Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 242 of 362
Found at i:81858124 original size:47 final size:47
Alignment explanation
Indices: 81857910--81858637 Score: 918
Period size: 47 Copynumber: 15.4 Consensus size: 47
81857900 CCCTTCGGGA
* * * * * * *
81857910 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81857956 CCTGTCACATATATACACTTT--CATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81858001 CTTATCACATATATACACTTT-ACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81858047 CTTAT-AC--ATATACAC-TTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81858090 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81858137 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81858184 CTTATTACACATAT-TAGGC-CTTATTACACATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTA-T-CACATATATA--CAC-T-TT-CACAT-T-CA---T--C-------ACATCGGCCATTA
81858247 GGC
45 GGC
* *
81858250 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81858297 CTTATCACATA-ATTACACTTTCACATTCATCACATCGGCTATTAGG-
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
**
81858343 CTTATCACGCATATACACTTTCACATTCATCACAT-GGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81858388 CTTATCACATATATAC-CTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81858434 CTTAT-ACACATATACAC-TTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81858478 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81858525 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81858572 CTTATCACACATATAACACTTTCACATTCCTCACATC-GCCATTAGGC
1 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGC
81858619 CTTATCACATATATACACT
1 CTTATCACATATATACACT
81858638 GTCTTGGCTG
Statistics
Matches: 609, Mismatches: 33, Indels: 80
0.84 0.05 0.11
Matches are distributed among these distances:
42 2 0.00
43 37 0.06
44 52 0.09
45 89 0.15
46 116 0.19
47 225 0.37
48 24 0.04
49 8 0.01
50 2 0.00
51 2 0.00
52 5 0.01
53 1 0.00
54 3 0.00
56 1 0.00
57 1 0.00
59 3 0.00
60 1 0.00
61 5 0.01
62 2 0.00
63 2 0.00
64 7 0.01
65 3 0.00
66 18 0.03
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81858200 original size:19 final size:19
Alignment explanation
Indices: 81858176--81858216 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81858166 TCACATCGAC
81858176 TATTAGGCCTTATTACACA
1 TATTAGGCCTTATTACACA
81858195 TATTAGGCCTTATTACACA
1 TATTAGGCCTTATTACACA
81858214 TAT
1 TAT
81858217 ACACTTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.39
Consensus pattern (19 bp):
TATTAGGCCTTATTACACA
Found at i:81858202 original size:66 final size:66
Alignment explanation
Indices: 81858130--81858263 Score: 223
Period size: 66 Copynumber: 2.0 Consensus size: 66
81858120 CACATCGGCC
* * *
81858130 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATTACACA
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACA
81858195 T
66 T
* *
81858196 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
1 ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACA
81858261 T
66 T
81858262 AT
1 AT
81858264 ACACTTTCAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (66 bp):
ATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACACA
T
Found at i:81858239 original size:160 final size:160
Alignment explanation
Indices: 81858040--81858538 Score: 611
Period size: 160 Copynumber: 3.0 Consensus size: 160
81858030 CACATCGGCC
*
81858040 ATTAGGCCTTA-T--ACATATACAC-TTCACATTCATCACATCGGCTATTAGGCCTTATCACACA
1 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
81858101 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
* *
81858166 TCACATCGACTATTAGGCCTTATTACACAT
131 TCACATCGGCTATTAGGCCTTATCACACAT
81858196 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
1 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
*
81858261 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA-ATTACACTTTCACATTC
66 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TACACTTTCACATTC
*
81858325 ATCACATCGGCTATTAGG-CTTATCACGCAT
130 ATCACATCGGCTATTAGGCCTTATCACACAT
* ** *
81858355 ATACACTTTCACATTCATCACATGGCCATTAGCCTTATCACATATATACCTTTCACATTCATCAC
1 AT-TA--GGC-C-TT-ATTACA----C---A----TAT-AC------A-CTTTCACATTCATCAC
81858420 ATCGGCCATTAGGCCTTAT-ACACATATACAC-TTCACATTCATCACATC-GCCATTAGGCCTTA
41 ATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
81858482 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
106 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACAT
81858537 AT
1 AT
81858539 ACACTTTCAC
Statistics
Matches: 299, Mismatches: 12, Indels: 38
0.86 0.03 0.11
Matches are distributed among these distances:
156 11 0.04
157 1 0.00
159 23 0.08
160 117 0.39
162 1 0.00
163 1 0.00
164 2 0.01
165 5 0.02
169 1 0.00
172 1 0.00
176 3 0.01
177 2 0.01
181 53 0.18
182 30 0.10
183 13 0.04
184 35 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (160 bp):
ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCTATTAGGCCTTATCACACAT
Found at i:81858280 original size:113 final size:113
Alignment explanation
Indices: 81858082--81858301 Score: 413
Period size: 113 Copynumber: 1.9 Consensus size: 113
81858072 TCACATCGGC
*
81858082 TATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 TATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
81858147 ATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATTACACA
66 ATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATTACACA
*
81858195 TATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 TATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
81858260 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
66 ATATACACTTTCACATTCATCACATCGACTATTAGGCCTTAT
81858302 CACATAATTA
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 104 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (113 bp):
TATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
ATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATTACACA
Found at i:81858494 original size:228 final size:234
Alignment explanation
Indices: 81858196--81858634 Score: 775
Period size: 228 Copynumber: 1.9 Consensus size: 234
81858186 TATTACACAT
81858196 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
1 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
81858261 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA-ATTACACTTTCACATTC
66 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATA-TACACTTTCACATTC
* * *
81858325 ATCACATCGGCTATTAGG-CTTATCACGCATAT-ACACTTTCACATTCATCACATGGCCATTA-G
130 ATCACATCGGCCATTAGGCCTTATCACACATATAACACTTTCACATTCATCACATCGCCATTAGG
81858387 CCTTATCACATATATACCTTTCACATTCATCACATCGGCC
195 CCTTATCACATATATACCTTTCACATTCATCACATCGGCC
*
81858427 ATTAGGCCTTA-TACACATATACAC-TTCACATTCATCACATC-GCCATTAGGCCTTATCACATA
1 ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
81858489 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
66 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
*
81858554 TCACATCGGCCATTAGGCCTTATCACACATATAACACTTTCACATTCCTCACATCGCCATTAGGC
131 TCACATCGGCCATTAGGCCTTATCACACATATAACACTTTCACATTCATCACATCGCCATTAGGC
81858619 CTTATCACATATATAC
196 CTTATCACATATATAC
81858635 ACTGTCTTGG
Statistics
Matches: 199, Mismatches: 5, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
228 99 0.50
229 31 0.16
230 40 0.20
231 29 0.15
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (234 bp):
ATTAGGCCTTATTACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACA
TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACACATATAACACTTTCACATTCATCACATCGCCATTAGGC
CTTATCACATATATACCTTTCACATTCATCACATCGGCC
Found at i:81860071 original size:21 final size:21
Alignment explanation
Indices: 81860028--81860071 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
81860018 CCAAAACCAT
* *
81860028 AAACTCAATTCATATAACACC
1 AAACTCAATGCAAATAACACC
81860049 AAACTCAATGCTAAATAAC-CC
1 AAACTCAATGC-AAATAACACC
81860070 AA
1 AA
81860072 GGCACAATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.20
Consensus pattern (21 bp):
AAACTCAATGCAAATAACACC
Found at i:81862443 original size:6 final size:6
Alignment explanation
Indices: 81862432--81862555 Score: 84
Period size: 6 Copynumber: 21.3 Consensus size: 6
81862422 AACCAAAATG
* * *
81862432 AGAATC AGAATC AGAAT- ATAA-C AGAAT- AGAATC AGAATC A-TATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* * *
81862476 AGTA-C AGAATC AGAAT- AGAATC AGAATT AG-GTGAC AGAAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AG-AATC AGAATC
* *
81862524 AGTATT AGTAA-C AGAATC AGAATC AGAATC AG
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AG
81862556 TATTAGTAAC
Statistics
Matches: 92, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
5 25 0.27
6 60 0.65
7 6 0.07
9 1 0.01
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:81862458 original size:10 final size:11
Alignment explanation
Indices: 81862432--81862502 Score: 65
Period size: 11 Copynumber: 6.5 Consensus size: 11
81862422 AACCAAAATG
81862432 AGAATCAGAATC
1 AGAAT-AGAATC
*
81862444 AGAATATAA-C
1 AGAATAGAATC
81862454 AGAATAGAATC
1 AGAATAGAATC
* *
81862465 AGAATCA-TATT
1 AGAAT-AGAATC
* *
81862476 AGTACAGAATC
1 AGAATAGAATC
81862487 AGAATAGAATC
1 AGAATAGAATC
81862498 AGAAT
1 AGAAT
81862503 TAGGTGACAG
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
10 10 0.22
11 30 0.65
12 6 0.13
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.21
Consensus pattern (11 bp):
AGAATAGAATC
Found at i:81862540 original size:18 final size:18
Alignment explanation
Indices: 81862517--81862570 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
81862507 TGACAGAAAT
81862517 CAGAATCAGTATTAGTAA
1 CAGAATCAGTATTAGTAA
81862535 CAGAATCAG-A--A-T--
1 CAGAATCAGTATTAGTAA
81862547 CAGAATCAGTATTAGTAA
1 CAGAATCAGTATTAGTAA
81862565 CAGAAT
1 CAGAAT
81862571 TATGTGACAG
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
14 1 0.03
15 2 0.07
16 1 0.03
17 1 0.03
18 15 0.50
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (18 bp):
CAGAATCAGTATTAGTAA
Found at i:81862550 original size:30 final size:29
Alignment explanation
Indices: 81862432--81862570 Score: 161
Period size: 30 Copynumber: 5.0 Consensus size: 29
81862422 AACCAAAATG
*
81862432 AGAATCAGAATCAG-AATA-TAACAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAAT
81862459 AGAATCAGAATCA-TATTAGT-ACAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAAT
* *
81862486 CAGAAT-AGAATCAGAATTAGGTGACAG---
1 -AGAATCAGAATCAGTATTA-GTAACAGAAT
81862513 A-AATCAGAATCAGTATTAGTAACAGAAT
1 AGAATCAGAATCAGTATTAGTAACAGAAT
81862541 CAGAATCAGAATCAGTATTAGTAACAGAAT
1 -AGAATCAGAATCAGTATTAGTAACAGAAT
81862571 TATGTGACAG
Statistics
Matches: 96, Mismatches: 4, Indels: 21
0.79 0.03 0.17
Matches are distributed among these distances:
25 9 0.09
26 13 0.14
27 30 0.31
28 10 0.10
29 3 0.03
30 31 0.32
ACGTcount: A:0.49, C:0.12, G:0.17, T:0.22
Consensus pattern (29 bp):
AGAATCAGAATCAGTATTAGTAACAGAAT
Found at i:81862742 original size:26 final size:25
Alignment explanation
Indices: 81862712--81862781 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 25
81862702 CAGCTGGCTG
*
81862712 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATAT-GTGACAGAGCCA
*
81862738 CCAGATACAGATATGTGGCAGAGCCA
1 CCAGA-ACAGATATGTGACAGAGCCA
81862764 CCAGAATCAGATAATGTG
1 CCAGAA-CAGAT-ATGTG
81862782 GCAAACCACC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
25 1 0.03
26 25 0.64
27 13 0.33
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.17
Consensus pattern (25 bp):
CCAGAACAGATATGTGACAGAGCCA
Found at i:81862790 original size:26 final size:26
Alignment explanation
Indices: 81862712--81862791 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
81862702 CAGCTGGCTG
* **
81862712 CCAGA-ACAGATATCGTGACAGAGTCA
1 CCAGATACAGATAT-GTGGCAGAACCA
*
81862738 CCAGATACAGATATGTGGCAGAGCCA
1 CCAGATACAGATATGTGGCAGAACCA
81862764 CCAGA-ATCAGATAATGTGGCA-AACCA
1 CCAGATA-CAGAT-ATGTGGCAGAACCA
81862790 CC
1 CC
81862792 TAACAGAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 31 0.65
27 16 0.33
ACGTcount: A:0.38, C:0.25, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGATACAGATATGTGGCAGAACCA
Found at i:81862981 original size:22 final size:22
Alignment explanation
Indices: 81862949--81863006 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
81862939 TAAATACGTT
*
81862949 TGGCACGAAGCCATAGTCAGGA
1 TGGCACAAAGCCATAGTCAGGA
* * *
81862971 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAGGA
*
81862993 TGGCACAGAGCCAT
1 TGGCACAAAGCCAT
81863007 TAATAATGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAGGA
Found at i:81863159 original size:27 final size:26
Alignment explanation
Indices: 81863094--81863176 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
81863084 TCGATCGGTC
* * *
81863094 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
81863120 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
81863147 AACAGATATTTGTGGCATAGCTACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
81863174 AAC
1 AAC
81863177 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:81863412 original size:26 final size:27
Alignment explanation
Indices: 81863373--81863562 Score: 194
Period size: 27 Copynumber: 7.3 Consensus size: 27
81863363 GGGGCAAAAT
* *
81863373 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81863400 GGTAA-TCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81863426 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
81863453 GATAATTCTAACTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81863480 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81863507 AGTAATTCTACCCTA-TAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
81863533 --AAATTCTA-CCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
81863556 AGTAATT
1 GGTAATT
81863563 GCACAATCAA
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
23 7 0.05
24 12 0.09
25 4 0.03
26 32 0.24
27 80 0.59
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:81863602 original size:27 final size:27
Alignment explanation
Indices: 81863567--81863813 Score: 252
Period size: 27 Copynumber: 9.2 Consensus size: 27
81863557 GTAATTGCAC
*
81863567 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81863594 AATCGAGGGTAAAATGATAATT-TGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81863620 AA-CTGAGGGT-AAACTAGTAATTCTTTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
81863647 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
81863674 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *** *
81863701 AATCAAGGGTAAAGTAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81863728 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * *
81863755 AACCGGGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
81863782 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
81863809 AATCG
1 AATCG
81863814 GGAGTACTTT
Statistics
Matches: 183, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
25 4 0.02
26 19 0.10
27 153 0.84
28 7 0.04
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:81865833 original size:6 final size:6
Alignment explanation
Indices: 81865822--81866008 Score: 136
Period size: 6 Copynumber: 30.8 Consensus size: 6
81865812 AACCAAAATG
*
81865822 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * * *
81865870 AG-TTAC AGAATC AGAATC AGAATC AAAATT AG-GTGAC AGAATT AGAATC
1 AGAAT-C AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
81865919 AGAATT AGTAA-C AGAATT AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
81865967 AGAATC AGAATC AGAATT ATGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
81866009 GTGAATGCAA
Statistics
Matches: 141, Mismatches: 24, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
5 10 0.07
6 119 0.84
7 10 0.07
8 2 0.01
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.22
Consensus pattern (6 bp):
AGAATC
Found at i:81865878 original size:30 final size:30
Alignment explanation
Indices: 81865822--81866008 Score: 235
Period size: 30 Copynumber: 6.4 Consensus size: 30
81865812 AACCAAAATG
*
81865822 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
81865852 AGAATCAGAATCA-ATATTAGTTACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
81865882 AGAATCAGAATCAAAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
* *
81865907 AGAATTAGAATCAGAATTAGTAACAGAATT
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
81865937 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
81865967 AGAATCAGAATCAGAATTATGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
81865998 AGAATCAGAAT
1 AGAATCAGAAT
81866009 GTGAATGCAA
Statistics
Matches: 137, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
24 2 0.01
25 18 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 88 0.64
31 24 0.18
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.22
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:81865921 original size:85 final size:85
Alignment explanation
Indices: 81865822--81866008 Score: 311
Period size: 85 Copynumber: 2.2 Consensus size: 85
81865812 AACCAAAATG
*
81865822 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTTACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
81865887 CAGAATCAAAATTAGGTGAC
66 CAGAATCAAAATTAGGTGAC
* * * *
81865907 AGAATTAGAATCAGAATTAGTAACAGAATTAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
* *
81865972 CAGAATCAGAATTATGTGAC
66 CAGAATCAAAATTAGGTGAC
81865992 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
81866009 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.22
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAAAATTAGGTGAC
Found at i:81866163 original size:27 final size:26
Alignment explanation
Indices: 81866126--81866191 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
81866116 AGCATGGCTG
*
81866126 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
81866152 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
81866179 CCAGAATCAGATA
1 CCAGAA-CAGATA
81866192 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:81866196 original size:27 final size:27
Alignment explanation
Indices: 81866126--81866199 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
81866116 AGCATGGCTG
* *
81866126 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
81866152 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
81866179 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
81866200 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:81866206 original size:27 final size:27
Alignment explanation
Indices: 81866150--81866207 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
81866140 GTGACAGAGT
* * *
81866150 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
81866177 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
81866204 CACC
1 CACC
81866208 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:81866412 original size:22 final size:22
Alignment explanation
Indices: 81866364--81866422 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
81866354 GTAAATACGT
*
81866364 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
81866386 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
81866408 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
81866423 TAATAACGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:81866588 original size:27 final size:26
Alignment explanation
Indices: 81866509--81866591 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
81866499 TCGATCGGTC
* * *
81866509 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
81866535 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
81866562 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
81866589 AAC
1 AAC
81866592 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:81866820 original size:27 final size:27
Alignment explanation
Indices: 81866791--81866984 Score: 228
Period size: 27 Copynumber: 7.2 Consensus size: 27
81866781 GGGAAAAATG
* * * *
81866791 GTAATTTTACCCTAAAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
81866818 GTAA-TCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
81866844 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * **
81866871 ATAATTCTACCTTACAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81866898 GTAATTCTATCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
81866925 CTAATTCTACCCTATATGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
81866952 GAAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
81866979 GTAATT
1 GTAATT
81866985 GCATAATCAA
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 21 0.15
27 119 0.85
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:81867019 original size:27 final size:27
Alignment explanation
Indices: 81866989--81867236 Score: 250
Period size: 27 Copynumber: 9.2 Consensus size: 27
81866979 GTAATTGCAT
*
81866989 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
81867016 AATCGAGGGTAAAGCGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
81867043 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTATA
** * *
81867070 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
81867097 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
81867124 AATCGAGGGTAAAGCAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
81867151 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
81867178 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
81867205 GA-CTGAGGATAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
81867232 AATCG
1 AATCG
81867237 GGAGTACTTT
Statistics
Matches: 181, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.03
27 171 0.94
28 5 0.03
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:81867066 original size:54 final size:54
Alignment explanation
Indices: 81866994--81867236 Score: 283
Period size: 54 Copynumber: 4.5 Consensus size: 54
81866984 TGCATAATCA
* * * * *
81866994 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAGC-GATAATTTTGTAAACTG
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTATAAACTG
* * ** * * *
81867048 AGGGTAAACTAGTAATTCTGTAAATTAAGGGTAAAACGGTAATTTTACAAA-TCG
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACT-G
* * *
81867102 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAGCAGTAATTCTATAAATTG
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTG
* * *
81867156 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAGACTG
1 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTG
*
81867210 AGGATAAAATGGTAATTCTGTAAATCG
1 AGGGTAAAATGGTAATTCTGTAAATCG
81867237 GGAGTACTTT
Statistics
Matches: 160, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 157 0.98
55 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (54 bp):
AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTG
Found at i:81867100 original size:81 final size:81
Alignment explanation
Indices: 81866993--81867234 Score: 310
Period size: 81 Copynumber: 3.0 Consensus size: 81
81866983 TTGCATAATC
* *
81866993 AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAGCGATAATTTTGTAAACTGAGGGTAAACT
1 AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACT
81867058 AGTAATTCTGTAAATT
66 AGTAATTCTGTAAATT
* * * * *
81867074 AAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATGGTAATTCTATAAA-TCGAGGGTAAAG
1 AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACT-GAGGGTAAA-
*
81867138 C-AGTAATTCTATAAATT
64 CTAGTAATTCTGTAAATT
* * * * *
81867155 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC-AGTAATTCTGTAGACTGAGGATAAAA
1 AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAACTGAGGGTAAAC
*
81867219 TGGTAATTCTGTAAAT
65 TAGTAATTCTGTAAAT
81867235 CGGGAGTACT
Statistics
Matches: 136, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
80 1 0.01
81 133 0.98
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
AAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAACTGAGGGTAAACT
AGTAATTCTGTAAATT
Found at i:81874964 original size:43 final size:43
Alignment explanation
Indices: 81874800--81874964 Score: 149
Period size: 43 Copynumber: 3.8 Consensus size: 43
81874790 TTACGATATG
* * *
81874800 TGATTTCGTGTAAGACTACGTCTGGGACATTGGCATCGACTTG-
1 TGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGA-TAGT
* * * *
81874843 AGATTTACGTGTAAGACAATGTTTGGGACATTGGCATC-ATA-T
1 TGA-TTACGTGTAAGACCACGTCTGGGACATTGGCATCGATAGT
* * *
81874885 ATGATTTCGTGTAAGACC-CTGTCTGAGACAGTGGCATCGATAGT
1 -TGATTACGTGTAAGACCAC-GTCTGGGACATTGGCATCGATAGT
* * *
81874929 TGATTACATGTAAGACCCCGTCTGGGACATAGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
81874965 TTTACGAGAT
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
42 28 0.29
43 37 0.38
44 32 0.33
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
TGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATAGT
Found at i:81877308 original size:12 final size:12
Alignment explanation
Indices: 81877291--81877315 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81877281 AGCAAAATAG
81877291 GCTTTTAGCGGC
1 GCTTTTAGCGGC
81877303 GCTTTTAGCGGC
1 GCTTTTAGCGGC
81877315 G
1 G
81877316 TTTGGACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.32
Consensus pattern (12 bp):
GCTTTTAGCGGC
Found at i:81877746 original size:155 final size:152
Alignment explanation
Indices: 81877405--81877834 Score: 486
Period size: 155 Copynumber: 2.7 Consensus size: 152
81877395 CGTTTGTCAA
* * * *
81877405 AAAAATGCCGCAAAAAATAAAGCATTAGCGGCGTTTATAAAAGAACGCCGCAATGGCTGACACAT
1 AAAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTT-TAAAA-AACGCCGCAATGG-TGACGCAT
* * * *
81877470 TAGCGGCGGTTGTCAAAAAATGCCGCAAAAGTGTTGAGCAAAACGGTGCCGTATGTTGGTGAGCT
63 TAGCGGCGGTT-TCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGC-
* *
81877535 CTTTTGAGGCATTAGCGGCGTTTTACC
126 CTATTGAGGCATTAGCCGCGTTTTACC
* *
81877562 AAAAACGCCGCTATAACTTCAAGCATTAGCGGCGTTTTACCAAAAACGCCGCAATAGGTGACGCA
1 AAAAACGCCGC-AAAAATTCAAGCATTAGCGGCGTTTTA--AAAAACGCCGCAAT-GGTGACGCA
* * * *
81877627 TTAGCGGCGGTTTCTACAAACGTCGCAAAAGTATTGAGCAAAACGGCGCCGTGTGTAGGTGAG-C
62 TTAGCGGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCC
*
81877691 TATTGAGGCATTAGCCGCGTTTCT-CG
127 TATTGAGGCATTAGCCGCGTTT-TACC
* * * * *
81877717 TAAAACGCCGCAAAAAGTTCAAGCATTAGCGGCGTTTTTGTAAAAGCGCCGCAATGGGTGAAGTA
1 AAAAACGCCGCAAAAA-TTCAAGCATTAGCGGCG-TTTT-AAAAAACGCCGCAAT-GGTGACGCA
* * *
81877782 TTAGCGGCGTTTTTCTAAAAACGCCGCAGAAGTGTTGAGCAAAACGGCACCGT
62 TTAGCGGCG-GTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGT
81877835 CCATTAGTTA
Statistics
Matches: 233, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
154 3 0.01
155 78 0.33
156 42 0.18
157 55 0.24
158 50 0.21
159 5 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (152 bp):
AAAAACGCCGCAAAAATTCAAGCATTAGCGGCGTTTTAAAAAACGCCGCAATGGTGACGCATTAG
CGGCGGTTTCTAAAAACGCCGCAAAAGTGTTGAGCAAAACGGCGCCGTATGTAGGTGAGCCTATT
GAGGCATTAGCCGCGTTTTACC
Found at i:81877767 original size:41 final size:40
Alignment explanation
Indices: 81877698--81877809 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
81877688 AGCTATTGAG
* * *
81877698 GCATTAGCCGCGTTTCTCGTAAAACGCCGCAAAAAGTTCAA
1 GCATTAGCGGCGTTT-TTGTAAAACGCCGCAAAAAGGTCAA
** *
81877739 GCATTAGCGGCGTTTTTGTAAAAGCGCCGC-AATGGGTGAA
1 GCATTAGCGGCGTTTTTGTAAAA-CGCCGCAAAAAGGTCAA
* *
81877779 GTATTAGCGGCGTTTTTCTAAAAACGCCGCA
1 GCATTAGCGGCGTTTTTGT-AAAACGCCGCA
81877810 GAAGTGTTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 36 0.60
41 24 0.40
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
GCATTAGCGGCGTTTTTGTAAAACGCCGCAAAAAGGTCAA
Found at i:81882494 original size:14 final size:13
Alignment explanation
Indices: 81882471--81882500 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
81882461 ATTACTATAA
81882471 TAATTATATGAAG
1 TAATTATATGAAG
81882484 TAATATATATGAAG
1 TAAT-TATATGAAG
81882498 TAA
1 TAA
81882501 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:81882879 original size:183 final size:183
Alignment explanation
Indices: 81882571--81882939 Score: 657
Period size: 183 Copynumber: 2.0 Consensus size: 183
81882561 GATATAGTTC
* *
81882571 CATGTGTTTATATTAGTGAATTAATGTTGTATATGTTTCAGTTACTACTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTACTTCCTGCTCCTCCTGCA
81882636 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTAATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTAATATAGATAAA
*
81882701 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGTTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
* * *
81882754 CATGTGTCTGTATTAGTGAATTAATGTTGTATGTATTTCAGTTACTGCTTCCTGCTCCTCCTGCA
1 CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTACTTCCTGCTCCTCCTGCA
* *
81882819 ACTATTGGTTCAACTGAAGCTGTCATTTAATCTTCGAATTAATATTTGGTACTGATATAGATAAA
66 ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTAATATAGATAAA
*
81882884 GTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
131 GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
81882937 CAT
1 CAT
81882940 CTGTTCTAGG
Statistics
Matches: 177, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 177 1.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (183 bp):
CATGTGTCTATATTAGTGAATTAATGTTGTATATATTTCAGTTACTACTTCCTGCTCCTCCTGCA
ACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAATTAATATTTGGTACTAATATAGATAAA
GTTTTCATATTTGCTTAAACTGAAATATATTTGGTGCTACTCTTATAATCTTA
Found at i:81884050 original size:275 final size:273
Alignment explanation
Indices: 81883430--81884105 Score: 1280
Period size: 275 Copynumber: 2.5 Consensus size: 273
81883420 CCAACCTTAT
* *
81883430 TTTAAATATTTTAAAGATTCAAATTATATAGGCTGGAAACCTGACGGGTTGCCGTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
81883495 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
81883560 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTACTTATAA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTACTTATAA
* *
81883625 AAATTAAACTACGATTCTTTTTTATATTATTATATTCAAATTACTATTTTTTTATATTATTAATG
196 AAATTAAACTACGATTCTTTTTTATATTATTATAATCAAATTACTATTTTTTTATATTAATAATG
81883690 TTTGATTTTAATA
261 TTTGATTTTAATA
81883703 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
*
81883768 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCATGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
81883833 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATGTACTTATA
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAAT-TACTTATA
81883898 AAAATTAAACTACGATTCTTTTTTTATATTATTATAATCAAATTACTATTTTTTTATATTAATAA
195 AAAATTAAACTACGATTC-TTTTTTATATTATTATAATCAAATTACTATTTTTTTATATTAATAA
81883963 TGTTTGATTTTAATA
259 TGTTTGATTTTAATA
*
81883978 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATAGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
81884043 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTC
81884106 TACGTTTTAT
Statistics
Matches: 394, Mismatches: 7, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
273 183 0.46
274 26 0.07
275 185 0.47
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (273 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATTTCCAATTACTTATAA
AAATTAAACTACGATTCTTTTTTATATTATTATAATCAAATTACTATTTTTTTATATTAATAATG
TTTGATTTTAATA
Found at i:81884516 original size:9 final size:9
Alignment explanation
Indices: 81884474--81884663 Score: 100
Period size: 9 Copynumber: 20.6 Consensus size: 9
81884464 TATTTGATAT
*
81884474 CATAATTTA
1 CATAACTTA
*
81884483 TATAACTTA
1 CATAACTTA
*
81884492 CCA-AACGTA
1 -CATAACTTA
81884501 CATAACTTA
1 CATAACTTA
*
81884510 TATAACTTA
1 CATAACTTA
* *
81884519 GATAA-ATA
1 CATAACTTA
*
81884527 TATAACTTA
1 CATAACTTA
81884536 CATAACTTA
1 CATAACTTA
81884545 CATAATACTTA
1 CAT-A-ACTTA
* *
81884556 AATATATTTTATA
1 CATA-A--CT-TA
*
81884569 TCATAATTTA
1 -CATAACTTA
81884579 CATAACTTA
1 CATAACTTA
81884588 CATAACTTA
1 CATAACTTA
*
81884597 TATAACTTA
1 CATAACTTA
* *
81884606 GATAA-ATA
1 CATAACTTA
* *
81884614 TATAATTTA
1 CATAACTTA
*
81884623 CATAA-ATA
1 CATAACTTA
* * *
81884631 TATATCATA
1 CATAACTTA
81884640 TCATAACTTA
1 -CATAACTTA
81884650 CATAACTTA
1 CATAACTTA
81884659 CATAA
1 CATAA
81884664 TACTTAAATA
Statistics
Matches: 142, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
8 19 0.13
9 94 0.66
10 13 0.09
11 9 0.06
12 1 0.01
13 3 0.02
14 3 0.02
ACGTcount: A:0.47, C:0.14, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:81884530 original size:17 final size:17
Alignment explanation
Indices: 81884508--81884663 Score: 93
Period size: 17 Copynumber: 8.9 Consensus size: 17
81884498 GTACATAACT
*
81884508 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
81884525 TATATAACTTACATAACT
1 TATATAACTTACATAA-A
* *
81884543 TACATAA--TACTTAAA
1 TATATAACTTACATAAA
** *
81884558 TATAT-TTTATATCATAATT
1 TATATAACT-TA-CATAA-A
* *
81884577 TACATAACTTACATAACT
1 TATATAACTTACATAA-A
*
81884595 TATATAACTTAGATAAA
1 TATATAACTTACATAAA
*
81884612 TATATAATTTACATAAA
1 TATATAACTTACATAAA
* * *
81884629 TATATATCATATCATAACT
1 TATATAACTTA-CATAA-A
*
81884648 TACATAACTTACATAA
1 TATATAACTTACATAA
81884664 TACTTAAATA
Statistics
Matches: 105, Mismatches: 25, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
15 4 0.04
16 6 0.06
17 40 0.38
18 40 0.38
19 14 0.13
20 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.01, T:0.39
Consensus pattern (17 bp):
TATATAACTTACATAAA
Found at i:81884645 original size:96 final size:96
Alignment explanation
Indices: 81884447--81884654 Score: 224
Period size: 96 Copynumber: 2.1 Consensus size: 96
81884437 AATAAAAACT
* *
81884447 TACATAATACATAAATATATTTGATATCATAATTTATATAACTTACCAAACGTACATAACTTATA
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCAAACGTACATAACTTAGA
* * * *
81884512 TAACTTAGATAAATATATAACTTACATAACT
66 TAACATAGATAAATACATAACATACATAACA
* * * *
81884543 TACATAATACTTAAATATATTTTATATCATAATTTACATAACTTA-CATAACTTATATAACTTAG
1 TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCA-AACGTACATAACTTAG
* * * *
81884607 ATAA-ATATATAATTTACATAA-ATATATATCA
65 ATAACATAGATAA-ATACATAACATACATAACA
81884638 TATCATAACTTACATAA
1 TA-CATAA--TACATAA
81884655 CTTACATAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
95 16 0.17
96 70 0.76
98 6 0.07
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.38
Consensus pattern (96 bp):
TACATAATACATAAATATATTTGATATCATAATTTACATAACTTACCAAACGTACATAACTTAGA
TAACATAGATAAATACATAACATACATAACA
Found at i:81890292 original size:21 final size:21
Alignment explanation
Indices: 81890267--81890325 Score: 100
Period size: 21 Copynumber: 2.8 Consensus size: 21
81890257 GAGCGGAGGT
* *
81890267 AGCAGAGAGGGAGGTAGCGGC
1 AGCAGCGAGGGAGGCAGCGGC
81890288 AGCAGCGAGGGAGGCAGCGGC
1 AGCAGCGAGGGAGGCAGCGGC
81890309 AGCAGCGAGGGAGGCAG
1 AGCAGCGAGGGAGGCAG
81890326 AGCATAGGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.53, T:0.02
Consensus pattern (21 bp):
AGCAGCGAGGGAGGCAGCGGC
Found at i:81890726 original size:43 final size:43
Alignment explanation
Indices: 81890679--81890773 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 43
81890669 TCTGCCAAAA
*
81890679 TTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGACCGTGACTT
1 TTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGACCGTGACTT
* ** ** *
81890722 TTAGCGGCGTTTTTTTCCCAAACGCCGCTAAAGGCCGTGACTT
1 TTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGACCGTGACTT
81890765 TTAGCGGCG
1 TTAGCGGCG
81890774 CTTTTTTTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGCAAAAACGCCGCTAAAGACCGTGACTT
Found at i:81890794 original size:44 final size:44
Alignment explanation
Indices: 81890698--81890867 Score: 249
Period size: 43 Copynumber: 4.0 Consensus size: 44
81890688 TTTGTGGGAA
* * *
81890698 AAACGCCGCTAAAGACCGTGACTTTTAGCGGCG-TTTTTTTCCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTTCC
*
81890741 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGCTTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTTCC
* *
81890785 AAACGCCGCTAAAGGCCACGACTTGTAGC-GCGC-TTTTTTT-C
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTTCC
*
81890826 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCTCTTTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTT
81890868 AATAAACGCC
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
41 28 0.24
42 10 0.09
43 43 0.37
44 35 0.30
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (44 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTTCC
Found at i:81890852 original size:85 final size:86
Alignment explanation
Indices: 81890698--81890867 Score: 254
Period size: 85 Copynumber: 2.0 Consensus size: 86
81890688 TTTGTGGGAA
** * *
81890698 AAACGCCGCTAAAGACCGTGACTTTTAGCGGCGTTTTTTTCCCAAACGCCGCTAAAGGCCGTGAC
1 AAACGCCGCTAAAGACCACGACTTGTAGCGGCGTTTTTTT-CCAAACGCCGCTAAAGGCCATGAC
81890763 TTTTAGCGGCGCTTTTTTTTCC
65 TTTTAGCGGCGCTTTTTTTTCC
*
81890785 AAACGCCGCTAAAGGCCACGACTTGTAGC-GCGCTTTTTTT-CAAACGCCGCTAAAGGCCATGAC
1 AAACGCCGCTAAAGACCACGACTTGTAGCGGCG-TTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
81890848 TTTTAGCGGCTCTTTTTTTT
65 TTTTAGCGGCGCTTTTTTTT
81890868 AATAAACGCC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
85 41 0.54
86 3 0.04
87 32 0.42
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCACGACTTGTAGCGGCGTTTTTTTCCAAACGCCGCTAAAGGCCATGACT
TTTAGCGGCGCTTTTTTTTCC
Found at i:81896251 original size:25 final size:24
Alignment explanation
Indices: 81896222--81896276 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 24
81896212 AAATATTAAA
81896222 TTTAAT-TTAATATTAAGATAATTAC
1 TTTAATATTAA-ATTAAGATAA-TAC
*
81896247 TTTAATATTAAATTAATATAATAC
1 TTTAATATTAAATTAAGATAATAC
81896271 TATTAA
1 T-TTAA
81896277 GATAAGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 4 0.15
25 19 0.70
26 4 0.15
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (24 bp):
TTTAATATTAAATTAAGATAATAC
Found at i:81896728 original size:9 final size:9
Alignment explanation
Indices: 81896716--81896740 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81896706 TCATATTTAT
81896716 TTTAATTAA
1 TTTAATTAA
81896725 TTTAATTAA
1 TTTAATTAA
81896734 TTTAATT
1 TTTAATT
81896741 TTACTTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTAATTAA
Found at i:81919069 original size:28 final size:28
Alignment explanation
Indices: 81919038--81919095 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
81919028 ATATGTTTCA
81919038 GATTGACATGTTTTAAATTTGAGCTTTT
1 GATTGACATGTTTTAAATTTGAGCTTTT
*
81919066 GATTGACATGTTTTGAATTTGAGCTTTT
1 GATTGACATGTTTTAAATTTGAGCTTTT
81919094 GA
1 GA
81919096 AGATTTTGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (28 bp):
GATTGACATGTTTTAAATTTGAGCTTTT
Found at i:81919987 original size:35 final size:35
Alignment explanation
Indices: 81919948--81920153 Score: 205
Period size: 35 Copynumber: 5.9 Consensus size: 35
81919938 AGGTAAGTAT
* *
81919948 ATGTGAGGTTATATTGAACTTGTATATTTGGCTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
81919983 ATGTGAGGTTATATTGAACTTGTGTATTTGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
** *
81920018 ATGTGAACTTATATTGAACTTGTATATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * ** *
81920053 ATGTGAGATTATATTGAATTTGTATATTCGGCCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * * * * *
81920088 ATGAGATGTTTTATTAAACTTGAACATTAGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
81920123 ATGTGATGATATATTGAACTTATATATTCGG
1 ATGTGAGGTTATATTGAACTTGTATATTCGG
81920154 CCATATGAAA
Statistics
Matches: 137, Mismatches: 34, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 137 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:81920108 original size:105 final size:105
Alignment explanation
Indices: 81919948--81920152 Score: 248
Period size: 105 Copynumber: 2.0 Consensus size: 105
81919938 AGGTAAGTAT
* * * * * *** *
81919948 ATGTGAGGTTATATTGAACTTGTATATTTGGCTACATGTGAGGTTATATTGAACTTGTGTATTTG
1 ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
* *
81920013 ATTACATGTGAACTTATATTGAACTTGTATATTCGATTAC
66 ATTACATGTGAACATATATTGAACTTATATATTCGATTAC
* * * *
81920053 ATGTGAGATTATATTGAATTTGTATATTCGGCCATATGAGATGTTTTATTAAACTTGAACATTAG
1 ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
* **
81920118 GTTACATGTGATGATATATTGAACTTATATATTCG
66 ATTACATGTGAACATATATTGAACTTATATATTCG
81920153 GCCATATGAA
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
105 82 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (105 bp):
ATGTGAGATTATATTGAACTTGTATATTCGGCCACATGAGAGGTTATATTAAACTTGAACATTAG
ATTACATGTGAACATATATTGAACTTATATATTCGATTAC
Found at i:81927544 original size:35 final size:35
Alignment explanation
Indices: 81927504--81927638 Score: 189
Period size: 35 Copynumber: 3.9 Consensus size: 35
81927494 AGGTAAGTAT
* * *
81927504 ATGTGAGGTTATATTGAACTTGTATATTTGGCTGC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* *
81927539 ATGTGAGGTTATATTGAACTTGTGTATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* *
81927574 ATGTGAGCTTATATTGAACTTGTATATTCAGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* *
81927609 ATGTGAGATTATATTGAATTTGTATATTCG
1 ATGTGAGGTTATATTGAACTTGTATATTCG
81927639 ACCATATGAG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 88 1.00
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:81927664 original size:70 final size:69
Alignment explanation
Indices: 81927502--81927717 Score: 193
Period size: 70 Copynumber: 3.1 Consensus size: 69
81927492 ATAGGTAAGT
* * * * * * *
81927502 ATATGTGAGGTTATATTGAACTTGTATATTTGGCTGCATGTGAGGTTATATTGAACTTGTGTATT
1 ATATGAGAGCTTATATTGAACTTGTATA-TTAGTTACATGTGAGATTATATTGAACTTGTATATT
**
81927567 CGATT
65 CGACC
* * *
81927572 ACATGTGAGCTTATATTGAACTTGTATATTCAGTTACATGTGAGATTATATTGAATTTGTATATT
1 ATATGAGAGCTTATATTGAACTTGTATATT-AGTTACATGTGAGATTATATTGAACTTGTATATT
81927637 CGACC
65 CGACC
* * * * * * *
81927642 ATATGAGATG-TTTTATTAAACTTGAACATTAGGTTACCTATGATGA-TATATTGAACTTATATA
1 ATATGAGA-GCTTATATTGAACTTGTATATTA-GTTACATGTGA-GATTATATTGAACTTGTATA
*
81927705 TTCGGCC
63 TTCGACC
81927712 ATATGA
1 ATATGA
81927718 AATAATATAA
Statistics
Matches: 121, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
69 3 0.02
70 115 0.95
71 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.42
Consensus pattern (69 bp):
ATATGAGAGCTTATATTGAACTTGTATATTAGTTACATGTGAGATTATATTGAACTTGTATATTC
GACC
Found at i:81932293 original size:6 final size:6
Alignment explanation
Indices: 81932282--81932313 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
81932272 TAGTTATGAT
*
81932282 TTTTTA TTTTTA TTTTTA TTTCTA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
81932314 ATCTTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:81935852 original size:26 final size:27
Alignment explanation
Indices: 81935768--81935909 Score: 182
Period size: 27 Copynumber: 5.3 Consensus size: 27
81935758 CCGAAGTAGA
* * *
81935768 TAAAATAACCGTAATGCCCCTATAGGA
1 TAAAATGACCGTAATGCCCCTGTAGGG
*
81935795 TAAAATGACCGTAATGCCTCTGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
*
81935822 TAAAATGACCGTAATGCCTC-GTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
**
81935848 TAAAACAACCGTAATGTCCCC-GTAGGG
1 TAAAATGACCGTAATG-CCCCTGTAGGG
*
81935875 T-AAATGACCGTAATGCCCCTGTATGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
81935901 TAAAATGAC
1 TAAAATGAC
81935910 GATTATGCCC
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
25 4 0.04
26 38 0.37
27 60 0.59
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
TAAAATGACCGTAATGCCCCTGTAGGG
Found at i:81935873 original size:53 final size:54
Alignment explanation
Indices: 81935768--81935905 Score: 174
Period size: 53 Copynumber: 2.6 Consensus size: 54
81935758 CCGAAGTAGA
* * * ** *
81935768 TAAAATAACCGTAATGCCCCTATAGGATAAAATGACCGTAATGCCTCTGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAACAACCGTAATGCCTCCGTAGGG
*
81935822 TAAAATGACCGTAATGCCTC-GTAGGGTAAAACAACCGTAATGTCC-CCGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAACAACCGTAATG-CCTCCGTAGGG
*
81935875 T-AAATGACCGTAATGCCCCTGTATGGTAAAA
1 TAAAATGACCGTAATGCCCCTGTAGGGTAAAA
81935906 TGACGATTAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
52 17 0.23
53 36 0.49
54 20 0.27
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (54 bp):
TAAAATGACCGTAATGCCCCTGTAGGGTAAAACAACCGTAATGCCTCCGTAGGG
Found at i:81939091 original size:50 final size:50
Alignment explanation
Indices: 81939026--81939213 Score: 279
Period size: 50 Copynumber: 3.8 Consensus size: 50
81939016 CTTCGATCCT
* *
81939026 GTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGATGGTTAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* *
81939076 GTGTGTGGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* * * *
81939126 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATTGTT-GGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* *
81939175 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
81939214 AGCTTTGGTG
Statistics
Matches: 126, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
49 40 0.32
50 86 0.68
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
Found at i:81939207 original size:99 final size:100
Alignment explanation
Indices: 81939026--81939213 Score: 279
Period size: 99 Copynumber: 1.9 Consensus size: 100
81939016 CTTCGATCCT
* * * * *
81939026 GTGTGTAGTACTAAGTGCATGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTGGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAG
*
81939091 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCAC
66 TGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
* * *
81939126 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAG
*
81939190 TGCAGGCTACTATGTGTACCAGAT
66 TGCAGGCTACTACGTGTACCAGAT
81939214 AGCTTTGGTG
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
99 40 0.51
100 38 0.49
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.31
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTACGTGTACCAGATGGTTAGGTCAC
Found at i:81942233 original size:33 final size:33
Alignment explanation
Indices: 81942195--81942261 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
81942185 TTCAGTGATA
81942195 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
1 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
81942228 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
1 GAATGGTTATAAGCATGATTAGTGATTGAGAAT
81942261 G
1 G
81942262 GGTTGATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.03, G:0.28, T:0.33
Consensus pattern (33 bp):
GAATGGTTATAAGCATGATTAGTGATTGAGAAT
Found at i:81945619 original size:101 final size:100
Alignment explanation
Indices: 81945491--81945671 Score: 299
Period size: 101 Copynumber: 1.8 Consensus size: 100
81945481 TGGTTTTAGG
* *
81945491 TCACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTATCAAATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCACATGTGTAGT-C
*
81945556 TAAGTGCATGCTACTATGCGTACCCGACAACTTCGA
65 TAAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
* * *
81945592 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGTCACGTGTGTAGTCT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCACATGTGTAGTCT
81945657 AAGTGCAAGCTACTA
66 AAGTGCAAGCTACTA
81945672 CGTGTATCGG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
100 16 0.22
101 58 0.78
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATAGTTAGGTCACATGTGTAGTCT
AAGTGCAAGCTACTATGCGTACCCGACAACTTCGA
Found at i:81945718 original size:49 final size:50
Alignment explanation
Indices: 81945440--81945720 Score: 269
Period size: 50 Copynumber: 5.6 Consensus size: 50
81945430 ATTGTGAGAA
* * * * *
81945440 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT--TGTTAGGT
* * * *
81945492 CACGTGTGTAGTACTAAGTGCAGGCTACTGCGTGTATCAAATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
* * * * * * *** * *
81945542 CGCATGTGTAGTACTAAGTGCATGCTACTATGCGTACCCGACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TTGTTAGGT
*
81945593 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
* * *
81945643 CACGTGTGTAGT-CTAAGTGCAAGCTACTACGTGTATCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
** **
81945691 TGCATGTGTAGTACTAAGTATAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
81945721 TGCGTACCAG
Statistics
Matches: 185, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
48 12 0.06
49 45 0.24
50 54 0.29
51 39 0.21
52 35 0.19
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTTAGGT
Found at i:81945763 original size:149 final size:152
Alignment explanation
Indices: 81945447--81945763 Score: 390
Period size: 149 Copynumber: 2.1 Consensus size: 152
81945437 GAACACATGT
* * * *
81945447 GTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAAGTG
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAGAT-GTGTTAGGTCACGTGTGTAGTACTAAGTG
* * * *
81945512 CAGGCTACTGCGTGTATCAAATAGTTAGGTCGCATGTGTAGTACTAAGTGCATGCTACTATGCGT
65 CAAGCTACTACGTGTATCAAATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGT
* *
81945577 ACCCGACAACTTCGATCACGTGT
130 ACCAGACAACTTCGATCACGTGG
* * *
81945600 GTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-TGTTAGGTCACGTGTGTAGT-CTAAGTGC
1 GTAGTAATATGTGCAGGCTACTACGTGTATAAGATGTGTTAGGTCACGTGTGTAGTACTAAGTGC
** * * *
81945663 AAGCTACTACGTGTATCGGATTGTT-GGTTGCATGTGTAGTACTAAGTATAGGCTACTATGCGTA
66 AAGCTACTACGTGTATCAAATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTA
* * *
81945727 CCAGATAGCTTCGATTACAG-GG
131 CCAGACAACTTCGATCAC-GTGG
*
81945749 GTGGTAATATGTGCA
1 GTAGTAATATGTGCA
81945764 TTCAACTGTG
Statistics
Matches: 141, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
149 62 0.44
150 29 0.21
151 19 0.13
153 31 0.22
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (152 bp):
GTAGTAATATGTGCAGGCTACTACGTGTATAAGATGTGTTAGGTCACGTGTGTAGTACTAAGTGC
AAGCTACTACGTGTATCAAATAGTTAGGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTA
CCAGACAACTTCGATCACGTGG
Found at i:81947514 original size:30 final size:32
Alignment explanation
Indices: 81947456--81947525 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
81947446 AGCCGCACGG
*
81947456 GCGTGTGTGACCATAGGATTCAACACACATGA
1 GCGTGTGTGACCACAGGATTCAACACACATGA
*
81947488 GCGTGTGTGACCACAGGATTCAACACACATGG
1 GCGTGTGTGACCACAGGATTCAACACACATGA
81947520 GCGTGT
1 GCGTGT
81947526 AACTCTCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (32 bp):
GCGTGTGTGACCACAGGATTCAACACACATGA
Found at i:81949754 original size:22 final size:22
Alignment explanation
Indices: 81949726--81949769 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
81949716 AAACCCTGTG
81949726 AGGATTCTGCAATTAATACAAA
1 AGGATTCTGCAATTAATACAAA
81949748 AGGATTCTGCAATTAATACAAA
1 AGGATTCTGCAATTAATACAAA
81949770 TCAGGCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (22 bp):
AGGATTCTGCAATTAATACAAA
Found at i:81953759 original size:46 final size:46
Alignment explanation
Indices: 81953706--81953842 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
81953696 TATATATACA
* * * *
81953706 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * * * *
81953752 CATCTCATACACGTTTTGCATTAGCCACTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
**
81953798 CATCTCATACACATTTCGCATTAGCCATTTGGCTTCGCCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATAT
81953843 ATACACTTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:81953887 original size:47 final size:47
Alignment explanation
Indices: 81953850--81954032 Score: 278
Period size: 47 Copynumber: 3.9 Consensus size: 47
81953840 TATATACACT
* ** *
81953850 TCCACGTTCATCACATTGGCCATTCTACCTTATCACATATATGCATG
1 TCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
*
81953897 TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
1 TCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
*
81953944 -CTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATCCATG
1 TC-CACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
* *
81953991 TTCACATTTATCACATTGGCCATTCGGCCTTATCACACATAT
1 TCCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
81954033 TCGGCCTTAT
Statistics
Matches: 125, Mismatches: 9, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.33
Consensus pattern (47 bp):
TCCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
Found at i:81953991 original size:94 final size:94
Alignment explanation
Indices: 81953856--81954032 Score: 309
Period size: 94 Copynumber: 1.9 Consensus size: 94
81953846 CACTTCCACG
* * *
81953856 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATT
81953921 CGGCCTTATCACACATATGCATGCTCACA
66 CGGCCTTATCACACATATGCATGCTCACA
* *
81953950 TTCATCACATTGGCCATTCGGCCTTATCACACATATCCATGTTCACATTTATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATT
81954015 CGGCCTTATCACACATAT
66 CGGCCTTATCACACATAT
81954033 TCGGCCTTAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 78 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (94 bp):
TTCATCACATTGGCCATTCGACCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATGCATGCTCACA
Found at i:81954026 original size:22 final size:22
Alignment explanation
Indices: 81953906--81954027 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
81953896 GTTCACATTC
81953906 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
81953928 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
81953952 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* ** * *
81953975 ATCACACATATCCATGTTC-ACATTT
1 ATCACA-TTGGCCA--TTCGGC-CTT
81954000 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
81954022 ATCACA
1 ATCACA
81954028 CATATTCGGC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 22 0.31
23 17 0.24
24 17 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:81954042 original size:66 final size:66
Alignment explanation
Indices: 81953965--81954098 Score: 223
Period size: 66 Copynumber: 2.0 Consensus size: 66
81953955 CACATTGGCC
*
81953965 ATTCGGCCTTATCACACATATCCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
81954030 T
66 T
* * * *
81954031 ATTCGGCCTTATCACACCTATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
81954096 T
66 T
81954097 AT
1 AT
81954099 GCATGCTCAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.34
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATCCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
T
Found at i:81954087 original size:47 final size:47
Alignment explanation
Indices: 81954031--81954120 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
81954021 TATCACACAT
* *
81954031 ATTCGGCCTTATCACACCTATGCATGTTCACATTCATCACATTGGTC
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGTC
*
81954078 ATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
81954121 AAAATCCTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGTC
Found at i:81956269 original size:23 final size:23
Alignment explanation
Indices: 81956220--81956269 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
81956210 GTATGTTTTG
* * *
81956220 TAAAGCTTTTGTGGTATATCTGG
1 TAAAGCTTGTGTGGCATATCTGA
81956243 TAAAGCTTGTGTGGCATAT-TGTA
1 TAAAGCTTGTGTGGCATATCTG-A
81956266 TAAA
1 TAAA
81956270 ACCTTTGTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (23 bp):
TAAAGCTTGTGTGGCATATCTGA
Found at i:81958033 original size:23 final size:23
Alignment explanation
Indices: 81957961--81958047 Score: 93
Period size: 23 Copynumber: 3.8 Consensus size: 23
81957951 ACACGTAATG
* *
81957961 TTCTCTAAAGCCTTTGAGGCATA
1 TTCTGTAAAGCCTTTGTGGCATA
* * * * *
81957984 TTCAGTAAAGCATGTGTTGTATA
1 TTCTGTAAAGCCTTTGTGGCATA
* *
81958007 TTCTGTAAAGTCTTTGTGGCATG
1 TTCTGTAAAGCCTTTGTGGCATA
81958030 TTCTGTAAAGCCTTTGTG
1 TTCTGTAAAGCCTTTGTG
81958048 ACGTATCTTG
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.40
Consensus pattern (23 bp):
TTCTGTAAAGCCTTTGTGGCATA
Found at i:81959813 original size:20 final size:20
Alignment explanation
Indices: 81959771--81959813 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
81959761 CATGGATGTA
*
81959771 TATGCTAGAAATTAGAAATT
1 TATGCTAGAAAATAGAAATT
*
81959791 TATGGTAGAAAAT-GAAATAT
1 TATGCTAGAAAATAGAAAT-T
81959811 TAT
1 TAT
81959814 TGAAAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.35
Consensus pattern (20 bp):
TATGCTAGAAAATAGAAATT
Found at i:81969960 original size:23 final size:23
Alignment explanation
Indices: 81969930--81970013 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
81969920 ACACATAATG
81969930 TTCTGTAAAGCCTTTGTGGCATA
1 TTCTGTAAAGCCTTTGTGGCATA
*
81969953 TT-TGGTAAAGCCTATGTGGCATA
1 TTCT-GTAAAGCCTTTGTGGCATA
** *
81969976 TTCTGTAAAGCCTTTGTGGTGTG
1 TTCTGTAAAGCCTTTGTGGCATA
*
81969999 TTCTATAAAGCCTTT
1 TTCTGTAAAGCCTTT
81970014 ATGATGTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
22 1 0.02
23 51 0.96
24 1 0.02
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (23 bp):
TTCTGTAAAGCCTTTGTGGCATA
Found at i:81973044 original size:53 final size:53
Alignment explanation
Indices: 81972972--81973228 Score: 291
Period size: 53 Copynumber: 4.8 Consensus size: 53
81972962 TTAATTTATT
* * *
81972972 ATATGATGTCATAACCCACCAATTACAGTCTTACACAATATAGTCTTCTTTCC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* * * **
81973025 ATATGATGTCATAACCCACCAATTACGGTCTTACACAATATGGTCTTCTTTTA
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* * * *** *
81973078 ATATAATGCCATAACCCATCAGTTACAGTATTACTTGATATGGTTTTCTTTCC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
* * *
81973131 ATTTGATGCCATAACCCACCAGTTAC-GATCTTACACGATATGGTCTTTTTTCC
1 ATATGATGCCATAACCCACCAGTTACAG-TCTTACACAATATGGTCTTCTTTCC
* * * * *
81973184 ATATGATGCCATGACCTACCAGTTATATTCTTAGACAATATGGTC
1 ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTC
81973229 CTTAAGTGCC
Statistics
Matches: 171, Mismatches: 31, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
52 1 0.01
53 170 0.99
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (53 bp):
ATATGATGCCATAACCCACCAGTTACAGTCTTACACAATATGGTCTTCTTTCC
Found at i:81973589 original size:39 final size:39
Alignment explanation
Indices: 81973535--81973612 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
81973525 CCAAATCTCG
81973535 AGTGTTACATCCTTCTTACATATGTAACTTAAAATTGTC
1 AGTGTTACATCCTTCTTACATATGTAACTTAAAATTGTC
81973574 AGTGTTACATCCTTCTTACATATGTAACTTAAAATTGTC
1 AGTGTTACATCCTTCTTACATATGTAACTTAAAATTGTC
81973613 TTTCTTTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (39 bp):
AGTGTTACATCCTTCTTACATATGTAACTTAAAATTGTC
Found at i:81975963 original size:19 final size:20
Alignment explanation
Indices: 81975926--81975968 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
81975916 ATAATGAGCG
81975926 TATATAACATATCATTCATT
1 TATATAACATATCATTCATT
81975946 TATATACATTCATATCATTCATT
1 TATATA-A--CATATCATTCATT
81975969 GTCATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 1 0.05
23 13 0.65
ACGTcount: A:0.37, C:0.16, G:0.00, T:0.47
Consensus pattern (20 bp):
TATATAACATATCATTCATT
Found at i:81976211 original size:43 final size:44
Alignment explanation
Indices: 81976143--81976360 Score: 225
Period size: 43 Copynumber: 5.1 Consensus size: 44
81976133 TAAGCTCGTA
* *
81976143 CGATGCCAAC-GTCCTAGACGTGGTCTTACATGTAATCAAATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * *
81976186 CGATGCC-ACTGTCCCAAACAGGGTCTTACATGAAACCAAATA-
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* *
81976228 CGATGCCGA-TGTCCCAGACATGGTCTTACACGTAAATCACAAT-T
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGT-AATCA-AATAT
* * * *
81976272 TGATGCCAAC-ATCCCAGACATGGTGTTACACGTAATCAAATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
* * * *
81976315 CGATGCC-ACTGTCCCAGACAAGGTCGTACATGAAATCACATAT
1 CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
81976358 CGA
1 CGA
81976361 AATCCTATGC
Statistics
Matches: 144, Mismatches: 23, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
42 34 0.24
43 79 0.55
44 31 0.22
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (44 bp):
CGATGCCAACTGTCCCAGACATGGTCTTACATGTAATCAAATAT
Found at i:81977837 original size:55 final size:57
Alignment explanation
Indices: 81977777--81977927 Score: 200
Period size: 55 Copynumber: 2.7 Consensus size: 57
81977767 TTATTGAAAC
**
81977777 AAGGCTTCCATTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAAAGATC-GTA-A
1 AAGGCTTCCATTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAAAGATCACCACA
* * *
81977832 AAGGCTTCCATTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAGCTCACCACA
1 AAGGCTTCCATTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAAAGATCACCACA
** *
81977889 AAGGCTTCCATTAACATTGATAGCTCA-AAAGGATTCCTT
1 AAGGCTTCCATTAACAGAGATAGC-CACAAAGGCTTCCTT
81977928 AGATTACGCC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
55 48 0.57
56 1 0.01
57 33 0.39
58 2 0.02
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (57 bp):
AAGGCTTCCATTAACAGAGATAGCCACAAAGGCTTCCTTTTAACAAAGATCACCACA
Found at i:81977840 original size:27 final size:29
Alignment explanation
Indices: 81977777--81977927 Score: 118
Period size: 28 Copynumber: 5.4 Consensus size: 29
81977767 TTATTGAAAC
* *
81977777 AAGGCTTCC-ATTAACAGAGATAGCCACA
1 AAGGCTTCCTTTTAACAAAGATAGCCACA
* *
81977805 AAGGCTTCCTTTTAACAAAGATCG-TA-A
1 AAGGCTTCCTTTTAACAAAGATAGCCACA
* * *
81977832 AAGGCTTCC-ATTAATAGAGATAGCCACA
1 AAGGCTTCCTTTTAACAAAGATAGCCACA
* *
81977860 AAGGCTTCCTTTTAACAGAGCTCA-CCACA
1 AAGGCTTCCTTTTAACAAAGAT-AGCCACA
* **
81977889 AAGGCTTCC-ATTAACATTGATAGCTCA-A
1 AAGGCTTCCTTTTAACAAAGATAGC-CACA
*
81977917 AAGGATTCCTT
1 AAGGCTTCCTT
81977928 AGATTACGCC
Statistics
Matches: 97, Mismatches: 18, Indels: 15
0.75 0.14 0.12
Matches are distributed among these distances:
26 10 0.10
27 12 0.12
28 38 0.39
29 36 0.37
30 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGGCTTCCTTTTAACAAAGATAGCCACA
Found at i:81977920 original size:28 final size:28
Alignment explanation
Indices: 81977777--81977904 Score: 145
Period size: 29 Copynumber: 4.6 Consensus size: 28
81977767 TTATTGAAAC
81977777 AAGGCTTCCATTAACAGAGATAGCCACA
1 AAGGCTTCCATTAACAGAGATAGCCACA
* * * *
81977805 AAGGCTTCCTTTTAACAAAGATCG-TA-A
1 AAGGCTTCC-ATTAACAGAGATAGCCACA
*
81977832 AAGGCTTCCATTAATAGAGATAGCCACA
1 AAGGCTTCCATTAACAGAGATAGCCACA
* *
81977860 AAGGCTTCCTTTTAACAGAGCTCA-CCACA
1 AAGGCTTCC-ATTAACAGAGAT-AGCCACA
81977889 AAGGCTTCCATTAACA
1 AAGGCTTCCATTAACA
81977905 TTGATAGCTC
Statistics
Matches: 82, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
26 10 0.12
27 11 0.13
28 26 0.32
29 34 0.41
30 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (28 bp):
AAGGCTTCCATTAACAGAGATAGCCACA
Found at i:81981414 original size:27 final size:27
Alignment explanation
Indices: 81981384--81981804 Score: 394
Period size: 27 Copynumber: 15.7 Consensus size: 27
81981374 TAATAAAGTG
*
81981384 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81981411 AAATTA-TCGAAATACCATCGATTTATG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
81981438 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81981465 AAATTATTGAAACAACCC-CGATTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
** * *
81981492 AAATTACCAAAATACCCTTGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81981518 AAATTATTGAAATACCC-CTAATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
81981545 AAATTA-TCGAAATACCCTCGATTATG--
1 AAATTACT-GAAATACCCTCGATT-TGTA
* *
81981571 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
81981598 AAATTA-TCGAAATACCCCCAATTTATG
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
81981625 AAATTACTGAAACACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
81981652 AAATTACCGAAACATCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
81981679 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
81981706 AAATTA-TCGAAATATCCTCTATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
81981733 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
81981760 AAATTACTGAAACACCCCCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
81981787 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
81981805 TGTAGTGTAA
Statistics
Matches: 319, Mismatches: 58, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 46 0.14
27 262 0.82
28 9 0.03
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:81981842 original size:81 final size:81
Alignment explanation
Indices: 81981438--81981849 Score: 225
Period size: 81 Copynumber: 5.1 Consensus size: 81
81981428 TCGATTTATG
* * * * * * * * *
81981438 AAATTACCGAAACACCCTCGATTTGTAAAATTATTGAAACAACCC-CGATTTATAAAATTAC-CA
1 AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAA-TACCCTCTATGTGTAAAATGACTC-
* * *
81981501 AAATACCCTTGAT-TGTG
64 AAATACCCCTGATGGGTA
* * * * * * * *
81981518 AAATTATTGAAATACCCCTAATTTGTAAAATTATCGAAATACCCTCGAT-TATGAAATTACTAAA
1 AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAATACCCTCTATGTGTAAAATGACTCAA
* **
81981582 ATA-CCCTCAATTTGTA
66 ATACCCCT-GATGGGTA
* * * * * * * *
81981598 AAATTA-TCGAAATACCCCCAATTTATGAAATTA-CTGAAACACCTTCGATTTGTAAAATTAC-C
1 AAATTACT-GAAACACCCCCAATTTGTAAAATTATC-GAAATACCCTCTATGTGTAAAATGACTC
* * * **
81981660 GAAACATCCTTGATTTGTA
64 -AAATACCCCTGATGGGTA
* *** * * * *
81981679 AAATTACTGAAATACCCTTGATTTGTAAAATTATCGAAATATCCTCTATTTGTAAAATTACTGAA
1 AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAATACCCTCTATGTGTAAAATGACTCAA
* **
81981744 ATACCCTTGATTTGTA
66 ATACCCCTGATGGGTA
*
81981760 AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAATACCCT-TGTAGTGTAAAATGAC-CA
1 AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAATACCCTCTAT-GTGTAAAATGACTCA
81981823 ACATACCCCT-ATAGGGTA
65 A-ATACCCCTGAT-GGGTA
*
81981841 AAATGACTG
1 AAATTACTG
81981850 TTTTGCCCTT
Statistics
Matches: 268, Mismatches: 49, Indels: 29
0.77 0.14 0.08
Matches are distributed among these distances:
78 3 0.01
79 23 0.09
80 85 0.32
81 152 0.57
82 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACTGAAACACCCCCAATTTGTAAAATTATCGAAATACCCTCTATGTGTAAAATGACTCAA
ATACCCCTGATGGGTA
Found at i:81983700 original size:28 final size:28
Alignment explanation
Indices: 81983660--81983741 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
81983650 AAGTCTACAT
*
81983660 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
* *
81983688 ACATTTATATGGCCCACTAGGCCTAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
*
81983716 ACATTCATATAGCCCA-TCAGGCCCAA
1 ACATTCATATGGCCCACT-AGGCCCAA
81983742 CTGCTTCCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 46 0.98
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.22
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:81987661 original size:48 final size:48
Alignment explanation
Indices: 81987436--81987680 Score: 162
Period size: 48 Copynumber: 5.1 Consensus size: 48
81987426 TAGGGATATG
* * * * * *
81987436 TGTGATCTCGTGTGAGACCATGTCTGGGAAATGGCATTGGCATATAAA
1 TGTGATCTCATGTAAGACCATATCTGGGACATGGCATTGGCATCTATA
* * *
81987484 TGTGATCCCATGTAAGACCAT-GCTTGGGACATGGCATTGGCATCAATA
1 TGTGATCTCATGTAAGACCATATC-TGGGACATGGCATTGGCATCTATA
* * * * * * * *
81987532 TGAGA-CATCGTGTAAGACCATAGCTAGG-CTATTG-ATT---TTTTTTA
1 TGTGATC-TCATGTAAGACCATATCTGGGAC-ATGGCATTGGCATCTATA
* * * *
81987576 TGCATGATCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TG--TGATCTCATGTAAGACCATATCTGGGACATGGCATTGGCATCTATA
* * *
81987626 TGTGATATCATGTAAGACCATATCTGGGATATGGCATGGGCATCCTACTA
1 TGTGATCTCATGTAAGACCATATCTGGGACATGGCATTGGCAT-CTA-TA
81987676 TGTGA
1 TGTGA
81987681 ATGTGATTTC
Statistics
Matches: 147, Mismatches: 36, Indels: 26
0.70 0.17 0.12
Matches are distributed among these distances:
44 5 0.03
46 20 0.14
47 11 0.07
48 95 0.65
49 4 0.03
50 12 0.08
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCTCATGTAAGACCATATCTGGGACATGGCATTGGCATCTATA
Found at i:81992046 original size:57 final size:57
Alignment explanation
Indices: 81991985--81992096 Score: 138
Period size: 57 Copynumber: 2.0 Consensus size: 57
81991975 CAGAGTTTTT
* * *
81991985 CACAA-GACATTCATTTAACTGAGA-TAGCCACAAATACATCCTTTTAACATAGATTGC
1 CACAATGAC-TTCATATAACAGAGATTAGCCACAAAGACATCC-TTTAACATAGATTGC
* * *
81992042 CACAATGGCTTCCTATAACAGAGATTAGCCACAAAGACTTCCTTTAACATAGATT
1 CACAATGACTTCATATAACAGAGATTAGCCACAAAGACATCCTTTAACATAGATT
81992097 ATTCTCAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 30 0.64
58 17 0.36
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (57 bp):
CACAATGACTTCATATAACAGAGATTAGCCACAAAGACATCCTTTAACATAGATTGC
Found at i:81992055 original size:29 final size:29
Alignment explanation
Indices: 81991988--81992145 Score: 124
Period size: 29 Copynumber: 5.3 Consensus size: 29
81991978 AGTTTTTCAC
*
81991988 AAGACATTCATTTAAC-TGAGA-TAGCCACA
1 AAGAC-TTCCTTTAACAT-AGATTAGCCACA
* *
81992017 AATACATCCTTTTAACATAGATT-GCCACA
1 AAGACTTCC-TTTAACATAGATTAGCCACA
* * * *
81992046 ATGGCTTCCTATAACAGAGATTAGCCACA
1 AAGACTTCCTTTAACATAGATTAGCCACA
* *
81992075 AAGACTTCCTTTAACATAGATTATTCTCAAAA
1 AAGACTTCCTTTAACATAGATTA-GC-C-ACA
* *
81992107 AAGGCTTCCATTTAACAGAGATTAGCCACA
1 AAGACTTCC-TTTAACATAGATTAGCCACA
*
81992137 AAGGCTTCC
1 AAGACTTCC
81992146 ATTGCAGACT
Statistics
Matches: 102, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
28 13 0.13
29 49 0.48
30 14 0.14
31 2 0.02
32 11 0.11
33 13 0.13
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (29 bp):
AAGACTTCCTTTAACATAGATTAGCCACA
Found at i:81992134 original size:62 final size:59
Alignment explanation
Indices: 81991996--81992145 Score: 171
Period size: 62 Copynumber: 2.5 Consensus size: 59
81991986 ACAAGACATT
* * * * *
81991996 CATTTAACTGAGA-TAGCCACAAATACATCCTTTTAACATAGATTGCCACAATGGCTTC
1 CATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGATTGCCAAAAAGGCTTC
* *
81992054 C-TATAACAGAGATTAGCCACAAAGACTTCC-TTTAACATAGATTATTCTCAAAAAAGGCTTC
1 CATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGA-T-TGC-C-AAAAAGGCTTC
*
81992115 CATTTAACAGAGATTAGCCACAAAGGCTTCC
1 CATTTAACAGAGATTAGCCACAAAGACTTCC
81992146 ATTGCAGACT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
57 20 0.26
58 17 0.22
59 2 0.03
60 1 0.01
61 10 0.13
62 27 0.35
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (59 bp):
CATTTAACAGAGATTAGCCACAAAGACTTCCTTTTAACATAGATTGCCAAAAAGGCTTC
Found at i:82003099 original size:21 final size:21
Alignment explanation
Indices: 82003073--82003128 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
82003063 TGTTGCCTTT
*
82003073 GGTGTCACTACACAACCATAG
1 GGTGTCACAACACAACCATAG
*
82003094 GGTGTCACAACACAGCCATAG
1 GGTGTCACAACACAACCATAG
* *
82003115 GATATCACAACACA
1 GGTGTCACAACACA
82003129 CCCCTGAAGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.16
Consensus pattern (21 bp):
GGTGTCACAACACAACCATAG
Found at i:82004436 original size:28 final size:28
Alignment explanation
Indices: 82004404--82004458 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
82004394 CAAAGGAGAA
82004404 GAAAACATGTTTAGTCAATCATTGATCT
1 GAAAACATGTTTAGTCAATCATTGATCT
82004432 GAAAACATGTTTAGTCAATCATTGATC
1 GAAAACATGTTTAGTCAATCATTGATC
82004459 CATACAGGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (28 bp):
GAAAACATGTTTAGTCAATCATTGATCT
Found at i:82006163 original size:10 final size:11
Alignment explanation
Indices: 82006137--82006161 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82006127 CATTAGCCTT
82006137 AAAACCTCTCA
1 AAAACCTCTCA
82006148 AAAACCTCTCA
1 AAAACCTCTCA
82006159 AAA
1 AAA
82006162 CCACTAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAACCTCTCA
Found at i:82010912 original size:18 final size:18
Alignment explanation
Indices: 82010872--82010913 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
82010862 CCATAATGCG
*
82010872 AGCCCATGTGGGCCCACA
1 AGCCCAGGTGGGCCCACA
*
82010890 CGCCCAGGT-GGCCCACGA
1 AGCCCAGGTGGGCCCAC-A
82010908 AGCCCA
1 AGCCCA
82010914 AAAATGGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.21, C:0.43, G:0.29, T:0.07
Consensus pattern (18 bp):
AGCCCAGGTGGGCCCACA
Found at i:82026549 original size:29 final size:29
Alignment explanation
Indices: 82026500--82026763 Score: 198
Period size: 29 Copynumber: 9.1 Consensus size: 29
82026490 TAAAGGCTAT
* *
82026500 CTTTAATAAAGA-TCGCCACAAAAGCTTC
1 CTTTAACAAAGATTAGCCACAAAAGCTTC
* *
82026528 CTTGAACAAAGATTA-CCTACAAAGGCTTC
1 CTTTAACAAAGATTAGCC-ACAAAAGCTTC
* * *
82026557 CTTTAATAGAGATTAGCCAC-AAAGAATTC
1 CTTTAACAAAGATTAGCCACAAAAG-CTTC
*
82026586 CTTTAACAAAGATTAGCCACAAAGGCTTC
1 CTTTAACAAAGATTAGCCACAAAAGCTTC
* * * * *
82026615 CTTTAATAGAGTTTAGCCACAAAGGTTTCC
1 CTTTAACAAAGATTAGCCACAAAAGCTT-C
* *
82026645 CTTTAACAGAGATTAGCCACAAAGGCTTC
1 CTTTAACAAAGATTAGCCACAAAAGCTTC
* *
82026674 CATTTAACAGAGA-TAGCCACAAAGGCTTC
1 C-TTTAACAAAGATTAGCCACAAAAGCTTC
* ** * *
82026703 CATTTAATAGGGA-TAGCCATAAAGGCTTC
1 C-TTTAACAAAGATTAGCCACAAAAGCTTC
* * * *
82026732 CAATTAATAGAGATT-GCCACAAAGGCTTC
1 C-TTTAACAAAGATTAGCCACAAAAGCTTC
82026761 CTT
1 CTT
82026764 AGATTGCATC
Statistics
Matches: 201, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
28 16 0.08
29 142 0.71
30 43 0.21
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (29 bp):
CTTTAACAAAGATTAGCCACAAAAGCTTC
Found at i:82026594 original size:58 final size:58
Alignment explanation
Indices: 82026479--82026763 Score: 296
Period size: 58 Copynumber: 4.9 Consensus size: 58
82026469 TCCTTTTAAC
* * * *
82026479 AGATATAGCCATAAAGGCTAT-CTTTAATAAAGA-TCGCCACAAA-AGCTTCCTTGAACAA
1 AGAT-TAGCCACAAAGGCT-TCCTTTAATAGAGATTAGCCACAAAGA-CTTCCTTTAACAA
*
82026537 AGATTA-CCTACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGAATTCCTTTAACAA
1 AGATTAGCC-ACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGACTTCCTTTAACAA
* ** *
82026595 AGATTAGCCACAAAGGCTTCCTTTAATAGAGTTTAGCCACAAAGGTTTCCCTTTAACAG
1 AGATTAGCCACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGACTT-CCTTTAACAA
* * * *
82026654 AGATTAGCCACAAAGGCTTCCATTTAACAGAGA-TAGCCACAAAGGCTTCCATTTAATAG
1 AGATTAGCCACAAAGGCTTCC-TTTAATAGAGATTAGCCACAAAGACTTCC-TTTAACAA
* * * *
82026713 GGA-TAGCCATAAAGGCTTCCAATTAATAGAGATT-GCCACAAAGGCTTCCTT
1 AGATTAGCCACAAAGGCTTCC-TTTAATAGAGATTAGCCACAAAGACTTCCTT
82026764 AGATTGCATC
Statistics
Matches: 201, Mismatches: 17, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
56 3 0.01
57 23 0.11
58 109 0.54
59 57 0.28
60 9 0.04
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (58 bp):
AGATTAGCCACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGACTTCCTTTAACAA
Found at i:82026667 original size:88 final size:87
Alignment explanation
Indices: 82026500--82026755 Score: 304
Period size: 88 Copynumber: 2.9 Consensus size: 87
82026490 TAAAGGCTAT
* * * * * *
82026500 CTTTAATAAAGATCGCCACAAAAGCTTCCTTGAACAAAGATTA-CCTACAAAGGCTT-CCTTTAA
1 CTTTAACAAAGATAGCCACAAAGGCTTCCTTTAATAGAGATTAGCC-ACAAAGGCTTCCCTTTAA
82026563 TAGAGATTAGCCACAAAGAATTC
65 TAGAGATTAGCCACAAAGAATTC
* *
82026586 CTTTAACAAAGATTAGCCACAAAGGCTTCCTTTAATAGAGTTTAGCCACAAAGGTTTCCCTTTAA
1 CTTTAACAAAGA-TAGCCACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGGCTTCCCTTTAA
* **
82026651 CAGAGATTAGCCACAAAGGCTTC
65 TAGAGATTAGCCACAAAGAATTC
* * * **
82026674 CATTTAACAGAGATAGCCACAAAGGCTTCCATTTAATAGGGA-TAGCCATAAAGGCTTCCAATTA
1 C-TTTAACAAAGATAGCCACAAAGGCTTCC-TTTAATAGAGATTAGCCACAAAGGCTTCCCTTTA
82026738 ATAGAGATT-GCCACAAAG
64 ATAGAGATTAGCCACAAAG
82026756 GCTTCCTTAG
Statistics
Matches: 146, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
86 11 0.08
87 43 0.29
88 73 0.50
89 19 0.13
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (87 bp):
CTTTAACAAAGATAGCCACAAAGGCTTCCTTTAATAGAGATTAGCCACAAAGGCTTCCCTTTAAT
AGAGATTAGCCACAAAGAATTC
Found at i:82028064 original size:21 final size:21
Alignment explanation
Indices: 82028032--82028078 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 21
82028022 AGGAACCAAA
82028032 GAAAACGGAATTAGATTGAGG
1 GAAAACGGAATTAGATTGAGG
82028053 GAAAA-GGCAATTAGATTGAGG
1 GAAAACGG-AATTAGATTGAGG
82028074 GAAAA
1 GAAAA
82028079 TGAAAGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.47, C:0.04, G:0.32, T:0.17
Consensus pattern (21 bp):
GAAAACGGAATTAGATTGAGG
Found at i:82029551 original size:54 final size:55
Alignment explanation
Indices: 82029475--82029578 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 55
82029465 ACACGGTCAC
* * *
82029475 ACACACGGGCGTGTGCTAAGCCATGTG-GCTAAGTCAATTTCGACCACGGGCTAG
1 ACACACGGGCATGTGCTAAGCCATGTGAACCAAGTCAATTTCGACCACGGGCTAG
* *
82029529 ACACATGGGCATGTGACT-AGCCATGTGAACCAAGTCAGTTTCGACCACGG
1 ACACACGGGCATGTG-CTAAGCCATGTGAACCAAGTCAATTTCGACCACGG
82029579 CCATGGCACA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
54 22 0.51
55 21 0.49
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (55 bp):
ACACACGGGCATGTGCTAAGCCATGTGAACCAAGTCAATTTCGACCACGGGCTAG
Found at i:82031391 original size:57 final size:58
Alignment explanation
Indices: 82031284--82031421 Score: 144
Period size: 57 Copynumber: 2.4 Consensus size: 58
82031274 ATTTAGACAA
*
82031284 CAGGA-TA-CCAGTCCAGGCTAAATCCTGTCTACAATATATACTCAATAGAGCTT-AGT
1 CAGGATTACCCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTGA-T
* * * ** *
82031340 CAGGATT-GCCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAA-AGAGCTTGAT
1 CAGGATTACCCAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAGAGCTTGAT
*
82031397 CTGGATTACCCA-TCCAGGCTAAATC
1 CAGGATTACCCAGTCCAGGCTAAATC
82031422 AAACCATAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
56 5 0.07
57 58 0.84
58 6 0.09
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (58 bp):
CAGGATTACCCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTGAT
Found at i:82035229 original size:40 final size:40
Alignment explanation
Indices: 82035159--82035376 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
82035149 AAGCCAGGTA
* * * *
82035159 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
82035198 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82035238 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82035278 CCTTCGGGGCTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82035318 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82035358 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82035377 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82043328 original size:40 final size:40
Alignment explanation
Indices: 82043258--82043475 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
82043248 AAGCCAGGTA
* * * *
82043258 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
82043297 CCTTCGGGACATAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82043337 CCTTCGGGACTTAGCCCGGATATGGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82043377 CATTCGAGG-CTTAACCCGGATATAGTAACTCACACAAATG
1 CCTTCG-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82043417 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
82043457 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82043476 TTATCATCCG
Statistics
Matches: 151, Mismatches: 23, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
39 15 0.10
40 134 0.89
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82049209 original size:15 final size:14
Alignment explanation
Indices: 82049163--82049205 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
82049153 TTAGTCTGTA
*
82049163 TTATA-TTTAAATT
1 TTATATTTTAATTT
*
82049176 TGATA-TTTAATTT
1 TTATATTTTAATTT
82049189 TTATATTTTAATTT
1 TTATATTTTAATTT
82049203 TTA
1 TTA
82049206 ATATAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (14 bp):
TTATATTTTAATTT
Found at i:82050163 original size:15 final size:15
Alignment explanation
Indices: 82050143--82050185 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
82050133 CATGCAAATT
82050143 AGAAAACAGAGAA-AA
1 AGAAAA-AGAGAAGAA
82050158 AG-AAAAGA-AAGAA
1 AGAAAAAGAGAAGAA
82050171 AGAAAAAGAGAAGAA
1 AGAAAAAGAGAAGAA
82050186 GCTCACTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.08
13 7 0.28
14 9 0.36
15 7 0.28
ACGTcount: A:0.74, C:0.02, G:0.23, T:0.00
Consensus pattern (15 bp):
AGAAAAAGAGAAGAA
Found at i:82053243 original size:42 final size:42
Alignment explanation
Indices: 82053196--82053327 Score: 196
Period size: 42 Copynumber: 3.2 Consensus size: 42
82053186 GCTCTCGATA
*
82053196 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG
** *
82053238 T-A-ATATATATCCGGGTTAAATCCTACAGGCTTTGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG
*
82053278 TAATATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG
*
82053320 TACTATAT
1 TAATATAT
82053328 TCGGACTTAA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 36 0.45
41 2 0.03
42 42 0.52
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGG
Found at i:82053244 original size:40 final size:40
Alignment explanation
Indices: 82053200--82053327 Score: 184
Period size: 40 Copynumber: 3.1 Consensus size: 40
82053190 TCGATATAAT
*
82053200 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
** *
82053240 ATATATATCCGGGTTAAATCCTACAGGCTTTGTGCTGGTAA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A
*
82053281 TATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 -ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
*
82053322 CTATAT
1 ATATAT
82053328 TCGGACTTAA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 41 0.53
41 2 0.03
42 35 0.45
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (40 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
Found at i:82053349 original size:82 final size:82
Alignment explanation
Indices: 82053196--82053362 Score: 223
Period size: 82 Copynumber: 2.0 Consensus size: 82
82053186 GCTCTCGATA
* * *
82053196 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATATCCGGGTTAAATCC
1 TAATATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCCGGCTTAAATCC
* *
82053261 TACAGGCTTTGTGCTGG
66 TACAGGCTTTGAGCTAG
*
82053278 TAATATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTACTATAT-T-CGGACTTAAAGT
1 TAATATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCCGG-CTTAAA--
*
82053341 TCC-GCAGGCTTTGAGCTAG
63 TCCTACAGGCTTTGAGCTAG
82053360 TAA
1 TAA
82053363 CTGGATTCGG
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
80 3 0.04
81 6 0.08
82 63 0.84
83 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (82 bp):
TAATATATATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATATATCCGGCTTAAATCC
TACAGGCTTTGAGCTAG
Found at i:82060905 original size:42 final size:42
Alignment explanation
Indices: 82060858--82060989 Score: 171
Period size: 42 Copynumber: 3.2 Consensus size: 42
82060848 ACTCTCGATA
**
82060858 TAATATATATATCCAAGTTAAATCCCGCAGGCTTCATGTTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGG
* * *
82060900 T-A-ATATATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGG
*
82060940 TAATATATATATCGGGGTTAAATCCCGCAGGCTT-AGTGTTGG
1 TAATATATATATCCGGGTTAAATCCCGCAGGCTTCA-TGTTGG
*
82060982 TACTATAT
1 TAATATAT
82060990 CCGGACTTAA
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 34 0.44
41 2 0.03
42 41 0.53
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (42 bp):
TAATATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGG
Found at i:82060906 original size:40 final size:40
Alignment explanation
Indices: 82060862--82060989 Score: 159
Period size: 40 Copynumber: 3.1 Consensus size: 40
82060852 TCGATATAAT
**
82060862 ATATATATCCAAGTTAAATCCCGCAGGCTTCATGTTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGGTA
* * *
82060902 ATATATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTAA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGGT-A
*
82060943 TATATATATCGGGGTTAAATCCCGCAGGCTT-AGTGTTGGTA
1 -ATATATATCCGGGTTAAATCCCGCAGGCTTCA-TGTTGGTA
*
82060984 CTATAT
1 ATATAT
82060990 CCGGACTTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
40 39 0.52
41 2 0.03
42 34 0.45
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (40 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCATGTTGGTA
Found at i:82061009 original size:82 final size:82
Alignment explanation
Indices: 82060858--82061013 Score: 203
Period size: 82 Copynumber: 1.9 Consensus size: 82
82060848 ACTCTCGATA
*
82060858 TAATATATATATCCAAGTTAAATCCCGCAGGCTTCATGTTGGTAATATATATCCGGGTTAAATCT
1 TAATATATATATCCAAGTTAAATCCCGCAGGCTTCATGTTGGTAATATATATCCGGCTTAAATCT
82060923 CGCAGGCTTCGTGCTGG
66 CGCAGGCTTCGTGCTGG
*** *
82060940 TAATATATATATCGGGGTTAAATCCCGCAGGCTT-AGTGTTGGT-A-CTATATCCGGACTTAATA
1 TAATATATATATCCAAGTTAAATCCCGCAGGCTTCA-TGTTGGTAATATATATCCGG-CTTAA-A
82061002 T-TCCGCAGGCTT
63 TCT-CGCAGGCTT
82061014 TATGCTAGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
80 9 0.14
81 7 0.11
82 49 0.75
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (82 bp):
TAATATATATATCCAAGTTAAATCCCGCAGGCTTCATGTTGGTAATATATATCCGGCTTAAATCT
CGCAGGCTTCGTGCTGG
Found at i:82063523 original size:47 final size:46
Alignment explanation
Indices: 82063454--82063576 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
82063444 TTATTTGTGT
*
82063454 GCTAGTGTAAGACAAGTCTGGGACACGGCATCAGCATTGAGACG-AGA
1 GCTAGTGTAAGACATGTCTGGGACA-GGCATCAGCATTGAGACGTA-A
* * * *
82063501 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTAA
1 GCTAGTGTAAGACATGTCTGGGACAGGCATCAGCATTGAGACGTAA
* * *
82063547 GCCAGTGTAAGACATGTTTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACAGGCAT
82063577 TGACTACGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
46 43 0.63
47 25 0.37
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACAGGCATCAGCATTGAGACGTAA
Found at i:82063554 original size:46 final size:47
Alignment explanation
Indices: 82063457--82063768 Score: 223
Period size: 49 Copynumber: 6.6 Consensus size: 47
82063447 TTTGTGTGCT
* * * * *
82063457 AGTGTAAGACAAGTCTGGGACACGGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGAC-TTGAGATGAGAGCC
*
82063504 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACTTGAGATG-AGAGCC
* * * * *
82063550 AGTGTAAGACATGTTTGGGACAT-GCAT-TGACTACGAGAT-A-TGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGACT-TGAGATGAGAGCC
* * * *
82063594 AGTGTAAGACGATGTCTGGGACATGGCATCGAAC-AGATATGTGAGAGCT
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGACTTGAGA--TGAGAGCC
* * * ** * *
82063643 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGACTTGAGAT-GAGAGCC
*
82063692 AGTGTAAGACCATGTCTAGGACATGGCATC-GACTT--GATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGACTTGAGAT-GA-GAGCC
*
82063739 AATGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC
82063769 AACATCATAC
Statistics
Matches: 213, Mismatches: 38, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
44 13 0.06
45 18 0.08
46 54 0.25
47 57 0.27
48 5 0.02
49 62 0.29
50 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGACTTGAGATGAGAGCC
Found at i:82063697 original size:98 final size:97
Alignment explanation
Indices: 82063586--82063765 Score: 258
Period size: 96 Copynumber: 1.8 Consensus size: 97
82063576 TTGACTACGA
* * * *
82063586 GATATGTCAGTGTAAGACGATGTCTGGGACATGGCATCGAACA-GATATGTGA-GAGCTAGTGTA
1 GATATGTCAGTGTAAGACCATGTCTAGGACATGGCATCG-ACATG--ATG-GATGAGCCAATGTA
82063649 AGACCATGTCTGGGACATGGCGTCGGCCTCGATTTC
62 AGACCATGTCTGGGACATGGCGTCGGCCTCGATTTC
*
82063685 GATA-GTCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATGGATGAGCCAATGTAAGAC
1 GATATGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACATGATGGATGAGCCAATGTAAGAC
82063749 CATGTCTGGGACATGGC
66 CATGTCTGGGACATGGC
82063766 ATCAACATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
95 2 0.03
96 33 0.45
97 2 0.03
98 33 0.45
99 4 0.05
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (97 bp):
GATATGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACATGATGGATGAGCCAATGTAAGAC
CATGTCTGGGACATGGCGTCGGCCTCGATTTC
Found at i:82069081 original size:180 final size:180
Alignment explanation
Indices: 82068773--82069131 Score: 454
Period size: 180 Copynumber: 2.0 Consensus size: 180
82068763 CTGGAGCTAC
* *
82068773 GGAACTCCAAATTAAGATCCGTTAATTTCCCCAGAAAATAGACTCACATATATTCTTACCATAAA
1 GGAACTCCAAATTAAGAACCGCTAATTTCCCCAGAAAATAGACTCACATATATTCTTACCATAAA
* ** **
82068838 ATTTTAAAATTTTTTTTCTTAGACAATTAGTACAGTTTATTCATTAAATTTACCCCAATTTCACT
66 ATTTTAAAATTTTTTGTCTTAGACAATTAGTACAGTTTATTCATTAAAGATAAACCAATTTCACT
* * * *
82068903 ATCCA-ATAGTTCCGACCTCTCTTTACTGAAAATTATTTATCTAATGGTAA
131 AT-CAGACAATTCCGACCTCTCTTCACTAAAAATTATTTATCTAATGGTAA
* * * ** *
82068953 GGAACTCCAAATTAAGAACTGCTAATTTTCCCAGAAACTAGACTCATTTATATTTTTACCATAAA
1 GGAACTCCAAATTAAGAACCGCTAATTTCCCCAGAAAATAGACTCACATATATTCTTACCATAAA
**
82069018 ATTTTCAAAATTTTTTGT-TTAG-CTAATTAGTACAGTTTATTCATTAAAGATAAACTTATTTCA
66 ATTTT-AAAATTTTTTGTCTTAGAC-AATTAGTACAGTTTATTCATTAAAGATAAACCAATTTCA
* * * * *
82069081 CTGTCAGACAATTCTGATCTTTCTTCACTAAAAATTATTTATCTCATGGTA
129 CTATCAGACAATTCCGACCTCTCTTCACTAAAAATTATTTATCTAATGGTA
82069132 CAAATCTCGG
Statistics
Matches: 152, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
179 3 0.02
180 138 0.91
181 11 0.07
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (180 bp):
GGAACTCCAAATTAAGAACCGCTAATTTCCCCAGAAAATAGACTCACATATATTCTTACCATAAA
ATTTTAAAATTTTTTGTCTTAGACAATTAGTACAGTTTATTCATTAAAGATAAACCAATTTCACT
ATCAGACAATTCCGACCTCTCTTCACTAAAAATTATTTATCTAATGGTAA
Found at i:82069900 original size:101 final size:100
Alignment explanation
Indices: 82069701--82070087 Score: 311
Period size: 101 Copynumber: 3.9 Consensus size: 100
82069691 CTGGTACGCA
* * * * * **
82069701 TAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATTTGGTACACGTAGTAGCTTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATTGGGTACACATAGTAGCCTAAACTT
* * *
82069766 AGTACTACACACGTGACTTATCCACCTGATACACG
66 AGTACTACACACGCGACCTATCAACCTGATACACG
* * * *
82069801 TAGTAGACTGCACTTAGTACTACACACGTGATCGAAGTTAA-TGGGTCCACATAGTAGCCTAAAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAATTGGGTACACATAGTAGCCTAAAC
* *
82069865 TTAGTACTACACATGCGACCTATCAATCC-GGTACACG
64 TTAGTACTACACACGCGACCTATCAA-CCTGATACACG
* * * * ** **
82069902 TACTAGCCTGCACTTAGTACTACACACATGACCTAA-CCATCT-GATACATGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAAT-TGGGTACACATAGTAGCCTAAAC
* ** * * * * *
82069965 TTAGTACTACACACGTGATCGAAACAA-TTGGGTACGCA
64 TTAGTACTACACACGCGA-CCTATCAACCT-GATACACG
* * * *
82070003 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCT-GGTACACGTAGTAGCCTACAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAAT-TGGGTACACATAGTAGCCTAAAC
*
82070066 TTAGTACTACACACGTGACCTA
64 TTAGTACTACACACGCGACCTA
82070088 AAACTGTCTT
Statistics
Matches: 232, Mismatches: 46, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
99 1 0.00
100 63 0.27
101 163 0.70
102 5 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATTGGGTACACATAGTAGCCTAAACTT
AGTACTACACACGCGACCTATCAACCTGATACACG
Found at i:82069973 original size:151 final size:151
Alignment explanation
Indices: 82069693--82070088 Score: 587
Period size: 151 Copynumber: 2.6 Consensus size: 151
82069683 GAAGCTCTCT
* * * *
82069693 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATTTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
82069758 TTGCACTTAGTACTACACACGTGACTTATCCACCTGATACACGTAGTAGACTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCACCTGATACACGTAGTAGACTGCACTTAGTACTA
**
82069823 CACACGTGATCGAAGTTAA-TG
131 CACACGTGATCGAA-ACAATTG
* ** * *
82069844 GGTCCACATAGTAGCCTAAACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTACTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
82069909 CTGCACTTAGTACTACACACATGACCTAACCATCTGATACATGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACCTAACCACCTGATACACGTAGTAGACTGCACTTAGTACTA
82069974 CACACGTGATCGAAACAATTG
131 CACACGTGATCGAAACAATTG
* *
82069995 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
82070060 CTACACTTAGTACTACACACGTGACCTAA
66 CTGCACTTAGTACTACACACGTGACCTAA
82070089 AACTGTCTTA
Statistics
Matches: 217, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
150 2 0.01
151 215 0.99
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (151 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACCTAACCACCTGATACACGTAGTAGACTGCACTTAGTACTA
CACACGTGATCGAAACAATTG
Found at i:82070088 original size:50 final size:50
Alignment explanation
Indices: 82069690--82070088 Score: 424
Period size: 50 Copynumber: 7.9 Consensus size: 50
82069680 ACTGAAGCTC
* * * *
82069690 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * *
82069740 TTTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACTTATCCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * *
82069790 CCTGATACACGTAGTAGACTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAA
* * * ** * * *
82069842 T-GGGTCCACATAGTAGCCTAAACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
82069891 TCCGGTACACGTACTAGCCTGCACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * **
82069941 TCTGATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAA
* * * *
82069992 T-TGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
*
82070042 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
82070089 AACTGTCTTA
Statistics
Matches: 279, Mismatches: 64, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
49 3 0.01
50 202 0.72
51 73 0.26
52 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:82077513 original size:50 final size:50
Alignment explanation
Indices: 82077454--82077685 Score: 313
Period size: 50 Copynumber: 4.6 Consensus size: 50
82077444 CGGGTACGCA
**
82077454 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATTAATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
** *
82077504 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
* *
82077554 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
* * * **
82077604 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AACTGTCTTAAACAAA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA---TCTGATACACG
*
82077656 TAGTAGCCTGCACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
82077686 TTCTCACAAT
Statistics
Matches: 160, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
49 2 0.01
50 124 0.77
52 34 0.21
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
Found at i:82081943 original size:46 final size:46
Alignment explanation
Indices: 82081832--82082145 Score: 223
Period size: 46 Copynumber: 6.6 Consensus size: 46
82081822 ATTTGTGTGC
* * ** * **
82081832 TAGTGTAAGACATGTCTGGGACGTGGCACCAGAATTGAGA-CAAGAGT
1 TAGTGTAAGACATGTCTGGGACATGGCATC-GGCTCGAGATGTA-AGT
*
82081879 TAGTGTAAGACATATCTGGGACAT-GCATCGGCCTCGAGATGTAAGT
1 TAGTGTAAGACATGTCTGGGACATGGCATCGG-CTCGAGATGTAAGT
82081925 TAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGT--GT
1 TAGTGTAAGACATGTCTGGGACATGGCATCGGCT-CGAGATGTAAGT
* * * * *
82081969 CAGTGTAAGACTATGTCTGGGACATGGCATCGGCAC-ATATATAGGT
1 TAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCTCGAGATGTAAGT
* * *
82082015 GTCAGTGTAAGACCATGTTTGGGACATGGCATCGG-TACGGATATGTGAGAGC
1 -T-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCT-C-GAGATGT-A-AGT
* *
82082067 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC-AG-TTTCGATAGT
1 TAGTGTAAGA-CATGTCTGGGACATGGCATCGG-CTCGAGATGT--A-AGT
* *
82082116 CAGTGTAAGACCATATCTGGGACATGGCAT
1 TAGTGTAAGA-CATGTCTGGGACATGGCAT
82082146 TGGCATCATA
Statistics
Matches: 221, Mismatches: 28, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
44 16 0.07
45 17 0.08
46 60 0.27
47 23 0.10
48 32 0.14
49 33 0.15
50 35 0.16
51 3 0.01
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGATGTAAGT
Found at i:82082026 original size:48 final size:47
Alignment explanation
Indices: 82081926--82082155 Score: 204
Period size: 48 Copynumber: 4.8 Consensus size: 47
82081916 GATGTAAGTT
* *
82081926 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-GAGAT-GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATATATGGTGTC
*
82081970 AGTGTAAGACTATGTCTGGGACATGGCATCGGCACATATATAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAT-GGTGTC
* * * *
82082018 AGTGTAAGACCATGTTTGGGACATGGCATCGGTACGGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--ATATATG-GTGTC
* * *
82082067 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-C-TCAGTTTCGATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-A-TAT-GGT-GTC
* *
82082117 AGTGTAAGACCATATCTGGGACATGGCATTGGCATCATA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CATA
82082156 CCTTATGTTT
Statistics
Matches: 152, Mismatches: 17, Indels: 27
0.78 0.09 0.14
Matches are distributed among these distances:
44 9 0.06
45 15 0.10
46 12 0.08
47 1 0.01
48 39 0.26
49 35 0.23
50 38 0.25
51 2 0.01
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATATATGGTGTC
Found at i:82087307 original size:13 final size:13
Alignment explanation
Indices: 82087289--82087313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82087279 TAATGGTATA
82087289 TTGAATCCATGAT
1 TTGAATCCATGAT
82087302 TTGAATCCATGA
1 TTGAATCCATGA
82087314 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:82089042 original size:47 final size:47
Alignment explanation
Indices: 82088910--82089605 Score: 1104
Period size: 47 Copynumber: 14.6 Consensus size: 47
82088900 TTATTCATTG
* *
82088910 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
82088957 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
82089006 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089053 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089102 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089151 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
82089198 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089245 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
82089294 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089343 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089390 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
82089437 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
82089484 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * * *
82089531 GAATGTGAAAGTGTATATATGTGACAGGGTCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
82089578 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
82089606 TCCCGAAGGG
Statistics
Matches: 616, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 385 0.62
49 231 0.38
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:82089079 original size:96 final size:94
Alignment explanation
Indices: 82088910--82089605 Score: 1104
Period size: 96 Copynumber: 7.3 Consensus size: 94
82088900 TTATTCATTG
* *
82088910 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
82088975 ATATGTGATAAGGCCTAATGGCCGATGTGAT
64 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
82089006 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
82089071 ATATGTGATAAGGCCTAATGGCCAATGTGAT
64 ATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089102 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
82089167 ATATGTGATAAGGCCTAATAGCCGATGTGAT
64 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
82089198 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
82089263 ATATGTGATAAGGCCTAATGGCCAATGTGAT
64 ATATGTGATAAGGCCTAATGGCCGATGTGAT
82089294 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
82089359 ATATGTGATAAGGCCTAATAGCCGATGTGAT
64 ATATGTGATAAGGCCTAATGGCCGATGTGAT
*
82089390 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
82089455 ATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATGTGATAAGGCCTAATGGCCGATGTGAT
82089484 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
82089549 ATGTGACAGGGTCGAGTGGCCAACGTGAT
66 ATGTGATAAGGCCTAATGGCCGATGTGAT
* *
82089578 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
82089606 TCCCGAAGGG
Statistics
Matches: 565, Mismatches: 29, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
94 235 0.42
96 241 0.43
98 89 0.16
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:82119995 original size:12 final size:12
Alignment explanation
Indices: 82119978--82120006 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
82119968 ACAGGTTTGG
82119978 CACGGCCTAGCA
1 CACGGCCTAGCA
82119990 CACGGCCTAGCA
1 CACGGCCTAGCA
82120002 CACGG
1 CACGG
82120007 GCGTGTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.28, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:82128247 original size:12 final size:12
Alignment explanation
Indices: 82128228--82128258 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
82128218 ATTAGAAAAC
82128228 AAAG-AAAAAGA
1 AAAGAAAAAAGA
82128239 AAAGAAAAAAGA
1 AAAGAAAAAAGA
82128251 AAAGAAAA
1 AAAGAAAA
82128259 GGAGAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAGAAAAAAGA
Done.