Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 244 of 362
Found at i:82537931 original size:55 final size:53
Alignment explanation
Indices: 82537788--82537982 Score: 167
Period size: 54 Copynumber: 3.6 Consensus size: 53
82537778 CTTACCATTT
* * *
82537788 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATG
* * * ** * *
82537841 CCATGCCTTGGCATGGTCTTACATGGA-ATCTTTGCCTTATCGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACAT-GATATCCTTGCCTTAT-G-AACTCACCAATG
* * * * *
82537896 TCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATG
* * * * *
82537950 CTATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGATATCCTT
82537983 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 33 0.30
54 39 0.35
55 38 0.35
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATG
Found at i:82548573 original size:13 final size:13
Alignment explanation
Indices: 82548527--82548574 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
82548517 TATTTCTATG
*
82548527 TAACCAATTCATA
1 TAACCATTTCATA
*
82548540 TAACCACTTCATA
1 TAACCATTTCATA
*
82548553 TAATCATTTCATA
1 TAACCATTTCATA
82548566 TAACCATTT
1 TAACCATTT
82548575 TATTTCAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
TAACCATTTCATA
Found at i:82555245 original size:120 final size:120
Alignment explanation
Indices: 82555011--82555274 Score: 394
Period size: 120 Copynumber: 2.2 Consensus size: 120
82555001 CAAACCCAAG
* *
82555011 TACCTTCGGGAT-TTAG-CCGGA-TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCTGGAT
1 TACCTTC-GGATCTTAGTCC-GATTATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCTGGAT
*
82555073 ATAGTAACTAGTACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA
64 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA
* * *
82555130 TGCCTTCGGATCTTAGTCCGATTATAGTAACTAGCACAAATGCCTTC-AGATCTTAGTCC-GGTT
1 TACCTTCGGATCTTAGTCCGATTATAGCAACTAGCACAAATGCCTTCGAGA-CTTAG-CCTGGAT
82555193 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA
64 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA
*
82555250 TACCTTCGGATCTTAGTCCGGTTAT
1 TACCTTCGGATCTTAGTCCGATTAT
82555275 CATCCGAATA
Statistics
Matches: 132, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
118 4 0.03
119 14 0.11
120 112 0.85
121 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (120 bp):
TACCTTCGGATCTTAGTCCGATTATAGCAACTAGCACAAATGCCTTCGAGACTTAGCCTGGATAT
AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA
Found at i:82555265 original size:40 final size:41
Alignment explanation
Indices: 82555013--82555270 Score: 354
Period size: 40 Copynumber: 6.5 Consensus size: 41
82555003 AACCCAAGTA
* *
82555013 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* *
82555052 CCTTCGGGA-CTTAGCCTGGATATAGTAACTAGTACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
82555092 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
82555132 CCTTC-GGATCTTAGTCC-GATTATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGA-TATAGTAACTAGCACAAATG
* * *
82555172 CCTTC-AGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
82555212 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATA
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
82555252 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAGCCCGG
82555271 TTATCATCCG
Statistics
Matches: 198, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 21 0.11
40 174 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (41 bp):
CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:82556668 original size:13 final size:13
Alignment explanation
Indices: 82556652--82556679 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82556642 TTTATTATTT
82556652 TTAACACAAAATA
1 TTAACACAAAATA
82556665 TTAACACAAAATA
1 TTAACACAAAATA
82556678 TT
1 TT
82556680 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:82563402 original size:120 final size:120
Alignment explanation
Indices: 82563170--82563431 Score: 422
Period size: 120 Copynumber: 2.2 Consensus size: 120
82563160 AACCCAAGTA
* * *
82563170 CCTTCGGGAT-TTAG-CCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTC-GGATCTTAGTCCGGTTATAGAAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATA
82563233 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
65 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * * *
82563289 CCTTCGGATCTTAGTCCGGTTATAGTAACTAGCACAAATTCCTTC-AGATCTTAGTCCGGTTATA
1 CCTTCGGATCTTAGTCCGGTTATAGAAACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATATA
82563353 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
65 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
82563409 CCTTCGGATCTTAGTCCGGTTAT
1 CCTTCGGATCTTAGTCCGGTTAT
82563432 CATCCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
118 4 0.03
119 11 0.08
120 118 0.89
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (120 bp):
CCTTCGGATCTTAGTCCGGTTATAGAAACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
TAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:82563422 original size:40 final size:41
Alignment explanation
Indices: 82563170--82563427 Score: 379
Period size: 40 Copynumber: 6.5 Consensus size: 41
82563160 AACCCAAGTA
* *
82563170 CCTTCGGGAT-TTAG-CCGGATATAGAAACTCGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
82563209 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
82563249 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
82563289 CCTTC-GGATCTTAGTCCGGTTATAGTAACTAGCACAAATT
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
82563329 CCTTC-AGATCTTAGTCCGGTTATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
82563369 CCTTCGGGA-CTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
*
82563409 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAGCCCGG
82563428 TTATCATCCG
Statistics
Matches: 203, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
39 19 0.09
40 182 0.90
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.26
Consensus pattern (41 bp):
CCTTCGGGATCTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:82564846 original size:13 final size:13
Alignment explanation
Indices: 82564830--82564857 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
82564820 TTTATTATTT
82564830 TTAACACAAAATA
1 TTAACACAAAATA
82564843 TTAACACAAAATA
1 TTAACACAAAATA
82564856 TT
1 TT
82564858 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:82565243 original size:5 final size:5
Alignment explanation
Indices: 82565223--82565255 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
82565213 CACGTAAAAA
82565223 TTTAT TTT-T CTTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT -TTTAT TTTAT TTTAT TTTAT TTT
82565256 CACAATCTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 24 0.92
6 1 0.04
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:82566449 original size:22 final size:20
Alignment explanation
Indices: 82566413--82566454 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
82566403 CCATTATTGA
*
82566413 GAAATTGATGAATTAGGTTT
1 GAAATTGATGAATTAAGTTT
82566433 GAAATTGATAGATATTAAGTTT
1 GAAATTGAT-GA-ATTAAGTTT
82566455 AGATTAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.40
Consensus pattern (20 bp):
GAAATTGATGAATTAAGTTT
Found at i:82569188 original size:10 final size:11
Alignment explanation
Indices: 82569156--82569188 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
82569146 AAATGATAAG
82569156 TTGATGAAATT
1 TTGATGAAATT
*
82569167 TTCATGAAATT
1 TTGATGAAATT
82569178 TTGAT-AAATT
1 TTGATGAAATT
82569188 T
1 T
82569189 AAATTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.48
Consensus pattern (11 bp):
TTGATGAAATT
Found at i:82582755 original size:70 final size:70
Alignment explanation
Indices: 82582665--82583397 Score: 587
Period size: 70 Copynumber: 10.5 Consensus size: 70
82582655 CATGGCTCAA
** * * * *
82582665 AGGTTCAATACTGTAACCTCCAAAACAGTTAGTGCGAGCTCAAGCTCCCAGCTGTAACCCTAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
**
82582730 CTTAC
66 CTCGC
* ** * * *
82582735 AGGTTCAATACTATAGCCTCCAAAATAGTTAGCGTAAGCTTAAACTCCCAGTTGTAACCTTAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
82582800 CTCGC
66 CTCGC
** * * * * * * * *
82582805 ATATTCAATA-TCACAACCTCCAACATAGTTAGTGTGAGCTCAAACTCCCAACTGTAATCTTAAA
1 AGGTTCAATACT-ACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAG
*
82582869 GCTTGC
65 GCTCGC
* * * * * **
82582875 AGTTTCAATACCACAGTCTCCAAAATAGTTAGCGCGAGATCAAGCTCCTAGCTGTAACCCAAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
*
82582940 CTTGC
66 CTCGC
* * * * * * *
82582945 AAGTTCAATATTACAGCCTCCAAAATAGTTACCGAGAGCTCAAGCTGCCAGCTATTACCTTAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
*
82583010 CTCAC
66 CTCGC
* * * * * * * *
82583015 AGGTTCAA-AATCATAGCCCCCAAAATCAGTTAGCCCAAGCTCAAGCTCCTAGCTATAACTTTAA
1 AGGTTCAATACT-ACAGCCTCCAAAAT-AGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAA
*
82583079 GGCTCGT
64 GGCTCGC
* * * *
82583086 AGGTTCAATA-TCGCAGCCTCCAAAATAGTTAGCGCAAGCTCAAGCTCCCAACTATAACCTTAAG
1 AGGTTCAATACT-ACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAG
*
82583150 GCTCGT
65 GCTCGC
* * * * * * * *
82583156 AGGTTCAATA-T-C-GCAACTCCAAAACATTTAACGCAAGCTCAAACTCCTAGTTGTAACCCTAA
1 AGGTTCAATACTACAGC--CTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAA
* *
82583218 GACTCCC
64 GGCTCGC
* * * * * *
82583225 AGGTTCAATACTGCAACCTCCAAAATAGTTAACGTGAGCTCAAGCTCCCAACTGTAATCTTAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
* *
82583290 CTTGG
66 CTCGC
* ** * ** * * *
82583295 AGGTTTAATACCGCAGCCTCCAAAATTGTTAATGCGAGCTCAAGCTTCAAGATGTAACCTTAAGG
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
* **
82583360 TTCAT
66 CTCGC
**
82583365 AGGTTCAATACCGCAGCCTCCAAAATAGTTAGC
1 AGGTTCAATACTACAGCCTCCAAAATAGTTAGC
82583398 ATGAGCTTAC
Statistics
Matches: 529, Mismatches: 124, Indels: 20
0.79 0.18 0.03
Matches are distributed among these distances:
67 2 0.00
68 1 0.00
69 54 0.10
70 414 0.78
71 56 0.11
72 2 0.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (70 bp):
AGGTTCAATACTACAGCCTCCAAAATAGTTAGCGCGAGCTCAAGCTCCCAGCTGTAACCTTAAGG
CTCGC
Found at i:82586450 original size:25 final size:24
Alignment explanation
Indices: 82586400--82586452 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
82586390 CTGTTCAAGC
*
82586400 GAGCCATATCAAGAAGCTTAAGAA
1 GAGCCATATCAAGAAGCTCAAGAA
* * *
82586424 GAGCCTATATCAGGATGCTCAATAA
1 GAGCC-ATATCAAGAAGCTCAAGAA
82586449 GAGC
1 GAGC
82586453 TACTGTAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAAGAAGCTCAAGAA
Found at i:82591376 original size:21 final size:20
Alignment explanation
Indices: 82591338--82591376 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
82591328 ACCTTGAAAT
*
82591338 AGGGCACACGCCTGTGTGAA
1 AGGGCACACGCCTATGTGAA
*
82591358 AGGGCAACACGTCTATGTG
1 AGGGC-ACACGCCTATGTG
82591377 GTCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.18
Consensus pattern (20 bp):
AGGGCACACGCCTATGTGAA
Found at i:82592670 original size:49 final size:47
Alignment explanation
Indices: 82592555--82592783 Score: 160
Period size: 48 Copynumber: 4.7 Consensus size: 47
82592545 TGATGCCAAT
* * * * *
82592555 GCCATGTCCCAGGCATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
82592602 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAAATCAAAGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGCCGAC
* * * * *
82592651 GCCATGTCCCAAACTTGGTCTTACACT-AGCTTTCA-CATATC-TGTACTGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-C--TCATCA-ATCAAG--CCGAC
* * * * * ** *
82592701 GCCATGTCCCAAACATGGTCTTATATTGACACATCTATACGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAAT-CAAGCCGAC
* *
82592749 GCCATGTCCCAGACATGATCTTACACTGACACATC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC
82592784 TCGTAGCTGA
Statistics
Matches: 148, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
46 3 0.02
47 29 0.20
48 44 0.30
49 35 0.24
50 33 0.22
51 3 0.02
52 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
Found at i:82594648 original size:21 final size:21
Alignment explanation
Indices: 82594610--82594653 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
82594600 AAATTTAACA
* *
82594610 TCAATTTAATCCATTTCATAC
1 TCAATTTAATCCAATTCACAC
*
82594631 TCAATTTAATTCAATTCACAC
1 TCAATTTAATCCAATTCACAC
82594652 TC
1 TC
82594654 TAGGCAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.25, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAATTTAATCCAATTCACAC
Found at i:82596693 original size:20 final size:20
Alignment explanation
Indices: 82596665--82596704 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
82596655 ACCTAGGTAA
*
82596665 GAATTGATTGTTGCATGTAT
1 GAATCGATTGTTGCATGTAT
*
82596685 GAATCGATTGTTGTATGTAT
1 GAATCGATTGTTGCATGTAT
82596705 AAGGTTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (20 bp):
GAATCGATTGTTGCATGTAT
Found at i:82599869 original size:25 final size:24
Alignment explanation
Indices: 82599803--82599869 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
82599793 TTCAATCTAT
* *
82599803 TTATTTAAAAAAATTTATATAAAA
1 TTATTTGATAAAATTTATATAAAA
*
82599827 TTATTTGAT-ATATATTATAATAAAA
1 TTATTTGATAAAAT-TTAT-ATAAAA
82599852 TT-TTATGATAAAATTTAT
1 TTATT-TGATAAAATTTAT
82599870 TATTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
23 3 0.09
24 13 0.37
25 16 0.46
26 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (24 bp):
TTATTTGATAAAATTTATATAAAA
Found at i:82599883 original size:17 final size:18
Alignment explanation
Indices: 82599861--82599903 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
82599851 ATTTTATGAT
82599861 AAAATTT-ATTATTTTTA
1 AAAATTTGATTATTTTTA
82599878 AAAATTTTGATTATTTTTA
1 AAAA-TTTGATTATTTTTA
*
82599897 AATATTT
1 AAAATTT
82599904 TCAACTATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 4 0.17
18 6 0.26
19 13 0.57
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
AAAATTTGATTATTTTTA
Found at i:82599892 original size:19 final size:19
Alignment explanation
Indices: 82599868--82599904 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
82599858 GATAAAATTT
82599868 ATTATTTTTAAAAATTTTG
1 ATTATTTTTAAAAATTTTG
*
82599887 ATTATTTTTAAATATTTT
1 ATTATTTTTAAAAATTTT
82599905 CAACTATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTATTTTTAAAAATTTTG
Found at i:82600651 original size:27 final size:27
Alignment explanation
Indices: 82600613--82600665 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
82600603 TAGAGAGAGA
* *
82600613 TCAAAAAGAGAGCTCCCTATTTCTTAT
1 TCAAAAAGAGAGATCCCTATTCCTTAT
82600640 TCAAAAAGAGAGATCCCTATTCCTTA
1 TCAAAAAGAGAGATCCCTATTCCTTA
82600666 ATTCTTGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (27 bp):
TCAAAAAGAGAGATCCCTATTCCTTAT
Found at i:82602943 original size:40 final size:40
Alignment explanation
Indices: 82602899--82603069 Score: 170
Period size: 40 Copynumber: 4.3 Consensus size: 40
82602889 CGTTTGGACA
* ** *
82602899 AAAAACAG-CGCTATAGATTGAGCATTAGCAGCTTTTTTTT
1 AAAAAC-GCCGCTATAGATCGAGCATTAGCAGCGCTTTTTG
** * *
82602939 AAAAACTTCGCTATAGATCGAGAATTAG-AG-GCGTTTACTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCAGCGC-TTT-TTG
*
82602979 AAAAACGCCGCTATAGATCGAGTATTAGCAGCGCTTTTCT-
1 AAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTT-TG
* *
82603019 AAAAACGCCGCTATAGATCGAGCATTAGCGGCTCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTG
*
82603059 AAAAACTCCGC
1 AAAAACGCCGC
82603070 AAAAAAATTC
Statistics
Matches: 109, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
39 6 0.06
40 95 0.87
41 6 0.06
42 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTTG
Found at i:82603064 original size:80 final size:80
Alignment explanation
Indices: 82602899--82603046 Score: 208
Period size: 80 Copynumber: 1.9 Consensus size: 80
82602889 CGTTTGGACA
* ** * **
82602899 AAAAACAG-CGCTATAGATTGAGCATTAGCAGCTTTTTTTTAAAAACTTCGCTATAGATCGAGAA
1 AAAAAC-GCCGCTATAGATCGAGCATTAGCAGCGCTTTTCTAAAAACGCCGCTATAGATCGAGAA
82602963 TTAGAGGCGTTTACTG
65 TTAGAGGCGTTTACTG
* *
82602979 AAAAACGCCGCTATAGATCGAGTATTAGCAGCGCTTTTCTAAAAACGCCGCTATAGATCGAGCAT
1 AAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTCTAAAAACGCCGCTATAGATCGAGAAT
82603044 TAG
66 TAG
82603047 CGGCTCTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (80 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCAGCGCTTTTCTAAAAACGCCGCTATAGATCGAGAAT
TAGAGGCGTTTACTG
Found at i:82603151 original size:114 final size:114
Alignment explanation
Indices: 82603002--82603302 Score: 383
Period size: 114 Copynumber: 2.6 Consensus size: 114
82602992 TAGATCGAGT
* * *
82603002 ATTAGCAGCGCTTTTCT-AAAAACGCCGCTATAGATCGAGCATTAGCGGCTCTTTTTGAAAAACT
1 ATTAGCGGCGCTTTT-TGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTT-AAAAACG
82603066 CCGCAAAAAAATTCAGCAAGACACT-GTCGTTTTATGTT-AGCTTTAGTGGC
64 CCGCAAAAAAATTCAGCAAGA-ACTCGTCGTTTTATGTTGAGCTTTAGTGGC
* *
82603116 ATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCTAGCATTAGCGGCGCTTTTTAAAAACGCC
1 ATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAACGCC
* * ** *
82603181 GCAAAGAAATTCAGTAAGATGTCGTTGTTTTATGTTGAGCTTTAGTGGC
66 GCAAAAAAATTCAGCAAGAACTCGTCGTTTTATGTTGAGCTTTAGTGGC
* * * * * * *
82603230 ATTAGCGGTGCTTTTTGAAAAACGCAGCTAAAGATCGAGCTTTAGCAGCGCATTGTCAAAAACGC
1 ATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGC-TTTTTAAAAACGC
*
82603295 CGTAAAAA
65 CGCAAAAA
82603303 TATTTTATTT
Statistics
Matches: 162, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
112 1 0.01
113 38 0.23
114 106 0.65
115 17 0.10
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (114 bp):
ATTAGCGGCGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTAAAAACGCC
GCAAAAAAATTCAGCAAGAACTCGTCGTTTTATGTTGAGCTTTAGTGGC
Found at i:82603674 original size:15 final size:15
Alignment explanation
Indices: 82603654--82603701 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
82603644 ACTATTTTAA
82603654 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
82603669 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
82603683 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
82603698 GGTT
1 GGTT
82603702 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:82603674 original size:22 final size:21
Alignment explanation
Indices: 82603649--82603698 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
82603639 GAGTTACTAT
*
82603649 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
82603671 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
82603692 TTTAAGG
1 TTTAAGG
82603699 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:82603695 original size:21 final size:20
Alignment explanation
Indices: 82603657--82603719 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
82603647 ATTTTAAGGT
*
82603657 TTATGGATTATGGGTTTAGGG
1 TTATGGTTTAT-GGTTTAGGG
82603678 ATTATGGTTTATGGTTTAAGGG
1 -TTATGGTTTATGGTTT-AGGG
** *
82603700 TTGGGGTTTAAGGTTTAGGG
1 TTATGGTTTATGGTTTAGGG
82603720 GTTAAGGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.11
21 18 0.50
22 14 0.39
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (20 bp):
TTATGGTTTATGGTTTAGGG
Found at i:82603721 original size:21 final size:21
Alignment explanation
Indices: 82603669--82603820 Score: 92
Period size: 21 Copynumber: 7.0 Consensus size: 21
82603659 ATGGATTATG
* * *
82603669 GGTTTAGGGATTATGGTTTAT
1 GGTTTAGGGGTTAGGGTTTAA
* *
82603690 GGTTTAAGGGTTGGGGTTTAA
1 GGTTTAGGGGTTAGGGTTTAA
*
82603711 GGTTTAGGGGTTAAGGGTTAAA
1 GGTTTAGGGGTT-AGGGTTTAA
82603733 GG-TTAGGGGTTTATGGG-TTAA
1 GGTTTAGGGG-TTA-GGGTTTAA
* * *
82603754 TGTGATAGGGGTTAGGGGTTTAGG
1 GGT-TTAGGGGTTA-GGGTTTA-A
* ***
82603778 GGTTTAGGAGTTTAGGGGACAA
1 GGTTTAGG-GGTTAGGGTTTAA
*
82603800 GGGTTAGGGGTTTAGGGTTTA
1 GGTTTAGGGG-TTAGGGTTTA
82603821 GGGGAATTAG
Statistics
Matches: 97, Mismatches: 25, Indels: 17
0.70 0.18 0.12
Matches are distributed among these distances:
21 40 0.41
22 34 0.35
23 17 0.18
24 6 0.06
ACGTcount: A:0.20, C:0.01, G:0.43, T:0.36
Consensus pattern (21 bp):
GGTTTAGGGGTTAGGGTTTAA
Found at i:82603727 original size:8 final size:8
Alignment explanation
Indices: 82603690--82603824 Score: 67
Period size: 7 Copynumber: 18.2 Consensus size: 8
82603680 TATGGTTTAT
*
82603690 GGTTTAAG
1 GGTTTAGG
82603698 GG-TT-GG
1 GGTTTAGG
*
82603704 GGTTTA-A
1 GGTTTAGG
82603711 GGTTTAGG
1 GGTTTAGG
*
82603719 GG-TTAAG
1 GGTTTAGG
**
82603726 GG-TTAAA
1 GGTTTAGG
82603733 GG-TTAGG
1 GGTTTAGG
*
82603740 GGTTTATG
1 GGTTTAGG
* *
82603748 GGTTAATG
1 GGTTTAGG
* *
82603756 TGAT-AGG
1 GGTTTAGG
82603763 GG-TTAGG
1 GGTTTAGG
82603770 GGTTTAGG
1 GGTTTAGG
82603778 GGTTTAGG
1 GGTTTAGG
*
82603786 AGTTTAGG
1 GGTTTAGG
** *
82603794 GG-ACAAG
1 GGTTTAGG
82603801 GG-TTAGG
1 GGTTTAGG
82603808 GGTTTA-G
1 GGTTTAGG
82603815 GGTTTAGG
1 GGTTTAGG
82603823 GG
1 GG
82603825 AATTAGTGTG
Statistics
Matches: 98, Mismatches: 21, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
6 4 0.04
7 50 0.51
8 44 0.45
ACGTcount: A:0.20, C:0.01, G:0.46, T:0.33
Consensus pattern (8 bp):
GGTTTAGG
Found at i:82603772 original size:22 final size:21
Alignment explanation
Indices: 82603715--82603773 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
82603705 GTTTAAGGTT
*
82603715 TAGGGGTTAAGGGTTAAAGGT
1 TAGGGGTTAAGGGTTAAAGGA
* *
82603736 TAGGGGTTTATGGGTTAATGTGA
1 TAGGGG-TTAAGGGTTAAAG-GA
*
82603759 TAGGGGTTAGGGGTT
1 TAGGGGTTAAGGGTT
82603774 TAGGGGTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 6 0.19
22 19 0.59
23 7 0.22
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.34
Consensus pattern (21 bp):
TAGGGGTTAAGGGTTAAAGGA
Found at i:82603780 original size:38 final size:38
Alignment explanation
Indices: 82603735--82603822 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
82603725 GGGTTAAAGG
* * * *
82603735 TTAGGGGTTTATGG-GTTAATGTGATAGGGGTTAGGGGT
1 TTAGGGGTTTA-GGAGTTAAGGGGACAAGGGTTAGGGGT
*
82603773 TTAGGGGTTTAGGAGTTTAGGGGACAAGGGTTAGGGGT
1 TTAGGGGTTTAGGAGTTAAGGGGACAAGGGTTAGGGGT
82603811 TTA-GGGTTTAGG
1 TTAGGGGTTTAGG
82603823 GGAATTAGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
37 11 0.25
38 33 0.75
ACGTcount: A:0.19, C:0.01, G:0.45, T:0.34
Consensus pattern (38 bp):
TTAGGGGTTTAGGAGTTAAGGGGACAAGGGTTAGGGGT
Found at i:82604014 original size:14 final size:14
Alignment explanation
Indices: 82603997--82604048 Score: 77
Period size: 14 Copynumber: 3.6 Consensus size: 14
82603987 ATTATTATAG
82603997 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
**
82604011 TTTAGGGCATATGA
1 TTTAGGGTTTATGA
82604025 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
82604039 TTTAAGGGTT
1 TTT-AGGGTT
82604049 GGGGTTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
14 27 0.82
15 6 0.18
ACGTcount: A:0.23, C:0.02, G:0.29, T:0.46
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:82604084 original size:7 final size:7
Alignment explanation
Indices: 82604074--82604169 Score: 61
Period size: 7 Copynumber: 13.1 Consensus size: 7
82604064 GGGGGTTAGT
82604074 GGTTAAG
1 GGTTAAG
*
82604081 GGTTATG
1 GGTTAAG
82604088 GGTTAAG
1 GGTTAAG
* *
82604095 GGATATG
1 GGTTAAG
*
82604102 GGTTTTAG
1 GG-TTAAG
82604110 GGTTAAAG
1 GGTT-AAG
**
82604118 GGACAAG
1 GGTTAAG
82604125 GGTT-AG
1 GGTTAAG
82604131 GGATTTAAG
1 GG--TTAAG
82604140 GGTTATAG
1 GGTTA-AG
82604148 GGTTAAG
1 GGTTAAG
*
82604155 AGTT-AG
1 GGTTAAG
82604161 GGTTTAAG
1 GG-TTAAG
82604169 G
1 G
82604170 TTTAGAAGAT
Statistics
Matches: 67, Mismatches: 14, Indels: 15
0.70 0.15 0.16
Matches are distributed among these distances:
6 7 0.10
7 36 0.54
8 20 0.30
9 4 0.06
ACGTcount: A:0.27, C:0.01, G:0.41, T:0.31
Consensus pattern (7 bp):
GGTTAAG
Found at i:82604085 original size:14 final size:14
Alignment explanation
Indices: 82604074--82604169 Score: 70
Period size: 15 Copynumber: 6.6 Consensus size: 14
82604064 GGGGGTTAGT
82604074 GGTTAAGGGTTATG
1 GGTTAAGGGTTATG
*
82604088 GGTTAAGGGATATG
1 GGTTAAGGGTTATG
* *
82604102 GGTTTTAGGGTTAAAG
1 GG-TTAAGGGTT-ATG
**
82604118 GGACAAGGGTTA-G
1 GGTTAAGGGTTATG
82604131 GGATTTAAGGGTTATAG
1 GG--TTAAGGGTTAT-G
*
82604148 GGTTAAGAGTTA-G
1 GGTTAAGGGTTATG
82604161 GGTTTAAGG
1 GG-TTAAGG
82604170 TTTAGAAGAT
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
13 6 0.09
14 21 0.33
15 30 0.47
16 4 0.06
17 3 0.05
ACGTcount: A:0.27, C:0.01, G:0.41, T:0.31
Consensus pattern (14 bp):
GGTTAAGGGTTATG
Found at i:82604140 original size:15 final size:14
Alignment explanation
Indices: 82604066--82604174 Score: 64
Period size: 14 Copynumber: 7.5 Consensus size: 14
82604056 AAGATTTAGG
82604066 GGGTTAGTGG-TTAA
1 GGGTTAG-GGTTTAA
82604080 GGGTTATGGG-TTAA
1 GGGTTA-GGGTTTAA
* *
82604094 GGGATATGGGTTTTA
1 GGGTTA-GGGTTTAA
**
82604109 GGGTTAAAGGG-ACAA
1 GGGTT--AGGGTTTAA
82604124 GGGTTAGGGATTTAA
1 GGGTTAGGG-TTTAA
82604139 GGGTTATAGGG-TTAA
1 GGG-T-TAGGGTTTAA
*
82604154 GAGTTAGGGTTTAA
1 GGGTTAGGGTTTAA
*
82604168 GGTTTAG
1 GGGTTAG
82604175 AAGATATGTG
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
13 9 0.12
14 31 0.41
15 25 0.33
16 4 0.05
17 6 0.08
ACGTcount: A:0.26, C:0.01, G:0.40, T:0.33
Consensus pattern (14 bp):
GGGTTAGGGTTTAA
Found at i:82604142 original size:30 final size:29
Alignment explanation
Indices: 82604101--82604169 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
82604091 TAAGGGATAT
* *
82604101 GGGTTTTAGGGTTAAAGGGACAAGGGTTA
1 GGGTTTAAGGGTTAAAGGGACAAGAGTTA
* **
82604130 GGGATTTAAGGGTTATAGGGTTAAGAGTTA
1 GGG-TTTAAGGGTTAAAGGGACAAGAGTTA
82604160 GGGTTTAAGG
1 GGGTTTAAGG
82604170 TTTAGAAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.28, C:0.01, G:0.41, T:0.30
Consensus pattern (29 bp):
GGGTTTAAGGGTTAAAGGGACAAGAGTTA
Found at i:82604188 original size:81 final size:82
Alignment explanation
Indices: 82604096--82604245 Score: 207
Period size: 81 Copynumber: 1.8 Consensus size: 82
82604086 TGGGTTAAGG
*
82604096 GATATGGGTTTTAGGGTTAAAGGGACAAGGGTT-AGGGATTTAAGGGTTATA-GGGTTAAGAG-T
1 GATATGGGTTTTAGGGTTAAAGGGACAAGGGTTAAAGG-TTTAAGGGTTA-AGGGGTTAAGAGTT
82604158 TAGGGTTTAAGGTTTAGAA
64 TAGGGTTTAAGGTTTAGAA
* * * * *
82604177 GATATGTGTTTTAGGGTTAAGGGGACATGGGTTAAAGGTTTAGGGGTTAAGGGGTTAGGAGTTTA
1 GATATGGGTTTTAGGGTTAAAGGGACAAGGGTTAAAGGTTTAAGGGTTAAGGGGTTAAGAGTTTA
82604242 GGGT
66 GGGT
82604246 AATTAGTGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
80 1 0.02
81 49 0.82
82 10 0.17
ACGTcount: A:0.27, C:0.01, G:0.39, T:0.33
Consensus pattern (82 bp):
GATATGGGTTTTAGGGTTAAAGGGACAAGGGTTAAAGGTTTAAGGGTTAAGGGGTTAAGAGTTTA
GGGTTTAAGGTTTAGAA
Found at i:82604373 original size:17 final size:17
Alignment explanation
Indices: 82604347--82604390 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
82604337 AATCTATATA
*
82604347 TTAAATAATTTCAAATT
1 TTAAAAAATTTCAAATT
* *
82604364 TTAAAGAA-TTCATATT
1 TTAAAAAATTTCAAATT
82604380 TTAAAAAATTT
1 TTAAAAAATTT
82604391 TAAAGAATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (17 bp):
TTAAAAAATTTCAAATT
Found at i:82604380 original size:16 final size:16
Alignment explanation
Indices: 82604356--82604415 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
82604346 ATTAAATAAT
82604356 TTCAAATTTTAAAGAA
1 TTCAAATTTTAAAGAA
*
82604372 TTCATATTTT--A-AA
1 TTCAAATTTTAAAGAA
82604385 ---AAATTTTAAAGAA
1 TTCAAATTTTAAAGAA
*
82604398 TTCAAATTTTAAAAAA
1 TTCAAATTTTAAAGAA
82604414 TT
1 TT
82604416 TTCAAGATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
10 6 0.17
12 1 0.03
13 4 0.11
14 1 0.03
16 23 0.66
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (16 bp):
TTCAAATTTTAAAGAA
Found at i:82604441 original size:26 final size:26
Alignment explanation
Indices: 82604359--82604434 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
82604349 AAATAATTTC
*
82604359 AAATTTTAAAGAATTCATATTTTAAA
1 AAATTTTAAAGAATTCAAATTTTAAA
82604385 AAATTTTAAAGAATTCAAATTTTAAA
1 AAATTTTAAAGAATTCAAATTTTAAA
* *
82604411 AAATTTTCAAGATTTCAAATTTTA
1 AAATTTTAAAGAATTCAAATTTTA
82604435 TCTAATTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (26 bp):
AAATTTTAAAGAATTCAAATTTTAAA
Found at i:82604578 original size:18 final size:17
Alignment explanation
Indices: 82604541--82604575 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
82604531 TATATAGCTG
82604541 ATTGTTTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
82604558 ATTG-TTTTTAATTTAT
1 ATTGTTTTTTAATTTAT
82604574 AT
1 AT
82604576 ATTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (17 bp):
ATTGTTTTTTAATTTAT
Found at i:82606787 original size:24 final size:24
Alignment explanation
Indices: 82606760--82606806 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
82606750 ATTATTATTG
* *
82606760 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCATCCGTTTTATCAC
*
82606784 AAATATTATCATCTGTTTTATCA
1 AAATATTATCATCCGTTTTATCA
82606807 TTTAAGTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (24 bp):
AAATATTATCATCCGTTTTATCAC
Found at i:82607299 original size:20 final size:21
Alignment explanation
Indices: 82607253--82607305 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
82607243 TTTTTAAAAA
*
82607253 AAAATTAAATAAAAATATATT
1 AAAATTAAATAAAAATACATT
82607274 ATAAATT-AA-AAAAATACATT
1 A-AAATTAAATAAAAATACATT
82607294 GAAAATTGAAAT
1 -AAAATT-AAAT
82607306 GATATATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
20 15 0.58
21 4 0.15
22 7 0.27
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
AAAATTAAATAAAAATACATT
Found at i:82607665 original size:51 final size:52
Alignment explanation
Indices: 82607622--82607725 Score: 165
Period size: 51 Copynumber: 2.0 Consensus size: 52
82607612 CTTATATACC
82607622 TTACATAATACATAAATATATATCATATAATAACTT-CATAACTTACAAAAA
1 TTACATAATACATAAATATATATCATATAATAACTTACATAACTTACAAAAA
* * * *
82607673 TTACATAATACATAAATATATATCATATCATGACTTACATACCTTACATAAA
1 TTACATAATACATAAATATATATCATATAATAACTTACATAACTTACAAAAA
82607725 T
1 T
82607726 GTATATCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
51 34 0.71
52 14 0.29
ACGTcount: A:0.49, C:0.15, G:0.01, T:0.35
Consensus pattern (52 bp):
TTACATAATACATAAATATATATCATATAATAACTTACATAACTTACAAAAA
Found at i:82607723 original size:36 final size:36
Alignment explanation
Indices: 82607681--82607831 Score: 248
Period size: 36 Copynumber: 4.2 Consensus size: 36
82607671 AATTACATAA
* *
82607681 TACATAAATATATATCATATCATGACTTACATACCT
1 TACATAAATGTATATCATATCATAACTTACATACCT
*
82607717 TACATAAATGTATATCATATCATAACTTACATACTT
1 TACATAAATGTATATCATATCATAACTTACATACCT
* *
82607753 TACATAAATGTATATCGTATCATAACTTACATATCT
1 TACATAAATGTATATCATATCATAACTTACATACCT
*
82607789 TACATAAATGTATATCATATCATAACTTACATAACT
1 TACATAAATGTATATCATATCATAACTTACATACCT
82607825 TACATAA
1 TACATAA
82607832 CTTACAAAAC
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 107 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.37
Consensus pattern (36 bp):
TACATAAATGTATATCATATCATAACTTACATACCT
Found at i:82607790 original size:9 final size:9
Alignment explanation
Indices: 82607773--82607863 Score: 87
Period size: 9 Copynumber: 10.1 Consensus size: 9
82607763 TATATCGTAT
82607773 CATAACTTA
1 CATAACTTA
*
82607782 CATATCTTA
1 CATAACTTA
*
82607791 CATAAATGT-
1 CATAACT-TA
* *
82607800 -ATATCATA
1 CATAACTTA
82607808 TCATAACTTA
1 -CATAACTTA
82607818 CATAACTTA
1 CATAACTTA
82607827 CATAACTTA
1 CATAACTTA
*
82607836 CAAAACTTA
1 CATAACTTA
*
82607845 CACAACTTA
1 CATAACTTA
*
82607854 CTTAACTTA
1 CATAACTTA
82607863 C
1 C
82607864 GTAATACATA
Statistics
Matches: 66, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
7 1 0.02
8 3 0.05
9 55 0.83
10 7 0.11
ACGTcount: A:0.43, C:0.22, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:82607852 original size:72 final size:72
Alignment explanation
Indices: 82607705--82607863 Score: 198
Period size: 72 Copynumber: 2.2 Consensus size: 72
82607695 TCATATCATG
* * *
82607705 ACTTACATACCTTACATAAATGTATATCATATCATAACTTACATACTTTACATAAATGTATATCG
1 ACTTACATAACTTACATAAATGTATATCATATCATAACTTACATACTTTACATAAATGTAAAACG
*
82607770 TATCATA
66 TATCACA
* *
82607777 ACTTACATATCTTACATAAATGTATATCATATCATAACTTACATAAC-TTACATAACT-TACAAA
1 ACTTACATAACTTACATAAATGTATATCATATCATAACTTACAT-ACTTTACATAAATGT--AAA
*
82607840 ACTTA-CACA
63 ACGTATCACA
*
82607849 ACTTACTTAACTTAC
1 ACTTACATAACTTAC
82607864 GTAATACATA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
71 1 0.01
72 68 0.89
73 7 0.09
ACGTcount: A:0.42, C:0.20, G:0.03, T:0.36
Consensus pattern (72 bp):
ACTTACATAACTTACATAAATGTATATCATATCATAACTTACATACTTTACATAAATGTAAAACG
TATCACA
Found at i:82609658 original size:12 final size:12
Alignment explanation
Indices: 82609643--82609667 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82609633 AGATCGAGGA
82609643 ATGAATCTGATG
1 ATGAATCTGATG
82609655 ATGAATCTGATG
1 ATGAATCTGATG
82609667 A
1 A
82609668 AGAGGATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATGAATCTGATG
Found at i:82613121 original size:43 final size:43
Alignment explanation
Indices: 82613052--82613160 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 43
82613042 ATTTATTTAA
* *
82613052 AAAAACACCGCTAAAGATCATGACCTTTAGTGG-AGCTTTTCCC
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCA-CTTTTCCC
* * *
82613095 ACAAATGCCGCTAAAGATCATTACCTTTAGCGGCACTTTTCCC
1 AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTCCC
*
82613138 AAAAACGCCACTAAATG-TCATGA
1 AAAAACGCCGCTAAA-GATCATGA
82613161 AATTTAAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
43 53 0.96
44 2 0.04
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTCCC
Found at i:82613295 original size:11 final size:11
Alignment explanation
Indices: 82613279--82613307 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
82613269 CATAAAAATT
82613279 TTCTATTAAAA
1 TTCTATTAAAA
82613290 TTCTATTAAAA
1 TTCTATTAAAA
82613301 TTC-ATTA
1 TTCTATTA
82613308 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:82613368 original size:35 final size:36
Alignment explanation
Indices: 82613328--82613402 Score: 91
Period size: 35 Copynumber: 2.1 Consensus size: 36
82613318 TTTTCTATTA
*
82613328 AAATTTTAACTTTAAAA-CTAAATAAAAAAATTAAT
1 AAATTTTAAATTTAAAATCTAAATAAAAAAATTAAT
* * * *
82613363 GAA-TTTAAATTTAAAATTTAAATTAATAAATTAAT
1 AAATTTTAAATTTAAAATCTAAATAAAAAAATTAAT
82613398 AAATT
1 AAATT
82613403 AATAACACAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
34 12 0.38
35 19 0.59
36 1 0.03
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (36 bp):
AAATTTTAAATTTAAAATCTAAATAAAAAAATTAAT
Found at i:82613394 original size:8 final size:8
Alignment explanation
Indices: 82613381--82613407 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
82613371 ATTTAAAATT
82613381 TAAATTAA
1 TAAATTAA
82613389 TAAATTAA
1 TAAATTAA
82613397 TAAATTAA
1 TAAATTAA
82613405 TAA
1 TAA
82613408 CACAATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAAATTAA
Found at i:82613396 original size:13 final size:13
Alignment explanation
Indices: 82613355--82613407 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 13
82613345 CTAAATAAAA
82613355 AAATTAATGAATTT
1 AAATTAAT-AATTT
82613369 AAATTTAA-AATTT
1 AAA-TTAATAATTT
82613382 AAATTAATAAATTAAT
1 AAATTAAT-AATT--T
82613398 AAATTAATAA
1 AAATTAATAA
82613408 CACAATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 4 0.12
13 8 0.24
14 7 0.21
15 6 0.18
16 9 0.26
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (13 bp):
AAATTAATAATTT
Found at i:82615045 original size:46 final size:46
Alignment explanation
Indices: 82614992--82615128 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
82614982 TATATATACA
* * * *
82614992 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
82615038 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
82615084 TATCTCATACACATTTCGCATTAACCATTCGGCCTAACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
82615129 ATACATATTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:82615162 original size:47 final size:47
Alignment explanation
Indices: 82615108--82615292 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
82615098 TTCGCATTAA
* * * ** *
82615108 CCATTCGGCCTAACCACATATATACATATTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
* * *
82615155 CCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
82615202 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
1 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
*
82615249 CCATTCGGCCTTATCACACATACGCATGTTCCCATTCATCACAT
1 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
82615293 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGG
Found at i:82615293 original size:23 final size:23
Alignment explanation
Indices: 82615218--82615293 Score: 59
Period size: 23 Copynumber: 3.3 Consensus size: 23
82615208 GGCCTTATCA
*
82615218 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCCCATTCAT
** *
82615241 CACATTGGCCA--TTCGGCCTTATCA-
1 CACATACG-CATGTTC--CCAT-TCAT
82615265 CACATACGCATGTTCCCATTCAT
1 CACATACGCATGTTCCCATTCAT
82615288 CACATA
1 CACATA
82615294 AAATCCTAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 6 0.15
23 17 0.44
24 10 0.26
25 6 0.15
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCCCATTCAT
Found at i:82617366 original size:34 final size:34
Alignment explanation
Indices: 82617328--82617405 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 34
82617318 CATTTGACCG
82617328 AATGAACATTTATCAAATGAAAATTCAACTAAAC
1 AATGAACATTTATCAAATGAAAATTCAACTAAAC
82617362 AATGAACATTTATCAAATGAAAATTCAACTAAAC
1 AATGAACATTTATCAAATGAAAATTCAACTAAAC
*
82617396 AA-CAACATTT
1 AATGAACATTT
82617406 TTCTTTCTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
33 7 0.16
34 36 0.84
ACGTcount: A:0.53, C:0.15, G:0.05, T:0.27
Consensus pattern (34 bp):
AATGAACATTTATCAAATGAAAATTCAACTAAAC
Found at i:82617367 original size:19 final size:19
Alignment explanation
Indices: 82617343--82617397 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
82617333 ACATTTATCA
82617343 AATGAAAATTCAACTAAAC
1 AATGAAAATTCAACTAAAC
* * *
82617362 AATGAACATT-TA-T-CA-
1 AATGAAAATTCAACTAAAC
82617377 AATGAAAATTCAACTAAAC
1 AATGAAAATTCAACTAAAC
82617396 AA
1 AA
82617398 CAACATTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
15 9 0.35
16 2 0.08
17 2 0.08
18 2 0.08
19 11 0.42
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (19 bp):
AATGAAAATTCAACTAAAC
Found at i:82623188 original size:19 final size:17
Alignment explanation
Indices: 82623156--82623195 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 17
82623146 TATTGCTTAA
82623156 TTTTAAATTTTTTTCAT
1 TTTTAAATTTTTTTCAT
82623173 TTTTAACATATTTTTTCAT
1 TTTTAA-AT-TTTTTTCAT
82623192 TTTT
1 TTTT
82623196 TTTCAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.29
18 2 0.10
19 13 0.62
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTAAATTTTTTTCAT
Found at i:82623363 original size:7 final size:7
Alignment explanation
Indices: 82623332--82623371 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
82623322 TTTTTTTATC
82623332 TTTTAAT
1 TTTTAAT
*
82623339 TTTAAAT
1 TTTTAAT
*
82623346 TTTAAAT
1 TTTTAAT
82623353 TTTTAATT
1 TTTTAA-T
82623361 TTTTAAT
1 TTTTAAT
82623368 TTTT
1 TTTT
82623372 TTGAAGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTAAT
Found at i:82623391 original size:10 final size:9
Alignment explanation
Indices: 82623301--82623392 Score: 50
Period size: 8 Copynumber: 10.0 Consensus size: 9
82623291 ATATTAAATA
82623301 TTAATTTTT
1 TTAATTTTT
*
82623310 TT-AGTTTT
1 TTAATTTTT
*
82623318 TTAGTTTTT
1 TTAATTTTT
*
82623327 TT-A-TCTT
1 TTAATTTTT
82623334 TTAATTTTAAATT
1 TTAA-TTT---TT
*
82623347 TTAA-ATTT
1 TTAATTTTT
82623355 TTAA-TTTT
1 TTAATTTTT
82623363 TTAATTTTT
1 TTAATTTTT
82623372 TTGAAGTTTTT
1 TT-AA-TTTTT
82623383 TATAATTTTT
1 T-TAATTTTT
82623393 AAATTAACAT
Statistics
Matches: 64, Mismatches: 8, Indels: 21
0.69 0.09 0.23
Matches are distributed among these distances:
7 5 0.08
8 21 0.33
9 14 0.22
10 8 0.12
11 9 0.14
12 1 0.02
13 6 0.09
ACGTcount: A:0.24, C:0.01, G:0.04, T:0.71
Consensus pattern (9 bp):
TTAATTTTT
Found at i:82624210 original size:15 final size:15
Alignment explanation
Indices: 82624183--82624220 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
82624173 TGCCCTTAAA
82624183 CCATAAA-CCATAAT
1 CCATAAACCCATAAT
*
82624197 CCCTAAACCCATAAT
1 CCATAAACCCATAAT
82624212 CCATAAACC
1 CCATAAACC
82624221 TTAAAATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
CCATAAACCCATAAT
Found at i:82624225 original size:22 final size:21
Alignment explanation
Indices: 82624176--82624283 Score: 74
Period size: 22 Copynumber: 5.0 Consensus size: 21
82624166 AAACTCCTGC
*
82624176 CCTTAAACCATAAACCATAAT
1 CCTTAAACCATAAACCATAAA
* *
82624197 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAAACCATAAA
** ** *
82624219 CCTTAAAATAGTAATTCATACA
1 CCTTAAACCA-TAAACCATAAA
* *
82624241 CTTTAAATCC-TAAACCATATA
1 CCTTAAA-CCATAAACCATAAA
* *
82624262 CCCTAAACCATAAACCCTAAA
1 CCTTAAACCATAAACCATAAA
82624283 C
1 C
82624284 TATAATGATA
Statistics
Matches: 65, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
20 2 0.03
21 30 0.46
22 33 0.51
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (21 bp):
CCTTAAACCATAAACCATAAA
Found at i:82624268 original size:14 final size:14
Alignment explanation
Indices: 82624244--82624288 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
82624234 TCATACACTT
*
82624244 TAAATCCTAAACCA
1 TAAACCCTAAACCA
*
82624258 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
82624272 TAAACCCTAAACTA
1 TAAACCCTAAACCA
82624286 TAA
1 TAA
82624289 TGATAATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:82624394 original size:7 final size:7
Alignment explanation
Indices: 82624383--82624488 Score: 52
Period size: 7 Copynumber: 14.9 Consensus size: 7
82624373 CTAATTAATC
*
82624383 TAAACCC
1 TAAACCA
82624390 TAAACTCA
1 TAAAC-CA
*
82624398 TAATCCA
1 TAAACCA
*
82624405 TAAACCC
1 TAAACCA
82624412 TAAACCA
1 TAAACCA
* *
82624419 TAAATCT
1 TAAACCA
*
82624426 TAAAACA
1 TAAACCA
*
82624433 TAAACCC
1 TAAACCA
*
82624440 TGAACCA
1 TAAACCA
* *
82624447 TGAACAA
1 TAAACCA
* *
82624454 CTAACCCT
1 -TAAACCA
*
82624462 TAACCCA
1 TAAACCA
82624469 T-AACACA
1 TAAAC-CA
*
82624476 TAAACCT
1 TAAACCA
82624483 TAAACC
1 TAAACC
82624489 CCAACCCTTA
Statistics
Matches: 74, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
6 2 0.03
7 61 0.82
8 11 0.15
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:82624421 original size:14 final size:14
Alignment explanation
Indices: 82624382--82624447 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
82624372 ACTAATTAAT
*
82624382 CTAAACCCTAAACTC
1 CTAAACCATAAAC-C
* *
82624397 ATAATCCATAAACC
1 CTAAACCATAAACC
*
82624411 CTAAACCATAAATC
1 CTAAACCATAAACC
* *
82624425 TTAAAACATAAACC
1 CTAAACCATAAACC
*
82624439 CTGAACCAT
1 CTAAACCAT
82624448 GAACAACTAA
Statistics
Matches: 39, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
14 29 0.74
15 10 0.26
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:82624547 original size:22 final size:22
Alignment explanation
Indices: 82624510--82624592 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
82624500 ATCACCCTTA
* *
82624510 AACCATAATCCCTAAACCTATT
1 AACCATAAACCTTAAACCTATT
* * *
82624532 ATCCATAAACCTTAAA-ATAGT
1 AACCATAAACCTTAAACCTATT
*
82624553 AACTCATAAACATTAAACCT-TT
1 AAC-CATAAACCTTAAACCTATT
* *
82624575 AACCATATACCGTAAACC
1 AACCATAAACCTTAAACC
82624593 CTAAACTATA
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
21 17 0.36
22 29 0.62
23 1 0.02
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.27
Consensus pattern (22 bp):
AACCATAAACCTTAAACCTATT
Found at i:82624913 original size:40 final size:40
Alignment explanation
Indices: 82624833--82624932 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
82624823 ATTATTTTGT
** *
82624833 GGCGTTTTTCAAAAAATGCCACTAAAGATCAAGCATTAGC
1 GGCGTTTTTCAAAAAGCGCCACTAAAGATCAACCATTAGC
* **
82624873 GGCGTTTTTCAAAAAGCGCCACTAAAGGTGTACC-TATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAAAGATCAACCAT-TAGC
82624913 GGCGTTTCTT-AAAAAGCGCC
1 GGCGTTT-TTCAAAAAGCGCC
82624933 GTTAATACTC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 1 0.02
40 49 0.94
41 2 0.04
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAAAGATCAACCATTAGC
Found at i:82625041 original size:75 final size:75
Alignment explanation
Indices: 82624945--82625126 Score: 231
Period size: 75 Copynumber: 2.4 Consensus size: 75
82624935 TAATACTCGA
* * * *
82624945 TCTTTAGCGGTGTTTTTAAAAAGCGCCATTAAAGCCACTAAAAGCTCAATACAAAATGACGACGT
1 TCTTTTGCGGCGTTTTTAAAAAGCGCCACTAAAGCCACTAAAAGCTCAATACAAAACGACGACGT
*
82625010 TTTGCAAAAT
66 TGTGCAAAAT
* * * *
82625020 TCTTTTGCGGCGTTTTTAAAAAGCACCGCTAAAGCCACTAAAGGCTCAATACAAAACGACGGCGT
1 TCTTTTGCGGCGTTTTTAAAAAGCGCCACTAAAGCCACTAAAAGCTCAATACAAAACGACGACGT
**
82625085 TGTGTTAAAT
66 TGTGCAAAAT
* *
82625095 T-TTTTGCGGCGTTTTTAGTAAAGCGCCGCTAA
1 TCTTTTGCGGCGTTTTTA-AAAAGCGCCACTAA
82625127 TGCTCGTTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
74 16 0.17
75 77 0.83
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (75 bp):
TCTTTTGCGGCGTTTTTAAAAAGCGCCACTAAAGCCACTAAAAGCTCAATACAAAACGACGACGT
TGTGCAAAAT
Found at i:82626111 original size:43 final size:43
Alignment explanation
Indices: 82626024--82626295 Score: 217
Period size: 43 Copynumber: 6.3 Consensus size: 43
82626014 AGAACATATA
* * * * * *
82626024 TTTAGTGGCGTTTGCAAAAAAAGCGTTGCT-TAGAGTCACATTC
1 TTTAGCGGCGTTTGCAAAAAAAGTGCTGCTAAAG-GCCACGTTC
* * * *
82626067 TTTAGCGGCGTTTGCGATAAAAGTGCTGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGCAAAAAAAGTGCTGCTAAAGGCCACGTTC
* * * *
82626110 TTTAACAGCGTTTGTAAAAAAAGTG-T-CGTGAAAGGCCACTTTC
1 TTTAGCGGCGTTTGCAAAAAAAGTGCTGC-T-AAAGGCCACGTTC
* * * * *
82626153 TTTAGTGGCGTTTGTAAAAAAAAGCGCCGCGAAAGGCCACGTTC
1 TTTAGCGGCGTTTG-CAAAAAAAGTGCTGCTAAAGGCCACGTTC
* * *
82626197 TTTACCGGCGTTTGTAAAAAAAGTGCTGCTAAAGGCCACGTTT
1 TTTAGCGGCGTTTGCAAAAAAAGTGCTGCTAAAGGCCACGTTC
* * * * ***
82626240 TTTAGCGGCATTTGTACAAAAAGTGCCGCTAAAGATAACGTTC
1 TTTAGCGGCGTTTGCAAAAAAAGTGCTGCTAAAGGCCACGTTC
*
82626283 TTTAGCGGTGTTT
1 TTTAGCGGCGTTT
82626296 TCAAGACAGC
Statistics
Matches: 182, Mismatches: 41, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 143 0.79
44 35 0.19
46 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCAAAAAAAGTGCTGCTAAAGGCCACGTTC
Found at i:82626209 original size:87 final size:86
Alignment explanation
Indices: 82626097--82626261 Score: 217
Period size: 87 Copynumber: 1.9 Consensus size: 86
82626087 AAGTGCTGCT
* * *
82626097 AAAGGTCATGTTCTTTAACAGCGTTTGTAAAAAAAGTGTCGTG-AAAGGCCAC-TTTCTTTAGTG
1 AAAGGCCACGTTCTTTAACAGCGTTTGTAAAAAAAGTG-C-TGCAAAGGCCACGTTT-TTTAGCG
*
82626160 GCGTTTGTAAAAAAAAGCGCCGCG
63 GCATTTGTAAAAAAAAGCGCCGCG
* *
82626184 AAAGGCCACGTTCTTTACCGGCGTTTGTAAAAAAAGTGCTGCTAAAGGCCACGTTTTTTAGCGGC
1 AAAGGCCACGTTCTTTAACAGCGTTTGTAAAAAAAGTGCTGC-AAAGGCCACGTTTTTTAGCGGC
*
82626249 ATTTGTACAAAAA
65 ATTTGTAAAAAAA
82626262 GTGCCGCTAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
85 2 0.03
86 1 0.01
87 62 0.91
88 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (86 bp):
AAAGGCCACGTTCTTTAACAGCGTTTGTAAAAAAAGTGCTGCAAAGGCCACGTTTTTTAGCGGCA
TTTGTAAAAAAAAGCGCCGCG
Found at i:82626323 original size:42 final size:41
Alignment explanation
Indices: 82626264--82626380 Score: 108
Period size: 42 Copynumber: 2.8 Consensus size: 41
82626254 TACAAAAAGT
* * * *
82626264 GCCGCTAAAGATAACGTTCTTTAGCGGTGTTTTCAAGACAGC
1 GCCGCTAAAG-TCACGTTCTTTAGCGGAGTTTTCAAGAAAAC
* **
82626306 GCCGCTGAAAGTCACGTTCTTTAGCAGAGTTTTCTTGAAAAC
1 GCCGCT-AAAGTCACGTTCTTTAGCGGAGTTTTCAAGAAAAC
** * *
82626348 GCAACTAAAAGTCATGTTCTTTAGCGGCGTTTT
1 GCCGCT-AAAGTCACGTTCTTTAGCGGAGTTTT
82626381 TTTACATAAA
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 57 0.93
43 4 0.07
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (41 bp):
GCCGCTAAAGTCACGTTCTTTAGCGGAGTTTTCAAGAAAAC
Found at i:82626896 original size:43 final size:43
Alignment explanation
Indices: 82626834--82626939 Score: 158
Period size: 43 Copynumber: 2.5 Consensus size: 43
82626824 AAAAGCGCTG
* *
82626834 CTAAAGAACGTGACCTTTAGTGGCACTTTTCACACAAACGCCT
1 CTAAAGAACGTGACCTTTAGTGCCACTTTTCACACAAACGCCA
* * * *
82626877 CTAAAGAATGTGACATTTAGTGCCGCTTTTCACATAAACGCCA
1 CTAAAGAACGTGACCTTTAGTGCCACTTTTCACACAAACGCCA
82626920 CTAAAGAACGTGACCTTTAG
1 CTAAAGAACGTGACCTTTAG
82626940 CGCTGCTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
CTAAAGAACGTGACCTTTAGTGCCACTTTTCACACAAACGCCA
Found at i:82626948 original size:43 final size:42
Alignment explanation
Indices: 82626834--82626966 Score: 142
Period size: 43 Copynumber: 3.1 Consensus size: 42
82626824 AAAAGCGCTG
* * * *
82626834 CTAAAGAACGTGACCTTTAGTGGCACTTTTCACACAAACGCCT
1 CTAAAGAACGTGACCTTTAG-CGCGCTTTTCACATAAACGCCA
* * *
82626877 CTAAAGAATGTGACATTTAGTGCCGCTTTTCACATAAACGCCA
1 CTAAAGAACGTGACCTTTAGCG-CGCTTTTCACATAAACGCCA
* *
82626920 CTAAAGAACGTGACCTTTAGCGCTGCTTTT-ATCATAGACGCCG
1 CTAAAGAACGTGACCTTTAGCGC-GCTTTTCA-CATAAACGCCA
82626963 CTAA
1 CTAA
82626967 GCCGCTAAAG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 3 0.04
43 73 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
CTAAAGAACGTGACCTTTAGCGCGCTTTTCACATAAACGCCA
Found at i:82627063 original size:43 final size:43
Alignment explanation
Indices: 82627016--82627130 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 43
82627006 AAATGTCACC
* *
82627016 AAAGACCATTACATTTAACGACGCTTTTCTCAAAAACACCGCT
1 AAAGACCATTACCTTTAACGGCGCTTTTCTCAAAAACACCGCT
* * * * *
82627059 AAAGAACGTGACCTTTAACGGCGC-TTTCTCAATAACACCGTT
1 AAAGACCATTACCTTTAACGGCGCTTTTCTCAAAAACACCGCT
* *
82627101 AAATACCATTACCTTTAGCGGCGCTTTTCT
1 AAAGACCATTACCTTTAACGGCGCTTTTCT
82627131 TACAAACGCC
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 35 0.59
43 24 0.41
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (43 bp):
AAAGACCATTACCTTTAACGGCGCTTTTCTCAAAAACACCGCT
Found at i:82627568 original size:43 final size:43
Alignment explanation
Indices: 82627455--82627612 Score: 208
Period size: 43 Copynumber: 3.7 Consensus size: 43
82627445 AAACGCTGTA
* * * *
82627455 AAAAACACCGCTAAAAGTCATGACCTTTAGTGGCGCTTTTACCA
1 AAAAACGCCACTAAAAGTCATGACCTTTAGCGGCGCTTTT-CCC
* *
82627499 AAAAATGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCACTAAAAGTCATGACCTTTAGCGGCGCTTTTCCC
* * *
82627542 AAAAACGCCACTAAAATTTATTACCTTTAGCGGCGCTTTTCCC
1 AAAAACGCCACTAAAAGTCATGACCTTTAGCGGCGCTTTTCCC
* *
82627585 ACAAACGCCACTAAAAATCATGACCTTT
1 AAAAACGCCACTAAAAGTCATGACCTTT
82627613 TAAAAAATTA
Statistics
Matches: 101, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 64 0.63
44 37 0.37
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (43 bp):
AAAAACGCCACTAAAAGTCATGACCTTTAGCGGCGCTTTTCCC
Found at i:82627631 original size:18 final size:21
Alignment explanation
Indices: 82627610--82627680 Score: 60
Period size: 24 Copynumber: 3.3 Consensus size: 21
82627600 AATCATGACC
82627610 TTTTAA-AAA-ATTAT-TTTA
1 TTTTAATAAATATTATATTTA
82627628 TTTTAATTAAATATTATATTTA
1 TTTTAA-TAAATATTATATTTA
*
82627650 TTTCTATGTTAAATATTATA-TTA
1 TTT-TA--ATAAATATTATATTTA
82627673 TGTTTAAT
1 T-TTTAAT
82627681 TTTTGAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
18 6 0.14
20 3 0.07
21 6 0.14
22 7 0.16
23 8 0.19
24 13 0.30
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (21 bp):
TTTTAATAAATATTATATTTA
Found at i:82627664 original size:24 final size:22
Alignment explanation
Indices: 82627619--82627681 Score: 76
Period size: 24 Copynumber: 2.8 Consensus size: 22
82627609 CTTTTAAAAA
82627619 ATTAT-TTTATTTTAATTAAAT
1 ATTATATTTATTTTAATTAAAT
*
82627640 ATTATATTTATTTCTATGTTAAAT
1 ATTATATTTATTT-TA-ATTAAAT
82627664 ATTATA-TTATGTTTAATT
1 ATTATATTTAT-TTTAATT
82627682 TTTGAAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 5 0.14
22 9 0.25
23 8 0.22
24 14 0.39
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (22 bp):
ATTATATTTATTTTAATTAAAT
Found at i:82632964 original size:17 final size:16
Alignment explanation
Indices: 82632944--82632975 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82632934 AACGAAGGAT
82632944 CGAGAGAATAAGAGTAA
1 CGAGAGAA-AAGAGTAA
82632961 CGAGAGAAAAGAGTA
1 CGAGAGAAAAGAGTA
82632976 GCTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.06, G:0.31, T:0.09
Consensus pattern (16 bp):
CGAGAGAAAAGAGTAA
Found at i:82633350 original size:16 final size:16
Alignment explanation
Indices: 82633313--82633354 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82633303 TTAATCATAT
*
82633313 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
82633329 TT-AAATATATTATAA
1 TTAAAATATATTATAA
82633344 TTAAAATATAT
1 TTAAAATATAT
82633355 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:82633361 original size:14 final size:15
Alignment explanation
Indices: 82633322--82633363 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82633312 TTTAAACATA
*
82633322 ATTATTATTAAATAT
1 ATTATAATTAAATAT
82633337 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
82633351 A-TATAATTTAATA
1 ATTATAATTAAATA
82633364 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:82633558 original size:26 final size:28
Alignment explanation
Indices: 82633529--82633589 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
82633519 CATGAATTTG
*
82633529 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
82633555 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
82633583 TAAAATT
1 TATAATT
82633590 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:82637383 original size:21 final size:21
Alignment explanation
Indices: 82637359--82637405 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
82637349 CACTAAAAAT
82637359 TAAACCCCAAATCAC-AGAACA
1 TAAACCCCAAATC-CTAGAACA
* *
82637380 TAAACCCTAAATCCTAGACCA
1 TAAACCCCAAATCCTAGAACA
82637401 TAAAC
1 TAAAC
82637406 TTACACCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.15
Consensus pattern (21 bp):
TAAACCCCAAATCCTAGAACA
Found at i:82637787 original size:40 final size:39
Alignment explanation
Indices: 82637743--82637826 Score: 107
Period size: 39 Copynumber: 2.1 Consensus size: 39
82637733 GCGTTTTCTG
*
82637743 AAAAGCGCCGCTAATGCTCGATCT-TTCACGGCGTTTTTCA
1 AAAAGCGCCG-TAATGCTCGATCTATT-ACGGCATTTTTCA
* * *
82637783 AAAAGCGCCGTTATTCTCGATCTATTGCGGCATTTTTCA
1 AAAAGCGCCGTAATGCTCGATCTATTACGGCATTTTTCA
82637822 AAAAG
1 AAAAG
82637827 TACTGCTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
39 27 0.69
40 12 0.31
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (39 bp):
AAAAGCGCCGTAATGCTCGATCTATTACGGCATTTTTCA
Found at i:82637819 original size:39 final size:40
Alignment explanation
Indices: 82637743--82637963 Score: 114
Period size: 40 Copynumber: 5.2 Consensus size: 40
82637733 GCGTTTTCTG
*
82637743 AAAAGCGCCGCTAATGCTCGATCTTTCACGGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTTTCACGGCATTTTTCA
* * *
82637783 AAAAGCGCCG-TTATTCTCGATCTATT-GCGGCATTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCT-TTCACGGCATTTTTCA
** * * *
82637822 AAAAGTACTGCTAATG-TCG-TCATTTTACTAAACTTTTTTGTGGC-GTTTTCTG
1 AAAAGCGCCGCTAATGCTCGATC--TTT-C---AC--------GGCATTTTTC-A
82637874 AAAAGCGCCGCTAATGCTCGATCTTT-AGCGGCATTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTTTCA-CGGCATTTTTCA
* *
82637914 AAAAGCACCGCGAATGCTCGATCTTT-AGCGGCATTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTTTCA-CGGCATTTTTCA
*
82637954 CAAAAACGCC
1 -AAAAGCGCC
82637964 ACTATAGTTC
Statistics
Matches: 137, Mismatches: 21, Indels: 45
0.67 0.10 0.22
Matches are distributed among these distances:
38 2 0.01
39 34 0.25
40 57 0.42
41 12 0.09
44 1 0.01
47 1 0.01
48 1 0.01
51 5 0.04
52 19 0.14
53 3 0.02
54 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTTTCACGGCATTTTTCA
Found at i:82637930 original size:40 final size:41
Alignment explanation
Indices: 82637874--82637958 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 41
82637864 GCGTTTTCTG
* *
82637874 AAAAGCGCCGCTAATGCTCGATCTTTAGCGGCATTTTTCA-
1 AAAAGCACCGCGAATGCTCGATCTTTAGCGGCATTTTTCAC
82637914 AAAAGCACCGCGAATGCTCGATCTTTAGCGGCATTTTTCAC
1 AAAAGCACCGCGAATGCTCGATCTTTAGCGGCATTTTTCAC
82637955 AAAA
1 AAAA
82637959 ACGCCACTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 38 0.90
41 4 0.10
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (41 bp):
AAAAGCACCGCGAATGCTCGATCTTTAGCGGCATTTTTCAC
Found at i:82638318 original size:45 final size:45
Alignment explanation
Indices: 82638249--82638338 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 45
82638239 TTTTCTTTAA
* * *
82638249 ACCTCTGCTTCTCTTGATGTTGCCTCCACCTTAATTTGAGTAATT
1 ACCTCTGCTTCTCTCGATGCTGCCTCCACCTTAATTTGAGCAATT
* *
82638294 ACCTCTGCTTCTCTCGATGCTGCCTCCGCTTTAATTTGAGCAATT
1 ACCTCTGCTTCTCTCGATGCTGCCTCCACCTTAATTTGAGCAATT
82638339 TGTTAAACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.17, C:0.29, G:0.14, T:0.40
Consensus pattern (45 bp):
ACCTCTGCTTCTCTCGATGCTGCCTCCACCTTAATTTGAGCAATT
Found at i:82638721 original size:13 final size:14
Alignment explanation
Indices: 82638695--82638723 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82638685 ACTAACGACG
82638695 AATTAAACCATTAT
1 AATTAAACCATTAT
82638709 AATTAAA-CATTAT
1 AATTAAACCATTAT
82638722 AA
1 AA
82638724 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:82643631 original size:47 final size:46
Alignment explanation
Indices: 82643558--82643861 Score: 215
Period size: 47 Copynumber: 6.5 Consensus size: 46
82643548 TGGGTTTTAT
*
82643558 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATAGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGAC
* * * * * *
82643606 GAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATA-
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATA-GAGAC
* * * *
82643653 -ATAGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGCGTAGAGAT
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGAC
* * * * *
82643700 GAGCGCCAGTATAAGACATGTCTGGGACATGCATCGGCCTCGATGAA
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGA-GAC
* **
82643747 GATAGCCAGTGTAAGAGGTGTCTGGGACATGCATCGGC-TA-AG-C
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGAC
* * * * * * * *
82643790 GTA-ATGCTAATGTATGACATGTCTGGGACATGCGTCAGCACGTACATAT
1 G-AGA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--TAGAGAC
82643839 GAGAGCCAGTGTAAGACCATGTC
1 GAGAGCCAGTGTAAGA-CATGTC
82643862 CTAACTTAAC
Statistics
Matches: 198, Mismatches: 42, Indels: 31
0.73 0.15 0.11
Matches are distributed among these distances:
43 2 0.01
44 29 0.15
45 1 0.01
46 30 0.15
47 84 0.42
48 44 0.22
49 8 0.04
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGAC
Found at i:82643722 original size:94 final size:93
Alignment explanation
Indices: 82643561--82643861 Score: 326
Period size: 94 Copynumber: 3.2 Consensus size: 93
82643551 GTTTTATGAG
* *
82643561 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATAGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGACGAGCGCTAGTGTAAGACATG
82643626 TCTGGGACATGCATCAGCCACATTATAAT
65 TCTGGGACATGCATCAGCCACATTATAAT
* * * *
82643655 AGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGCGTAGAGATGAGCGCCAGTATAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGACGAGCGCTAGTGTAAGACATG
* * *
82643720 TCTGGGACATGCATCGGCCTCGATGA-AGAT
65 TCTGGGACATGCATCAGCCAC-ATTATA-AT
** ** * *
82643750 AGCCAGTGTAAGA-GGTGTCTGGGACAT-GCATCGGCTA-AG-CGTAATGCTAATGTATGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGACG-AGCGCTAGTGTAAGACATG
* * *
82643811 TCTGGGACATGCGTCAGCACGTACA-TATGAG
65 TCTGGGACATGCATCAGC-C--ACATTATAAT
82643842 AGCCAGTGTAAGACCATGTC
1 AGCCAGTGTAAGACCATGTC
82643862 CTAACTTAAC
Statistics
Matches: 171, Mismatches: 28, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
90 1 0.01
91 31 0.18
92 18 0.11
93 13 0.08
94 90 0.53
95 18 0.11
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGACGAGCGCTAGTGTAAGACATGT
CTGGGACATGCATCAGCCACATTATAAT
Found at i:82644708 original size:55 final size:55
Alignment explanation
Indices: 82644632--82644740 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 55
82644622 TAAGTTAGCA
* *
82644632 TTGTCCACGAGTAGGCTACACGGGCGTGGGCCATAGCCGTG-TCTATAAGTCAGTT
1 TTGTCCACGAGTAGGCCACACGGGCATGGGCCATAGCCGTGCTCTA-AAGTCAGTT
* * *
82644687 TTGTCCACTG-GTAGGCCACACGGGCATGTGTCATGGCCGTGCTCTAAAGTCAGT
1 TTGTCCAC-GAGTAGGCCACACGGGCATGGGCCATAGCCGTGCTCTAAAGTCAGT
82644741 GTTACACACG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
55 42 0.89
56 5 0.11
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (55 bp):
TTGTCCACGAGTAGGCCACACGGGCATGGGCCATAGCCGTGCTCTAAAGTCAGTT
Found at i:82651161 original size:94 final size:94
Alignment explanation
Indices: 82650855--82651177 Score: 297
Period size: 94 Copynumber: 3.4 Consensus size: 94
82650845 TTGGGTTATG
* *
82650855 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGAGACGAGGGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATAGAG-CGAGCGCTAGTGTAAGA
*
82650920 CATGTCTAGGACATGCATCAGC-C-ACATTA
65 CATGTCTGGGACATGCATCAGCACTACA-TA
* * * * *
82650949 TAATAGCCAGTGTAAGACCATGTCTGGGACATGGA-ATCGGCGTAGAGCTGAGCGCCAGTATAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACAT-GACATCGGCATAGAGC-GAGCGCTAGTGTAAG
* * *
82651013 ACATAT-TCGGGAAATGCATC-GGACT-CGATGA
64 ACATGTCT-GGGACATGCATCAGCACTAC-AT-A
* * ** * * *
82651044 AGATAGATAGTGTAAGA-CGTGTCTGGGACAT-ACATCAGC-TA-AGCGCAAGTGCTAGTGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATAGAGCG--AGCGCTAGTGTAAG
82651105 ACATGTCTGGGACATGCATCAGCACGTACATA
64 ACATGTCTGGGACATGCATCAGCAC-TACATA
** *
82651137 TGAGAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGC
82651178 CTCGATGAAG
Statistics
Matches: 183, Mismatches: 30, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
90 1 0.01
91 3 0.02
92 30 0.16
93 26 0.14
94 100 0.55
95 23 0.13
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (94 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATAGAGCGAGCGCTAGTGTAAGAC
ATGTCTGGGACATGCATCAGCACTACATA
Found at i:82651201 original size:142 final size:143
Alignment explanation
Indices: 82650855--82651215 Score: 369
Period size: 141 Copynumber: 2.5 Consensus size: 143
82650845 TTGGGTTATG
* * * **
82650855 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGA-GACGAGGGCTAGTGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGATAGCTAGTGTAAG
* * ** *
82650919 ACATGTCTAGGACATGCATCAGCCACATTATAATAGCCAGTGTAAGACCATGTCTGGGACATGGA
66 ACATGTCTGGGACATACATCAGCCACAGCACAATAGCCAGTGTAAGACCATGTCTGGGACATGGA
* * *
82650984 ATCGGCGTAGAGC
131 ATCGACGTACAGA
* * * * * *
82650997 TGAGCGCCAGTATAAGA-CATAT-TCGGGAAAT-GCATCGGACTCGATGAAGATAGATAGTGTAA
1 TGAGAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGGCCTCGATGAAGATAGCTAGTGTAA
* * * *
82651059 GACGTGTCTGGGACATACATCAGCTA-AGCGCAAGT-GCTAGTGTAAGA-CATGTCTGGGACAT-
65 GACATGTCTGGGACATACATCAGCCACAGCACAA-TAGCCAGTGTAAGACCATGTCTGGGACATG
* *
82651120 GCATCAGCACGTACATA
129 GAATC-G-ACGTACAGA
** *
82651137 TGAGAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGATAGCCAGTGTAAG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGATAGCTAGTGTAAG
82651202 ACCATGTCTGGGAC
66 A-CATGTCTGGGAC
82651216 TTGGCATTGG
Statistics
Matches: 175, Mismatches: 35, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
138 4 0.02
139 15 0.09
140 43 0.25
141 56 0.32
142 46 0.26
143 11 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (143 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGATAGCTAGTGTAAG
ACATGTCTGGGACATACATCAGCCACAGCACAATAGCCAGTGTAAGACCATGTCTGGGACATGGA
ATCGACGTACAGA
Found at i:82651222 original size:49 final size:47
Alignment explanation
Indices: 82650859--82651215 Score: 205
Period size: 47 Copynumber: 7.5 Consensus size: 47
82650849 GTTATGTGAG
* * * *
82650859 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGA-GACGAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGAAGAT
* * * * * *
82650907 GGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-ATTATA-AT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGA-AGAT
* * * ** *
82650953 AGCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCGTAGA-GCTGAG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGAAGAT
* * * * *
82651001 CGCCAGTATAAGACATAT-TCGGGAAATGCATCGGACTCGATGAAGAT
1 AGCCAGTGTAAGACATGTCT-GGGACATGCATCGGCCTCGATGAAGAT
** * * * * *
82651048 AGATAGTGTAAGACGTGTCTGGGACATACATCAG-CT-AAGCGCAAG-T
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-TG-AAGAT
* * * *
82651094 -GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTAC-AT-ATGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-C-T-CGATGAAGAT
**
82651141 AGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGAAGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATGAAGAT
82651190 AGCCAGTGTAAGACCATGTCTGGGAC
1 AGCCAGTGTAAGA-CATGTCTGGGAC
82651216 TTGGCATTGG
Statistics
Matches: 231, Mismatches: 56, Indels: 43
0.70 0.17 0.13
Matches are distributed among these distances:
45 32 0.14
46 36 0.16
47 67 0.29
48 45 0.19
49 44 0.19
50 7 0.03
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGAAGAT
Found at i:82652067 original size:55 final size:56
Alignment explanation
Indices: 82651983--82652113 Score: 149
Period size: 55 Copynumber: 2.4 Consensus size: 56
82651973 CTTAAACTTT
* * *
82651983 TAAGTTAGTATTGTCCACAGGTAGGCCACACTGGAGTGGGCCATAGTCGTG-TCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGAGTGGGCCATAGTCGTGCTCTA
* * * * * *
82652038 TAAGTCAGTTTTGTCCACGGGTAGGCCACACGGGCGTGTGTCATGGTTGTGCTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGAGTGGGCCATAGTCGTGCTCTA
* *
82652094 -AAGTCAGTGTTGTACACGGG
1 TAAGTCAGTATTGTCCACGGG
82652114 CTAAGGGCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 60 0.94
56 4 0.06
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (56 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGAGTGGGCCATAGTCGTGCTCTA
Found at i:82657529 original size:9 final size:9
Alignment explanation
Indices: 82657515--82657632 Score: 67
Period size: 9 Copynumber: 14.1 Consensus size: 9
82657505 TATGTATTAC
*
82657515 GTAAGTTAA
1 GTAAGTTAT
*
82657524 GTAAGTTTT
1 GTAAGTTAT
82657533 GTAAGTTAT
1 GTAAGTTAT
82657542 GTAAGTTAT
1 GTAAGTTAT
* *
82657551 GATATGATAT
1 G-TAAGTTAT
* *
82657561 AT-ATTTAT
1 GTAAGTTAT
82657569 GT-A-TTAT
1 GTAAGTTAT
82657576 GTAAGTTA-
1 GTAAGTTAT
82657584 -TAA--TAT
1 GTAAGTTAT
* *
82657590 AT-ATTTAT
1 GTAAGTTAT
82657598 GT-A-TTAT
1 GTAAGTTAT
*
82657605 GTAAGTTTT
1 GTAAGTTAT
*
82657614 TTAAGTTAT
1 GTAAGTTAT
82657623 GTAAGTTAT
1 GTAAGTTAT
82657632 G
1 G
82657633 ATATGATATA
Statistics
Matches: 85, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 16 0.19
8 12 0.14
9 48 0.56
10 6 0.07
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:82657673 original size:54 final size:50
Alignment explanation
Indices: 82657564--82657686 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 50
82657554 ATGATATATA
* * *
82657564 TTTATGT-A-TTATGTAAGTTAT-AATATATATTTATGTATTATGTAAGT
1 TTTATGTAAGTTATGTAAGTTATGAATATATATATATATATTATATAAGT
82657611 TTT-T-TAAGTTATGTAAGTTATGATATGATATATATATATATATATATAAGT
1 TTTATGTAAGTTATGTAAGTTATGA-AT-ATATATATATATAT-TATATAAGT
* *
82657662 TATTATGTAAGTTGTGTGAGTTATG
1 T-TTATGTAAGTTATGTAAGTTATG
82657687 TGTGCTCAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
45 1 0.02
46 2 0.03
47 16 0.26
48 1 0.02
49 2 0.03
50 12 0.19
51 9 0.15
52 2 0.03
53 1 0.02
54 16 0.26
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.50
Consensus pattern (50 bp):
TTTATGTAAGTTATGTAAGTTATGAATATATATATATATATTATATAAGT
Found at i:82657686 original size:81 final size:82
Alignment explanation
Indices: 82657518--82657687 Score: 229
Period size: 81 Copynumber: 2.1 Consensus size: 82
82657508 GTATTACGTA
* * * *
82657518 AGTTAAGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAGTT
1 AGTTATGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATATATATATATATTATATAAGTT
*
82657583 ATAATATATATTTATGT
66 ATAATATATAGTTATGT
*
82657600 A-TTATGTAAGTTTTTTAAGTTATGTAAGTTATGATATGATATATATATATATA-TATATAAGTT
1 AGTTATGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATATATATATATATTATATAAGTT
* * *
82657663 ATTATGTA-AGTTGTGT
66 ATAATATATAGTTATGT
82657679 GAGTTATGT
1 -AGTTATGT
82657688 GTGCTCAATT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 6 0.08
80 16 0.21
81 54 0.70
82 1 0.01
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (82 bp):
AGTTATGTAAGTTTTGTAAGTTATGTAAGTTATGATATGATATATATATATATATTATATAAGTT
ATAATATATAGTTATGT
Found at i:82658977 original size:33 final size:31
Alignment explanation
Indices: 82658911--82658983 Score: 85
Period size: 33 Copynumber: 2.3 Consensus size: 31
82658901 GATGAAAATA
82658911 ATATGATATATAAATTTTGATTTAATTTAATT
1 ATAT-ATATATAAATTTTGATTTAATTTAATT
*
82658943 ATATATATATGAAATTTT-ATTTTTTATTTAATT
1 ATATATATAT-AAATTTTGA--TTTAATTTAATT
*
82658976 ATACATAT
1 ATATATAT
82658984 TTTAAAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 7 0.19
32 11 0.31
33 18 0.50
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.55
Consensus pattern (31 bp):
ATATATATATAAATTTTGATTTAATTTAATT
Found at i:82661031 original size:7 final size:7
Alignment explanation
Indices: 82661019--82661124 Score: 74
Period size: 7 Copynumber: 14.9 Consensus size: 7
82661009 ATTAATTAAT
82661019 CTAAACC
1 CTAAACC
82661026 CTAAACC
1 CTAAACC
82661033 TCTAAACC
1 -CTAAACC
82661041 TCTAAACC
1 -CTAAACC
82661049 CTAAA-C
1 CTAAACC
*
82661055 ATAAACC
1 CTAAACC
* * *
82661062 TTAGACT
1 CTAAACC
82661069 CTAAACC
1 CTAAACC
*
82661076 ATAAACC
1 CTAAACC
82661083 TCT-AACC
1 -CTAAACC
*
82661090 CTTAACC
1 CTAAACC
*
82661097 CTTAACCC
1 C-TAAACC
82661105 CT-AACTC
1 CTAAAC-C
82661112 CTAAACC
1 CTAAACC
*
82661119 TTAAAC
1 CTAAAC
82661125 ACCAACTGTT
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
6 9 0.11
7 46 0.58
8 24 0.30
ACGTcount: A:0.40, C:0.37, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:82661146 original size:7 final size:7
Alignment explanation
Indices: 82661134--82661243 Score: 55
Period size: 7 Copynumber: 15.4 Consensus size: 7
82661124 CACCAACTGT
82661134 TAAACCA
1 TAAACCA
82661141 TAAACCA
1 TAAACCA
*
82661148 TAATCTC-
1 TAAAC-CA
82661155 TAAACCCA
1 TAAA-CCA
**
82661163 TAATTCA
1 TAAACCA
*
82661170 TAAACCT
1 TAAACCA
82661177 TAAA--A
1 TAAACCA
*
82661182 TAGTAACTCT
1 TA--AAC-CA
*
82661192 TAAACCT
1 TAAACCA
*
82661199 TAAACCC
1 TAAACCA
*
82661206 TAAATCA
1 TAAACCA
*
82661213 TATACCA
1 TAAACCA
82661220 TAAACCA
1 TAAACCA
*
82661227 TAAACCC
1 TAAACCA
*
82661234 TAAACTA
1 TAAACCA
82661241 TAA
1 TAA
82661244 TGATAATTAA
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
5 2 0.03
7 65 0.84
8 8 0.10
10 2 0.03
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (7 bp):
TAAACCA
Found at i:82661165 original size:15 final size:15
Alignment explanation
Indices: 82661139--82661175 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
82661129 ACTGTTAAAC
82661139 CATAAA-CCATAATCT
1 CATAAACCCATAAT-T
82661154 C-TAAACCCATAATT
1 CATAAACCCATAATT
82661168 CATAAACC
1 CATAAACC
82661176 TTAAAATAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (15 bp):
CATAAACCCATAATT
Found at i:82661180 original size:22 final size:21
Alignment explanation
Indices: 82661133--82661230 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 21
82661123 ACACCAACTG
* *
82661133 TTAAACCATAAACCAT-AATC
1 TTAAACCATAAATCATAAACC
*
82661153 TCTAAACCCATAATTCATAAACC
1 T-TAAA-CCATAAATCATAAACC
** * *
82661176 TTAAAATAGTAACTCTTAAACC
1 TTAAACCA-TAAATCATAAACC
* *
82661198 TTAAACCCTAAATCATATACC
1 TTAAACCATAAATCATAAACC
*
82661219 ATAAACCATAAA
1 TTAAACCATAAA
82661231 CCCTAAACTA
Statistics
Matches: 59, Mismatches: 15, Indels: 7
0.73 0.19 0.09
Matches are distributed among these distances:
20 1 0.02
21 25 0.42
22 29 0.49
23 4 0.07
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (21 bp):
TTAAACCATAAATCATAAACC
Found at i:82661557 original size:41 final size:40
Alignment explanation
Indices: 82661511--82661590 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
82661501 TTGAAAAACA
* *
82661511 CTGCTAATGCTCAACCTATAGCGGCGTTTTTCAAGAAAGCG
1 CTGCTAATGCTCAACCTACAGCGGCGTTTGTCAA-AAAGCG
* * *
82661552 CTGCTAATGCTCGATCTACAGCGTCGTTTGTCAAAAAGC
1 CTGCTAATGCTCAACCTACAGCGGCGTTTGTCAAAAAGC
82661591 ATCGCTAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CTGCTAATGCTCAACCTACAGCGGCGTTTGTCAAAAAGCG
Found at i:82661712 original size:40 final size:40
Alignment explanation
Indices: 82661648--82661794 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
82661638 TTAGTTTTTT
* ** * *
82661648 GCGGGGTTTTTCAAATTGCGCCGCTAATGGTTGACCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
* * * * *
82661688 GTGGCATTTTTTAAAAAGCACCGCTAATTCTCT-ATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCT-TGATCTATA
*
82661728 GCGGTGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
*
82661768 GCAGCGTTTTTCAAAAAGCGCCGCTAA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAA
82661795 CGCCACTAGA
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 85 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTTGATCTATA
Found at i:82661947 original size:40 final size:40
Alignment explanation
Indices: 82661891--82661993 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
82661881 TAGCGGGGTC
** * * * *
82661891 GCTAATGCTATATCTATAGTGGCGTTTTTTAGAAAGCGCT
1 GCTAATGCTCGATCTATAGTGGCATTTTTCAAAAAGCACT
* *
82661931 TCTAATGCTCGTTCTATAGTGGCATTTTTCAAAAAGCACT
1 GCTAATGCTCGATCTATAGTGGCATTTTTCAAAAAGCACT
*
82661971 GCTAATGCTCGATCTATAATGGC
1 GCTAATGCTCGATCTATAGTGGC
82661994 CTTTGTTTTC
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (40 bp):
GCTAATGCTCGATCTATAGTGGCATTTTTCAAAAAGCACT
Found at i:82667976 original size:42 final size:42
Alignment explanation
Indices: 82667855--82668018 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
82667845 TACCATACCA
* *
82667855 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * ** ** *
82667897 AAGCCAATAGCCCATCTATGGTCTTACAAAAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
82667940 ATGCCATATCCCAGGTATGGTCTTCCACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
82667982 ATGCCATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
82668019 GTAACCCTAA
Statistics
Matches: 101, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 68 0.67
43 32 0.32
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:82670267 original size:21 final size:21
Alignment explanation
Indices: 82670241--82670280 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82670231 CAACATGGGT
*
82670241 GTGTCCCAGGGTCACACGGCC
1 GTGTCCCAAGGTCACACGGCC
*
82670262 GTGTCCCAAGGTTACACGG
1 GTGTCCCAAGGTCACACGG
82670281 GCCACATGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (21 bp):
GTGTCCCAAGGTCACACGGCC
Found at i:82675446 original size:6 final size:6
Alignment explanation
Indices: 82675428--82675499 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
82675418 AAGAAACATT
*
82675428 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
82675477 ATTAGA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCAGA ATCAG
82675500 GTAACAAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
5 3 0.05
6 48 0.86
7 3 0.05
8 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:82675517 original size:31 final size:31
Alignment explanation
Indices: 82675445--82675517 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
82675435 CTAGAATCAG
* *
82675445 AATCAGAATCAGAATCAGAATCAAGTGACAG
1 AATCAGAATCAGAATCAGAATCAAGTAACAA
* * *
82675476 AATTAGAATCAGAATCAGTATCAGGTAACAA
1 AATCAGAATCAGAATCAGAATCAAGTAACAA
*
82675507 AATCAAAATCA
1 AATCAGAATCA
82675518 AAATGTGAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAAGTAACAA
Found at i:82675910 original size:27 final size:27
Alignment explanation
Indices: 82675880--82676099 Score: 250
Period size: 27 Copynumber: 8.2 Consensus size: 27
82675870 GGTAAAATGG
* * *
82675880 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
82675907 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
82675934 TATTTCTACCCTATAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
82675961 TAATTCTACCCTACAA-GGTAATTTC-A
1 TAATTCTACCCTACAAGGGT-ATTTCGA
*
82675987 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
82676015 TAATTCTACCCTAC-AGGGTATTTTGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
82676041 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
82676067 GTTATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
82676095 TAATT
1 TAATT
82676100 TCACAAATCA
Statistics
Matches: 164, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
26 28 0.17
27 133 0.81
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:82676008 original size:81 final size:80
Alignment explanation
Indices: 82675877--82676126 Score: 301
Period size: 81 Copynumber: 3.1 Consensus size: 80
82675867 AAGGGTAAAA
* * * * *
82675877 TGGTAATTTTACCCCACAAGGGTATCTC-GATAATTCTACCCTATAGGGGTATTTCGGTATTTCT
1 TGGTAATTCTACCCTACAA-GGTATTTCAG-TAATTCTACCCTACAAGGGTATTTCGGTATTTCT
82675941 ACCCTATAAGGGTATTT
64 ACCCTATAAGGGTATTT
*
82675958 TGGTAATTCTACCCTACAAGGTAATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA
1 TGGTAATTCTACCCTACAAGGT-ATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTA
*
82676023 CCCTA-CAGGGTATTT
65 CCCTATAAGGGTATTT
* * *
82676038 TGATAATTCTACCCTACAGGGGTATTTCAGTTATTCTACCCTACAAGGGTATTTCGGTAATTTC-
1 TGGTAATTCTACCCTACA-AGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGT-ATTTCT
** *
82676102 A-CAAATCAGGGGTATTT
64 ACCCTAT-AAGGGTATTT
82676119 TGGTAATT
1 TGGTAATT
82676127 TTACAAACCA
Statistics
Matches: 147, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
79 2 0.01
80 64 0.44
81 80 0.54
82 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (80 bp):
TGGTAATTCTACCCTACAAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAC
CCTATAAGGGTATTT
Found at i:82676074 original size:80 final size:81
Alignment explanation
Indices: 82675907--82676099 Score: 300
Period size: 80 Copynumber: 2.4 Consensus size: 81
82675897 GGTATCTCGA
* * * *
82675907 TAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCTATAAGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTGATAATTCTACCC
82675972 TACAAGGTAATTTCAG
66 TACAAGGTAATTTCAG
*
82675988 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTA-CAGGGTATTTTGATAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTGATAATTCTACCC
*
82676052 TACAGGGGT-ATTTCAG
66 TACA-AGGTAATTTCAG
*
82676068 TTATTCTACCCTACAAGGGTATTTCGGTAATT
1 TAATTCTACCCTACAAGGGTATTTCGGTAATT
82676100 TCACAAATCA
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
80 64 0.62
81 40 0.38
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGTATTTTGATAATTCTACCC
TACAAGGTAATTTCAG
Found at i:82676142 original size:54 final size:54
Alignment explanation
Indices: 82676081--82676440 Score: 192
Period size: 54 Copynumber: 6.7 Consensus size: 54
82676071 TTCTACCCTA
82676081 CAAGGGTATTTCGGTAATTTCACAAATC-AGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTCACAAATCGA-GGGTATTTTGGTAATTTTACAAAC
* * *** **
82676135 CAGGGGTACTTT-GGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTA-TTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* *** *** * * *
82676189 CAAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
* ** * ** * *** * **
82676243 CGAGGGTAAAAT-AGTAA-TTCTGTAAACCGAGGGTAAAATGGTAATTCTATCTTA-
1 CAAGGGT-ATTTCGGTAATTTC-ACAAATCGAGGGTATTTTGGTAATTTTA-CAAAC
* * * * * **
82676297 CATGAGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
** * * * * *
82676351 TGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTAGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
** * *
82676405 CGGGGGTACTTT-GGTAATTTTACAAGTCGAGGGTAT
1 CAAGGGTA-TTTCGGTAATTTCACAAATCGAGGGTAT
82676441 ATCAGTAATT
Statistics
Matches: 235, Mismatches: 61, Indels: 20
0.74 0.19 0.06
Matches are distributed among these distances:
53 9 0.04
54 214 0.91
55 12 0.05
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAAC
Found at i:82676155 original size:27 final size:26
Alignment explanation
Indices: 82676084--82676209 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
82676074 TACCCTACAA
* *
82676084 GGGTATTTCGGTAATTTCACAAATCAG
1 GGGTATTT-GGTAATTTTACAAACCAG
82676111 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTA-TTTGGTAATTTTACAAACCAG
*** *
82676138 GGGTACTTTGGTAATTTTATTGATC-G
1 GGGTA-TTTGGTAATTTTACAAACCAG
** *
82676164 AGGGTATTTTGGTAATTTTGTAAACCAA
1 -GGGTA-TTTGGTAATTTTACAAACCAG
*
82676192 GGGTATTTCAGTAATTTT
1 GGGTATTT-GGTAATTTT
82676210 GTAAATCGAG
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
26 4 0.05
27 74 0.91
28 3 0.04
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAACCAG
Found at i:82676210 original size:27 final size:27
Alignment explanation
Indices: 82676164--82676223 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
82676154 TTATTGATCG
**
82676164 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
* *
82676191 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAACCA
82676218 AGGGTA
1 AGGGTA
82676224 AAATAGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAACCA
Found at i:82676231 original size:27 final size:27
Alignment explanation
Indices: 82676175--82676288 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
82676165 GGGTATTTTG
* **
82676175 GTAATTTTGTAAACCAAGGGT-ATTTCA
1 GTAATTTTGTAAACCGAGGGTAAAAT-A
*
82676202 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAACCGAGGGTAAAATA
* *
82676229 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTTTGTAAACCGAGGGTAAAATA
* *
82676256 GTAATTCTGTAAACCGAGGGTAAAATG
1 GTAATTTTGTAAACCGAGGGTAAAATA
82676283 GTAATT
1 GTAATT
82676289 CTATCTTACA
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 75 0.97
28 2 0.03
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (27 bp):
GTAATTTTGTAAACCGAGGGTAAAATA
Found at i:82676332 original size:27 final size:27
Alignment explanation
Indices: 82676302--82676451 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
82676292 TCTTACATGA
*
82676302 GTATTTCAGTAATTTTACAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
82676329 GTATTTCAGTAATTTTACAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
82676356 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
82676383 ATATTT-AGGTAATTTTATAAATCGGGG
1 GTATTTCA-GTAATTTTACAAATCGAGG
* *
82676410 GTACTTT-GGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
*
82676437 GTATATCAGTAATTT
1 GTATTTCAGTAATTT
82676452 AGTAAACTAA
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.02
27 99 0.94
28 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:82678416 original size:6 final size:6
Alignment explanation
Indices: 82678398--82678485 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
82678388 AAGAAACATT
* * *
82678398 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAGA ATCA-A GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
82678447 ATCAGA ATCAGT ATCAGGTA A-CAGA ATTAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
82678486 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:82678443 original size:31 final size:31
Alignment explanation
Indices: 82678407--82678485 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
82678397 TATCAGAACT
* * *
82678407 AGAATCAGAATCAGAATTAGAATCAAGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
* *
82678438 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
*
82678469 AGAATTAAAATCAGAAT
1 AGAATCAAAATCAGAAT
82678486 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAAGTAAC
Done.