Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 243 of 362
Found at i:82129388 original size:43 final size:42
Alignment explanation
Indices: 82129335--82129421 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 42
82129325 TATGTGATTG
*
82129335 ATATGGAAATGGCACAGATGATAAATGAATATGAGATGAGAAA
1 ATATGGAAATGGCAAAGATGATAAATGAATATGAGATGA-AAA
* * *
82129378 ATATTGAAATGGCAAATATGATAAATGATTATGAGATGAAAA
1 ATATGGAAATGGCAAAGATGATAAATGAATATGAGATGAAAA
82129420 AT
1 AT
82129422 GAAATATGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.12
43 35 0.88
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.25
Consensus pattern (42 bp):
ATATGGAAATGGCAAAGATGATAAATGAATATGAGATGAAAA
Found at i:82131614 original size:47 final size:46
Alignment explanation
Indices: 82131512--82131638 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 46
82131502 ATTTGTACGC
* * *
82131512 TAGTATAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGACGAGAGA
* * *
82131560 TATTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GATAGA
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCATC--CAGACGAGAGA
*
82131607 TAGTGTAAGACGTGTCTAGGG-CATGCATCGGC
1 TAGTGTAAGACATGTCT-GGGACATGCATCGGC
82131639 TAAGAGTTGT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
46 10 0.15
47 43 0.63
48 15 0.22
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGACGAGAGA
Found at i:82138082 original size:39 final size:39
Alignment explanation
Indices: 82138011--82138090 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 39
82138001 AACCGGTGGC
* *
82138011 GGTAGTAGTAGATGATGATGCAGAGGCCGTTCCCGAGCA
1 GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA
* *
82138050 GGTAGTAGCAGATGATGATGTAGCA-GCGGTTCCCGAACA
1 GGTAGTAGCAGATGATGATGCAG-AGGCCGTTCCCGAACA
82138089 GG
1 GG
82138091 AGGATGATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
39 35 0.97
40 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.36, T:0.20
Consensus pattern (39 bp):
GGTAGTAGCAGATGATGATGCAGAGGCCGTTCCCGAACA
Found at i:82138268 original size:55 final size:55
Alignment explanation
Indices: 82138183--82138293 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
82138173 ATTTTTCATA
*
82138183 TATTCTACTTAGATGCTTGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
1 TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
*
82138238 TATTCTACTTAGATGCTCGGCTGCATGACATTATATTAAGGGGCTTTTAAAACTT
1 TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
82138293 T
1 T
82138294 TCTTCTTTTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (55 bp):
TATTCTACTTAGATGCTCGGCTGCAAGACATTATATTAAGGGGCTTTTAAAACTT
Found at i:82140148 original size:38 final size:38
Alignment explanation
Indices: 82140097--82140171 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
82140087 TTTAATGCAC
82140097 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
1 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
*
82140135 AAAATCAATGCTTTCAATGGCTCCAAATGTCTTCCAA
1 AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAA
82140172 CTGATTAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.31
Consensus pattern (38 bp):
AAAATCAATGCTTTCAATGGCTCAAAATGTCTTCCAAT
Found at i:82148168 original size:33 final size:33
Alignment explanation
Indices: 82148126--82148188 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
82148116 AGCGGGAGCA
*
82148126 AGCGCATTACTTTCAACATCGTTAGTTATTAGC
1 AGCGCATTACTTTCAACATCGTCAGTTATTAGC
82148159 AGCGCATTACTTTCAACATCGTCAGTTATT
1 AGCGCATTACTTTCAACATCGTCAGTTATT
82148189 TCTCGATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (33 bp):
AGCGCATTACTTTCAACATCGTCAGTTATTAGC
Found at i:82172917 original size:29 final size:29
Alignment explanation
Indices: 82172848--82172920 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
82172838 GGTCGTGTAA
* *
82172848 GCCACACAGACGTGTTCTAGGTCGTATGG
1 GCCAGACAGGCGTGTTCTAGGTCGTATGG
* *
82172877 GCCAGACGGGCGTGTTCTAGG-CTGTGTGG
1 GCCAGACAGGCGTGTTCTAGGTC-GTATGG
**
82172906 GCCAGGTAGGCGTGT
1 GCCAGACAGGCGTGT
82172921 GGGCCACATG
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.03
29 35 0.97
ACGTcount: A:0.15, C:0.22, G:0.40, T:0.23
Consensus pattern (29 bp):
GCCAGACAGGCGTGTTCTAGGTCGTATGG
Found at i:82172934 original size:17 final size:17
Alignment explanation
Indices: 82172894--82172938 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
82172884 GGGCGTGTTC
**
82172894 TAGGCTGTGTGGGCCAGG
1 TAGGC-GTGTGGGCCACA
82172912 TAGGCGTGTGGGCCACA
1 TAGGCGTGTGGGCCACA
*
82172929 TGGGCGTGTG
1 TAGGCGTGTG
82172939 AGCCCATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 19 0.79
18 5 0.21
ACGTcount: A:0.11, C:0.18, G:0.49, T:0.22
Consensus pattern (17 bp):
TAGGCGTGTGGGCCACA
Found at i:82175435 original size:26 final size:25
Alignment explanation
Indices: 82175395--82175472 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
82175385 AACATGCCAG
* *
82175395 AAAAAGAAAGTTTTTGTGGCATATCT
1 AAAAAGGAAGCTTTTGTGG-ATATCT
*
82175421 AAAAAGGAAGCTTTTGTGGAGTATGT
1 AAAAAGGAAGCTTTTGTGGA-TATCT
* *
82175447 AAAAAGGAAACCTTTGTGAGATATCT
1 AAAAAGGAAGCTTTTGTG-GATATCT
82175473 TGAATGGAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.02
26 41 0.93
27 2 0.05
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (25 bp):
AAAAAGGAAGCTTTTGTGGATATCT
Found at i:82176210 original size:44 final size:44
Alignment explanation
Indices: 82176146--82176234 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
82176136 TAGGGTAAGG
* *
82176146 TATGGAAATGAGCGTAAGTATAAGAATGACAATTGAGGAAGTAA
1 TATGGAAATGAACGTAAGTATAAGAATGAAAATTGAGGAAGTAA
*
82176190 TATGGAAATGAACGTGAGTATAAGAATGAAAATTGAGGAAGTAA
1 TATGGAAATGAACGTAAGTATAAGAATGAAAATTGAGGAAGTAA
82176234 T
1 T
82176235 CGTTAAAGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.46, C:0.03, G:0.27, T:0.24
Consensus pattern (44 bp):
TATGGAAATGAACGTAAGTATAAGAATGAAAATTGAGGAAGTAA
Found at i:82176232 original size:23 final size:23
Alignment explanation
Indices: 82176161--82176232 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
82176151 AAATGAGCGT
*
82176161 AAGTATAAGAATGACAATTGAGG
1 AAGTATAAGAATGAAAATTGAGG
* *
82176184 AAG--TAA-TATGGAAA-TGAACGTG
1 AAGTATAAGAATGAAAATTG-A-G-G
82176206 -AGTATAAGAATGAAAATTGAGG
1 AAGTATAAGAATGAAAATTGAGG
82176228 AAGTA
1 AAGTA
82176233 ATCGTTAAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 16
0.63 0.09 0.28
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 6 0.17
22 2 0.06
23 11 0.31
24 7 0.19
25 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.22
Consensus pattern (23 bp):
AAGTATAAGAATGAAAATTGAGG
Found at i:82195856 original size:39 final size:39
Alignment explanation
Indices: 82195802--82195978 Score: 282
Period size: 39 Copynumber: 4.5 Consensus size: 39
82195792 TCATAATTGA
* * * *
82195802 ATGTGCTGAAATTATATCTGGACTTCAGGTCCACAGGTT
1 ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
82195841 ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
1 ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
*
82195880 ATGTGCTGGAATTATATCCGGACTTCAAGTCCGCAGGCT
1 ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
* *
82195919 ATGTGCTGGAATTTTATCCAGACTTCAGGTCCGCAGGCT
1 ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
*
82195958 ATGAGCTGGAATTATATCCGG
1 ATGTGCTGGAATTATATCCGG
82195979 GCTTAAATTC
Statistics
Matches: 127, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 127 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
ATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGCT
Found at i:82199496 original size:24 final size:24
Alignment explanation
Indices: 82199469--82199516 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
82199459 TTGAAAGAAG
82199469 TTAGCTTTTTGGTACACATGGTAT
1 TTAGCTTTTTGGTACACATGGTAT
*
82199493 TTAGCTTTTTGGTACACGTGGTAT
1 TTAGCTTTTTGGTACACATGGTAT
82199517 CTGCATCGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (24 bp):
TTAGCTTTTTGGTACACATGGTAT
Found at i:82203663 original size:39 final size:39
Alignment explanation
Indices: 82203609--82203745 Score: 229
Period size: 39 Copynumber: 3.5 Consensus size: 39
82203599 ATCATAATTG
* *
82203609 TATGTGCTGAAATTATATCTGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
82203648 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
82203687 TATGTGCTGGAATTTTATCCGAACTTCAGGTCCGCAGGC
1 TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
*
82203726 TATGAGCTGGAATTATATCC
1 TATGTGCTGGAATTATATCC
82203746 AGGCTTAAAT
Statistics
Matches: 92, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (39 bp):
TATGTGCTGGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:82216794 original size:13 final size:13
Alignment explanation
Indices: 82216772--82216804 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82216762 AAGGGTTTGT
82216772 TTAT-TAAACTAA
1 TTATCTAAACTAA
82216784 TTATCTAAACTAA
1 TTATCTAAACTAA
*
82216797 TTAACTAA
1 TTATCTAA
82216805 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:82224774 original size:13 final size:13
Alignment explanation
Indices: 82224752--82224784 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82224742 AAAGGTTTGT
82224752 TTAT-TAAACTAA
1 TTATCTAAACTAA
82224764 TTATCTAAACTAA
1 TTATCTAAACTAA
*
82224777 TTAACTAA
1 TTATCTAA
82224785 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:82228708 original size:29 final size:29
Alignment explanation
Indices: 82228625--82228723 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
82228615 TGTGTGTACC
82228625 ATGTGAAAAGGGATAGCTTCGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
*
82228654 ATGTAAAAAGGGGATAGCTTCGGCTATCGA
1 ATGTGAAAA-GGGATAGCTTCGGCTATCGA
* ** *
82228684 ATGTGGAAAGGGATAGCTTTTGCTATTGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCGA
82228713 ATGTGAAAAGG
1 ATGTGAAAAGG
82228724 TTAGGTATAC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 35 0.56
30 27 0.44
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.26
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCGA
Found at i:82228758 original size:33 final size:33
Alignment explanation
Indices: 82228716--82228877 Score: 175
Period size: 33 Copynumber: 5.0 Consensus size: 33
82228706 CTATTGAATG
* *
82228716 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * * *
82228749 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * * * *
82228781 TGAAAAGGCTATGTACACTTTCTGTGTA-CACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
* * *
82228813 TGAAAAGGAAAGGTATACTTTGTGTATACCATA
1 TGAAAAGGATAGGTATACTTTGTGTGTACCACA
*
82228846 TGAAAAGGAAAGGTATACTTTGTGTGTACCAC
1 TGAAAAGGATAGGTATACTTTGTGTGTACCAC
82228878 TCAGAAAGAA
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
32 55 0.49
33 57 0.51
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.33
Consensus pattern (33 bp):
TGAAAAGGATAGGTATACTTTGTGTGTACCACA
Found at i:82228794 original size:32 final size:32
Alignment explanation
Indices: 82228716--82228874 Score: 167
Period size: 32 Copynumber: 4.9 Consensus size: 32
82228706 CTATTGAATG
* * *
82228716 TGAAAAGGTTAGGTATACTTTGTGTATACCACA
1 TGAAAAGGATAGGTATACTTTGTGTGTA-CACT
* * *
82228749 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACACT
* * * *
82228781 TGAAAAGGCTATGTACACTTTCTGTGTACACT
1 TGAAAAGGATAGGTATACTTTGTGTGTACACT
* *
82228813 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGATAGGTATACTTTGTGTGTACAC-T
*
82228845 ATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 -TGAAAAGGATAGGTATACTTTGTGTGTAC
82228875 CACTCAGAAA
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
31 1 0.01
32 57 0.51
33 53 0.48
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (32 bp):
TGAAAAGGATAGGTATACTTTGTGTGTACACT
Found at i:82228894 original size:97 final size:97
Alignment explanation
Indices: 82228716--82228895 Score: 229
Period size: 97 Copynumber: 1.9 Consensus size: 97
82228706 CTATTGAATG
** ** *
82228716 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
* ** *
82228781 TGAAAAGGCTATGTACACTTTCTGTGTACACT
66 AGAAAAGGAAACGTACACTTTCTGTGTACACT
* *
82228813 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCAC
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CAC
82228878 TCAG-AAA-GAAACGTACAC
65 T-AGAAAAGGAAACGTACAC
82228896 CTCGAGTGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
97 62 0.89
98 7 0.10
99 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (97 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
AGAAAAGGAAACGTACACTTTCTGTGTACACT
Found at i:82228905 original size:97 final size:97
Alignment explanation
Indices: 82228716--82228924 Score: 226
Period size: 97 Copynumber: 2.1 Consensus size: 97
82228706 CTATTGAATG
** ** *
82228716 TGAAAAGGTTAGGTATACTTTGTGTATACCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
* ** * * * *
82228781 TGAAAAGGCTATGTACACTTTCTGTGTACACT
66 AGAAAAGGAAACGTACACTCTCAGTGTACAAT
* *
82228813 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCAC
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CAC
82228878 TCAG-AAA-GAAACGTACAC-CTCGAGTGTACAAT
65 T-AGAAAAGGAAACGTACACTCTC-AGTGTACAAT
*
82228910 TGGAAAAGAAAAGGT
1 T-GAAAAGGAAAGGT
82228925 CCATCAGAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
96 2 0.02
97 71 0.76
98 19 0.20
99 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (97 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
AGAAAAGGAAACGTACACTCTCAGTGTACAAT
Found at i:82244943 original size:18 final size:18
Alignment explanation
Indices: 82244917--82244953 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
82244907 AGCTAGGAAG
82244917 AATGATTATTCTAACACA
1 AATGATTATTCTAACACA
*
82244935 AATGGTTATTCTAACACA
1 AATGATTATTCTAACACA
82244953 A
1 A
82244954 GTATGCTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.32
Consensus pattern (18 bp):
AATGATTATTCTAACACA
Found at i:82245564 original size:104 final size:104
Alignment explanation
Indices: 82245384--82245571 Score: 322
Period size: 104 Copynumber: 1.8 Consensus size: 104
82245374 CAAGTCACAT
* *
82245384 GCCCGTCTGCTTAGGCCGTATGGCGAATTAAATTCCAAAAATTAAATGCAGACTTCACACGATCT
1 GCCCGTCTGCTTAGGCCGTATGGAGAATTAAATTCCAAAAATTAAATGCAGACTTCACACGACCT
82245449 GGGCACATGCCCATGTCCTCAGGCCGTGTCCTTCACACG
66 GGGCACATGCCCATGTCCTCAGGCCGTGTCCTTCACACG
* * * *
82245488 GCCCGTGTGCTTAGGCCGTATGGAGAATTAAATTCTAAAAATTAAGTGCAGACTTCACACGGCCT
1 GCCCGTCTGCTTAGGCCGTATGGAGAATTAAATTCCAAAAATTAAATGCAGACTTCACACGACCT
82245553 GGGCACATGCCCATGTCCT
66 GGGCACATGCCCATGTCCT
82245572 TTACACAGCT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
104 78 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (104 bp):
GCCCGTCTGCTTAGGCCGTATGGAGAATTAAATTCCAAAAATTAAATGCAGACTTCACACGACCT
GGGCACATGCCCATGTCCTCAGGCCGTGTCCTTCACACG
Found at i:82263150 original size:31 final size:31
Alignment explanation
Indices: 82263107--82263175 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
82263097 TTTACCGAGG
82263107 AGAAGTAAGACTGTGTATTGATCAGGCTGCAA
1 AGAA-TAAGACTGTGTATTGATCAGGCTGCAA
82263139 AGAATAAGACTGTGTATTGATCAGGCTGCAA
1 AGAATAAGACTGTGTATTGATCAGGCTGCAA
82263170 AGAATA
1 AGAATA
82263176 TCAATAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 33 0.89
32 4 0.11
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.25
Consensus pattern (31 bp):
AGAATAAGACTGTGTATTGATCAGGCTGCAA
Found at i:82268285 original size:62 final size:62
Alignment explanation
Indices: 82268188--82268311 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
82268178 GTCCTTACTT
*
82268188 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGTTGATAGGTAGCATCTTGGTAGGAA
1 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
82268250 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
1 TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
82268312 AACTTTGCAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (62 bp):
TCATAACTGATATGCGAGTAGTTTTCATATTTCTGTGCTGATAGGTAGCATCTTGGTAGGAA
Found at i:82271924 original size:16 final size:16
Alignment explanation
Indices: 82271890--82271924 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
82271880 GGTTTATAAA
* *
82271890 TTATATTGGATTGGGT
1 TTATATTGGATAGGAT
82271906 TTATATTGGATAGGAT
1 TTATATTGGATAGGAT
82271922 TTA
1 TTA
82271925 GGAGTGCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (16 bp):
TTATATTGGATAGGAT
Found at i:82273000 original size:3 final size:3
Alignment explanation
Indices: 82272994--82273034 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
82272984 AAAAGAAGAA
* * *
82272994 GAG GAG GAG GAG AAA GAG GAG GAG GAG GAG GAG GAG AAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
82273035 TAAGAGAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:82273010 original size:21 final size:21
Alignment explanation
Indices: 82272985--82273026 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
82272975 AAGAAGAAGA
82272985 AAAGAAGAAGAGGAGGAGGAG
1 AAAGAAGAAGAGGAGGAGGAG
* *
82273006 AAAGAGGAGGAGGAGGAGGAG
1 AAAGAAGAAGAGGAGGAGGAG
82273027 GAGAAGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAGAGGAGGAGGAG
Found at i:82273015 original size:18 final size:18
Alignment explanation
Indices: 82272989--82273023 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82272979 AGAAGAAAAG
82272989 AAGAAGAGGAGGAGGAGA
1 AAGAAGAGGAGGAGGAGA
*
82273007 AAGAGGAGGAGGAGGAG
1 AAGAAGAGGAGGAGGAG
82273024 GAGGAGAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (18 bp):
AAGAAGAGGAGGAGGAGA
Found at i:82273708 original size:36 final size:36
Alignment explanation
Indices: 82273668--82273739 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
82273658 GGTCAACGGG
* *
82273668 CAAGATTTAACATTGATACTTAATTGAGCTAATTTT
1 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
82273704 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
1 CAAGATTTAACATTAATACTTAATTGAACTAATTTT
82273740 TAAGTTTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (36 bp):
CAAGATTTAACATTAATACTTAATTGAACTAATTTT
Found at i:82275423 original size:21 final size:21
Alignment explanation
Indices: 82275397--82275436 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82275387 TATGTTAATT
*
82275397 TTAAAAAATAAATAAAAGGTA
1 TTAAAAAATAAACAAAAGGTA
*
82275418 TTAAAACATAAACAAAAGG
1 TTAAAAAATAAACAAAAGG
82275437 AAAATGCACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.20
Consensus pattern (21 bp):
TTAAAAAATAAACAAAAGGTA
Found at i:82276568 original size:77 final size:77
Alignment explanation
Indices: 82276437--82276579 Score: 187
Period size: 77 Copynumber: 1.9 Consensus size: 77
82276427 ATTTATTTGA
* * * * *
82276437 TGGCTAAGATCCAACATAAATTGTGAATTCTTGATAGCTTGAGTGAGAAACATCGAATTATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
82276502 TGCGATCCACTG
66 TGCGATCCACTG
* * * * * *
82276514 TGGCTAAGATCTAACATAAGTTGTGGATTCTCGGCAACTTGAGTAAGTAGCATCGAATCATTATT
1 TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
82276579 T
66 T
82276580 AGCAATGGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (77 bp):
TGGCTAAGATCCAACATAAATTGTGAATTCTCGACAACTTGAGTAAGAAACATCGAATCATTATT
TGCGATCCACTG
Found at i:82278220 original size:45 final size:45
Alignment explanation
Indices: 82278156--82278241 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
82278146 TATTAACTAA
82278156 AAACGGTTTCCATAATAGTGGTCACCGCTGAGACTCTGTCGCACC
1 AAACGGTTTCCATAATAGTGGTCACCGCTGAGACTCTGTCGCACC
* *
82278201 AAACGGTTTCCATACTAGTGGTCACCGCTGAGCCTCTGTCG
1 AAACGGTTTCCATAATAGTGGTCACCGCTGAGACTCTGTCG
82278242 GACCGACCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (45 bp):
AAACGGTTTCCATAATAGTGGTCACCGCTGAGACTCTGTCGCACC
Found at i:82281851 original size:42 final size:41
Alignment explanation
Indices: 82281738--82281859 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
82281728 TACCATACCA
* * * * *
82281738 ATGCCAGATTCCAGATATGGTCTTACACTGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACAC-GAATCTCACATCG
* *
82281780 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAA-TCTCACATCG
* *
82281823 ATGCCATATCCCAAATATGGTTTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTCA
82281860 ACTAACCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCACATCG
Found at i:82289339 original size:42 final size:41
Alignment explanation
Indices: 82289226--82289347 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
82289216 TACCATACCA
* * * * *
82289226 ATGCCAGATTCCAGATATGGTCTTACACTGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACAC-GAATCTCACATCG
* *
82289268 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAA-TCTCACATCG
* *
82289311 ATGCCATATCCCAAATATGGTTTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTCA
82289348 ACTAACCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCACATCG
Found at i:82303294 original size:5 final size:6
Alignment explanation
Indices: 82303272--82303302 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
82303262 GATAAGAAAG
82303272 AAAAATT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT
82303303 TTGTCAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:82303454 original size:23 final size:23
Alignment explanation
Indices: 82303424--82303470 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
82303414 AAGCAAAAGT
82303424 TAACATTCACGCTCGTATAGGGA
1 TAACATTCACGCTCGTATAGGGA
82303447 TAACATTCACGCTCGTATAGGGA
1 TAACATTCACGCTCGTATAGGGA
82303470 T
1 T
82303471 CTGAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TAACATTCACGCTCGTATAGGGA
Found at i:82310432 original size:46 final size:45
Alignment explanation
Indices: 82310333--82310550 Score: 174
Period size: 46 Copynumber: 4.7 Consensus size: 45
82310323 TATTTGTGCT
* * *
82310333 GATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTC-ATAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTCGTCTCGA-GGCC
*
82310379 GATGCATGTTCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGCC
* * * * * *
82310425 GATGCATGTCCCAGACATGTCTTATACTAGCACTCATCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGGCC
* * * * *
82310471 GATGCCATGTCCCAGGCATGGTCTTACATTGGCTCTCGTAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGGCC
*
82310519 GATGCATGTCCCAAACATGTCTTACACTAGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCT
82310551 CACACAAGTG
Statistics
Matches: 137, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 65 0.47
47 27 0.20
48 19 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGCC
Found at i:82310521 original size:94 final size:92
Alignment explanation
Indices: 82310333--82310554 Score: 247
Period size: 94 Copynumber: 2.4 Consensus size: 92
82310323 TATTTGTGCT
*
82310333 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATGCATGTTCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACA
*
82310396 TGTCTTACACTAGCTTACGTCTCGAGGCC
64 TGTCTTACACTAGCTTACGTATCGAGGCC
* * * *
82310425 GATGCATGTCCCAGACATGTCTTATACTAGCACTCATCTCA-ATGCTGATGCCATGTCCCAGGCA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAGACA
* * *
82310489 TGGTCTTACATTGGCTCT-CGTAAT-GTGGCC
64 T-GTCTTACACTAGCT-TACGT-ATCGAGGCC
* *
82310519 GATGCATGTCCCAAACATGTCTTACACTAGCTCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
82310555 CAAGTGACCC
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 9 0.08
91 16 0.15
92 19 0.17
93 12 0.11
94 52 0.47
95 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTTACGTATCGAGGCC
Found at i:82315148 original size:19 final size:20
Alignment explanation
Indices: 82315110--82315148 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
82315100 AGGTATAAAA
*
82315110 TTATTAAAAGTATAATATTT
1 TTATTAAAAATATAATATTT
82315130 TTATTAAAAATAT-ATATTT
1 TTATTAAAAATATAATATTT
82315149 GAAAGCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TTATTAAAAATATAATATTT
Found at i:82320212 original size:12 final size:12
Alignment explanation
Indices: 82320190--82320228 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
82320180 TGACTTTGGT
82320190 TGCTC-TGCCCA
1 TGCTCATGCCCA
82320201 TGCTCATGCCCA
1 TGCTCATGCCCA
*
82320213 TGCCCATGCCCA
1 TGCTCATGCCCA
82320225 TGCT
1 TGCT
82320229 GGGGATAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.13, C:0.44, G:0.18, T:0.26
Consensus pattern (12 bp):
TGCTCATGCCCA
Found at i:82320214 original size:6 final size:6
Alignment explanation
Indices: 82320195--82320227 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
82320185 TTGGTTGCTC
*
82320195 TGCCCA TGCTCA TGCCCA TGCCCA TGCCCA TGC
1 TGCCCA TGCCCA TGCCCA TGCCCA TGCCCA TGC
82320228 TGGGGATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.45, G:0.18, T:0.21
Consensus pattern (6 bp):
TGCCCA
Found at i:82321870 original size:7 final size:7
Alignment explanation
Indices: 82321858--82321889 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
82321848 CAATGTAAAT
82321858 AAAGAAA
1 AAAGAAA
82321865 AAAGAAA
1 AAAGAAA
82321872 AAAGAAA
1 AAAGAAA
82321879 AAA-AAA
1 AAAGAAA
82321885 AAAGA
1 AAAGA
82321890 GAGATAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAGAAA
Found at i:82322123 original size:6 final size:6
Alignment explanation
Indices: 82322112--82322146 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
82322102 TTAATGTATG
82322112 TATACA TATACA TATACA TATACA TATACA TATAC
1 TATACA TATACA TATACA TATACA TATACA TATAC
82322147 TATTTGAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (6 bp):
TATACA
Found at i:82323214 original size:26 final size:28
Alignment explanation
Indices: 82323178--82323229 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
82323168 TTAACCATTC
82323178 TTAAAAAAATAA-AAAAATA-AAATTTG
1 TTAAAAAAATAAGAAAAATATAAATTTG
* *
82323204 TTAAAAGAATAAGAAATATATAAATT
1 TTAAAAAAATAAGAAAAATATAAATT
82323230 ATAAAACTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 6 0.27
28 5 0.23
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (28 bp):
TTAAAAAAATAAGAAAAATATAAATTTG
Found at i:82323254 original size:2 final size:2
Alignment explanation
Indices: 82323249--82323274 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
82323239 CAAAAAAGGA
82323249 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
82323275 GAGAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:82325123 original size:28 final size:27
Alignment explanation
Indices: 82325076--82325154 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
82325066 TTTAATTATA
*
82325076 AAAATTAATACAAAATTTTAATTATATAAAT
1 AAAA-TAATAC-AAA-TTTAATTAAAT-AAT
*
82325107 AAAA-AATGA-AAGATTTAATAAAATAAT
1 AAAATAAT-ACAA-ATTTAATTAAATAAT
82325134 AAAATAATACAAATTTAATTA
1 AAAATAATACAAATTTAATTA
82325155 CTTTTTAGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 16 0.39
28 16 0.39
29 4 0.10
30 1 0.02
31 4 0.10
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (27 bp):
AAAATAATACAAATTTAATTAAATAAT
Found at i:82325149 original size:27 final size:28
Alignment explanation
Indices: 82325076--82325152 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 28
82325066 TTTAATTATA
* *
82325076 AAAATTAATACAAAATTTTAATTATATAAAT
1 AAAA-TAATAC-AAA-TTTAATAAAATAAAT
82325107 AAAA-AATGA-AAGATTTAATAAAAT-AAT
1 AAAATAAT-ACAA-ATTTAATAAAATAAAT
82325134 AAAATAATACAAATTTAAT
1 AAAATAATACAAATTTAAT
82325153 TACTTTTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
27 15 0.38
28 16 0.40
29 4 0.10
30 1 0.03
31 4 0.10
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAATAATACAAATTTAATAAAATAAAT
Found at i:82325612 original size:17 final size:20
Alignment explanation
Indices: 82325573--82325612 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
82325563 TTTTATAAAC
*
82325573 ATTTTATATATATTTTTATA
1 ATTTTATATATATTTCTATA
82325593 ATTTT-TATA-ATTTCTA-A
1 ATTTTATATATATTTCTATA
82325610 ATT
1 ATT
82325613 ATTTTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 4 0.21
20 5 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTATATATATTTCTATA
Found at i:82330139 original size:10 final size:10
Alignment explanation
Indices: 82330112--82330170 Score: 84
Period size: 10 Copynumber: 5.9 Consensus size: 10
82330102 TTAAATTCTA
82330112 AAAGATAAAT
1 AAAGATAAAT
82330122 ACAA-ATAAAT
1 A-AAGATAAAT
*
82330132 AAAGATAATT
1 AAAGATAAAT
82330142 AAAGATAAAT
1 AAAGATAAAT
*
82330152 AAGGATAAAT
1 AAAGATAAAT
82330162 AAAGATAAA
1 AAAGATAAA
82330171 AGCTAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82332129 original size:15 final size:15
Alignment explanation
Indices: 82332109--82332188 Score: 83
Period size: 15 Copynumber: 5.1 Consensus size: 15
82332099 ATTCAAACAA
*
82332109 AATAAAGTAATAAAT
1 AATAAAATAATAAAT
82332124 AATAAAATAAAATAAAAT
1 AATAAAAT--AAT-AAAT
*
82332142 AA-AGTAATATATAAAT
1 AATA-AAATA-ATAAAT
82332158 AATAAAATAATAAAT
1 AATAAAATAATAAAT
82332173 AATAAAATAA-AAAT
1 AATAAAATAATAAAT
82332187 AA
1 AA
82332189 AGAAAAATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
14 6 0.11
15 23 0.41
16 11 0.20
17 7 0.12
18 9 0.16
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:82332134 original size:5 final size:5
Alignment explanation
Indices: 82332124--82332200 Score: 63
Period size: 5 Copynumber: 15.4 Consensus size: 5
82332114 AGTAATAAAT
* * *
82332124 AATAA AATAA AATAA AATAA AGTAA TATATA AAT-- AATAA AATAA TAA-AT
1 AATAA AATAA AATAA AATAA AATAA AATA-A AATAA AATAA AATAA -AATAA
82332173 AATAA AATAAA AATAA AGA-AA AATAA AA
1 AATAA AAT-AA AATAA A-ATAA AATAA AA
82332201 ATTGGGTTGC
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
3 3 0.05
4 3 0.05
5 41 0.71
6 11 0.19
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:82332180 original size:8 final size:8
Alignment explanation
Indices: 82332109--82332182 Score: 66
Period size: 8 Copynumber: 9.2 Consensus size: 8
82332099 ATTCAAACAA
*
82332109 AATAAAGT
1 AATAAAAT
82332117 AAT-AAAT
1 AATAAAAT
82332124 AATAAAAT
1 AATAAAAT
82332132 AA-AATAA-
1 AATAA-AAT
*
82332139 AATAAAGT
1 AATAAAAT
82332147 AATATATAAAT
1 -A-ATA-AAAT
82332158 AATAAAAT
1 AATAAAAT
82332166 AAT-AAAT
1 AATAAAAT
82332173 AATAAAAT
1 AATAAAAT
82332181 AA
1 AA
82332183 AAATAAAGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
7 18 0.33
8 26 0.47
9 4 0.07
10 4 0.07
11 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (8 bp):
AATAAAAT
Found at i:82332194 original size:15 final size:15
Alignment explanation
Indices: 82332107--82332202 Score: 65
Period size: 15 Copynumber: 6.3 Consensus size: 15
82332097 ATATTCAAAC
*
82332107 AAAATAAAG-TAATA
1 AAAATAAAGAAAATA
*
82332121 AATAATAAAATAAAAT-
1 AA-AAT-AAAGAAAATA
*
82332137 AAAATAAAGTAATATA
1 AAAATAAAG-AAAATA
* *
82332153 TAAAT-AATAAAATA
1 AAAATAAAGAAAATA
*
82332167 ATAAAT-AATAAAATA
1 A-AAATAAAGAAAATA
82332182 AAAATAAAGAAAAATA
1 AAAATAAAG-AAAATA
82332198 AAAAT
1 AAAAT
82332203 TGGGTTGCCT
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
14 14 0.22
15 28 0.43
16 20 0.31
17 3 0.05
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAATAAAGAAAATA
Found at i:82332365 original size:21 final size:21
Alignment explanation
Indices: 82332339--82332378 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
82332329 CATATTTGGG
82332339 TTGAATTGTCCCTACACCTTT
1 TTGAATTGTCCCTACACCTTT
82332360 TTGAATTGTCCCTACACCT
1 TTGAATTGTCCCTACACCT
82332379 CTTTCTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.30, G:0.10, T:0.40
Consensus pattern (21 bp):
TTGAATTGTCCCTACACCTTT
Found at i:82336002 original size:10 final size:10
Alignment explanation
Indices: 82335975--82336033 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
82335965 TTAAATTCTA
82335975 AAAGATAAAT
1 AAAGATAAAT
82335985 ACAA-ATAAAT
1 A-AAGATAAAT
*
82335995 AAAGATAATT
1 AAAGATAAAT
*
82336005 AAAGAAAAAT
1 AAAGATAAAT
*
82336015 AAGGATAAAT
1 AAAGATAAAT
82336025 AAAGATAAA
1 AAAGATAAA
82336034 AGTTAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 2 0.05
10 37 0.90
11 2 0.05
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:82339498 original size:16 final size:17
Alignment explanation
Indices: 82339471--82339503 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
82339461 ACTTACTTAA
82339471 TACTTGATAATCTCAAT
1 TACTTGATAATCTCAAT
82339488 TACTT-ATAATCTCAAT
1 TACTTGATAATCTCAAT
82339504 ATTAAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.18, G:0.03, T:0.42
Consensus pattern (17 bp):
TACTTGATAATCTCAAT
Found at i:82339802 original size:54 final size:54
Alignment explanation
Indices: 82339620--82339813 Score: 230
Period size: 55 Copynumber: 3.6 Consensus size: 54
82339610 TTACCATTGA
* * * * *
82339620 CATGTCTTGACATGGTCTTACGTGGTATGCTTGCCTTAT-GAACTCACCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
* * * *
82339673 CATGCCTTGACATGGTCTTACATGAGA-CTTTTTCCTTATAGTAACTCATCAATAC
1 CATGCCTTGACATGGTCTTACATGATATC-CTTGCCTTATAG-AACTCATCAATGC
* * * *
82339728 CATGTCATGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGC
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
*
82339782 CATGCCTTGGCATGGTCTTACATGATATCCTT
1 CATGCCTTGACATGGTCTTACATGATATCCTT
82339814 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
53 31 0.27
54 40 0.34
55 44 0.38
56 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGC
Found at i:82339847 original size:47 final size:47
Alignment explanation
Indices: 82339792--82339913 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
82339782 CATGCCTTGG
* *
82339792 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
82339839 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
82339886 CATGGTCTTCCATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
82339914 GTACTAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:82339987 original size:47 final size:46
Alignment explanation
Indices: 82339936--82340141 Score: 197
Period size: 45 Copynumber: 4.5 Consensus size: 46
82339926 AATCTTGATG
*
82339936 TGGTCTTACATGGAGTCCTTAATCAATGCCGATGCCATGTCTTGATA
1 TGGTCTTACATGGA-TCCTTAATCAATGCCGATGCCATGTCTTGACA
* * ** * *
82339983 TGGTCTTACACAGGATCCTT--GCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-TGGATCCTTAATCAATGCCGATGCCATGTCTTGACA
*
82340028 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCTTGTCTTGACA
1 TGGTCTTACATGG-ATCCTTAATCAATGCCGATGCCATGTCTTGACA
* ** * *
82340075 TGGTCTTACACGGGATCCTT-GCCTTAT--CAATGCCATGTCTTGACA
1 TGGTCTTACA-TGGATCCTTAATC-AATGCCGATGCCATGTCTTGACA
*
82340120 TGGCCTTACATGGTATCCTTAA
1 TGGTCTTACATGG-ATCCTTAA
82340142 CCATCAATTC
Statistics
Matches: 128, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
44 4 0.03
45 66 0.52
46 1 0.01
47 52 0.41
48 5 0.04
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (46 bp):
TGGTCTTACATGGATCCTTAATCAATGCCGATGCCATGTCTTGACA
Found at i:82340047 original size:92 final size:92
Alignment explanation
Indices: 82339936--82340141 Score: 351
Period size: 92 Copynumber: 2.2 Consensus size: 92
82339926 AATCTTGATG
*
82339936 TGGTCTTACATGG-AGTCCTTAATCAATGCCGATGCCATGTCTTGATATGGTCTTACACAGGATC
1 TGGTCTTACATGGTA-TCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATC
82340000 CTTGCCTTACCAATGCCATGTCTTGACA
65 CTTGCCTTACCAATGCCATGTCTTGACA
* *
82340028 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCTTGTCTTGACATGGTCTTACACGGGATCC
1 TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATCC
*
82340093 TTGCCTTATCAATGCCATGTCTTGACA
66 TTGCCTTACCAATGCCATGTCTTGACA
*
82340120 TGGCCTTACATGGTATCCTTAA
1 TGGTCTTACATGGTATCCTTAA
82340142 CCATCAATTC
Statistics
Matches: 108, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 107 0.99
93 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (92 bp):
TGGTCTTACATGGTATCCTTAATCAATGCCGATGCCATGTCTTGACATGGTCTTACACAGGATCC
TTGCCTTACCAATGCCATGTCTTGACA
Found at i:82343929 original size:48 final size:48
Alignment explanation
Indices: 82343847--82344222 Score: 432
Period size: 48 Copynumber: 7.8 Consensus size: 48
82343837 ATACTAGGGT
* * * *
82343847 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCCAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * * * * *
82343895 TAGGTGACCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * *
82343943 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * * **
82343991 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
*
82344039 TATGAGAGCTAGTGTAAGACCAT-TTCT-GAGACATGGCATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTT-TGGA-ACATGGCATCGGCCTCAA
* * * **
82344087 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * *
82344135 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
* * *
82344183 TATGCGAGCCAATGTAAGACCATGTTTGGAATATGGCATC
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC
82344223 ACCATTGTTA
Statistics
Matches: 267, Mismatches: 57, Indels: 8
0.80 0.17 0.02
Matches are distributed among these distances:
47 4 0.01
48 260 0.97
49 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCTCAA
Found at i:82344011 original size:96 final size:96
Alignment explanation
Indices: 82343847--82344305 Score: 643
Period size: 96 Copynumber: 4.8 Consensus size: 96
82343837 ATACTAGGGT
* * *
82343847 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCCAATAGGTGACCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* *
82343912 GACCATGTTTGGAACATGGCATTGACATTAA
66 GACCATGTTTGGAACATGGCATCGACATTGA
*
82343943 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* *
82344008 GACCATGTTTGGAACATGACATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGACATTGA
* *
82344039 TATGAGAGCTAGTGTAAGACCATTTCTGAGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* *
82344104 GACCATGTCTGGAACATGGCATCGGCATTGA
66 GACCATGTTTGGAACATGGCATCGACATTGA
* * * *
82344135 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCTCAATATGCGAGCCAATGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
* *
82344200 GACCATGTTTGGAATATGGCATC-ACCATTGT
66 GACCATGTTTGGAACATGGCATCGA-CATTGA
* * * * * *
82344231 TATGTA-AACTAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATGTATGAGAGCCAGCG
1 TATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATATGTGAGCCAGTG
*
82344295 TAAGATCATGT
63 TAAGACCATGT
82344306 CCGGGACATA
Statistics
Matches: 326, Mismatches: 33, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
96 301 0.92
97 4 0.01
98 21 0.06
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGACATTGA
Found at i:82344121 original size:144 final size:144
Alignment explanation
Indices: 82343847--82344297 Score: 433
Period size: 144 Copynumber: 3.1 Consensus size: 144
82343837 ATACTAGGGT
* * * * * ** * * *
82343847 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCCCAATAGGTGACCCAGTGTAA
1 TATGAGAGCCAGTGTAAAACCATGTTTGGAACATGACATCGGCATCAATATGAGAGCCAGTGTAA
* * * *
82343912 GACCATGTTTGGAACATGGCATTGACATTAATATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
66 GACCATGTTTGGAACATGGCATCGACATCAATATGAGAGCCAGTGTAAGACCATGTCTGGAACAT
* *
82343977 GGTATCGGCCTCAA
131 GGCATCGGCATCAA
* * ** *
82343991 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGATATGAGAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAAACCATGTTTGGAACATGACATCGGCATCAATATGAGAGCCAGTGTAA
* * *
82344056 GACCAT-TTCT-GAGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTCTGGAAC
66 GACCATGTT-TGGA-ACATGGCATCGACATCAATATGAGAGCCAGTGTAAGACCATGTCTGGAAC
**
82344119 ATGGCATCGGCATTGA
129 ATGGCATCGGCATCAA
* * * * * *
82344135 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCTCAATATGCGAGCCAATGTAA
1 TATGAGAGCCAGTGTAAAACCATGTTTGGAACATGACATCGGCATCAATATGAGAGCCAGTGTAA
* *** * * *
82344200 GACCATGTTTGGAATATGGCATC-ACCATTGTTATGTA-AACTAGTGTAAGACCATGTCTGGGAC
66 GACCATGTTTGGAACATGGCATCGA-CATCAATATG-AGAGCCAGTGTAAGACCATGTCTGGAAC
* * *
82344263 ATGGCATTGGCACTGATG
129 ATGGCATCGGCA-TCA-A
*
82344281 TATGAGAGCCAGCGTAA
1 TATGAGAGCCAGTGTAA
82344298 GATCATGTCC
Statistics
Matches: 248, Mismatches: 51, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
143 4 0.02
144 224 0.90
145 5 0.02
146 15 0.06
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (144 bp):
TATGAGAGCCAGTGTAAAACCATGTTTGGAACATGACATCGGCATCAATATGAGAGCCAGTGTAA
GACCATGTTTGGAACATGGCATCGACATCAATATGAGAGCCAGTGTAAGACCATGTCTGGAACAT
GGCATCGGCATCAA
Found at i:82344247 original size:48 final size:47
Alignment explanation
Indices: 82343847--82344269 Score: 329
Period size: 48 Copynumber: 8.8 Consensus size: 47
82343837 ATACTAGGGT
* * **
82343847 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CCAA
1 TATGA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GCCATTAA
* * * *
82343895 TAGGTG-ACCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTAA
1 TA--TGAAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTAA
* * * *
82343943 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGTATCGGCC-TCAA
1 TATGA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GCCATTAA
* * * * *
82343991 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGGCATTGA
1 TATG-AAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTAA
*
82344039 TATGAGAGCTAGTGTAAGACCAT-TTCT-GAGACATGGCATCGGCC-TCAA
1 TATGA-AGCTAGTGTAAGACCATGTT-TGGA-ACATGGCATC-GCCATTAA
* * * * *
82344087 TATGTGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGA
1 TATG-AAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTAA
* * *
82344135 TATGAGAGCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCC-TCAA
1 TATGA-AGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GCCATTAA
* * * * * **
82344183 TATGCGAGCCAATGTAAGACCATGTTTGGAATATGGCATCACCATTGT
1 TATG-AAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTAA
* * *
82344231 TATGTAAACTAGTGTAAGACCATGTCTGGGACATGGCAT
1 TATG-AAGCTAGTGTAAGACCATGTTTGGAACATGGCAT
82344270 TGGCACTGAT
Statistics
Matches: 292, Mismatches: 63, Indels: 40
0.74 0.16 0.10
Matches are distributed among these distances:
46 2 0.01
47 12 0.04
48 267 0.91
49 9 0.03
50 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (47 bp):
TATGAAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCCATTAA
Found at i:82348077 original size:9 final size:9
Alignment explanation
Indices: 82348060--82348090 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
82348050 TTCTTTAGCT
*
82348060 TATGATGAC
1 TATGTTGAC
82348069 TATGTTGAC
1 TATGTTGAC
82348078 TATGTTGAC
1 TATGTTGAC
82348087 TATG
1 TATG
82348091 ATTATGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
TATGTTGAC
Found at i:82354035 original size:59 final size:54
Alignment explanation
Indices: 82353910--82354044 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
82353900 TTATAGCGGG
* * *
82353910 ATTACCAGTCCAGGCTAAATCCCCTATAATATAAACTCATAGAGTATTGTTGGA
1 ATTACCAGTCCAGGCTAAATCCCCTACAACATAAACTCAAAGAGTATTGTTGGA
* * *
82353964 ATTACTAGTCCAGGCTAAATCCCCTACAACGGCATATACTCAAATGAG-ATTGGATTTGA
1 ATTACCAGTCCAGGCTAAATCCCCTACAA---CATAAACTCAAA-GAGTATT-G-TTGGA
82354023 ATTACCAGTCCAGGCTAAATCC
1 ATTACCAGTCCAGGCTAAATCC
82354045 GTTCACACAT
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
54 27 0.40
57 12 0.18
58 4 0.06
59 25 0.37
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (54 bp):
ATTACCAGTCCAGGCTAAATCCCCTACAACATAAACTCAAAGAGTATTGTTGGA
Found at i:82362485 original size:27 final size:27
Alignment explanation
Indices: 82362444--82362497 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82362434 TGTCATGTGA
* *
82362444 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
82362471 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
82362498 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:82362933 original size:101 final size:98
Alignment explanation
Indices: 82362745--82362974 Score: 307
Period size: 100 Copynumber: 2.3 Consensus size: 98
82362735 TATTGTGAGG
* * *
82362745 TCACGTGTGTAGTACTAAGTGCAGGCTACGACCTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACT
* *
82362810 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCAGATAA-TT-GA
* * **
82362845 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATT-GGTCACATGTGTAGTAC
* * *
82362910 TAAGTGCAGGCTATTACGTGTACCAGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCAGATAATTGA
* *
82362944 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
82362975 TGCATACCAG
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 30 0.26
100 43 0.37
101 42 0.37
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACCTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCAGATAATTGA
Found at i:82362983 original size:49 final size:50
Alignment explanation
Indices: 82362742--82362988 Score: 284
Period size: 49 Copynumber: 5.0 Consensus size: 50
82362732 ATCTATTGTG
* * * *
82362742 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACGA-CCTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC-GTACCAGATAATT
* *
82362792 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * * * * * **
82362842 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* * *
82362892 AGGTCACATGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
82362942 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
82362989 CCTTGTCTAC
Statistics
Matches: 168, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:82365322 original size:19 final size:19
Alignment explanation
Indices: 82365285--82365320 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82365275 AGTTAGAGAA
*
82365285 TGAATTTACTTTGGTAAAT
1 TGAATTTACTTTAGTAAAT
82365304 TGAA-TTACTTTAGTAAA
1 TGAATTTACTTTAGTAAA
82365321 ATGTCGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (19 bp):
TGAATTTACTTTAGTAAAT
Found at i:82368400 original size:27 final size:27
Alignment explanation
Indices: 82368359--82368412 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82368349 TGTCATGTGA
* *
82368359 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
82368386 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
82368413 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:82368849 original size:99 final size:97
Alignment explanation
Indices: 82368660--82368900 Score: 317
Period size: 99 Copynumber: 2.5 Consensus size: 97
82368650 TATTGTGAGG
* *
82368660 TCACGTGTGTAGTACTAAGTGCAGGCTACTACTGTACCGGATAATTGGTCGCATGTGTAGTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACTGTACCAGATAATTGGTCACATGTGTAGTACTA
*
82368725 AGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AGTGCAGGCTACTACGCGTACCCGATAA-TT-GA
* **
82368759 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAC-TGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
82368824 TAAGTGCAGGCTA-TACGTGTA-CCGATAATTGG
64 TAAGTGCAGGCTACTACGCGTACCCGATAATTGA
* *
82368856 TCGCATGTGTAGTACTAAGTGCAGGCTACTA-TGCGTACCAGATAA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACT--GTACCAGATAA
82368901 CCTTGTCTAC
Statistics
Matches: 125, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
95 1 0.01
97 38 0.30
98 2 0.02
99 39 0.31
100 16 0.13
101 29 0.23
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (97 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACTGTACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCCGATAATTGA
Found at i:82368898 original size:97 final size:99
Alignment explanation
Indices: 82368660--82368900 Score: 303
Period size: 97 Copynumber: 2.4 Consensus size: 99
82368650 TATTGTGAGG
* * *
82368660 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-CTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTAGC-GTACCAGATAATTGGTCACATGTGTAGTACT
*
82368724 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
65 AAGTGCAGGCTACTACGCGTACCCGATAACTTCGA
* * * **
82368759 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA-GCGTACCAGATAATT-GGTCACATGTGTAGTAC
* *
82368824 TAAGTGCAGGCTA-TACGTGTA-CCGATAA-TT-GG
64 TAAGTGCAGGCTACTACGCGTACCCGATAACTTCGA
*
82368856 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA-GCGTACCAGATAA
82368901 CCTTGTCTAC
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
97 39 0.32
98 2 0.02
99 38 0.31
100 15 0.12
101 29 0.24
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTAGCGTACCAGATAATTGGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGCGTACCCGATAACTTCGA
Found at i:82371189 original size:19 final size:19
Alignment explanation
Indices: 82371152--82371187 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82371142 AGTTAGAGAA
*
82371152 TGAATTTACTTTGGTAAAT
1 TGAATTTACTTTAGTAAAT
82371171 TGAA-TTACTTTAGTAAA
1 TGAATTTACTTTAGTAAA
82371188 ATGTCGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (19 bp):
TGAATTTACTTTAGTAAAT
Found at i:82374260 original size:27 final size:27
Alignment explanation
Indices: 82374219--82374272 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
82374209 TGTCATGTGA
* *
82374219 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
82374246 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
82374273 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:82375996 original size:46 final size:44
Alignment explanation
Indices: 82375891--82375998 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
82375881 TGTCTTTGAC
** * * *
82375891 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
* *
82375935 ATGGAATTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
82375981 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
82375999 TTTCTGTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
44 32 0.59
46 22 0.41
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:82383359 original size:46 final size:44
Alignment explanation
Indices: 82383253--82383360 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
82383243 TGTCTTTGAC
** * *
82383253 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
* *
82383297 ATGGAATTACATGGCTCAATCCTGTCTCCAATGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATA--TATAAT
82383343 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
82383361 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 33 0.60
46 22 0.40
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAATGCCATATATAAT
Found at i:82386399 original size:22 final size:21
Alignment explanation
Indices: 82386369--82386412 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
82386359 ACACACATCA
82386369 TCTAAGTTTTGGC-CTTAGTTTT
1 TCTAAGTTTT--CTCTTAGTTTT
*
82386391 TCTAGGTTTTCTCTTAGTTTT
1 TCTAAGTTTTCTCTTAGTTTT
82386412 T
1 T
82386413 TTGCAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 1 0.05
21 10 0.50
22 9 0.45
ACGTcount: A:0.11, C:0.14, G:0.16, T:0.59
Consensus pattern (21 bp):
TCTAAGTTTTCTCTTAGTTTT
Found at i:82388834 original size:20 final size:20
Alignment explanation
Indices: 82388806--82388849 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
82388796 TACTAACTTG
* *
82388806 CAACTTACCATAATCTTTTA
1 CAACATACCATAATCTTTCA
*
82388826 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
82388846 CAAC
1 CAAC
82388850 TTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.30, G:0.02, T:0.32
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:82388982 original size:42 final size:42
Alignment explanation
Indices: 82388935--82389044 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
82388925 TACCATACCA
*
82388935 ATGCCATATCCCAGATATGGTCTTACATGGAA-TCTCATA-TCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAGTCTCATAGT-G
* *
82388977 ATGCCAATAGCCCAGTTATGGTCTTACACGAAGTCTCATAGTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATAGTG
* * *
82389020 ATGCCATATCCTATATATAGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
82389045 AACGTAATCT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
42 23 0.40
43 33 0.58
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAGTG
Found at i:82400323 original size:27 final size:27
Alignment explanation
Indices: 82400285--82400350 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
82400275 TTACCTAAAC
*
82400285 CCTCTATTTGATAAAATGAACGTTATG
1 CCTCTATGTGATAAAATGAACGTTATG
**
82400312 CCTCTATGTGATAAAATGATTGTTATG
1 CCTCTATGTGATAAAATGAACGTTATG
82400339 -CTCCTATGTGAT
1 CCT-CTATGTGAT
82400351 GTATGATTGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (27 bp):
CCTCTATGTGATAAAATGAACGTTATG
Found at i:82403183 original size:41 final size:41
Alignment explanation
Indices: 82403130--82403299 Score: 129
Period size: 41 Copynumber: 4.1 Consensus size: 41
82403120 AGTCTGACTC
*
82403130 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA-
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAG
* * * *
82403169 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TC-CAG
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGGAG
* * *
82403209 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA-
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--AG
* * *
82403254 TTAG-CATTGGCTCAAAAGCCCTTCGAGACCAAGCTCGAAT
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAG
82403294 TTAGAC
1 TTAGAC
82403300 CCCGATTAGC
Statistics
Matches: 103, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
39 6 0.06
40 19 0.18
41 47 0.46
42 16 0.16
43 10 0.10
44 1 0.01
45 3 0.03
46 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAG
Found at i:82409358 original size:50 final size:50
Alignment explanation
Indices: 82409276--82409512 Score: 226
Period size: 50 Copynumber: 4.7 Consensus size: 50
82409266 GGAATTGAGT
* * * * * * ** *
82409276 ATATTCGGCCACATAGGTATGTACATAAGTGATGTTGTATTGGATCTTGA
1 ATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTGGATCTTGC
* * ** * *
82409326 ATATTCGACCATGAT-GGTATGCACAAATGTGATATTATTTTTGAAT-TTGT
1 ATATTCGACCAT-ATAGGTAAGCACATATGTGATATTA-AATTGGATCTTGC
* * * * * *
82409376 ATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGC
1 ATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTGGATCTTGC
*
82409426 ATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTTGATCTTGC
1 ATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTGGATCTTGC
* *
82409476 ATATTTGGCCATATAGGTAAGCACATATGTGATATTA
1 ATATTCGACCATATAGGTAAGCACATATGTGATATTA
82409513 TATCTAATCT
Statistics
Matches: 154, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 6 0.04
50 140 0.91
51 8 0.05
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (50 bp):
ATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTGGATCTTGC
Found at i:82409450 original size:100 final size:100
Alignment explanation
Indices: 82409274--82409508 Score: 303
Period size: 100 Copynumber: 2.4 Consensus size: 100
82409264 TGGGAATTGA
* * * * **
82409274 GTATATTCGGCCACATAGGTATGTACATAAGTGATGTTGTATTGGATCTTGAATATTCGACCATG
1 GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
* **
82409339 ATGGTATGCACAAATGTGATATTATTTTTGAAT-TT
66 ATGGTAAGCACAAATGTGATATTAAATTTG-ATCTT
* * *
82409374 GTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGACCAT-
1 GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
*
82409438 ATAGGTAAGCACATATGTGATATTAAATTTGATCTT
66 AT-GGTAAGCACAAATGTGATATTAAATTTGATCTT
* *
82409474 GCATATTTGGCCATATAGGTAAGCACATATGTGAT
1 GTATATTTGGCCATATAGGTAAGTACATATGTGAT
82409509 ATTATATCTA
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 4 0.03
100 113 0.97
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (100 bp):
GTATATTTGGCCATATAGGTAAGTACATATGTGATGTTAAATTGGATCTTGAATATTCGACCATG
ATGGTAAGCACAAATGTGATATTAAATTTGATCTT
Found at i:82409523 original size:50 final size:50
Alignment explanation
Indices: 82409319--82409533 Score: 236
Period size: 50 Copynumber: 4.3 Consensus size: 50
82409309 GTTGTATTGG
* * * * * **
82409319 ATCTTGAATATTCGACCATGAT-GGTATGCACAAATGTGATATTATTTTTGA
1 ATCTTGCATATTTGGCCAT-ATAGGTAAGCACATATGTGATATTAAATTT-A
* * * * *
82409370 AT-TTGTATATTTGGCCATATAAGTAAGTACATATGTGATGTTAAATTTG
1 ATCTTGCATATTTGGCCATATAGGTAAGCACATATGTGATATTAAATTTA
* * *
82409419 ATCTTGCATATTCGACCATATAGGTAAGCACATATGTGATATTAAATTTG
1 ATCTTGCATATTTGGCCATATAGGTAAGCACATATGTGATATTAAATTTA
* *
82409469 ATCTTGCATATTTGGCCATATAGGTAAGCACATATGTGATATTATATCTA
1 ATCTTGCATATTTGGCCATATAGGTAAGCACATATGTGATATTAAATTTA
*
82409519 ATCTTGTATATTTGG
1 ATCTTGCATATTTGG
82409534 TCAAATAAGT
Statistics
Matches: 139, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
49 4 0.03
50 133 0.96
51 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (50 bp):
ATCTTGCATATTTGGCCATATAGGTAAGCACATATGTGATATTAAATTTA
Found at i:82409523 original size:100 final size:100
Alignment explanation
Indices: 82409319--82409530 Score: 275
Period size: 100 Copynumber: 2.1 Consensus size: 100
82409309 GTTGTATTGG
* ** *
82409319 ATCTTGAATATTCGACCATGATGGTATGCACAAATGTGATATTATTTTTGAATTTGTATATTTGG
1 ATCTTGAATATTCGACCATGATGGTAAGCACAAATGTGATATTAAATTTGAATTTGCATATTTGG
* * * *
82409384 CCATATAAGTAAGTACATATGTGATGTTAAATTTG
66 CCATATAAGTAAGCACATATGTGATATTAAATCTA
* *
82409419 ATCTTGCATATTCGACCAT-ATAGGTAAGCACATATGTGATATTAAATTTG-ATCTTGCATATTT
1 ATCTTGAATATTCGACCATGAT-GGTAAGCACAAATGTGATATTAAATTTGAAT-TTGCATATTT
* *
82409482 GGCCATATAGGTAAGCACATATGTGATATTATATCTA
64 GGCCATATAAGTAAGCACATATGTGATATTAAATCTA
*
82409519 ATCTTGTATATT
1 ATCTTGAATATT
82409531 TGGTCAAATA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
99 4 0.04
100 93 0.96
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (100 bp):
ATCTTGAATATTCGACCATGATGGTAAGCACAAATGTGATATTAAATTTGAATTTGCATATTTGG
CCATATAAGTAAGCACATATGTGATATTAAATCTA
Found at i:82414924 original size:43 final size:42
Alignment explanation
Indices: 82414873--82414993 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
82414863 ATATGTGTTC
82414873 TCATGTAAGACCATGTCTGGGACGTTGGCATCGAT-TTGTGAT
1 TCATGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGAT
* * *
82414915 TACGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGAT
1 T-CATGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAT
* *
82414957 TCATGTAAGACCCTGACTGGGACAG-TGGCATCGATAT
1 TCATGTAAGACCATGTCTGGGAC-GTTGGCATCGATAT
82414994 GAGATAGCAT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
41 26 0.39
42 10 0.15
43 31 0.46
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
TCATGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGAT
Found at i:82416299 original size:32 final size:32
Alignment explanation
Indices: 82416254--82416318 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
82416244 TTAGTTAGAA
82416254 AAATGCTTGTCATTTATATGTGGCGTATTGGC
1 AAATGCTTGTCATTTATATGTGGCGTATTGGC
*
82416286 AAATGCTTTTCATTTATATGTGGCGTATTGGC
1 AAATGCTTGTCATTTATATGTGGCGTATTGGC
82416318 A
1 A
82416319 TATTTTGTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.42
Consensus pattern (32 bp):
AAATGCTTGTCATTTATATGTGGCGTATTGGC
Found at i:82417434 original size:27 final size:27
Alignment explanation
Indices: 82417379--82417436 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
82417369 ACCTTTTAAT
* * * *
82417379 TGATAAAATGACTGTTATGCTCATTTG
1 TGATAAAATAACTGTTACGCCCATATG
*
82417406 TGATAAAATAACTGTTACGCCCCTATG
1 TGATAAAATAACTGTTACGCCCATATG
82417433 TGAT
1 TGAT
82417437 GTATGATTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (27 bp):
TGATAAAATAACTGTTACGCCCATATG
Found at i:82419784 original size:46 final size:46
Alignment explanation
Indices: 82419733--82419904 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
82419723 TAGGCATCCA
*
82419733 AGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* *
82419779 AGCTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC--CCG
*
82419826 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
* * *
82419872 AGCTCATTGAGTTGAGTTCGAGTTCGCTTATGG
1 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82419905 GCAGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 58 0.54
47 29 0.27
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCG
Found at i:82419882 original size:93 final size:93
Alignment explanation
Indices: 82419723--82419896 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
82419713 TTTGGATATT
* *
82419723 TAGGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTG
1 TAGGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
82419788 AGTTGAGTCCGAGTTCATGAGATGTAAC
66 AGTTGAGTCCGAGTTCATGAGATGTAAC
* *
82419816 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
1 TAGGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
*
82419881 AGTTGAGTTCGAGTTC
66 AGTTGAGTCCGAGTTC
82419897 GCTTATGGGC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
TAGGCATCCAAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTG
AGTTGAGTCCGAGTTCATGAGATGTAAC
Found at i:82422284 original size:18 final size:18
Alignment explanation
Indices: 82422259--82422311 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 18
82422249 ATGAGTCAAA
82422259 TGTGAATTTAGAAATAATT
1 TGTGAA-TTAGAAATAATT
82422278 T-TGAATTAGTAAAT--TT
1 TGTGAATTAG-AAATAATT
82422294 TGTGAATTA-AAATAATT
1 TGTGAATTAGAAATAATT
82422311 T
1 T
82422312 ATTAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 14 0.47
18 8 0.27
19 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
TGTGAATTAGAAATAATT
Found at i:82425850 original size:27 final size:27
Alignment explanation
Indices: 82425811--82425862 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
82425801 AAAGTAACCG
* *
82425811 TAATGCCCTTGTAGGGTAAAATGACCA
1 TAATACCCCTGTAGGGTAAAATGACCA
* *
82425838 TAATACCCCTGTATGGTAGAATGAC
1 TAATACCCCTGTAGGGTAAAATGAC
82425863 GATTATGCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (27 bp):
TAATACCCCTGTAGGGTAAAATGACCA
Found at i:82430709 original size:33 final size:34
Alignment explanation
Indices: 82430631--82430712 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 34
82430621 ATGGCATGGT
*
82430631 GTGAATGTAAGACCATAGCTGGGCTTTGGCATTTCA
1 GTGAA-GTAAGACCATAACTGGGCTTTGGCA-TTCA
82430667 GTGAA--AAGACCATAACTGGG-TTGTGGCA-TC-
1 GTGAAGTAAGACCATAACTGGGCTT-TGGCATTCA
82430697 GTGAACGTAAGACCAT
1 GTGAA-GTAAGACCAT
82430713 GATTGGACCA
Statistics
Matches: 41, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
30 5 0.12
31 2 0.05
32 2 0.05
33 27 0.66
36 5 0.12
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (34 bp):
GTGAAGTAAGACCATAACTGGGCTTTGGCATTCA
Found at i:82437172 original size:46 final size:46
Alignment explanation
Indices: 82436953--82437173 Score: 200
Period size: 46 Copynumber: 4.8 Consensus size: 46
82436943 ATTTGGTCAT
* * *
82436953 CCGAACTCGTTGAGTTGAGTCCGATTTCACTTATAGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC
* * *
82436999 CCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC
* * * * *
82437045 CCGAACTCATTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--A-GC
* * * *
82437090 ATCTGAACTCGTTGAGTTGAGTTCGATTTCACTTATGGATGTGAAAG-
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC
* *
82437137 CCTAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82437174 GCGGGTTACA
Statistics
Matches: 140, Mismatches: 25, Indels: 20
0.76 0.14 0.11
Matches are distributed among these distances:
42 2 0.01
43 4 0.03
45 6 0.04
46 95 0.68
47 23 0.16
48 3 0.02
49 1 0.01
50 4 0.03
51 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGC
Found at i:82441124 original size:29 final size:29
Alignment explanation
Indices: 82441082--82441211 Score: 179
Period size: 29 Copynumber: 4.5 Consensus size: 29
82441072 GTTTACAATC
* *
82441082 GCCACAAAGACTTCCTTTTAACAGAGATA
1 GCCACAAAGGCTTCCTTTTAACAAAGATA
* * *
82441111 GCCATAAAGGCTTCCTTTTAACAGAGATC
1 GCCACAAAGGCTTCCTTTTAACAAAGATA
* *
82441140 GACACAAAGGCTTTCTTTTAACAAAGATA
1 GCCACAAAGGCTTCCTTTTAACAAAGATA
*
82441169 GCCATAAAGGCTTCCTTTTAACAAAGATA
1 GCCACAAAGGCTTCCTTTTAACAAAGATA
*
82441198 GCGACAAAGGCTTC
1 GCCACAAAGGCTTC
82441212 GATACGAAAA
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (29 bp):
GCCACAAAGGCTTCCTTTTAACAAAGATA
Found at i:82448245 original size:10 final size:10
Alignment explanation
Indices: 82448217--82448247 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
82448207 GAAGTCCAAA
82448217 AATATATTTT
1 AATATATTTT
82448227 AATATTATTTT
1 AATA-TATTTT
82448238 AATATATTTT
1 AATATATTTT
82448248 GCATGATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
AATATATTTT
Found at i:82451051 original size:18 final size:19
Alignment explanation
Indices: 82451028--82451066 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
82451018 CATTCGTGGT
82451028 CAATTAGATC-AAATCATG
1 CAATTAGATCAAAATCATG
**
82451046 CAATTATTTCAAAATCATG
1 CAATTAGATCAAAATCATG
82451065 CA
1 CA
82451067 CCCTCTAGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (19 bp):
CAATTAGATCAAAATCATG
Found at i:82452742 original size:86 final size:86
Alignment explanation
Indices: 82452596--82452771 Score: 343
Period size: 86 Copynumber: 2.0 Consensus size: 86
82452586 ATATGGAACA
82452596 TGACCAAGGGTTGCTTATTCTTGAATGAGCAATTTATCGCAGTCATTTGTTGACAAATCTCATAT
1 TGACCAAGGGTTGCTTATTCTTGAATGAGCAATTTATCGCAGTCATTTGTTGACAAATCTCATAT
82452661 TAATCATTAAGAACACAATGG
66 TAATCATTAAGAACACAATGG
*
82452682 TGACCAAGGGTTGCTTATTCTTGAATGAGCAATTTATCGCAGTCATTTGTTGACAGATCTCATAT
1 TGACCAAGGGTTGCTTATTCTTGAATGAGCAATTTATCGCAGTCATTTGTTGACAAATCTCATAT
82452747 TAATCATTAAGAACACAATGG
66 TAATCATTAAGAACACAATGG
82452768 TGAC
1 TGAC
82452772 AATGAGATAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (86 bp):
TGACCAAGGGTTGCTTATTCTTGAATGAGCAATTTATCGCAGTCATTTGTTGACAAATCTCATAT
TAATCATTAAGAACACAATGG
Found at i:82453869 original size:18 final size:17
Alignment explanation
Indices: 82453848--82453881 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
82453838 AAGATTTAAT
82453848 ATTAAATTTAAATATTAG
1 ATTAAATTT-AATATTAG
82453866 ATTAAATTTAATATTA
1 ATTAAATTTAATATTA
82453882 AAGCGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
ATTAAATTTAATATTAG
Found at i:82458223 original size:43 final size:41
Alignment explanation
Indices: 82458176--82458302 Score: 110
Period size: 42 Copynumber: 3.0 Consensus size: 41
82458166 TCCCAAACGT
82458176 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGTAATCAAATA-CGATGCCA-TGTCCCAGACAG
* *** ** *
82458219 GGTCTTATACAAAATCAAATACGATGTTGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACGATG-CCATGTCCCAGACAG
* **
82458261 TGTCTTACATGTAAATCATAAGCCGATGCCAATGTCCCAGAC
1 GGTCTTACATGT-AATCA-AATACGATGCC-ATGTCCCAGAC
82458303 GTGGCCTTAC
Statistics
Matches: 64, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
42 23 0.36
43 23 0.36
44 18 0.28
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (41 bp):
GGTCTTACATGTAATCAAATACGATGCCATGTCCCAGACAG
Found at i:82476879 original size:33 final size:33
Alignment explanation
Indices: 82476837--82476903 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
82476827 CTTTTACTCG
82476837 CAACTGATAATAGCCTGACCTCAAATCTATTTT
1 CAACTGATAATAGCCTGACCTCAAATCTATTTT
*
82476870 CAACTGATAATAGCCTGATCTCAAATCTATTTT
1 CAACTGATAATAGCCTGACCTCAAATCTATTTT
82476903 C
1 C
82476904 GAAAACACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (33 bp):
CAACTGATAATAGCCTGACCTCAAATCTATTTT
Found at i:82487686 original size:20 final size:20
Alignment explanation
Indices: 82487661--82487712 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
82487651 GAGGCAATGC
82487661 ACACGCCCGTGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
82487681 ACACGCCCATGTGCTTTGGG
1 ACACGCCCGTGTGCTTTGGG
*
82487701 ACACTCCCGTGT
1 ACACGCCCGTGT
82487713 CCCCTACCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.13, C:0.33, G:0.29, T:0.25
Consensus pattern (20 bp):
ACACGCCCGTGTGCTTTGGG
Found at i:82493650 original size:110 final size:109
Alignment explanation
Indices: 82493453--82493672 Score: 368
Period size: 110 Copynumber: 2.0 Consensus size: 109
82493443 CCCGATATAC
82493453 TTAAAGAGCTTATTCTCAAGAAAAGTAGTGTCTTTTCGTAACTTTTAGATTTTAAGCTAATAAGT
1 TTAAAGAGCTTATTCTCAAGAAAAGTAGTGTCTTTTCGTAACTTTTAGATTTTAAGCTAATAAGT
* * * *
82493518 GTAAATGCCTCGTTTTTAGTCATTTGGAGGCCCAACTTGGCCAA
66 ATAAATGCCTCATTTTTAGTCATTTAGAGGCCCAACTCGGCCAA
* * *
82493562 TTAAGGAGCTTATTCTCAAGAAAAGTAGTGTCTTTTTCTTAATTTTTAGATTTTAAGCTAATAAG
1 TTAAAGAGCTTATTCTCAAGAAAAGTAGTGTC-TTTTCGTAACTTTTAGATTTTAAGCTAATAAG
82493627 TATAAATGCCTCATTTTTAGTCATTTAGAGGCCCAACTCGGCCAA
65 TATAAATGCCTCATTTTTAGTCATTTAGAGGCCCAACTCGGCCAA
82493672 T
1 T
82493673 AGTGTTGTTG
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
109 31 0.30
110 72 0.70
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (109 bp):
TTAAAGAGCTTATTCTCAAGAAAAGTAGTGTCTTTTCGTAACTTTTAGATTTTAAGCTAATAAGT
ATAAATGCCTCATTTTTAGTCATTTAGAGGCCCAACTCGGCCAA
Found at i:82499887 original size:20 final size:19
Alignment explanation
Indices: 82499864--82499902 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
82499854 ACTGTTGGGA
82499864 CCAATAGTAACTTTTTTTCT
1 CCAATAGT-ACTTTTTTTCT
* *
82499884 CCAATGGTATTTTTTTTCT
1 CCAATAGTACTTTTTTTCT
82499903 ATATAAACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (19 bp):
CCAATAGTACTTTTTTTCT
Found at i:82502069 original size:49 final size:49
Alignment explanation
Indices: 82501997--82502093 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
82501987 ATTTTTCAAA
82501997 GGTGGGTCATCTTCGCAACCATTTATTAATACAATTAATGATATACAAC
1 GGTGGGTCATCTTCGCAACCATTTATTAATACAATTAATGATATACAAC
82502046 GGTGGGTCATCTTCGCAACCATTTATTAATACAATTAATGATATACAA
1 GGTGGGTCATCTTCGCAACCATTTATTAATACAATTAATGATATACAA
82502094 TGGGGACCTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (49 bp):
GGTGGGTCATCTTCGCAACCATTTATTAATACAATTAATGATATACAAC
Found at i:82502177 original size:18 final size:17
Alignment explanation
Indices: 82502127--82502178 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
82502117 GTCTAGCATG
* *
82502127 GAAGAACAAGATGAAAAT
1 GAAG-ACAAGATGGAGAT
*
82502145 GAAGACAATGTTGGAGAT
1 GAAGACAA-GATGGAGAT
82502163 GAAGATCAAGATGGAG
1 GAAGA-CAAGATGGAG
82502179 GCGTAGGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 3 0.11
ACGTcount: A:0.48, C:0.06, G:0.31, T:0.15
Consensus pattern (17 bp):
GAAGACAAGATGGAGAT
Found at i:82502206 original size:18 final size:18
Alignment explanation
Indices: 82502183--82502223 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
82502173 ATGGAGGCGT
* *
82502183 AGGTGGAGGTGAAGGTGA
1 AGGTGGAGATGAAGATGA
*
82502201 AGGTGGAGATGGAGATGA
1 AGGTGGAGATGAAGATGA
82502219 AGGTG
1 AGGTG
82502224 AATATGATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.54, T:0.17
Consensus pattern (18 bp):
AGGTGGAGATGAAGATGA
Found at i:82502486 original size:15 final size:15
Alignment explanation
Indices: 82502466--82502495 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
82502456 TAAAAATAAA
82502466 ATTATATTGTATTGT
1 ATTATATTGTATTGT
82502481 ATTATATTGTATTGT
1 ATTATATTGTATTGT
82502496 CTTTTTACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (15 bp):
ATTATATTGTATTGT
Found at i:82502501 original size:83 final size:83
Alignment explanation
Indices: 82502402--82502572 Score: 231
Period size: 83 Copynumber: 2.0 Consensus size: 83
82502392 TTTTAATTTG
*
82502402 TATTGTATTGAATTTTTACATCAATAATTTACTTATTCACAATTTA-CCAAAAAAT-AAAAATAA
1 TATTGTATTGAATTTTTACATCAATAATCTACTTATTCACAATTTACCCAAAAAATGAAAAA-AA
82502465 AA-TTATATTGTATTGTATTA
65 AATTTATATTGTATT-T-TTA
** * *
82502485 TATTGTATTGTCTTTTTACATCAATAATCTACTTATTTACAATTTACCCTAAAAATGAAAAAAAA
1 TATTGTATTGAATTTTTACATCAATAATCTACTTATTCACAATTTACCCAAAAAATGAAAAAAAA
82502550 ATGTTTATATTGTATTTTTA
66 A--TTTATATTGTATTTTTA
82502570 TAT
1 TAT
82502573 CAATTATCTA
Statistics
Matches: 78, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
83 42 0.54
84 12 0.15
85 11 0.14
86 1 0.01
87 12 0.15
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.45
Consensus pattern (83 bp):
TATTGTATTGAATTTTTACATCAATAATCTACTTATTCACAATTTACCCAAAAAATGAAAAAAAA
ATTTATATTGTATTTTTA
Found at i:82504387 original size:16 final size:18
Alignment explanation
Indices: 82504366--82504399 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
82504356 TAATAAATAA
82504366 ATAATAA-A-ATGTTATT
1 ATAATAATATATGTTATT
82504382 ATAATAATATATGTTATT
1 ATAATAATATATGTTATT
82504400 GTGAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
ATAATAATATATGTTATT
Found at i:82510065 original size:43 final size:43
Alignment explanation
Indices: 82510018--82510173 Score: 158
Period size: 43 Copynumber: 3.6 Consensus size: 43
82510008 GTGTTCTCAT
*
82510018 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTTCGA
1 GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTTCGA
* * *
82510061 GTAAGACCATGTCTGGGACATCGGCATCG-TAATTGTGA-TTCGT
1 GTAAGACCACGTCTGGGACATTGGCATCGAT-A-TGTGATTTCGA
* * * * *
82510104 GTAAGACC-CTGTCTAGGACAGTGGCATCAACATGTGATTAC-A
1 GTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTTCGA
*
82510146 TGTAAGACCAGGTCTGGGACATTGGCAT
1 -GTAAGACCACGTCTGGGACATTGGCAT
82510174 TGTACGATAT
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 6 0.07
43 80 0.88
44 5 0.05
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTTCGA
Found at i:82517871 original size:17 final size:18
Alignment explanation
Indices: 82517835--82517873 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
82517825 AGCAGCCGAA
82517835 AATTAATGTGTCTAAATT
1 AATTAATGTGTCTAAATT
*
82517853 AATTAATGTG-CTGAATT
1 AATTAATGTGTCTAAATT
82517870 AATT
1 AATT
82517874 TGTGTGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (18 bp):
AATTAATGTGTCTAAATT
Found at i:82519241 original size:83 final size:82
Alignment explanation
Indices: 82519071--82519243 Score: 222
Period size: 83 Copynumber: 2.1 Consensus size: 82
82519061 GTAAAAAAAG
* * *
82519071 AAAAAAATTTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGATAGTTTATAAAT
1 AAAAAAAATTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGATAGTTTAAAAAA
* * * *
82519136 ATATTTATATATATGCAA
66 ATATATAAAAAAATGC-A
*
82519154 AAAAAAAATTACTTCGTGAAATTCAAGTATTATTTTGTAATTATCATTTTAG-TAGTTATTAAAA
1 AAAAAAAATTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGATAG-T-TTAAAA
*
82519218 AAAGTATATAAAAAAATTCA
64 AAA-TATATAAAAAAATGCA
82519238 AAAAAA
1 AAAAAA
82519244 TAAAAAAATT
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
82 3 0.04
83 51 0.65
84 14 0.18
85 10 0.13
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (82 bp):
AAAAAAAATTACTTCGTGAAATTCAAGTATTATATTGTAATTATCATTTTAGATAGTTTAAAAAA
ATATATAAAAAAATGCA
Found at i:82519250 original size:20 final size:20
Alignment explanation
Indices: 82519211--82519265 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
82519201 TTTAGTAGTT
*
82519211 ATTAAAAAAAGTATATAAAAAA
1 ATTAAAAAAA--ATAAAAAAAA
* *
82519233 ATTCAAAAAAATAAAAAAAT
1 ATTAAAAAAAATAAAAAAAA
*
82519253 TTTAAAAAAAATA
1 ATTAAAAAAAATA
82519266 GAGGTGTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 19 0.68
22 9 0.32
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
ATTAAAAAAAATAAAAAAAA
Found at i:82528389 original size:55 final size:55
Alignment explanation
Indices: 82528289--82528418 Score: 136
Period size: 55 Copynumber: 2.4 Consensus size: 55
82528279 GTAATCCTGC
* * * * * *
82528289 CAAATTAACACGGGCGTGCAACACGCTCGTGGCTATAAGCTGTGGTAGAAACTGAT
1 CAAATTAACACGGGCGTGCAACACGCCCATGCCTACAACCCGTGGTAGAAACTG-T
* * * *
82528345 -AAATTAACACGGGCGTGCGACACGCCCATGCCTACCACCCGTGGTCGAAGCTGT
1 CAAATTAACACGGGCGTGCAACACGCCCATGCCTACAACCCGTGGTAGAAACTGT
* *
82528399 CAAAATAACATGGGCGTGCA
1 CAAATTAACACGGGCGTGCA
82528419 CATATATACA
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
54 1 0.02
55 59 0.98
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.18
Consensus pattern (55 bp):
CAAATTAACACGGGCGTGCAACACGCCCATGCCTACAACCCGTGGTAGAAACTGT
Found at i:82534287 original size:18 final size:16
Alignment explanation
Indices: 82534257--82534295 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
82534247 TTAGTAATTA
82534257 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
82534273 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
82534291 AATAA
1 AATAA
82534296 AATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:82535284 original size:43 final size:43
Alignment explanation
Indices: 82535237--82535330 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
82535227 TAATACCATG
* * *
82535237 TCTGGGACA-TCGGCATCGTAATTGTGATT-CGTGTAAGACC-CTA
1 TCTGGGACAGT-GACATCGGAA-TGTGATTACATGTAAGACCAC-A
*
82535280 TCTGGGACAGTGACATCGGCATGTGATTACATGTAAGACCACA
1 TCTGGGACAGTGACATCGGAATGTGATTACATGTAAGACCACA
82535323 TCTGGGAC
1 TCTGGGAC
82535331 GTTGGCATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
42 7 0.16
43 35 0.80
44 2 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (43 bp):
TCTGGGACAGTGACATCGGAATGTGATTACATGTAAGACCACA
Found at i:82537861 original size:53 final size:54
Alignment explanation
Indices: 82537776--82537982 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
82537766 TTTCTTTTTA
* * * *
82537776 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
82537829 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGAATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
82537883 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
82537938 AACTTACCAATGCTATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82537983 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 45 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Done.