAGGAAAGCCTTTGT
81586945 GACAAACCTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
53 2 0.05
54 39 0.95
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (54 bp):
TATCTAAAAGAAAAGCCTTTGTGCAAAACCTCTAAAAGGAAAGCCTTTGTCGCA
Found at i:81586943 original size:82 final size:82
Alignment explanation
Indices: 81586843--81586998 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 82
81586833 TTGTGGTGTA
* * * *
81586843 TCTAAAAGAAAAGTCTTTGTGGA-AAACCTCTGTACAGAAAGCCTTT-GTCGCATATCTAAAAGA
1 TCTAAAAGAAAAGCCTTTGT-GACAAACCTCTGTACAGAAAGCATTTACT-GCATATATAAAAGA
81586906 AAAGCCTTTGTTCTGAGCC
64 AAAGCCTTTGTTCTGAGCC
* * *
81586925 TCTAAAAGGAAAGCCTTTGTGACAAACCTTTGTACAGAAAGCATTTACTGCGTATATAAAAGAAA
1 TCTAAAAGAAAAGCCTTTGTGACAAACCTCTGTACAGAAAGCATTTACTGCATATATAAAAGAAA
81586990 AGCCTTTGT
66 AGCCTTTGT
81586999 GGCAATCCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 2 0.03
82 62 0.95
83 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (82 bp):
TCTAAAAGAAAAGCCTTTGTGACAAACCTCTGTACAGAAAGCATTTACTGCATATATAAAAGAAA
AGCCTTTGTTCTGAGCC
Found at i:81590413 original size:16 final size:17
Alignment explanation
Indices: 81590392--81590432 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
81590382 GTATGTATTA
81590392 TATATATTTTATA-CAT
1 TATATATTTTATATCAT
* *
81590408 TATATA-TATATATTAT
1 TATATATTTTATATCAT
81590424 TATATATTT
1 TATATATTT
81590433 ATGTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 5 0.25
16 14 0.70
17 1 0.05
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
TATATATTTTATATCAT
Found at i:81590418 original size:22 final size:21
Alignment explanation
Indices: 81590390--81590445 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
81590380 GTGTATGTAT
81590390 TATATATATTTTATACATTATA
1 TATATATATTTTATACATT-TA
*
81590412 TATATATATTATTATATATTTA
1 TATATATATT-TTATACATTTA
*
81590434 TGTATATATTTT
1 TATATATATTTT
81590446 TAATATCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 2 0.06
22 21 0.68
23 8 0.26
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TATATATATTTTATACATTTA
Found at i:81590427 original size:14 final size:14
Alignment explanation
Indices: 81590387--81590467 Score: 53
Period size: 14 Copynumber: 5.7 Consensus size: 14
81590377 AATGTGTATG
*
81590387 TATTATATATATTT
1 TATTATATATATAT
*
81590401 TATACATTATATATAT
1 TAT-TA-TATATATAT
81590417 ATATTAT-TATATA-
1 -TATTATATATATAT
*
81590430 T-TTATGTATATAT
1 TATTATATATATAT
*
81590443 TTTTA-ATATCATAT
1 TATTATATAT-ATAT
81590457 TATTCATATAT
1 TATT-ATATAT
81590468 TTTTTATATT
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
11 4 0.08
12 7 0.13
13 4 0.08
14 19 0.36
15 3 0.06
16 13 0.25
17 3 0.06
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (14 bp):
TATTATATATATAT
Found at i:81590482 original size:45 final size:46
Alignment explanation
Indices: 81590403--81590516 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 46
81590393 ATATATTTTA
* * *
81590403 TACATTATATATATATATTATTATATATTTATGTATATATTTTTAATA-
1 TACATTATGTATATAT-TT-TT-TATATTTATGTAAATATTTTCAATAC
*
81590451 TCATATTAT-TCATATATTTTTTATA-TTATGTAAATATTTTCAATAC
1 T-ACATTATGT-ATATATTTTTTATATTTATGTAAATATTTTCAATAC
81590497 TACATTATGTATATATTTTT
1 TACATTATGTATATATTTTT
81590517 GTCTATATTG
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
45 34 0.59
46 6 0.10
47 2 0.03
48 4 0.07
49 12 0.21
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (46 bp):
TACATTATGTATATATTTTTTATATTTATGTAAATATTTTCAATAC
Found at i:81590793 original size:26 final size:26
Alignment explanation
Indices: 81590763--81590814 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81590753 ATTATGTATA
*
81590763 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
81590789 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
81590815 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:81600239 original size:34 final size:34
Alignment explanation
Indices: 81600196--81600261 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
81600186 TCTTCGCCAG
81600196 TAGGCCTCTAGAAGATTATGAGCCATTGAACTCT
1 TAGGCCTCTAGAAGATTATGAGCCATTGAACTCT
81600230 TAGGCCTCTAGAAGATTATGAGCCATTGAACT
1 TAGGCCTCTAGAAGATTATGAGCCATTGAACT
81600262 TTGATTTTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (34 bp):
TAGGCCTCTAGAAGATTATGAGCCATTGAACTCT
Found at i:81603305 original size:205 final size:205
Alignment explanation
Indices: 81603029--81603446 Score: 603
Period size: 205 Copynumber: 2.0 Consensus size: 205
81603019 CGGGGAGCAG
* * * * *
81603029 ATCGAAGATATAGCTGATTTGGCTTTCACGTATTTACGATGAAGCAAATTCAAGATGATTTGTCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACGATCAAACAAATTCAAGATGATTTGGCA
* * *
81603094 TCTCTGTAGT-GTTAGAGAACAAATCGAAGTCTGGCATCTCTACTTCAATAGAGAGCAGATACAT
66 TCTCTGTA-TAGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACACAT
* * *
81603158 AGCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCT
130 AGCAGATC-CAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCT
81603222 TACAAGGAACAA
194 TACAAGGAACAA
*
81603234 ATTGAAGACATAGCTGATTTGGCTTTCACGT-TCTTAC-ATTCAAACAAA-TCTAAGATGATTTG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTAT-TTACGA-TCAAACAAATTC-AAGATGATTTG
* * * *
81603296 GCATCTCTGTATAGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGATGGAGGGTAGACAC
63 GCATCTCTGTATAGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACAC
81603361 ATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGC
128 ATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGC
*
81603426 TTACAAGGAGCAA
193 TTACAAGGAACAA
81603439 ATCGAAGA
1 ATCGAAGA
81603447 TGTTGTAACA
Statistics
Matches: 190, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
204 6 0.03
205 184 0.97
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTATTTACGATCAAACAAATTCAAGATGATTTGGCA
TCTCTGTATAGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAGACACATA
GCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTAGCATCCTTGTGCTTA
CAAGGAACAA
Found at i:81604835 original size:104 final size:105
Alignment explanation
Indices: 81604655--81605014 Score: 645
Period size: 104 Copynumber: 3.4 Consensus size: 105
81604645 TAACCGTTAT
* **
81604655 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81604720 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
81604759 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
81604823 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
81604864 TGGTGGATCACGCAC-TAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81604928 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
81604968 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCAC
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCAC
81605015 ACATCAACCC
Statistics
Matches: 247, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
104 184 0.74
105 62 0.25
106 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:81605386 original size:29 final size:29
Alignment explanation
Indices: 81605353--81605416 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
81605343 TAATCCACCA
81605353 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
81605382 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
81605412 CCCAA
1 CCCAA
81605417 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:81605390 original size:30 final size:30
Alignment explanation
Indices: 81605360--81605416 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81605350 CCACCCAACT
81605360 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
81605389 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
81605417 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:81612528 original size:104 final size:105
Alignment explanation
Indices: 81612240--81612607 Score: 633
Period size: 104 Copynumber: 3.6 Consensus size: 105
81612230 TAACCGTTAT
* *
81612240 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81612305 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
81612344 TGGTGGAT-ATCGCACTTAGCACCACC----AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
81612404 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
81612445 TGGTGGATCACGCAC-TAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
81612509 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
81612549 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
81612608 TTATATACAA
Statistics
Matches: 253, Mismatches: 3, Indels: 15
0.93 0.01 0.06
Matches are distributed among these distances:
100 66 0.26
101 31 0.12
102 1 0.00
104 114 0.45
105 41 0.16
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:81612968 original size:29 final size:29
Alignment explanation
Indices: 81612935--81612998 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
81612925 TAATCCACCA
81612935 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
81612964 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
81612994 CCCAA
1 CCCAA
81612999 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:81612972 original size:30 final size:30
Alignment explanation
Indices: 81612942--81612998 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81612932 CCACCCAACT
81612942 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
81612971 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
81612999 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:81620516 original size:102 final size:101
Alignment explanation
Indices: 81620398--81620581 Score: 307
Period size: 102 Copynumber: 1.8 Consensus size: 101
81620388 TAGCACATCA
*
81620398 AACCCCCTTTCACATTTCAAAGATATGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGAA
1 AACCCCCTTTCACATTTCAAAGATATGGTGGATCA-CGCACATAGCACCACC-ATGAACCGGGAA
**
81620462 TCAGCACTTAGCAACCCCTCGGGGAATCAGCACATAGC
64 TCAGCACACAGCAACCCCTCGGGGAATCAGCACATAGC
*
81620500 AACCCCCTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCACCACCATGAATCGGGAATC
1 AACCCCCTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCACCACCATGAACCGGGAATC
81620565 AGCACACAGCAACCCCT
66 AGCACACAGCAACCCCT
81620582 TTTATATACA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 28 0.36
102 48 0.62
103 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.19
Consensus pattern (101 bp):
AACCCCCTTTCACATTTCAAAGATATGGTGGATCACGCACATAGCACCACCATGAACCGGGAATC
AGCACACAGCAACCCCTCGGGGAATCAGCACATAGC
Found at i:81620931 original size:29 final size:29
Alignment explanation
Indices: 81620898--81620961 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
81620888 TAATCCACCA
81620898 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
81620927 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
81620957 CCCAA
1 CCCAA
81620962 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:81620935 original size:30 final size:30
Alignment explanation
Indices: 81620905--81620961 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81620895 CCACCCAACT
81620905 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
81620934 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
81620962 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:81627846 original size:26 final size:26
Alignment explanation
Indices: 81627816--81627867 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
81627806 CACCGCTGAA
*
81627816 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
81627842 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
81627868 CTTTTTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:81627983 original size:95 final size:94
Alignment explanation
Indices: 81627793--81628086 Score: 399
Period size: 95 Copynumber: 3.0 Consensus size: 94
81627783 TTGGTGGATC
** *
81627793 TCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGAATCAGCACA
1 TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGAATCAGCACA
** * ****
81627858 TAGCAACCCCCTTTTTTCATATGGTGGATA
66 TAGCAACCCCC-TTTCACATTTCAAAGATA
81627888 TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCAC
1 TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGGGAATCAGCAC
81627953 ATAGCAACCCCCTTTCACATTTCAAAGATATGGTGGATA
65 ATAGCAACCCCCTTTCACATTTC--A-A-A-----GATA
81627992 TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGAATCAGCACA
1 TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGAATCAGCACA
81628057 TAGCAACCCCCTTTCACATTTCAAAGATA
66 TAGCAACCCCCTTTCACATTTCAAAGATA
81628086 T
1 T
81628087 GGTGGATCAC
Statistics
Matches: 179, Mismatches: 10, Indels: 21
0.85 0.05 0.10
Matches are distributed among these distances:
94 5 0.03
95 55 0.31
96 25 0.14
99 1 0.01
100 1 0.01
101 1 0.01
103 36 0.20
104 55 0.31
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (94 bp):
TCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGAATCAGCACA
TAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:81628046 original size:26 final size:26
Alignment explanation
Indices: 81628016--81628066 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
81628006 ACCAATGAAC
*
81628016 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
81628042 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
81628067 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:81628112 original size:103 final size:104
Alignment explanation
Indices: 81627876--81628144 Score: 479
Period size: 103 Copynumber: 2.6 Consensus size: 104
81627866 CCCTTTTTTC
81627876 ATATGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGG
1 ATATGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGG
81627941 GGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAG
66 GGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAG
81627980 ATATGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-G
1 ATATGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGG
81628044 GGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAG
66 GGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAG
* * **
81628083 ATATGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 ATATGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
81628145 TTATATACAA
Statistics
Matches: 160, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
103 96 0.60
104 64 0.40
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (104 bp):
ATATGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGG
GGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAG
Found at i:81628504 original size:29 final size:29
Alignment explanation
Indices: 81628471--81628534 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
81628461 TAATCCACCA
81628471 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
81628500 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
81628530 CCCAA
1 CCCAA
81628535 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:81628508 original size:30 final size:30
Alignment explanation
Indices: 81628478--81628534 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81628468 CCACCCAACT
81628478 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
81628507 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
81628535 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:81629584 original size:45 final size:45
Alignment explanation
Indices: 81629531--81629616 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
81629521 GAAGAAGCAA
*
81629531 ATTTGGCGTCTCTGTATTAGACGGGGAGAAGATCGAAGATAACAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGAAGATCAAAGATAACAG
*
81629576 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
1 ATTTGGCGTCTCTGTATTAGACGGGGAGAAGATCAAAGATA
81629617 GTAGATATCG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (45 bp):
ATTTGGCGTCTCTGTATTAGACGGGGAGAAGATCAAAGATAACAG
Found at i:81631161 original size:28 final size:28
Alignment explanation
Indices: 81631119--81631486 Score: 104
Period size: 28 Copynumber: 13.3 Consensus size: 28
81631109 AAAAAAAATA
*
81631119 CCTTTGTGGCAAACCTCTGAAAAGAAAG
1 CCTTTGTGGCGAACCTCTGAAAAGAAAG
* * * * *
81631147 CCTTTGTGGTGAACCT-TTATACATAAAA
1 CCTTTGTGGCGAACCTCTGA-AAAGAAAG
* * * * *
81631175 CCTTTTTGGTGTA--TCT-CAACGAAAAG
1 CCTTTGTGGCGAACCTCTGAAAAG-AAAG
** * * * *
81631201 ATTTTATGGCGAGCCTCTGAAAGGAAAT
1 CCTTTGTGGCGAACCTCTGAAAAGAAAG
* ** *
81631229 CCTTTTTGGCGAACCTCTCTATAGAAAG
1 CCTTTGTGGCGAACCTCTGAAAAGAAAG
* * *
81631257 CCTTTGTGGCAAACCTCTTAAAGGAAAG
1 CCTTTGTGGCGAACCTCTGAAAAGAAAG
* * *
81631285 CCTTTGTGGCGAACCACT-ATCTAA-ATAG
1 CCTTTGTGGCGAACCTCTGA--AAAGAAAG
* *
81631313 CCTTTGTGGCAAACCT-TTATAAAGGAAAAG
1 CCTTTGTGGCGAACCTCTGA-AAA-G-AAAG
* * * * *
81631343 CCTTTATGGCAAACCTCTCTATAA-AAAT
1 CCTTTGTGGCGAACCTCT-GAAAAGAAAG
* *
81631371 CATTTGTGGCGTA--TCT-AAAAGAAAAG
1 CCTTTGTGGCGAACCTCTGAAAAG-AAAG
* ** * *
81631397 TCTTTGTGGAAAACCTCTGTACAGAAAG
1 CCTTTGTGGCGAACCTCTGAAAAGAAAG
*
81631425 CCTTTGTAGC-ATA--TCT-AAAAGAAAAG
1 CCTTTGTGGCGA-ACCTCTGAAAAG-AAAG
* *
81631451 CCTTTGT-TCTGAGCCTCT-AAAAGGAAAG
1 CCTTTGTGGC-GAACCTCTGAAAA-GAAAG
81631479 CCTTTGTG
1 CCTTTGTG
81631487 ACAAACCTTT
Statistics
Matches: 243, Mismatches: 70, Indels: 53
0.66 0.19 0.14
Matches are distributed among these distances:
24 3 0.01
25 5 0.02
26 39 0.16
27 9 0.04
28 156 0.64
29 8 0.03
30 18 0.07
31 3 0.01
32 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (28 bp):
CCTTTGTGGCGAACCTCTGAAAAGAAAG
Found at i:81631280 original size:56 final size:55
Alignment explanation
Indices: 81631214--81631368 Score: 193
Period size: 56 Copynumber: 2.7 Consensus size: 55
81631204 TTATGGCGAG
* * *
81631214 CCTCTGAAAGGAAATCCTTTTTGGCGAACCTCTCTATAGAAAGCCTTTGTGGCAAA
1 CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATA-AAAGCCTTTGTGGCAAA
* * * *
81631270 CCTCTTAAAGGAAAGCCTTTGTGGCGAACCACTATCTAAATAGCCTTTGTGGCAAA
1 CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATAAA-AGCCTTTGTGGCAAA
* *
81631326 CCTTTATAAAGGAAAAGCCTTTATGGCAAACCTCTCTATAAAA
1 CCTCT-TAAAGG-AAAGCCTTTATGGCGAACCTCTCTATAAAA
81631369 ATCATTTGTG
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
55 2 0.02
56 51 0.61
57 7 0.08
58 24 0.29
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (55 bp):
CCTCTTAAAGGAAAGCCTTTATGGCGAACCTCTCTATAAAAGCCTTTGTGGCAAA
Found at i:81631411 original size:54 final size:54
Alignment explanation
Indices: 81631332--81631457 Score: 153
Period size: 54 Copynumber: 2.3 Consensus size: 54
81631322 CAAACCTTTA
* * * * * * *
81631332 TAAAGGAAAAGCCTTTATGGCAAACCTCTCTATAAAAATCATTTGTGGCGTATC
1 TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTAGCATATC
* * * *
81631386 TAAAAGAAAAGTCTTTGTGGAAAACCTCTGTACAGAAAGCCTTTGTAGCATATC
1 TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTAGCATATC
81631440 TAAAAGAAAAGCCTTTGT
1 TAAAAGAAAAGCCTTTGT
81631458 TCTGAGCCTC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (54 bp):
TAAAAGAAAAGCCTTTGTGGAAAACCTCTCTACAAAAAGCATTTGTAGCATATC
Found at i:81631468 original size:54 final size:54
Alignment explanation
Indices: 81631373--81631485 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 54
81631363 ATAAAAATCA
* * * * * *
81631373 TTTGTGGCGTATCTAAAAGAAAAGTCTTTGTGGAAAACCTCTGTACA-GAAAGCC
1 TTTGTAGCATATCTAAAAGAAAAGCCTTTGTGCAAAACCTCT-AAAAGGAAAGCC
* ** *
81631427 TTTGTAGCATATCTAAAAGAAAAGCCTTTGTTCTGAGCCTCTAAAAGGAAAGCC
1 TTTGTAGCATATCTAAAAGAAAAGCCTTTGTGCAAAACCTCTAAAAGGAAAGCC
81631481 TTTGT
1 TTTGT
81631486 GACAAACCTT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
53 2 0.04
54 46 0.96
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (54 bp):
TTTGTAGCATATCTAAAAGAAAAGCCTTTGTGCAAAACCTCTAAAAGGAAAGCC
Found at i:81631470 original size:82 final size:82
Alignment explanation
Indices: 81631384--81631539 Score: 217
Period size: 82 Copynumber: 1.9 Consensus size: 82
81631374 TTGTGGCGTA
* * * *
81631384 TCTAAAAGAAAAGTCTTTGTGGA-AAACCTCTGTACAGAAAGCCTTT-GTAGCATATCTAAAAGA
1 TCTAAAAGAAAAGCCTTTGT-GACAAACCTCTGTACAGAAAGCATTTACT-GCATATATAAAAGA
81631447 AAAGCCTTTGTTCTGAGCC
64 AAAGCCTTTGTTCTGAGCC
* * *
81631466 TCTAAAAGGAAAGCCTTTGTGACAAACCTTTGTACAGAAAGCATTTACTGCGTATATAAAAGAAA
1 TCTAAAAGAAAAGCCTTTGTGACAAACCTCTGTACAGAAAGCATTTACTGCATATATAAAAGAAA
81631531 AGCCTTTGT
66 AGCCTTTGT
81631540 GGCAATCCTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 2 0.03
82 62 0.95
83 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (82 bp):
TCTAAAAGAAAAGCCTTTGTGACAAACCTCTGTACAGAAAGCATTTACTGCATATATAAAAGAAA
AGCCTTTGTTCTGAGCC
Found at i:81635011 original size:44 final size:45
Alignment explanation
Indices: 81634939--81635047 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 45
81634929 TATATATTTA
* *
81634939 TACATTA--TATATATTTATTATATTTTATGTATATATTTTTAATA-
1 TACATTATGTATATATTT-TTATA-TTTATGTAAATATTTTCAATAC
*
81634983 TCATATTAT-TCATATATTTTTATA-TTATGTAAATATTTTCAATAC
1 T-ACATTATGT-ATATATTTTTATATTTATGTAAATATTTTCAATAC
81635028 TACATTATGTATATATTTTT
1 TACATTATGTATATATTTTT
81635048 GTCTATATTG
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
44 35 0.62
45 7 0.12
46 6 0.11
47 8 0.14
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.57
Consensus pattern (45 bp):
TACATTATGTATATATTTTTATATTTATGTAAATATTTTCAATAC
Found at i:81635325 original size:26 final size:26
Alignment explanation
Indices: 81635295--81635346 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81635285 ATTATGTATA
*
81635295 TATTTTTAATACTACGTATACATTTT
1 TATTTCTAATACTACGTATACATTTT
* * *
81635321 TATTTCTATTATTACGTATATATTTT
1 TATTTCTAATACTACGTATACATTTT
81635347 AATACATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTCTAATACTACGTATACATTTT
Found at i:81637301 original size:25 final size:25
Alignment explanation
Indices: 81637273--81637341 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
81637263 CCTGTACATG
*
81637273 TATGCTCATACGAGCTGTGAATCAA
1 TATGCTCATACGAGCTGTAAATCAA
* * * *
81637298 TATGCTC-TCTCAAGCTGTAAATTAG
1 TATGCTCAT-ACGAGCTGTAAATCAA
*
81637323 TAAGCTCATACGAGCTGTA
1 TATGCTCATACGAGCTGTA
81637342 GGGCAGAACG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.30
Consensus pattern (25 bp):
TATGCTCATACGAGCTGTAAATCAA
Found at i:81641597 original size:26 final size:26
Alignment explanation
Indices: 81641536--81641588 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81641526 CCCTTGCATG
81641536 TAAGTGTTATTTTGTCCCGTTTTTAA
1 TAAGTGTTATTTTGTCCCGTTTTTAA
81641562 TAAGTGTTATTTTGTCCCGTTTTTAA
1 TAAGTGTTATTTTGTCCCGTTTTTAA
81641588 T
1 T
81641589 GATTTTTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.11, G:0.15, T:0.55
Consensus pattern (26 bp):
TAAGTGTTATTTTGTCCCGTTTTTAA
Found at i:81643936 original size:46 final size:44
Alignment explanation
Indices: 81643866--81643986 Score: 145
Period size: 46 Copynumber: 2.7 Consensus size: 44
81643856 AGGTTATTTG
* *
81643866 TGTGCCAGTCTAAGACATGTCTGGGACATGCATCAGCCT-TGAAA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAAA
* * *
81643910 TGTAAGCCAGTGTAAGACATGTCTGGGACATGTATCGGCTACGAGA
1 TGT--GCCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAAA
*
81643956 TGTGTCAGTGTAAGACCATGTCTGGGACATG
1 TGTGCCAGTGTAAGA-CATGTCTGGGACATG
81643987 GCATTGGCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
44 14 0.21
45 18 0.27
46 35 0.52
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAAA
Found at i:81645979 original size:22 final size:24
Alignment explanation
Indices: 81645949--81645993 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
81645939 TGACTTGAGG
*
81645949 ACACGGGCGTGT-A-CCTATTTCC
1 ACACAGGCGTGTGACCCTATTTCC
81645971 ACACAGGCGTGTGACCCTATTTC
1 ACACAGGCGTGTGACCCTATTTC
81645994 ATGGAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (24 bp):
ACACAGGCGTGTGACCCTATTTCC
Found at i:81650254 original size:46 final size:45
Alignment explanation
Indices: 81650061--81650330 Score: 196
Period size: 46 Copynumber: 5.8 Consensus size: 45
81650051 TAGGGTCATG
* * * **
81650061 TGCCGATGTCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGTACT--C-TCTCAA
*
81650111 TGCCGATACCATGTCCCAGACATGGTCTTACACT-GTCACATCTCGT-AA
1 TGCCGAT-GCATGTCCCAGACAT-GTCTTACACTAGT-AC-TCTC-TCAA
* * *
81650159 T--TGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCT-TGAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAG--TAC-TCTCTCAA
* *
81650204 -GCCGAAGCATGTCCCAAACATGTCTTACACTAGTACTCATCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGTACTC-TCTCAA
* *
81650249 TGCCGATGCCATGTCCCATACATGGTCTTACACTAG--CTCTCACAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGTACTCTCTCAA
81650294 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAG
81650331 CTCTCACAAG
Statistics
Matches: 184, Mismatches: 18, Indels: 40
0.76 0.07 0.17
Matches are distributed among these distances:
43 2 0.01
44 15 0.08
45 25 0.14
46 56 0.30
47 28 0.15
48 21 0.11
49 4 0.02
50 32 0.17
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGTACTCTCTCAA
Found at i:81650279 original size:94 final size:90
Alignment explanation
Indices: 81650064--81650330 Score: 240
Period size: 94 Copynumber: 2.9 Consensus size: 90
81650054 GGTCATGTGC
* * * *
81650064 CGATGTCATGTCCCAGACATGGTCTTACACAAGTTCT-AGCATATCTGTGCCGATACCATGTCCC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCA-CA-ATGTG-GCCGA-AGCATGTCCC
81650128 AGACATGGTCTTACACT-GTCACATCTCGTAAT
60 AGACAT-GTCTTACACTAGTCACATCTCG-AAT
* * * * *
81650160 TGATGCATGTCCCAGACATGTCTTACACTGGCT-T-AC-GTCTTGAAGCCGAAGCATGTCCCAAA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAAT-GTG--GCCGAAGCATGTCCCAGA
*
81650222 CATGTCTTACACTAGTACTCATCTC-AAT
63 CATGTCTTACACTAGT-CACATCTCGAAT
* *
81650250 GCCGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCACAATGTGGCCGATGCATGTCCCAG
1 --CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACAATGTGGCCGAAGCATGTCCCAG
81650315 ACATGTCTTACACTAG
62 ACATGTCTTACACTAG
81650331 CTCTCACAAG
Statistics
Matches: 143, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
90 14 0.10
91 18 0.13
92 17 0.12
93 15 0.10
94 55 0.38
95 15 0.10
96 8 0.06
97 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (90 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAATGTGGCCGAAGCATGTCCCAGACAT
GTCTTACACTAGTCACATCTCGAAT
Found at i:81655713 original size:18 final size:18
Alignment explanation
Indices: 81655692--81655728 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81655682 TCGAAACCGG
*
81655692 TCGGTTAATCGAAAAAAT
1 TCGGTTAACCGAAAAAAT
*
81655710 TCGGTTAACCTAAAAAAT
1 TCGGTTAACCGAAAAAAT
81655728 T
1 T
81655729 AATAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (18 bp):
TCGGTTAACCGAAAAAAT
Found at i:81655890 original size:5 final size:6
Alignment explanation
Indices: 81655877--81655924 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
81655867 ATAATTTAAT
*
81655877 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAGA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATA-A AAA
81655925 CATATAATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 28 0.76
7 4 0.11
8 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:81655924 original size:20 final size:19
Alignment explanation
Indices: 81655877--81655917 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
81655867 ATAATTTAAT
*
81655877 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAAT-AAA
*
81655897 AACTAAAAATAAAAATAAA
1 AAATAAAAATAAAAATAAA
81655916 AA
1 AA
81655918 TAGAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (19 bp):
AAATAAAAATAAAAATAAA
Found at i:81655980 original size:27 final size:27
Alignment explanation
Indices: 81655942--81656000 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
81655932 TTTATACAAA
* **
81655942 TAATTCGGTTAATTTGGATAATTCAGT
1 TAATTCGATTAATTCAGATAATTCAGT
*
81655969 TAATTCGATTAATTCAGTTAATTCAGT
1 TAATTCGATTAATTCAGATAATTCAGT
81655996 TAATT
1 TAATT
81656001 TTATACTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (27 bp):
TAATTCGATTAATTCAGATAATTCAGT
Found at i:81655993 original size:9 final size:9
Alignment explanation
Indices: 81655960--81656000 Score: 66
Period size: 9 Copynumber: 4.6 Consensus size: 9
81655950 TTAATTTGGA
81655960 TAATTCAGT
1 TAATTCAGT
81655969 TAATTC-GAT
1 TAATTCAG-T
81655978 TAATTCAGT
1 TAATTCAGT
81655987 TAATTCAGT
1 TAATTCAGT
81655996 TAATT
1 TAATT
81656001 TTATACTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.03
9 28 0.93
10 1 0.03
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (9 bp):
TAATTCAGT
Found at i:81656000 original size:18 final size:18
Alignment explanation
Indices: 81655942--81655992 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
81655932 TTTATACAAA
* *
81655942 TAATTCGGTTAATTTGGA-
1 TAATTCAGTTAA-TTCGAT
81655960 TAATTCAGTTAATTCGAT
1 TAATTCAGTTAATTCGAT
81655978 TAATTCAGTTAATTC
1 TAATTCAGTTAATTC
81655993 AGTTAATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.13
18 26 0.87
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (18 bp):
TAATTCAGTTAATTCGAT
Found at i:81656851 original size:27 final size:28
Alignment explanation
Indices: 81656827--81656887 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
81656817 TCCACCACGT
81656827 AGGCTT-CCATTTCATAAATTGCCACAA
1 AGGCTTCCCATTTCATAAATTGCCACAA
* * *
81656854 AGGTTTCCCATTTCGTAGATTGCCACAA
1 AGGCTTCCCATTTCATAAATTGCCACAA
81656882 AGGCTT
1 AGGCTT
81656888 TTTTTCCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (28 bp):
AGGCTTCCCATTTCATAAATTGCCACAA
Found at i:81657897 original size:96 final size:95
Alignment explanation
Indices: 81657734--81657914 Score: 308
Period size: 96 Copynumber: 1.9 Consensus size: 95
81657724 TTACTTTTCC
* * *
81657734 ATTTTCCTATTCATTCTTTAACAACTTAGCACTATAGAAGTTAACATGCAACCATAGTACTTACC
1 ATTTTCCTATTCATCCTTTAACAACTTAGCACTATAAAAGTTAACATGCAACCATAGCACTTACC
*
81657799 TAGGTTGTTAAATAACTTTTTTTTTAGATT
66 TAGGTTGTGAAATAACTTTTTTTTTAGATT
*
81657829 ATTTTCCTATTCATCCTTTTAACAACTTATCACTATAAAAGTTAACATGCAACCATAGCACTTAC
1 ATTTTCCTATTCATCC-TTTAACAACTTAGCACTATAAAAGTTAACATGCAACCATAGCACTTAC
81657894 CTAGGTTGTGAAATAACTTTT
65 CTAGGTTGTGAAATAACTTTT
81657915 GTTTAGAACT
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
95 15 0.19
96 65 0.81
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (95 bp):
ATTTTCCTATTCATCCTTTAACAACTTAGCACTATAAAAGTTAACATGCAACCATAGCACTTACC
TAGGTTGTGAAATAACTTTTTTTTTAGATT
Found at i:81666854 original size:18 final size:16
Alignment explanation
Indices: 81666821--81666860 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
81666811 TTCTATATAG
81666821 ATTTTACTTTTATTTT
1 ATTTTACTTTTATTTT
81666837 ATTTTACTATTGTATTTT
1 ATTTTACT-TT-TATTTT
81666855 ATTTTA
1 ATTTTA
81666861 ACAAGGATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.36
17 2 0.09
18 12 0.55
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (16 bp):
ATTTTACTTTTATTTT
Found at i:81667747 original size:30 final size:30
Alignment explanation
Indices: 81667712--81667769 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81667702 TAGGCATTTC
* * *
81667712 CACACGGGTAATCCACACGCCTGTGTGTGA
1 CACACGGGCAAACCACACGCCCGTGTGTGA
*
81667742 CACACGGGCAAACCACATGCCCGTGTGT
1 CACACGGGCAAACCACACGCCCGTGTGT
81667770 CATGGCCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (30 bp):
CACACGGGCAAACCACACGCCCGTGTGTGA
Found at i:81681389 original size:13 final size:13
Alignment explanation
Indices: 81681371--81681397 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81681361 AATTAAGGAT
81681371 TTACTAATTAATC
1 TTACTAATTAATC
81681384 TTACTAATTAATC
1 TTACTAATTAATC
81681397 T
1 T
81681398 GTCTTCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (13 bp):
TTACTAATTAATC
Found at i:81688846 original size:47 final size:47
Alignment explanation
Indices: 81688793--81689031 Score: 379
Period size: 47 Copynumber: 5.1 Consensus size: 47
81688783 TTAGGATTTT
*
81688793 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
81688840 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGCCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
81688887 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
* * *
81688934 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
** * * *
81688981 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
81689028 AATG
1 AATG
81689032 CGAAATGTGT
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 181 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:81689141 original size:46 final size:46
Alignment explanation
Indices: 81689005--81689141 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 46
81688995 GAACATGTAT
* * * *
81689005 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGTTAG
1 ATATGTAGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
81689051 ATATG-AGATAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTAG-TAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
81689097 ATATGTAGTAAAGCCAAATGGATAATGTGAGATATGTATGAGATG
1 ATATGTAGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
81689142 TGTATATATA
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
45 1 0.01
46 75 0.96
47 2 0.03
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTAGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:81695717 original size:46 final size:45
Alignment explanation
Indices: 81695572--81695744 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
81695562 CACTTGTGTG
* * *
81695572 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * * *
81695617 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGAC-A
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
*
81695664 AGTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA
1 A--GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
*
81695712 AGCTAGTGTAAGACATGTCTAGGACATGCATCG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCG
81695745 ACATGCATCG
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
46 57 0.53
47 28 0.26
48 22 0.20
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:81697484 original size:29 final size:29
Alignment explanation
Indices: 81697451--81697507 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
81697441 TATATGTTAG
*
81697451 TATGGAAGTGTTTTGTCGTGAAGTATTAA
1 TATGGAAGTGTTTTGTCATGAAGTATTAA
*
81697480 TATGGTAGTGTTTTGTCATGAAGTATTA
1 TATGGAAGTGTTTTGTCATGAAGTATTA
81697508 GGTGTCAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.26, T:0.44
Consensus pattern (29 bp):
TATGGAAGTGTTTTGTCATGAAGTATTAA
Found at i:81698457 original size:42 final size:42
Alignment explanation
Indices: 81698395--81698476 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
81698385 TTGTACTTTG
* *
81698395 GTTTATTCGATGATGCACTTATGTGACAATATATTTGCTTCT
1 GTTTATCCGATGATGCACTTACGTGACAATATATTTGCTTCT
* * * *
81698437 GTTTATCCGATTATGTACTTACGTGCCAGTATATTTGCTT
1 GTTTATCCGATGATGCACTTACGTGACAATATATTTGCTT
81698477 TGATACATCC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.45
Consensus pattern (42 bp):
GTTTATCCGATGATGCACTTACGTGACAATATATTTGCTTCT
Found at i:81698499 original size:42 final size:42
Alignment explanation
Indices: 81698407--81698508 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
81698397 TTATTCGATG
* ** * *
81698407 ATGCACTTATGTGACAATATATTTGCTTCTGTTTATCCGATT
1 ATGCACTTATGTGACAGTATATTTGCTTCTGTACATCCAATA
* * *
81698449 ATGTACTTACGTGCCAGTATATTTGCTT-TGATACATCCAATA
1 ATGCACTTATGTGACAGTATATTTGCTTCTG-TACATCCAATA
81698491 ATGCACTTATGTGACAGT
1 ATGCACTTATGTGACAGT
81698509 TGATTGCCTC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.04
42 46 0.96
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (42 bp):
ATGCACTTATGTGACAGTATATTTGCTTCTGTACATCCAATA
Found at i:81700991 original size:18 final size:19
Alignment explanation
Indices: 81700968--81701010 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
81700958 GTTTATTATC
81700968 ATGTACCATTT-TTTGTAA
1 ATGTACCATTTGTTTGTAA
*
81700986 ATGTACTATTTGTTTGTAA
1 ATGTACCATTTGTTTGTAA
*
81701005 AAGTAC
1 ATGTAC
81701011 GAGGGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (19 bp):
ATGTACCATTTGTTTGTAA
Found at i:81705486 original size:29 final size:29
Alignment explanation
Indices: 81705321--81705486 Score: 145
Period size: 29 Copynumber: 5.6 Consensus size: 29
81705311 GCAATAGAAA
* *
81705321 TCAGTCACAAAGGCTTCCACATATAACAAGTT
1 TCAGCCACAAAGGCTT--ACATATAAC-AGAT
* * * *
81705353 TCA-CCACTATGGCTTACATGTAACAGAGA
1 TCAGCCACAAAGGCTTACATATAACAGA-T
* *
81705382 ACAGCCACAAAGGCTTTCACATATAACAAAT
1 TCAGCCACAAAGGC-TT-ACATATAACAGAT
* * * * *
81705413 TTATCCAGAAAGGCTCACATATAATAGAT
1 TCAGCCACAAAGGCTTACATATAACAGAT
*
81705442 TCAGCCACAAAGGCTTACCTATAACAGAT
1 TCAGCCACAAAGGCTTACATATAACAGAT
81705471 TCAGCCACAAAGGCTT
1 TCAGCCACAAAGGCTT
81705487 CAATTTTAGG
Statistics
Matches: 105, Mismatches: 25, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
28 2 0.02
29 60 0.57
30 9 0.09
31 21 0.20
32 13 0.12
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.23
Consensus pattern (29 bp):
TCAGCCACAAAGGCTTACATATAACAGAT
Found at i:81705756 original size:21 final size:21
Alignment explanation
Indices: 81705731--81705773 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
81705721 CATTAAGGTC
81705731 TACATTAAGGTCGTATTAAAG
1 TACATTAAGGTCGTATTAAAG
81705752 TACATTAAGGTCGTATTAAAG
1 TACATTAAGGTCGTATTAAAG
81705773 T
1 T
81705774 TTCGTTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
TACATTAAGGTCGTATTAAAG
Found at i:81718542 original size:40 final size:40
Alignment explanation
Indices: 81718472--81718674 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
81718462 CGGATGATAA
* *
81718472 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
81718512 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-C
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
81718551 CGAAGGCATTTGTGCG-GTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
81718590 CGAAGGCATTGGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
81718630 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
81718669 CGAAGG
1 CGAAGG
81718675 TACTTGGTTT
Statistics
Matches: 151, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 21 0.14
39 49 0.32
40 80 0.53
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:81718590 original size:78 final size:79
Alignment explanation
Indices: 81718472--81718674 Score: 279
Period size: 78 Copynumber: 2.6 Consensus size: 79
81718462 CGGATGATAA
* * * *
81718472 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CGAAGGCATTTGTGC-GGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTA
81718536 TATCCGGGCTAAGT-C
64 TATCCGGGCTAAGTCC
81718551 CGAAGGCATTTGTGCGGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATA
1 CGAAGGCATTTGTGCGGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATA
81718616 TCCGGGCTAAGTCC
66 TCCGGGCTAAGTCC
* * *
81718630 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CGAAGGCATTTGTGCG-GTTA-CTATATCCGGGCTAAGTCCCGAAGG
81718675 TACTTGGTTT
Statistics
Matches: 113, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
78 56 0.50
79 48 0.42
80 9 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATA
TCCGGGCTAAGTCC
Found at i:81726846 original size:40 final size:40
Alignment explanation
Indices: 81726776--81726939 Score: 228
Period size: 40 Copynumber: 4.2 Consensus size: 40
81726766 CGGATGATAA
* *
81726776 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
81726816 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
81726856 CGAAGGCA-TTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * *
81726895 CGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
81726934 CGAAGG
1 CGAAGG
81726940 TACTTGGTTT
Statistics
Matches: 115, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
39 54 0.47
40 60 0.52
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:81726887 original size:79 final size:79
Alignment explanation
Indices: 81726776--81726939 Score: 228
Period size: 79 Copynumber: 2.1 Consensus size: 79
81726766 CGGATGATAA
* *
81726776 CGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTA
*
81726840 TATCCGGGCTAAGTCC
65 TATCC-GGCTAAATCC
81726856 CGAAGGCA-TTGTGCGAGCT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT
1 CGAAGGCATTTGTGCGAG-TGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT
*
81726918 ATATCCGGTTAAATCC
64 ATATCCGGCTAAATCC
81726934 CGAAGG
1 CGAAGG
81726940 TACTTGGTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
78 18 0.23
79 50 0.65
80 9 0.12
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTAT
ATCCGGCTAAATCC
Found at i:81733770 original size:12 final size:12
Alignment explanation
Indices: 81733753--81733777 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81733743 ATGTAAGTGA
81733753 TCTTGATGATTT
1 TCTTGATGATTT
81733765 TCTTGATGATTT
1 TCTTGATGATTT
81733777 T
1 T
81733778 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:81734676 original size:41 final size:41
Alignment explanation
Indices: 81734625--81734791 Score: 127
Period size: 44 Copynumber: 3.8 Consensus size: 41
81734615 AAAGATGAGT
* *
81734625 GCCAGAGTAAGACATGTCTGGGACATGCCTCAAAAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAAAAGAGATA
* * * ** * *
81734666 GCCAGTGTAAGACGTGTCTAGGACACGCATCGGCTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATC--AAAAGAGAT-A
* *
81734710 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAAGCAGATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCA--AA--AG--A-GATA
81734758 GCCAGTGTAAGACCATGTCTGGGACATGGCATCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCA
81734792 GCAATATATC
Statistics
Matches: 95, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
41 26 0.27
43 6 0.06
44 28 0.29
46 2 0.02
48 12 0.13
49 15 0.16
50 6 0.06
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (41 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAAAAGAGATA
Found at i:81741345 original size:12 final size:12
Alignment explanation
Indices: 81741328--81741352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81741318 ATGTAAGTGA
81741328 TCTTGATGATTT
1 TCTTGATGATTT
81741340 TCTTGATGATTT
1 TCTTGATGATTT
81741352 T
1 T
81741353 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:81742229 original size:47 final size:45
Alignment explanation
Indices: 81742068--81742382 Score: 212
Period size: 47 Copynumber: 6.8 Consensus size: 45
81742058 TGATTTGTGG
* * * *
81742068 GCCAGTGTAAGACGTGTCTGAGACACGCATCGGCTA-AGAG-TTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATAGT
* * * * * *
81742112 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCACGCATAAATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CAGAGAT-AGT
*
81742160 GCCAGTGTAATACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGAT-AGT
* *
81742208 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATA--
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG---C-ACAGAGATAGT
* * * * *
81742255 GCCAGTGTAAGACGTGTTTGGGACACGCATTGGCTA-AGAG-TTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATAGT
* * * * *
81742299 GCAAGTGTAAGACATG-CTGGGACATGCATCAGCACGCATATATGAGG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CAGAGAT-AGT
*
81742346 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
81742383 ATATATCCCA
Statistics
Matches: 211, Mismatches: 39, Indels: 36
0.74 0.14 0.13
Matches are distributed among these distances:
42 2 0.01
43 17 0.08
44 46 0.22
45 2 0.01
46 10 0.05
47 55 0.26
48 33 0.16
49 24 0.11
50 22 0.10
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATAGT
Found at i:81748883 original size:11 final size:11
Alignment explanation
Indices: 81748875--81748932 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
81748865 ATTGAATGAT
81748875 TTATGAATGCA
1 TTATGAATGCA
* *
81748886 TGATGATTGCA
1 TTATGAATGCA
81748897 TTATTGAATG-A
1 TTA-TGAATGCA
81748908 TTTATGAATGCA
1 -TTATGAATGCA
* *
81748920 TGATGATTGCA
1 TTATGAATGCA
81748931 TT
1 TT
81748933 TATTATTAGC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
11 28 0.76
12 9 0.24
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (11 bp):
TTATGAATGCA
Found at i:81748903 original size:34 final size:34
Alignment explanation
Indices: 81748859--81748932 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
81748849 ACCCTTAATA
*
81748859 TGCATAATTGAATGATTTATGAATGCATGATGAT
1 TGCATTATTGAATGATTTATGAATGCATGATGAT
81748893 TGCATTATTGAATGATTTATGAATGCATGATGAT
1 TGCATTATTGAATGATTTATGAATGCATGATGAT
81748927 TGCATT
1 TGCATT
81748933 TATTATTAGC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (34 bp):
TGCATTATTGAATGATTTATGAATGCATGATGAT
Found at i:81759851 original size:43 final size:43
Alignment explanation
Indices: 81759787--81759872 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
81759777 TTGATATCTC
* * *
81759787 AAAGTCCATGGTTGTACCATGGTAATTAAGGAAGAATTGACGG
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGG
* *
81759830 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACGG
81759873 TTAAGGATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 3 0.08
43 34 0.92
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.26
Consensus pattern (43 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGG
Found at i:81763079 original size:53 final size:54
Alignment explanation
Indices: 81762910--81763111 Score: 201
Period size: 53 Copynumber: 3.7 Consensus size: 54
81762900 GGGTGCTACA
* * * * ** *
81762910 AAGACAATGCCAAGGCATGACATTGATAAGTTCTATAAGGTAAGGAAATCATGT
1 AAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGTAAGGGTACCATGT
* * * *
81762964 AAGACCAT-CTCAAGACATGGCATCGATGAGTTACTATAAGGAAAAGGTCCCATGT
1 AAGACCATGC-CAAGACATGGCATTGATGAGTT-CTATAAGGTAAGGGTACCATGT
* * *
81763019 AAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGTAAGGGTACCACGT
1 AAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGTAAGGGTACCATGT
* * ** *
81763072 AAGACCATGTCAAGACATGGCAATGACAAGTTCTAAAAGG
1 AAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGG
81763112 AAAAAGGTTC
Statistics
Matches: 119, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
53 44 0.37
54 31 0.26
55 43 0.36
56 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGTAAGGGTACCATGT
Found at i:81763119 original size:108 final size:109
Alignment explanation
Indices: 81762910--81763115 Score: 274
Period size: 108 Copynumber: 1.9 Consensus size: 109
81762900 GGGTGCTACA
* *
81762910 AAGACAATGCCAAGGCATGACATTGATAAGTTCTATAAGGTAAGGAAATCATGTAAGACCATCTC
1 AAGACAATGCCAAGGCATGACATTGATAAGTTCTATAAGGTAAGGAAACCACGTAAGACCATCTC
** *
81762975 AAGACATGGCATCGATGAGTTACTATAAGGAAAAGGTCCCATGT
66 AAGACATGGCATCGACAAGTTACTAAAAGGAAAAGGTCCCATGT
* * * * ** *
81763019 AAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGTAAGGGTACCACGTAAGACCATGTC
1 AAGACAATGCCAAGGCATGACATTGATAAGTTCTATAAGGTAAGGAAACCACGTAAGACCATCTC
81763083 AAGACATGGCAAT-GACAAGTT-CTAAAAGGAAAA
66 AAGACATGGC-ATCGACAAGTTACTAAAAGGAAAA
81763116 AGGTTCCTAA
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 11 0.13
108 42 0.50
109 31 0.37
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (109 bp):
AAGACAATGCCAAGGCATGACATTGATAAGTTCTATAAGGTAAGGAAACCACGTAAGACCATCTC
AAGACATGGCATCGACAAGTTACTAAAAGGAAAAGGTCCCATGT
Found at i:81766924 original size:47 final size:46
Alignment explanation
Indices: 81766831--81767046 Score: 176
Period size: 46 Copynumber: 4.6 Consensus size: 46
81766821 TTTGTGTGCT
* * * *
81766831 AGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTAT-CAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCC
*
81766877 AGTCTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * *
81766924 AGTGTAAGACATGTCTGAGACATGTATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * *
81766968 AGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-G-GTATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG-ATGT-A-AGCC
*
81767017 AGTGTAAGAACATGTTTGGGACATGGCATC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATC
81767047 AGCATTACAC
Statistics
Matches: 140, Mismatches: 17, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
44 12 0.09
45 20 0.14
46 40 0.29
47 38 0.27
48 2 0.01
49 27 0.19
50 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:81771773 original size:16 final size:17
Alignment explanation
Indices: 81771752--81771786 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
81771742 GATAGAGGTT
81771752 AAGGTACAGAAGAG-AA
1 AAGGTACAGAAGAGTAA
81771768 AAGGTACAGAAGAGTAA
1 AAGGTACAGAAGAGTAA
81771785 AA
1 AA
81771787 TTTCTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.57, C:0.06, G:0.29, T:0.09
Consensus pattern (17 bp):
AAGGTACAGAAGAGTAA
Found at i:81773431 original size:46 final size:47
Alignment explanation
Indices: 81773285--81773495 Score: 215
Period size: 46 Copynumber: 4.6 Consensus size: 47
81773275 TTATTTGTGT
* * *
81773285 GCCAGTGTAAGACATGTCT-GGACATGCATTGGCCAC-ATTATG-AGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGA
* * * *
81773330 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA-CTAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGA
* *
81773378 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
81773424 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT---
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGA
* *
81773468 GTCAGTGTAAGACCATGTCTGAGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
81773496 GAATTGGTAG
Statistics
Matches: 143, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
44 11 0.08
45 27 0.19
46 59 0.41
47 22 0.15
48 23 0.16
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGA
Found at i:81773447 original size:93 final size:92
Alignment explanation
Indices: 81773288--81773457 Score: 254
Period size: 94 Copynumber: 1.8 Consensus size: 92
81773278 TTTGTGTGCC
* * *
81773288 AGTGTAAGACATGTCTGGACATGCATTGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTGGG
1 AGTGTAAGACATGTCTGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGGG
81773353 ACATGGCATCGGCATTGAGACTAGAGCT
66 ACAT-GCATCGGCATTGAGACTAGAGCT
* *
81773381 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATGTA-AGCCAGTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCT-GGACATGCATCGGCCACATGATG-AGAGCCAGTGTAAGACCATGTCTG
81773444 GGACATGCATCGGC
64 GGACATGCATCGGC
81773458 TACGAGATGT
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
92 8 0.11
93 30 0.43
94 31 0.44
95 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGGG
ACATGCATCGGCATTGAGACTAGAGCT
Found at i:81777936 original size:25 final size:24
Alignment explanation
Indices: 81777894--81777974 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
81777884 AGCTCTCTTT
* *
81777894 TGAGCCATAAACCGAGAAGCTCATG
1 TGAGCCATTAA-CAAGAAGCTCATG
81777919 TGAGCCATGTAACAAGAAGCTC-TAG
1 TGAGCCAT-TAACAAGAAGCTCAT-G
* * * * *
81777944 AGAGCCATTAATATGAAGCTTATA
1 TGAGCCATTAACAAGAAGCTCATG
81777968 TGAGCCA
1 TGAGCCA
81777975 ATATCGGGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
24 17 0.38
25 26 0.58
26 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (24 bp):
TGAGCCATTAACAAGAAGCTCATG
Found at i:81777972 original size:24 final size:25
Alignment explanation
Indices: 81777908--81777974 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
81777898 CCATAAACCG
* *
81777908 AGAAGCTCATGTGAGCCATGTAACA
1 AGAAGCTTATATGAGCCATGTAACA
* *
81777933 AGAAGCTCTAGA-GAGCCAT-TAATA
1 AGAAGCT-TATATGAGCCATGTAACA
*
81777957 TGAAGCTTATATGAGCCA
1 AGAAGCTTATATGAGCCA
81777975 ATATCGGGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 3 0.09
24 16 0.47
25 14 0.41
26 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (25 bp):
AGAAGCTTATATGAGCCATGTAACA
Found at i:81778054 original size:27 final size:24
Alignment explanation
Indices: 81777934--81778074 Score: 92
Period size: 24 Copynumber: 5.7 Consensus size: 24
81777924 CATGTAACAA
**
81777934 GAAGCTCTAGAGAGCCATTAAT-AT
1 GAAGCTC-AGAGAGCCATTAATCGG
* * *
81777958 GAAGCTTATATGAGCCAAT-ATCGG
1 GAAGCTCAGA-GAGCCATTAATCGG
* * *
81777982 GAAGTTCAAGCGAGCCA-AAATCGG
1 GAAGCTC-AGAGAGCCATTAATCGG
81778006 GAAGCTCCAGAGAGCCATTAATCGG
1 GAAGCT-CAGAGAGCCATTAATCGG
*
81778031 GAAGCTCATGAAAGAGCCTTTAATC-G
1 GAAGCTCA-G--AGAGCCATTAATCGG
*
81778057 GAAGCTCCGGAGAGCCAT
1 GAAGCT-CAGAGAGCCAT
81778075 ATATCAGGAT
Statistics
Matches: 91, Mismatches: 16, Indels: 20
0.72 0.13 0.16
Matches are distributed among these distances:
23 4 0.04
24 51 0.56
25 15 0.16
26 8 0.09
27 13 0.14
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (24 bp):
GAAGCTCAGAGAGCCATTAATCGG
Found at i:81781721 original size:7 final size:7
Alignment explanation
Indices: 81781711--81781790 Score: 56
Period size: 7 Copynumber: 11.4 Consensus size: 7
81781701 GGTTTATGAC
81781711 TTAGGGT
1 TTAGGGT
81781718 TTAGGGT
1 TTAGGGT
*
81781725 TTAGGATT
1 TTAGG-GT
81781733 TTA-GGT
1 TTAGGGT
*
81781739 TTTGGGT
1 TTAGGGT
81781746 TTAGGGT
1 TTAGGGT
* *
81781753 TTTGAGT
1 TTAGGGT
***
81781760 TTAATTTT
1 TT-AGGGT
81781768 TTA-GGT
1 TTAGGGT
*
81781774 TTCGGGT
1 TTAGGGT
81781781 TTAGGGT
1 TTAGGGT
81781788 TTA
1 TTA
81781791 TGGAAGATCA
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
6 6 0.11
7 42 0.76
8 7 0.13
ACGTcount: A:0.15, C:0.01, G:0.33, T:0.51
Consensus pattern (7 bp):
TTAGGGT
Found at i:81781750 original size:35 final size:35
Alignment explanation
Indices: 81781711--81781790 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
81781701 GGTTTATGAC
* * *
81781711 TTAGGGTTTAGGGTTTAGGATTTTAGGTTTTGGGT
1 TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
* **
81781746 TTAGGGTTTTGAGTTTAATTTTTTAGGTTTCGGGT
1 TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
81781781 TTAGGGTTTA
1 TTAGGGTTTA
81781791 TGGAAGATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.15, C:0.01, G:0.33, T:0.51
Consensus pattern (35 bp):
TTAGGGTTTAGAGTTTAAGATTTTAGGTTTCGGGT
Found at i:81781761 original size:21 final size:21
Alignment explanation
Indices: 81781715--81781755 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81781705 TATGACTTAG
81781715 GGTTTAGGGTTTAGGATTTTA
1 GGTTTAGGGTTTAGGATTTTA
* *
81781736 GGTTTTGGGTTTAGGGTTTT
1 GGTTTAGGGTTTAGGATTTT
81781756 GAGTTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.37, T:0.51
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGATTTTA
Found at i:81781789 original size:28 final size:28
Alignment explanation
Indices: 81781715--81781790 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
81781705 TATGACTTAG
* * *
81781715 GGTTTAGGGTTTAGGATTTTAGGTTTTG
1 GGTTTAGGGTTTAGGGTTTAAGGTTTTA
* * **
81781743 GGTTTAGGGTTTTGAGTTTAATTTTTTA
1 GGTTTAGGGTTTAGGGTTTAAGGTTTTA
*
81781771 GGTTTCGGGTTTAGGGTTTA
1 GGTTTAGGGTTTAGGGTTTA
81781791 TGGAAGATCA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.14, C:0.01, G:0.33, T:0.51
Consensus pattern (28 bp):
GGTTTAGGGTTTAGGGTTTAAGGTTTTA
Found at i:81796854 original size:41 final size:40
Alignment explanation
Indices: 81796727--81796871 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
81796717 CTCGCACAAG
* * * * *
81796727 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
81796767 GCCTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81796807 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81796848 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81796872 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81798699 original size:50 final size:50
Alignment explanation
Indices: 81798584--81798874 Score: 271
Period size: 50 Copynumber: 5.8 Consensus size: 50
81798574 CGAAGCTATA
* * ** **
81798584 TGGTACACATAGTAGCCTACGCTTAGTACTACACATGCAACC-AATAATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
*
81798633 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
* * * * ***
81798683 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATC
* * * *
81798734 GGGTACGCATAGTAGCCTGCAGTTAGTACTACACATGTGACCTAACTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
* * ** * *
81798784 TGGTACACGTAGTAGCCTGCACTTAGTACTATACACATAACGTAAAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATC
*** * *
81798836 TTAAAAACATAGTAGCCTGCACATAGTACTACACATGTG
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
81798875 TTCTCACAAT
Statistics
Matches: 194, Mismatches: 42, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
49 38 0.20
50 82 0.42
51 38 0.20
52 36 0.19
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATC
Found at i:81798864 original size:153 final size:150
Alignment explanation
Indices: 81798585--81798870 Score: 387
Period size: 151 Copynumber: 1.9 Consensus size: 150
81798575 GAAGCTATAT
81798585 GGTACACATAGTAGCCTACGCTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
1 GGTACACATAGTAGCCTACGCTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
** * * * * *
81798650 TGCACTTAGTACTACACATGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACACATAACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
81798715 ACACGTGATTGAAGTTGTCG
131 ACACGTGATTGAAGTTGTCG
* * **
81798735 GGTACGCATAGTAGCCTGCAG-TTAGTACTACACATGTGACCTAACT-ATCTGGTACACGTAGTA
1 GGTACACATAGTAGCCTAC-GCTTAGTACTACACATGCAACC-AA-TAATCTGGTACACGTAGTA
* * *
81798798 GCCTGCACTTAGTACTATACACATAACGTAAAACCATCTTAAAAACATAGTAGCCTGCACATAGT
63 GCCTGCACTTAGTACTACACACATAACCT--AACCATCTGAAAAACATAGTAGCCTGCACATAGT
81798863 ACTACACA
126 ACTACACA
81798871 TGTGTTCTCA
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
150 35 0.30
151 44 0.38
152 1 0.01
153 37 0.32
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACACATAGTAGCCTACGCTTAGTACTACACATGCAACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACATAACCTAACCATCTGAAAAACATAGTAGCCTGCACATAGTACTAC
ACACGTGATTGAAGTTGTCG
Found at i:81802585 original size:42 final size:44
Alignment explanation
Indices: 81802397--81802691 Score: 185
Period size: 48 Copynumber: 6.8 Consensus size: 44
81802387 TATGTGTTAT
* * *
81802397 CATGTAAGACTATATCTAGGATATGGCATT-G-ATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
*
81802439 CA--TAAGACCATGTCTGGGACATGGCATTGACATCGACATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTG-----G-CATATGAGATCC
* * *
81802487 CATGTAAGACAATGTCTGGGACATGGCATTGGCATCGAATGGTGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT---AT-GAGATCC
* * *
81802535 CATTTAAGACCATATCTGGGATATGGCATT-G-ATATGAGATAC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
*
81802577 CATGTAAG-----A-C-----CA-GGCATTGACATATGAGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
* * *
81802609 CATGTAAGACCATGTCTTGGACATGGCATTGGCATCGAGTGGTGATCC
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT--A-T-GAGATCC
* * *
81802657 CTTGTAAGACCATATCTGTGATATGGCATTGGCAT
1 CATGTAAGACCATATCTGGGACATGGCATTGGCAT
81802692 CTTATTATGT
Statistics
Matches: 197, Mismatches: 24, Indels: 58
0.71 0.09 0.21
Matches are distributed among these distances:
30 6 0.03
31 1 0.01
32 18 0.09
36 1 0.01
37 1 0.01
38 1 0.01
40 22 0.11
42 14 0.07
43 4 0.02
44 13 0.07
45 1 0.01
46 4 0.02
47 4 0.02
48 81 0.41
50 26 0.13
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
CATGTAAGACCATATCTGGGACATGGCATTGGCATATGAGATCC
Found at i:81802593 original size:30 final size:31
Alignment explanation
Indices: 81802559--81802620 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 31
81802549 TCTGGGATAT
81802559 GGCATTG-ATATGAGATACCATGTAAGACCA
1 GGCATTGAATATGAGATACCATGTAAGACCA
*
81802589 GGCATTGACATATGAGATCCCATGTAAGACCA
1 GGCATTGA-ATATGAGATACCATGTAAGACCA
81802621 TGTCTTGGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 7 0.24
32 22 0.76
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (31 bp):
GGCATTGAATATGAGATACCATGTAAGACCA
Found at i:81806550 original size:30 final size:30
Alignment explanation
Indices: 81806507--81806575 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
81806497 CACACAAACA
* * * *
81806507 GACACATGGGCGTGTGTCCAGATCGTGTGT
1 GACACACGAGCGTGTGTCCAGACCGCGTGT
* *
81806537 TACACACGAGCGTGTGTCTAGACCGCGTGT
1 GACACACGAGCGTGTGTCCAGACCGCGTGT
81806567 GACACACGA
1 GACACACGA
81806576 CTTGCCCTAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.22, C:0.25, G:0.32, T:0.22
Consensus pattern (30 bp):
GACACACGAGCGTGTGTCCAGACCGCGTGT
Found at i:81809426 original size:15 final size:15
Alignment explanation
Indices: 81809406--81809470 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
81809396 GTATCTTGGG
81809406 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
81809421 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
81809436 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
81809451 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
81809465 TTTCTT
1 TTTCTT
81809471 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.33
15 23 0.53
16 6 0.14
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81810741 original size:49 final size:49
Alignment explanation
Indices: 81810667--81810855 Score: 175
Period size: 50 Copynumber: 3.8 Consensus size: 49
81810657 TAGCCGAAGC
* *
81810667 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACA-TGCAAC-CAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAGTG-AACACAA
* * * *
81810715 TAGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAAGTGACCTCAC
1 TA-TCTGGTACACATAGTAGCCTGCACTTAGTACTACAC-AGTGAACACAA
* ** * * * *
81810766 CATCTAATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-GTGAACACA-A
* * *
81810817 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
81810856 TGCGACCTCA
Statistics
Matches: 115, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.02
49 34 0.30
50 43 0.37
51 36 0.31
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACAGTGAACACAA
Found at i:81812905 original size:13 final size:13
Alignment explanation
Indices: 81812868--81812906 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
81812858 ATTATTCATT
*
81812868 TTTTAACATATTA
1 TTTTAATATATTA
81812881 TTTTAATATATTA
1 TTTTAATATATTA
81812894 TTTTGAAT-TATTA
1 TTTT-AATATATTA
81812907 ATTTCACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 21 0.88
14 3 0.12
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTTAATATATTA
Found at i:81812981 original size:16 final size:16
Alignment explanation
Indices: 81812962--81813012 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
81812952 TTTGAATTGT
81812962 TTTATTATATAATTTA
1 TTTATTATATAATTTA
* *
81812978 TTTATTTTA-AAATTA
1 TTTATTATATAATTTA
* *
81812993 TCTCTTATATAATTCTA
1 TTTATTATATAATT-TA
81813010 TTT
1 TTT
81813013 TTTAAAGGTT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
15 11 0.42
16 11 0.42
17 4 0.15
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATTATATAATTTA
Found at i:81813617 original size:16 final size:15
Alignment explanation
Indices: 81813572--81813620 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
81813562 TTGAATTTTA
81813572 TATTTTATATATTATT
1 TATTTTATAT-TTATT
*
81813588 TATTCTTATTTTTATT
1 TATT-TTATATTTATT
81813604 TATTTTATAATTTATT
1 TATTTTAT-ATTTATT
81813620 T
1 T
81813621 CAAATTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 4 0.14
16 20 0.69
17 5 0.17
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTATATTTATT
Found at i:81814295 original size:125 final size:127
Alignment explanation
Indices: 81814068--81814295 Score: 309
Period size: 127 Copynumber: 1.8 Consensus size: 127
81814058 ACTTCTCAAA
* * * *
81814068 ACAAGGTAATATTTCGTATTTGGTAATTCGAGAAATCGTGCCCTAATGTGCTGGGTTTCGATTTT
1 ACAAGGCAATATTTCGTATTTGATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTTT
** * *
81814133 CCGTTTGACTGAATAACTAAATATCCTTTCAAGATTTCGTCTATATTTTCTTAAATTAAAAC
66 CCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTCGTCTATATTTTCTTAAATTAAAAC
* * * *
81814195 ACAAGGCAATATTTCGTGTTTAGAT-ATTCGAGGAATTGTACCCTAACGTG-TTGGTTTCGATTT
1 ACAAGGCAATATTTCGTATTT-GATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTT
*
81814258 TCCG-TTGACCAAATAACCAAATATCCTTTGAAAATTTC
65 TCCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTC
81814296 AATGCATGAA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 29 0.33
126 16 0.18
127 40 0.46
128 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (127 bp):
ACAAGGCAATATTTCGTATTTGATAATTCGAGAAATCGTACCCTAACGTGCTGGGTTTCGATTTT
CCGTTTGACCAAATAACCAAATATCCTTTCAAAATTTCGTCTATATTTTCTTAAATTAAAAC
Found at i:81817367 original size:26 final size:26
Alignment explanation
Indices: 81817338--81817392 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
81817328 TGATAAAAAT
81817338 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81817364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81817390 TGA
1 TGA
81817393 AGGGCATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81818910 original size:26 final size:26
Alignment explanation
Indices: 81818880--81818932 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
81818870 TTTATAGTTT
81818880 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
81818906 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
81818932 T
1 T
81818933 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:81824047 original size:26 final size:26
Alignment explanation
Indices: 81824018--81824073 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
81824008 TGATAAAAAT
*
81824018 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81824044 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81824070 TGAT
1 TGAT
81824074 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81836109 original size:39 final size:40
Alignment explanation
Indices: 81835932--81836109 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
81835922 CGAATGATAA
* * * * *
81835932 CCGGGCTAGGTCCCGAAGGCCTTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA-T
81835972 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
*
81836012 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
81836052 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
*
81836092 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
81836110 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:81838110 original size:178 final size:178
Alignment explanation
Indices: 81837798--81838520 Score: 964
Period size: 178 Copynumber: 4.1 Consensus size: 178
81837788 GAATTCACAA
* * ** *
81837798 ATCTTATCTTCTTGAGATAGCAGTGGAGCAGATCGAAGACAATGAATCTTATTTTCCCGAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCGAGGTAG
* * * * * ** * *
81837863 CAGGGGGGCAGATTTTAGCCACCAGCCTTATTTCCCTGAGGTAGCGAGGGAATAAGCTGAAGATT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
*
81837928 GTAGTCTTATCTTCCTGAGGTAGCAAGGGAGTAGACTGAAGATTGAAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAG
* ** * * *
81837976 ATCTTATCTCCTTGAGATAGCAGTGGAGCAGATAAAAAACGGTGAATCTTATCTTCCCGAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCGAGGTAG
* *
81838041 CAGGGGAGCAGATTTTAGCCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
* * * *
81838106 GTAGTCTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAG
* *
81838154 ATCTTATCTCCCTGAGATAGCAGTAGAGCAGATCGAAGACAGCGAATCTTATCTTCTCGAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCGAGGTAG
* * * * *
81838219 CAGAGGAGTAGATTTTAACCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
* * *
81838283 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGACGATTGTAG
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAG
* * ** * *
81838331 ATCTTATCTCCCTAAG-TAGTAGTGGAGCAGATCGAAGATGGCGAATCTCATCTTCCCAAGGTAG
1 ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCGAGGTAG
* *
81838395 CAAGGGAGTAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
66 CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
* * * * * *
81838460 GTAGTCTTATCTTCCTGAGATAGTAAGGAAGTAGATTGAGGATTGTAC
131 GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAG
*
81838508 ATCTTATTTCCCT
1 ATCTTATCTCCCT
81838521 AACCAGAAGT
Statistics
Matches: 484, Mismatches: 60, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
176 68 0.14
177 176 0.36
178 240 0.50
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (178 bp):
ATCTTATCTCCCTGAGATAGCAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCCCGAGGTAG
CAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATT
GTAGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGACTGAAGATTGAAG
Found at i:81838175 original size:45 final size:45
Alignment explanation
Indices: 81837889--81838175 Score: 144
Period size: 44 Copynumber: 6.4 Consensus size: 45
81837879 AGCCACCAGC
* * ** * *
81837889 CTTATTTCCCTGAGGTAGCGAGGGAATA-AGCTGAAGATTGTAG-T
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGA-CTGAATATTGAAGAT
* * *
81837933 CTTATCTTCCTGAGGTAGCAAGGGAGTAGACTGAAGATTGAAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAATATTGAAGAT
* * * * ** **
81837978 CTTATCTCCTTGAGATAGC-AGTGGAGCAGA-TAAAAAACGGTGAAT
1 CTTATCTCCCTGAGGTAGCAAG-GGAGCAGACTGAATATTGAAG-AT
* ** *** *
81838023 CTTATCTTCCC-GAGGTAGCAGGGGAGCAGA-T-TTTAGCCACCA-AC
1 CTTATC-TCCCTGAGGTAGCAAGGGAGCAGACTGAATATTGA--AGAT
* * ** *
81838067 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGT-TTGTAG-T
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAA-TATTGAAGAT
** *
81838111 CTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAATATTGAAGAT
*
81838156 CTTATCTCCCTGAGATAGCA
1 CTTATCTCCCTGAGGTAGCA
81838176 GTAGAGCAGA
Statistics
Matches: 182, Mismatches: 46, Indels: 29
0.71 0.18 0.11
Matches are distributed among these distances:
43 4 0.02
44 105 0.58
45 68 0.37
46 4 0.02
47 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (45 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAATATTGAAGAT
Found at i:81838469 original size:44 final size:44
Alignment explanation
Indices: 81838067--81838506 Score: 186
Period size: 44 Copynumber: 10.0 Consensus size: 44
81838057 AGCCACCAAC
* *
81838067 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* * * * * *
81838111 CTTATCTTTCTGAGGTAGCAAGGGAGAAGACTGAATATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAG-T
* * * ** * *
81838156 CTTATCTCCCTGAGATAGC-AGTAGAGCAGATCGAAGACAGCGAAT
1 CTTATCTCTCTGAGGTAGCAAG-AGAGCAGATTGAAGATTG-TAGT
* * * ** *
81838201 CTTATCT-TCTCGAGGTAGC-AGAGGAGTAGATTTTAACCA--CCAGC
1 CTTATCTCTCT-GAGGTAGCAAGA-GAGCAGA-TTGAA-GATTGTAGT
* * *
81838245 CTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* *
81838288 CTTATCT-TCCTGAGGTAGCAAG-GAAGCAGACTGACGATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG-T
* * * * * * * *
81838333 CTTATCTCCCT-AAGTAG-TAGTGGAGCAGATCGAAGATGGCGAAT
1 CTTATCTCTCTGAGGTAGCAAG-AGAGCAGATTGAAGATTG-TAGT
* ** * * ** ***** *
81838377 CTCATCT-TCCCAAGGTAGCAAGGGAGTAGATTTTAGCCACCAGC
1 CTTATCTCT-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
*
81838421 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* * * *
81838465 CTTATCT-TCCTGAGATAGTAAG-GAAGTAGATTGAGGATTGTA
1 CTTATCTCT-CTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTA
81838507 CATCTTATTT
Statistics
Matches: 285, Mismatches: 86, Indels: 50
0.68 0.20 0.12
Matches are distributed among these distances:
42 4 0.01
43 28 0.10
44 167 0.59
45 79 0.28
46 6 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
Found at i:81838599 original size:177 final size:174
Alignment explanation
Indices: 81837814--81838605 Score: 769
Period size: 177 Copynumber: 4.5 Consensus size: 174
81837804 TCTTCTTGAG
* **** * * ** * * *
81837814 ATAGCAGTGGAGCAGATCGAAGACAATGAATCTTATTTTCCCGAGGTAGCAGGGGGGCAGATTTT
1 ATAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGATTTA
* * * * ** * * *
81837879 AGCCACCAGCCTTATTTCCCTGAGGTAGCGAGGGAATAAGCTGAAGATTGTAGTCTTATCTTCCT
66 AG--ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCT
* * * *
81837944 GAGGTAGCAAGGGAGTAGACTGAAGATTGAAGATCTTATCTCCTTGA
129 GAGGTAGCAAGGAAGAAGACTGAAGATTGTAGATCTTATCTCCCT-A
* ** * * * * ** *
81837991 GATAGCAGTGGAGCAGATAAAAAACGGTGAATCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTT
1 -ATAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGATTT
* * *
81838056 TAGCCACCAACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTTC
65 AAG--ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCC
* * *
81838121 TGAGGTAGCAAGGGAGAAGACTGAATATTGAAGATCTTATCTCCCTGA
128 TGAGGTAGCAAGGAAGAAGACTGAAGATTGTAGATCTTATCTCCCT-A
* * ** * * *
81838169 GATAGCAGTAGAGCAGATCGAAGACAGCGAATCTTATCTTCTCGAGGTAGCAGAGGAGTAGATTT
1 -ATAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGA-TT
* *
81838234 TAACCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGTTTGTAGTCTTATCTTCC
64 TAA-GACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCC
* *
81838298 TGAGGTAGCAAGGAAGCAGACTGACGATTGTAGATCTTATCTCCCTA
128 TGAGGTAGCAAGGAAGAAGACTGAAGATTGTAGATCTTATCTCCCTA
* * *
81838345 AGTAGTAGTGGAGCAGATCGAAGATGGCGAATCTCATCTTCCCAAGGTAGCAAGGGAGTAGATTT
1 A-TAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGATTT
* *
81838410 TAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCC
65 AAG--ACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCC
* * * * * * *
81838475 TGAGATAGTAAGGAAGTAGATTGAGGATTGTACATCTTATTTCCCTA
128 TGAGGTAGCAAGGAAGAAGACTGAAGATTGTAGATCTTATCTCCCTA
* * * * * * *
81838522 ACCAGAAGTGGAACAAATC-AAGGATGGCAAATCTTATCTTCCCAAGGTAGTAAAGGAGCATATT
1 A-TAGAAGTGGAGCAGATCGAA-GATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGATT
*
81838586 GAAGATGCCAGCCTTATCTC
64 TAAGA--CCAGCCTTATCTC
81838606 CCTAAACTTG
Statistics
Matches: 532, Mismatches: 73, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
175 6 0.01
176 64 0.12
177 240 0.45
178 218 0.41
179 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (174 bp):
ATAGAAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCCAAGGTAGCAAAGGAGTAGATTTA
AGACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGTTTGTAGTCTTATCTTCCTGA
GGTAGCAAGGAAGAAGACTGAAGATTGTAGATCTTATCTCCCTA
Found at i:81840884 original size:16 final size:16
Alignment explanation
Indices: 81840850--81840887 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81840840 ATTTTATGTA
*
81840850 TTATTTATTCTTATTT
1 TTATTTATTCTTATAT
81840866 TTATTTATT-TTATAAT
1 TTATTTATTCTTAT-AT
81840882 TTATTT
1 TTATTT
81840888 CAAATTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
TTATTTATTCTTATAT
Found at i:81844396 original size:57 final size:58
Alignment explanation
Indices: 81844302--81844441 Score: 147
Period size: 57 Copynumber: 2.4 Consensus size: 58
81844292 TGTATACGAT
* ** ** * * * *
81844302 AGGATTACCAGTCCAAGCTAAATCCTTTTTATGACATATGCTCTAAAGAACTTG-ATT
1 AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
* * * *
81844359 TGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAGAGGATTTGTATA
1 AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
*
81844417 AGGATTACCCATCCGGGCTAAATCC
1 AGGATTACCCGTCCGGGCTAAATCC
81844442 TTTCTGTAAT
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 42 0.63
58 25 0.37
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (58 bp):
AGGATTACCCGTCCGGGCTAAATCCAATTCATAACATATGCTCGAAAGAACTTGTATA
Found at i:81855304 original size:28 final size:29
Alignment explanation
Indices: 81855272--81855385 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
81855262 TGCCTGTATT
* *
81855272 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
81855300 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
81855329 TGGCCTATTAGGCCCAAATCACATTTC-TA
1 TGGCCCATTAGGCCCAAATCACA-TTCATA
* *
81855358 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
81855386 ATAATGCTCA
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.04
28 22 0.30
29 46 0.63
30 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:81855369 original size:58 final size:57
Alignment explanation
Indices: 81855264--81855373 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
81855254 ATTTCACATG
* *
81855264 CCTGTATTTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATCA
1 CCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCA
* * *
81855321 CCTGTATATGGCCTATTAGGCCCAAATCACATTTC-TATGGCCCGTTAGGCCCA
1 CCTGTATATGGCCCATTAAGCCC-AATCACA-TTCATATGGCCCATTAGGCCCA
81855374 GTCACATTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 20 0.43
58 23 0.50
59 3 0.07
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.28
Consensus pattern (57 bp):
CCTGTATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCA
Found at i:81855628 original size:16 final size:16
Alignment explanation
Indices: 81855603--81855639 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
81855593 AAACTTTTCA
*
81855603 CTTTTTGGCATTTCGG
1 CTTTTCGGCATTTCGG
81855619 CTTTTCGGCATTTCGG
1 CTTTTCGGCATTTCGG
81855635 CTTTT
1 CTTTT
81855640 GCCGATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (16 bp):
CTTTTCGGCATTTCGG
Done.