Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 245 of 362
Found at i:82678912 original size:27 final size:27
Alignment explanation
Indices: 82678880--82679102 Score: 272
Period size: 27 Copynumber: 8.3 Consensus size: 27
82678870 GGGGCAAAAT
* *
82678880 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
82678907 GGTAATTTTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
82678934 GGT-ATTTCTACCCTAGAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* ** *
82678961 GGTAA-TTCACCCTACTGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
82678987 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
82679014 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
82679041 GATAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTTTACCCTACAAG-GGTATTTC
* * *
82679068 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
82679095 GGTAATTT
1 GGTAATTT
82679103 CACAAATTAG
Statistics
Matches: 170, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
26 24 0.14
27 143 0.84
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:82678999 original size:80 final size:81
Alignment explanation
Indices: 82678882--82679103 Score: 304
Period size: 80 Copynumber: 2.7 Consensus size: 81
82678872 GGCAAAATGG
* * * * *
82678882 TAATTTTACCCCACA-AGGGTATCTCGGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACC
1 TAATTCTACCCTACAGA-GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACC
* *
82678946 CTAGAAGGGTATTTCGG
65 CTACAAGGGTATTTCGA
* * * *
82678963 TAATTC-ACCCTACTGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
82679027 TACAAGGGTATTTCGA
66 TACAAGGGTATTTCGA
*
82679043 TAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTC
1 TAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGT-ATTTC
82679104 ACAAATTAGG
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
80 69 0.57
81 49 0.40
82 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTACCC
TACAAGGGTATTTCGA
Found at i:82679067 original size:107 final size:108
Alignment explanation
Indices: 82678881--82679101 Score: 320
Period size: 107 Copynumber: 2.1 Consensus size: 108
82678871 GGGCAAAATG
* * * *
82678881 GTAATTTTACCCCACAAGGGTATCTCGGTAATTTTACCCTACAAGGGTATTTCGGTATTTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
* * **
82678946 CTAGAAGGGTATTTCGGTAATTC-ACCCTACTGGGGTATTTTA
66 CTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
* *
82678988 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
82679053 CTAC-AGAGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTG
66 CTACAAG-GGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
82679096 GTAATT
1 GTAATT
82679102 TCACAAATTA
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
106 2 0.02
107 77 0.76
108 22 0.22
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (108 bp):
GTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTA
Found at i:82679118 original size:54 final size:54
Alignment explanation
Indices: 82678898--82679128 Score: 213
Period size: 54 Copynumber: 4.3 Consensus size: 54
82678888 TACCCCACAA
* * *
82678898 GGGTATCTCGGTAATTTTACCCTACAAGGGTATTTCGGT-ATTTCTACC-CTAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCATTAG
** ** * * *
82678950 AAGGGTATTTCGGTAATTC-ACCCTACTGGGGTATTTTAGTAA-TTCTACCCTACAA
1 --GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCAT-TAG
* * *
82679005 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAA-TTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCAT-TAG
* * * *
82679059 AGGTATTTCAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTC-ACAAATTAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTAC-CATTAG
*
82679113 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
82679129 TTGCAAACCA
Statistics
Matches: 146, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
53 41 0.28
54 100 0.68
55 5 0.03
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTCTACCATTAG
Found at i:82679157 original size:27 final size:27
Alignment explanation
Indices: 82679086--82679158 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
82679076 TACCCTACAA
* **
82679086 GGGTATTTTGGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82679113 GGGTATTTTGGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
82679140 GGGTATTTTGGTAATTTTA
1 GGGTATTTTGGTAATTTTA
82679159 TTGATCGATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82679198 original size:27 final size:27
Alignment explanation
Indices: 82679113--82679225 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 27
82679103 CACAAATTAG
* * *
82679113 GGGTATTTTGGTAATTTTGCAAACCAG
1 GGGTATTTTAGTAATTTTGTAAACCAA
* * ** * *
82679140 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTAGTAATTTTGTAAACCAA
*
82679167 TGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTGTAAACCAA
* * *
82679194 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTGTAAACCAA
82679221 GGGTA
1 GGGTA
82679226 AAATGGTAAT
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTGTAAACCAA
Found at i:82679220 original size:54 final size:54
Alignment explanation
Indices: 82679113--82679453 Score: 170
Period size: 54 Copynumber: 6.3 Consensus size: 54
82679103 CACAAATTAG
* * ** **
82679113 GGGTATTTTGGTAATTTTGCAAACCAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
* * *
82679167 TGGTATTTTAGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
*** * ** * * ** * *
82679221 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAAT-AGTAATTCTGTAAATCGA
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGT-ATTTCAGTAATTTTATAAATCGA
*** * ** * * **
82679275 GGGTAAAATGGTAATTCTAT-CTTA--TAGGAGTATTTCAGTAATTTTACAAATTAA
1 GGGTATTTTAGTAATT-T-TGCAAACCAAGG-GTATTTCAGTAATTTTATAAATCGA
* * ** * * *
82679329 GGGTATTTCAGTAATTTTGCGAACTGAGGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
* * ** * ** * *
82679383 GGATATTTAAGTAATTTTATAAATCGGGGGTACTTT-AGTAATTTTACAAGTCGA
1 GGGTATTTTAGTAATTTTGCAAACCAAGGGTA-TTTCAGTAATTTTATAAATCGA
*
82679437 GGGTATTTCAGTAATTT
1 GGGTATTTTAGTAATTT
82679454 GGTAAAATAA
Statistics
Matches: 224, Mismatches: 54, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
52 1 0.00
53 8 0.04
54 204 0.91
55 10 0.04
56 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTCAGTAATTTTATAAATCGA
Found at i:82679234 original size:27 final size:27
Alignment explanation
Indices: 82679204--82679290 Score: 147
Period size: 27 Copynumber: 3.2 Consensus size: 27
82679194 GGGTATTTCA
82679204 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
82679231 GTAATTTTATAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
82679258 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
82679285 GTAATT
1 GTAATT
82679291 CTATCTTATA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:82679334 original size:27 final size:27
Alignment explanation
Indices: 82679304--82679453 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
82679294 TCTTATAGGA
**
82679304 GTATTTCAGTAATTTTACAAATTAAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
82679331 GTATTTCAGTAATTTTGCGAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* *
82679358 GTATTTCGGTAATTTTACAAATCAAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * * *
82679385 ATATTTAAGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
82679412 GTACTTT-AGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
82679439 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
82679454 GGTAAAATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.03
27 94 0.93
28 4 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:82679390 original size:81 final size:82
Alignment explanation
Indices: 82679300--82679453 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 82
82679290 TCTATCTTAT
* * *
82679300 AGGAGTATTTCAGTAATTTTACAAATTAAGGGTA-TTTCAGTAATTTTGCGAACT-GAGGGTATT
1 AGGAGTATTTAAGTAATTTTACAAATCAAGGGTACTTT-AGTAATTTTAC-AACTCGAGGGTATT
*
82679363 TCGGTAATTTTACAAATCA
64 TCAGTAATTTTACAAATCA
* ** *
82679382 AGGA-TATTTAAGTAATTTTATAAATCGGGGGTACTTTAGTAATTTTACAAGTCGAGGGTATTTC
1 AGGAGTATTTAAGTAATTTTACAAATCAAGGGTACTTTAGTAATTTTACAACTCGAGGGTATTTC
82679446 AGTAATTT
66 AGTAATTT
82679454 GGTAAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
80 3 0.05
81 52 0.84
82 7 0.11
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (82 bp):
AGGAGTATTTAAGTAATTTTACAAATCAAGGGTACTTTAGTAATTTTACAACTCGAGGGTATTTC
AGTAATTTTACAAATCA
Found at i:82686920 original size:51 final size:51
Alignment explanation
Indices: 82686825--82686926 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
82686815 TAGGGTACAG
82686825 GATGCATGCTGAATGCTTTATGATTGGGATGGATTATTTACCTTATTATGC
1 GATGCATGCTGAATGCTTTATGATTGGGATGGATTATTTACCTTATTATGC
* * *
82686876 GATGCATGCTGAATGGTTTATGATTGGGATGGTTTATTTGCCTTATTATGC
1 GATGCATGCTGAATGCTTTATGATTGGGATGGATTATTTACCTTATTATGC
82686927 TATATTTTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.22, C:0.11, G:0.25, T:0.42
Consensus pattern (51 bp):
GATGCATGCTGAATGCTTTATGATTGGGATGGATTATTTACCTTATTATGC
Found at i:82690145 original size:27 final size:27
Alignment explanation
Indices: 82690113--82690193 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
82690103 AGATACCTGA
82690113 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
* * *
82690140 ATCAGTAATTGTGG-AATATCCACCAGT
1 AACAGTAAATGTGGCAA-AGCCACCAGT
* * * *
82690167 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
82690194 GCAGTACTTC
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
26 2 0.05
27 39 0.93
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (27 bp):
AACAGTAAATGTGGCAAAGCCACCAGT
Found at i:82690366 original size:27 final size:27
Alignment explanation
Indices: 82690335--82690665 Score: 425
Period size: 27 Copynumber: 12.3 Consensus size: 27
82690325 GGGCATAATC
* *
82690335 ATCATTTTACCATACAGGGGTATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
82690362 ATCATTTTACCTTACAGGGGCATTAC-
1 ATCATTTTACCCTACAGGGGCATTACG
* *
82690388 AGTCATTTTACCCTACAGGAGCATTATG
1 A-TCATTTTACCCTACAGGGGCATTACG
*
82690416 ATCATTTTACCCTACAGGGGCATTATG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
82690443 ATCATTTTACCCTACAGGTGCATTATG
1 ATCATTTTACCCTACAGGGGCATTACG
* * *
82690470 GTCATTTTACCTTATAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
82690497 GTCATTTTATCCTACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
* *
82690524 GTCATTTTACCTTACAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
82690551 ATCATTTTACCCTACAGGGGCATTAC-
1 ATCATTTTACCCTACAGGGGCATTACG
* * *
82690577 AGTCATTTTATCCTACAGGGGTATTATG
1 A-TCATTTTACCCTACAGGGGCATTACG
* *
82690605 GTCATTTTACCCTATAGGGGCATTACG
1 ATCATTTTACCCTACAGGGGCATTACG
*
82690632 ATCATTTTATCCTACAGGGGCATTAC-
1 ATCATTTTACCCTACAGGGGCATTACG
82690658 AGTCATTT
1 A-TCATTT
82690666 CATCTACTTT
Statistics
Matches: 269, Mismatches: 30, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.01
27 265 0.99
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
ATCATTTTACCCTACAGGGGCATTACG
Found at i:82697407 original size:19 final size:20
Alignment explanation
Indices: 82697383--82697424 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
82697373 GACTCCTTCT
*
82697383 GATATGGTGTGTA-TGGTTG
1 GATATGGTGTGTAGTGGATG
82697402 GATATGGTGTGTAGTGGATG
1 GATATGGTGTGTAGTGGATG
82697422 GAT
1 GAT
82697425 GGGTAGGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (20 bp):
GATATGGTGTGTAGTGGATG
Found at i:82698412 original size:18 final size:20
Alignment explanation
Indices: 82698389--82698426 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
82698379 CATTCCATTT
*
82698389 TATGTTTAT-GAG-CATCCA
1 TATGTTAATAGAGCCATCCA
82698407 TATGTTAATAGAGCCATCCA
1 TATGTTAATAGAGCCATCCA
82698427 GGTTGCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 3 0.18
20 6 0.35
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (20 bp):
TATGTTAATAGAGCCATCCA
Found at i:82707583 original size:51 final size:50
Alignment explanation
Indices: 82707512--82707741 Score: 153
Period size: 51 Copynumber: 4.6 Consensus size: 50
82707502 GTGAGAACAC
* * * * *
82707512 GTGTAATACTATGTGCAGGCTACTATGTTTTAAAATGGT-TTTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATG-TGTAAAA-GGTGGTTAGGTCACAT
* * * * *
82707563 GTGTAGTACTAAGTACAGGCTATTACGTGTACAAGGTGGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTAAAAGGTGGTTAGGTCACAT
* * *** * * * *
82707613 GTGTAGTACAAAGTGCAGGCTACTATGCGTACCTGATAGCTTCGATCACAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTAAAAGGT-GGTTAGGTCACAT
* * * * *
82707664 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGGTCACA-
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTAAAAGGTGG-TTAGGTCACAT
* *
82707714 GATGTGGAACTAAGTGCAGG-TA-TATGTG
1 G-TGTAGTACTAAGTGCAGGCTACTATGTG
82707742 AGTGAAAATT
Statistics
Matches: 141, Mismatches: 34, Indels: 10
0.76 0.18 0.05
Matches are distributed among these distances:
49 9 0.06
50 46 0.33
51 86 0.61
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTAAAAGGTGGTTAGGTCACAT
Found at i:82707827 original size:16 final size:15
Alignment explanation
Indices: 82707806--82707835 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
82707796 AAATGGAGAA
82707806 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
82707822 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
82707836 AAAAACCGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:82709881 original size:22 final size:22
Alignment explanation
Indices: 82709831--82709883 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
82709821 AAGATGGCTC
*
82709831 AACGCCGTAGACAAGACGACTC
1 AACGCCGTAGACAAGACGACTA
*
82709853 AACGCCGTAGAC-AGAATGACTA
1 AACGCCGTAGACAAG-ACGACTA
*
82709875 AAGGCCGTA
1 AACGCCGTA
82709884 AAGATCACAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 2 0.07
22 25 0.93
ACGTcount: A:0.38, C:0.26, G:0.25, T:0.11
Consensus pattern (22 bp):
AACGCCGTAGACAAGACGACTA
Found at i:82710146 original size:26 final size:27
Alignment explanation
Indices: 82710117--82710175 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
82710107 GAGCATAATC
*
82710117 GTCATTCTACCATATA-GGGCTATTA-G
1 GTCATTCTACCATACAGGGGC-ATTACG
* *
82710143 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTCTACCATACAGGGGCATTACG
82710170 GTCATT
1 GTCATT
82710176 TTGCACTACA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTCTACCATACAGGGGCATTACG
Found at i:82710172 original size:27 final size:27
Alignment explanation
Indices: 82710132--82710207 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
82710122 TCTACCATAT
*
82710132 AGGGCTATTA-GGTCATTTTACCCTACA
1 AGGGC-ATTACGGTCATTTTACACTACA
* *
82710159 GGGGCATTACGGTCATTTTGCACTACA
1 AGGGCATTACGGTCATTTTACACTACA
* * *
82710186 AGGGTATTTCGGTGATTTTACA
1 AGGGCATTACGGTCATTTTACA
82710208 AACCAGGGTC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (27 bp):
AGGGCATTACGGTCATTTTACACTACA
Found at i:82727146 original size:31 final size:31
Alignment explanation
Indices: 82727108--82727171 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
82727098 CATGCTGTAA
82727108 ACACAGAAAATAAGATTAAAATATTTTTCTT
1 ACACAGAAAATAAGATTAAAATATTTTTCTT
82727139 ACACAGAAAATAAGATTAAAATATTTTTCTT
1 ACACAGAAAATAAGATTAAAATATTTTTCTT
82727170 AC
1 AC
82727172 TAAGATTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.06, T:0.34
Consensus pattern (31 bp):
ACACAGAAAATAAGATTAAAATATTTTTCTT
Found at i:82732291 original size:6 final size:6
Alignment explanation
Indices: 82732273--82732354 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
82732263 AAGAAACATT
*
82732273 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
82732322 ATCAGT ATCAGGTA A-CAGA ATCAAA ATTAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
82732355 GTGAATGCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.79
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:82732294 original size:18 final size:18
Alignment explanation
Indices: 82732273--82732354 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 18
82732263 AAGAAACATT
82732273 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
82732291 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
* *
82732308 GTGACAGAATCAGAATCAGT
1 AT--CAGAATCAGAATCAGA
*
82732328 ATCAGGTAA-CAGAATCAAA
1 ATCA-G-AATCAGAATCAGA
*
82732347 ATTAGAAT
1 ATCAGAAT
82732355 GTGAATGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
17 3 0.06
18 18 0.35
19 28 0.54
20 3 0.06
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:82732318 original size:25 final size:25
Alignment explanation
Indices: 82732287--82732354 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
82732277 GAACTAGAAT
*
82732287 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82732312 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
82732337 CAGAATCAAAATTAGAAT
1 CAGAATCAGAATCAGAAT
82732355 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:82732521 original size:27 final size:26
Alignment explanation
Indices: 82732473--82732532 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
82732463 GCAAGGCTGC
*
82732473 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
82732500 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
82732526 CAGATAT
1 CAGATAT
82732533 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:82732929 original size:27 final size:27
Alignment explanation
Indices: 82732868--82733115 Score: 336
Period size: 27 Copynumber: 9.2 Consensus size: 27
82732858 GGGTAAAATG
* * * * *
82732868 GTAATTTTACCCCACAAGGGT-TCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
82732894 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82732921 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82732948 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82732975 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82733002 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
82733029 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
82733056 GTATTTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
82733083 GTATTTCTACCCTACAAGGGCATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
82733110 ATAATT
1 GTAATT
82733116 TTGTAAATCA
Statistics
Matches: 201, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
26 18 0.09
27 183 0.91
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:82733183 original size:27 final size:27
Alignment explanation
Indices: 82733154--82733415 Score: 188
Period size: 27 Copynumber: 9.7 Consensus size: 27
82733144 TGTAGATTAA
*
82733154 GGGTACTTTGGTAATTTTACAAGTCGA-
1 GGGTATTTTGGTAATTTTACAA-TCGAG
*** * *
82733181 GGGTATTTCAATAAATTTACAGGTCGA-
1 GGGTATTTTGGTAATTTTACA-ATCGAG
** *
82733208 GGGTATTTCAGTAATTTCACAAATC-AG
1 GGGTATTTTGGTAATTTTAC-AATCGAG
* *
82733235 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAATCGAG
* * *
82733262 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAATCGAG
* * * *
82733289 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAATCGAG
* * * * *
82733316 AGGTATTTTAGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAATCGAG
* * * * *
82733343 GGGTATTTTTGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAATCGAG
* *
82733370 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAATCGAG
* *
82733397 GGGTATTTTTGTGATTTTA
1 GGGTATTTTGGTAATTTTA
82733416 TAAACCAAGG
Statistics
Matches: 196, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 191 0.97
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAATCGAG
Found at i:82733254 original size:54 final size:53
Alignment explanation
Indices: 82733207--82733510 Score: 308
Period size: 54 Copynumber: 5.8 Consensus size: 53
82733197 TTACAGGTCG
* * *
82733207 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-A
* * *
82733261 GGGGTATTTT-GATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-A
* * * *
82733315 AAGGTATTTTAGTAATTTTGCAAACCAGGGGTATTTTTGTAATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
* * * *
82733369 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
* * *
82733423 A-GG-------GT-ATTCT--AAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAA-CA
*
82733466 AGGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
82733511 GGTAAACTAA
Statistics
Matches: 216, Mismatches: 20, Indels: 28
0.82 0.08 0.11
Matches are distributed among these distances:
43 33 0.15
44 2 0.01
45 4 0.02
46 2 0.01
51 2 0.01
52 4 0.02
53 3 0.01
54 164 0.76
55 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACA
Found at i:82733281 original size:81 final size:79
Alignment explanation
Indices: 82733154--82733510 Score: 261
Period size: 81 Copynumber: 4.6 Consensus size: 79
82733144 TGTAGATTAA
* ** ** * ** * **
82733154 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAAATTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGATAATTTTACA-AACAAGGGTATTTTG
*
82733218 GTAATTTCACAAATCAG
64 GTAATTTTACAAA-CAG
* *
82733235 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAAC-AAGGGTATTTTGG
* *
82733300 TAATTTTATAAACAAA
65 TAATTTTACAAAC-AG
* * * *
82733316 AGGTATTTTAGTAATTTTGCAAACCAGGGGTATTTTTG-TAATTTTATAAACCAAGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTA-TTTTGATAATTTTACAAA-CAAGGGTATTTTG
82733380 GTAATTTTACAAACCAG
64 GTAATTTTACAAA-CAG
* * * * * *
82733397 GGGTATTTTTGTGATTTTATAAACCAAGGGTA--TT-CTAA----AC---CAGGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACAAGGGTATTTTGGT
* * *
82733452 GATTTTATAAACCAA
66 AATTTTACAAA-CAG
* * *
82733467 GGGTATTCTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTT
82733511 GGTAAACTAA
Statistics
Matches: 222, Mismatches: 41, Indels: 31
0.76 0.14 0.11
Matches are distributed among these distances:
70 53 0.24
72 2 0.01
73 3 0.01
74 1 0.00
78 5 0.02
80 2 0.01
81 148 0.67
82 8 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGATAATTTTACAAACAAGGGTATTTTGGT
AATTTTACAAACAG
Found at i:82733420 original size:27 final size:27
Alignment explanation
Indices: 82733208--82733430 Score: 266
Period size: 27 Copynumber: 8.3 Consensus size: 27
82733198 TACAGGTCGA
** * *
82733208 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82733235 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82733262 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82733289 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82733316 AGGTATTTTAGTAATTTTGCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82733343 GGGTATTTTTGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
82733370 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
82733397 GGGTATTTTTGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
82733424 GGGTATT
1 GGGTATT
82733431 CTAAACCAGG
Statistics
Matches: 168, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82733437 original size:16 final size:16
Alignment explanation
Indices: 82733416--82733446 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82733406 TGTGATTTTA
82733416 TAAACCAAGGGTATTC
1 TAAACCAAGGGTATTC
*
82733432 TAAACCAGGGGTATT
1 TAAACCAAGGGTATT
82733447 TTGGTGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (16 bp):
TAAACCAAGGGTATTC
Found at i:82733438 original size:43 final size:43
Alignment explanation
Indices: 82733390--82733476 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
82733380 GTAATTTTAC
*
82733390 AAACCAGGGGTATTTTTGTGATTTTATAAACCAAGGGTATTCT
1 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
82733433 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
1 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
82733476 A
1 A
82733477 GTAATTTTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (43 bp):
AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCT
Found at i:82733444 original size:70 final size:70
Alignment explanation
Indices: 82733362--82733500 Score: 197
Period size: 70 Copynumber: 2.0 Consensus size: 70
82733352 TGTAATTTTA
* * * * *
82733362 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTGATTTTATAAACCAAGGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
82733427 TATTC
66 TATTC
* * * *
82733432 TAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGG
1 TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
82733497 TATT
66 TATT
82733501 TTGGTAATTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.36
Consensus pattern (70 bp):
TAAACCAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTCTAGTAATTTTACAAACCAAGGG
TATTC
Found at i:82733457 original size:97 final size:96
Alignment explanation
Indices: 82733336--82733536 Score: 296
Period size: 97 Copynumber: 2.1 Consensus size: 96
82733326 GTAATTTTGC
* * *
82733336 AAACCAGGGGTATTTTTGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGT
1 AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
* * * *
82733401 ATTTTTGTGATTTTATAAACCAAGGGTATTCT
66 ATTTTGGTAATTTGATAAACCAA-AGTATTCT
*
82733433 AAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
1 AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
* *
82733498 ATTTTGGTAATTTGGTAAACTAAAGTATTCT
66 ATTTTGGTAATTTGATAAACCAAAGTATTCT
82733529 AAA-CAGGG
1 AAACCAGGG
82733537 ATAACAATAC
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 5 0.05
96 10 0.11
97 79 0.84
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.36
Consensus pattern (96 bp):
AAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTCTAGTAATTTTACAAACCAGGGGT
ATTTTGGTAATTTGATAAACCAAAGTATTCT
Found at i:82733517 original size:27 final size:27
Alignment explanation
Indices: 82733432--82733510 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
82733422 AAGGGTATTC
*
82733432 TAAACCAGGGGTATTTTGGTGATTTTA
1 TAAACCAGGGGTATTTTGGTAATTTTA
* * *
82733459 TAAACCAAGGGTATTCTAGTAATTTTA
1 TAAACCAGGGGTATTTTGGTAATTTTA
*
82733486 CAAACCAGGGGTATTTTGGTAATTT
1 TAAACCAGGGGTATTTTGGTAATTT
82733511 GGTAAACTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
TAAACCAGGGGTATTTTGGTAATTTTA
Found at i:82742797 original size:53 final size:54
Alignment explanation
Indices: 82742729--82742935 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
82742719 TTCCTTTTTA
* * *
82742729 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
82742782 AACTCACCATTGCCATGCCTTGACATGGTCTTATATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
82742836 TAGTTTATCAATGCCAT-CTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGC-CTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
82742891 AACTTACCAATGTCATGCCTTGGCATGTTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
82742936 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 40 0.33
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:82754681 original size:32 final size:33
Alignment explanation
Indices: 82754635--82754698 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
82754625 AACAGCGGGT
82754635 ACTGGGCCGAAG-CCCTTTTTAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCCTTTTTAGATA-ACAGTAA
**
82754667 ACTGGGCCTTAGCCCCTTTTTAGATAACAGTA
1 ACTGGGCCGAAGCCCCTTTTTAGATAACAGTA
82754699 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 10 0.36
33 17 0.61
34 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCCTTTTTAGATAACAGTAA
Found at i:82755070 original size:27 final size:26
Alignment explanation
Indices: 82755014--82755070 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
82755004 CAACCTTAAC
* *
82755014 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
82755040 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
82755067 CCTA
1 CCTA
82755071 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:82757105 original size:15 final size:15
Alignment explanation
Indices: 82757072--82757115 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
82757062 TTCCTATCTA
82757072 ATAATAATAATTATT-
1 ATAATAATAATT-TTC
82757087 ATAATAATAATTTTC
1 ATAATAATAATTTTC
82757102 ATAA-AA-AATTTTC
1 ATAATAATAATTTTC
82757115 A
1 A
82757116 AACATACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.29
14 4 0.14
15 16 0.57
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATAATAATTTTC
Found at i:82757166 original size:19 final size:18
Alignment explanation
Indices: 82757129--82757172 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
82757119 ATACATACAG
82757129 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
82757146 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
82757165 TACTAATT
1 TAATAATT
82757173 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:82762796 original size:40 final size:40
Alignment explanation
Indices: 82762733--82762994 Score: 411
Period size: 40 Copynumber: 6.6 Consensus size: 40
82762723 TATTCGGATG
82762733 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
82762773 ATATACGAGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82762813 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
82762853 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82762893 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * ** *
82762933 GTATTCGGGCTAACACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82762973 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82762995 TACTTGGGTT
Statistics
Matches: 204, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 14 0.07
40 188 0.92
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82770766 original size:40 final size:40
Alignment explanation
Indices: 82770711--82770972 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
82770701 TATTCGAATG
82770711 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
82770751 ATATCCGAGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82770791 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
** *
82770831 ATATCATGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
82770871 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
82770911 GTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
82770951 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82770973 TACTTGGGTT
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.07
40 189 0.92
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82778033 original size:18 final size:18
Alignment explanation
Indices: 82778010--82778045 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82778000 TGGTAAAGCC
82778010 GAATGGCTAATGTGAAAT
1 GAATGGCTAATGTGAAAT
82778028 GAATGGCTAATGTGAAAT
1 GAATGGCTAATGTGAAAT
82778046 ATATATGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (18 bp):
GAATGGCTAATGTGAAAT
Found at i:82778081 original size:48 final size:48
Alignment explanation
Indices: 82778028--82778707 Score: 1024
Period size: 48 Copynumber: 14.6 Consensus size: 48
82778018 AATGTGAAAT
* * *
82778028 GAATGGCTAATGTGAAATATATATGAGATATGTATATATGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
*
82778076 GAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
82778124 GAATGGCTAGTGTGAAATATGTATGAGATATG--TA-----TAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* * *
82778165 GAATGGCTAATGTGAAATATATATGAGATATGTATATTTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
*
82778213 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGTC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* *
82778261 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
82778309 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
82778357 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
82778405 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
*
82778453 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* * *
82778501 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAATG-T
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* * *
82778548 GAA-----A-TATG---TATG-A-GATATGT--ATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* *
82778583 GAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
82778631 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
1 GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
* *
82778679 GAATGGCTAGCGTGAAATATGTAGGAGAT
1 GAATGGCTAGTGTGAAATATGTATGAGAT
82778708 GTGTGTATAT
Statistics
Matches: 581, Mismatches: 30, Indels: 42
0.89 0.05 0.06
Matches are distributed among these distances:
34 12 0.02
35 3 0.01
36 5 0.01
37 1 0.00
38 4 0.01
40 1 0.00
41 43 0.07
42 1 0.00
43 2 0.00
44 3 0.01
45 1 0.00
46 7 0.01
47 3 0.01
48 495 0.85
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
GAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
Found at i:82778539 original size:17 final size:17
Alignment explanation
Indices: 82778517--82778573 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
82778507 CTAATGTGAA
82778517 ATATGTATGAGATATGT
1 ATATGTATGAGATATGT
* * *
82778534 ATATGT-GGTA-ATGTGAA
1 ATATGTATG-AGATATG-T
82778551 ATATGTATGAGATATGT
1 ATATGTATGAGATATGT
82778568 ATATGT
1 ATATGT
82778574 GGTAAAGCCG
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 5 0.17
17 20 0.67
18 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (17 bp):
ATATGTATGAGATATGT
Found at i:82778549 original size:34 final size:34
Alignment explanation
Indices: 82778508--82778578 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
82778498 GCCGAATGGC
82778508 TAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAATGTGAAATATGTATGAGATATGTATATGTGG
82778542 TAATGTGAAATATGTATGAGATATGTATATGTGG
1 TAATGTGAAATATGTATGAGATATGTATATGTGG
82778576 TAA
1 TAA
82778579 AGCCGAATGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.37, C:0.00, G:0.25, T:0.38
Consensus pattern (34 bp):
TAATGTGAAATATGTATGAGATATGTATATGTGG
Found at i:82778557 original size:82 final size:82
Alignment explanation
Indices: 82778460--82778626 Score: 325
Period size: 82 Copynumber: 2.0 Consensus size: 82
82778450 GCCGAATGGC
*
82778460 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
82778525 GAGATATGTATATGTGG
66 GAGATATGTATATGTGG
82778542 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
1 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
82778607 GAGATATGTATATGTGG
66 GAGATATGTATATGTGG
82778624 TAA
1 TAA
82778627 AGCCGAATGG
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.37, C:0.04, G:0.26, T:0.34
Consensus pattern (82 bp):
TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAT
GAGATATGTATATGTGG
Found at i:82778899 original size:37 final size:37
Alignment explanation
Indices: 82778849--82778950 Score: 186
Period size: 37 Copynumber: 2.8 Consensus size: 37
82778839 GAAATATATT
82778849 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
82778886 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
*
82778923 CGGGTAAGACCCGATAACTACGTGTGGA
1 CGGGTAAGACCCGATGACTACGTGTGGA
82778951 CTATTCGAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGTC
Found at i:82780277 original size:40 final size:40
Alignment explanation
Indices: 82780224--82780542 Score: 530
Period size: 40 Copynumber: 8.0 Consensus size: 40
82780214 TTGAGAGTTA
* *
82780224 TATAGCCGGGCTAAGTCCCGAAGAGTATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
82780264 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
82780304 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
82780344 TATGTCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
82780384 TATGTCCGGGCTAAGTCCCGAAGAGCATTCATGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
82780424 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
82780464 TATATCCGGGCTAAGTCCCGAACAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
82780504 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
82780543 ATGTGCATTC
Statistics
Matches: 262, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 262 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:82780756 original size:25 final size:25
Alignment explanation
Indices: 82780706--82780756 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
82780696 TGTGTAACAA
* *
82780706 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
82780731 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
82780756 C
1 C
82780757 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:82783982 original size:48 final size:48
Alignment explanation
Indices: 82783911--82784309 Score: 681
Period size: 48 Copynumber: 8.3 Consensus size: 48
82783901 TGTACAAGAT
82783911 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
82783959 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784007 AAATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784055 AAATATGTATGAGATATGTATATGTGGTAAATCCGAATGGCTAATGAG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
82784103 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784151 AAATATGTATGAGATATGTATATTTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784199 AAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784247 AAATATGTATGAGATATGTATATGTGGTAAAGCCTAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
82784295 AAATGTGTAGGAGAT
1 AAATATGTATGAGAT
82784310 GTGTGTATAT
Statistics
Matches: 335, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 335 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:82784500 original size:37 final size:37
Alignment explanation
Indices: 82784450--82784552 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
82784440 GGAAATATAT
82784450 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
82784487 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
82784524 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
82784553 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82790446 original size:17 final size:18
Alignment explanation
Indices: 82790413--82790450 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
82790403 AATTGTGATA
*
82790413 AAAAAATATTAAGGATTC
1 AAAAAACATTAAGGATTC
82790431 AAAAAACATTAA-GATTC
1 AAAAAACATTAAGGATTC
82790448 AAA
1 AAA
82790451 TTTTTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.24
Consensus pattern (18 bp):
AAAAAACATTAAGGATTC
Found at i:82790844 original size:32 final size:33
Alignment explanation
Indices: 82790805--82790884 Score: 101
Period size: 32 Copynumber: 2.4 Consensus size: 33
82790795 CAAAATATTA
*
82790805 AAATTTTTACTTTTT-TAATTT-AGTAATTTTTT
1 AAATTTTTA-TTTTTATAATTTCAATAATTTTTT
82790837 AAATTTTTATTTTTATAATTTCAATAATTTTTTGT
1 AAATTTTTATTTTTATAATTTCAATAA-TTTTT-T
*
82790872 AACTTTTTATTTT
1 AAATTTTTATTTT
82790885 CTAAAAATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
31 5 0.12
32 15 0.36
33 4 0.10
34 5 0.12
35 13 0.31
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.65
Consensus pattern (33 bp):
AAATTTTTATTTTTATAATTTCAATAATTTTTT
Found at i:82817452 original size:21 final size:20
Alignment explanation
Indices: 82817428--82817468 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
82817418 ATTTTAATTA
*
82817428 TTTATTACATTTTATTAAAAT
1 TTTAATACA-TTTATTAAAAT
*
82817449 TTTAATATATTTATTAAAAT
1 TTTAATACATTTATTAAAAT
82817469 AATTATAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTAATACATTTATTAAAAT
Found at i:82817473 original size:29 final size:29
Alignment explanation
Indices: 82817417--82817473 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
82817407 TTTTTTACAT
** *
82817417 AATTTTAATTATTTATTACATTTTATTAA
1 AATTTTAATTATTTATTACAAATAATTAA
82817446 AATTTTAATATATTTATTA-AAATAATTA
1 AATTTTAAT-TATTTATTACAAATAATTA
82817474 TAATATCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (29 bp):
AATTTTAATTATTTATTACAAATAATTAA
Found at i:82817682 original size:18 final size:18
Alignment explanation
Indices: 82817655--82817689 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82817645 CTTTTTTACT
82817655 TAAAAGATAAAAAAAATG
1 TAAAAGATAAAAAAAATG
* *
82817673 TAAAATATAACAAAAAT
1 TAAAAGATAAAAAAAAT
82817690 AACTATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (18 bp):
TAAAAGATAAAAAAAATG
Found at i:82818539 original size:28 final size:28
Alignment explanation
Indices: 82818507--82818566 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
82818497 GCAATTGGTT
82818507 ATACGGAAATGTTCAAAACAATCGTACA
1 ATACGGAAATGTTCAAAACAATCGTACA
82818535 ATACGGAAATGTTCAAAACAATCGTACA
1 ATACGGAAATGTTCAAAACAATCGTACA
82818563 ATAC
1 ATAC
82818567 TTAATTAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.22
Consensus pattern (28 bp):
ATACGGAAATGTTCAAAACAATCGTACA
Found at i:82820693 original size:30 final size:30
Alignment explanation
Indices: 82820653--82820736 Score: 132
Period size: 30 Copynumber: 2.8 Consensus size: 30
82820643 TATAAAATAT
* *
82820653 GAAAAGGGATGGTTTTGACTATCGATTAAA
1 GAAAAAGGATGGTTTTGACCATCGATTAAA
*
82820683 GAAAATGGATGGTTTTGACCATCGATTAAA
1 GAAAAAGGATGGTTTTGACCATCGATTAAA
*
82820713 GAAAAAGGATGGTTTCGACCATCG
1 GAAAAAGGATGGTTTTGACCATCG
82820737 TTTTGCATAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (30 bp):
GAAAAAGGATGGTTTTGACCATCGATTAAA
Found at i:82823258 original size:40 final size:40
Alignment explanation
Indices: 82823195--82823285 Score: 119
Period size: 40 Copynumber: 2.3 Consensus size: 40
82823185 TATTTGTGGC
* *
82823195 ACTTAGTGTGCGATTCGACATAGCTTTGGCTATATATGGA
1 ACTTAGTGTGCGATTCGACATAGCTTCGGCTATATACGGA
* * * * *
82823235 ACTTAGTGTGTGATTGGAGATAGCTTCGGCTATGTACGGC
1 ACTTAGTGTGCGATTCGACATAGCTTCGGCTATATACGGA
82823275 ACTTAGTGTGC
1 ACTTAGTGTGC
82823286 AAGATATCGA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (40 bp):
ACTTAGTGTGCGATTCGACATAGCTTCGGCTATATACGGA
Found at i:82823312 original size:28 final size:28
Alignment explanation
Indices: 82823272--82823340 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
82823262 GGCTATGTAC
* *
82823272 GGCACTTAGTGTGCAAGATATCGAGTGT
1 GGCACTTAGTGTGCAAGATATCCAGTAT
82823300 GGCACTTAGTGTGCAAGATATCCAGTAT
1 GGCACTTAGTGTGCAAGATATCCAGTAT
82823328 GGCACTTAGTGTG
1 GGCACTTAGTGTG
82823341 TGAGGCATTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (28 bp):
GGCACTTAGTGTGCAAGATATCCAGTAT
Found at i:82827839 original size:29 final size:29
Alignment explanation
Indices: 82827780--82827837 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
82827770 CAAATAGCCG
82827780 AAGCTAGTTAAATCGCACACTTAGTGCCC
1 AAGCTAGTTAAATCGCACACTTAGTGCCC
82827809 AAGCTAGTTTAAATCGCACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTTAGTGCC
82827838 AAAACTTTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCC
Found at i:82835756 original size:43 final size:43
Alignment explanation
Indices: 82835695--82835779 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
82835685 AATAAGGGGC
* * *
82835695 ACATGGCCATGGCACACGCCCGTTGCCAGAGGCCGTGTCCTCT
1 ACATGGCCAAGGCACACGCCCATGGCCAGAGGCCGTGTCCTCT
*
82835738 ACATGGCCAAGGCACACGCCCATGGCCGGAGGCCGTGTCCTC
1 ACATGGCCAAGGCACACGCCCATGGCCAGAGGCCGTGTCCTC
82835780 CACACGGCTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.18, C:0.38, G:0.29, T:0.15
Consensus pattern (43 bp):
ACATGGCCAAGGCACACGCCCATGGCCAGAGGCCGTGTCCTCT
Found at i:82836017 original size:49 final size:49
Alignment explanation
Indices: 82835945--82836044 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
82835935 ACCCGTATGG
82835945 ACAAAATAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGCACTA
1 ACAAAATAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGCACTA
82835994 ACAAAATAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGCACTA
1 ACAAAATAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGCACTA
82836043 AC
1 AC
82836045 CTACATAACA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.30
Consensus pattern (49 bp):
ACAAAATAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGCACTA
Found at i:82836747 original size:47 final size:47
Alignment explanation
Indices: 82836678--82836995 Score: 278
Period size: 47 Copynumber: 6.7 Consensus size: 47
82836668 GGTATAATAC
*
82836678 CGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCATC-CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCAAGT
* * * * *
82836725 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATC-AAGT
* *
82836774 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATCTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCA--AGT
* * * *
82836822 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGT--AG-
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACATCAAGT
* * *
82836869 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAATGC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACATCAA-GT
* *** *
82836916 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATCAAGT
82836964 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGC
82836996 ACACAAATAA
Statistics
Matches: 227, Mismatches: 27, Indels: 35
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.01
44 14 0.06
45 15 0.07
46 27 0.12
47 62 0.27
48 31 0.14
49 39 0.17
50 32 0.14
51 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCAAGT
Found at i:82836978 original size:94 final size:95
Alignment explanation
Indices: 82836677--82836992 Score: 355
Period size: 94 Copynumber: 3.3 Consensus size: 95
82836667 AGGTATAATA
* * *
82836677 CCGATGCCATGTCCCAGACATGGTCTTGCACTGGCTCATC-CATCAA-GTCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTC-TCAATGCCGATGCCATGTCCCA
* *
82836740 GACATGGTCTTACACTGACTATCGA-AATCGAGG
64 GACATGGTCTTACACTGACTCTC-ATAAT-GTGG
* ** *
82836773 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCTGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--C-TCTCAATGCCGATGCCATGTCCC
* * *
82836838 AGACATGGTCTTACACTGACACATC-T--CGTAG
63 AGACATGGTCTTACACTGACTC-TCATAATGTGG
*
82836869 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCTCAATGCCGATGCCATGTCCCAG
*
82836932 ACATGGTCTTACACTGGCTCTCATAATGTGG
65 ACATGGTCTTACACTGACTCTCATAATGTGG
82836963 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
82836993 GGCACACAAA
Statistics
Matches: 187, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
91 2 0.01
92 41 0.22
94 48 0.26
95 15 0.08
96 42 0.22
97 1 0.01
98 2 0.01
99 34 0.18
100 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCAATGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGACTCTCATAATGTGG
Found at i:82846603 original size:40 final size:40
Alignment explanation
Indices: 82846512--82846693 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
82846502 TCGAATGATG
*
82846512 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATA
* * * * *
82846553 ACCGGACTAAGAT-CCAAAGGCATTCGTGCGAGTTG-CTATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACTATA
* * *
82846593 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* * *
82846633 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
*
82846673 TCCGGGCTAAGACCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
82846694 CTTGCGCAAG
Statistics
Matches: 116, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 89 0.77
41 25 0.22
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:82854686 original size:40 final size:40
Alignment explanation
Indices: 82854592--82854776 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
82854582 ATTTCGAATG
*
82854592 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
82854633 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
82854673 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
82854713 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
82854753 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
82854777 CTTGCGCAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 89 0.74
41 29 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:82854767 original size:80 final size:81
Alignment explanation
Indices: 82854594--82854776 Score: 228
Period size: 80 Copynumber: 2.3 Consensus size: 81
82854584 TTCGAATGAT
* * *
82854594 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCAT
* * *
82854659 TCGTGCGAGTTGCTAT
66 TCATGCGAGTTGCCAC
* * *
82854675 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATTATATCCGGGCTAAG-TCCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGGCA
* *
82854738 TTTATGCTAG-TGACCAC
65 TTCATGCGAGTTG-CCAC
82854755 ATCCGGGCTAAGACCCGAAGGC
1 ATCCGGGCTAAGACCCGAAGGC
82854777 CTTGCGCAAG
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.03
80 56 0.63
81 30 0.34
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (81 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGCAT
TCATGCGAGTTGCCAC
Found at i:82859198 original size:13 final size:13
Alignment explanation
Indices: 82859180--82859206 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82859170 GCTCGGCAGG
82859180 GACACGCCCATGT
1 GACACGCCCATGT
82859193 GACACGCCCATGT
1 GACACGCCCATGT
82859206 G
1 G
82859207 CGATTATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:82865505 original size:44 final size:44
Alignment explanation
Indices: 82865418--82865552 Score: 162
Period size: 45 Copynumber: 3.0 Consensus size: 44
82865408 GAATTATGTA
* *
82865418 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATAATACATGTGAC
1 ATCTGAACTCATTGAGTTGT-GTCTGAGTTCATGATATATGTGAC
* * *
82865463 ATCTGAACTTATTGAGATGTGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGAC
** * * *
82865507 ATCCAAACTCATTGAGTTGAGGTCTGGGTTCATGATATATATGAC
1 ATCTGAACTCATTGAGTTG-TGTCTGAGTTCATGATATATGTGAC
82865552 A
1 A
82865553 CATGTTTTGG
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 36 0.47
45 40 0.53
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (44 bp):
ATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGAC
Found at i:82865552 original size:45 final size:44
Alignment explanation
Indices: 82865423--82865552 Score: 152
Period size: 44 Copynumber: 2.9 Consensus size: 44
82865413 ATGTAATCTG
* * **
82865423 AACTCATTGAGTTGTGGTCTGAGTTCATAATACATGTGACATCTG
1 AACTCATTGAGTTG-GGTCTGAGTTCATGATATATGTGACATCCA
* * * *
82865468 AACTTATTGAGATGTGTTTGAGTTCATGATATATGTGACATCCA
1 AACTCATTGAGTTGGGTCTGAGTTCATGATATATGTGACATCCA
* *
82865512 AACTCATTGAGTTGAGGTCTGGGTTCATGATATATATGACA
1 AACTCATTGAGTTG-GGTCTGAGTTCATGATATATGTGACA
82865553 CATGTTTTGG
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
44 36 0.51
45 34 0.49
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGTTGGGTCTGAGTTCATGATATATGTGACATCCA
Found at i:82890315 original size:44 final size:46
Alignment explanation
Indices: 82890207--82890322 Score: 141
Period size: 44 Copynumber: 2.5 Consensus size: 46
82890197 GAGTGCCAGA
82890207 GTAAGACATGTCTGGGACATGCATCGGCCTCGACAAAGATATCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCCTC-ACAAAGATATCTAGT
* * * *
82890254 GTAAGACGTGT-TAGGGACATGCATCGG-CT-A-AGAGTTGTGCTAGT
1 GTAAGACATGTCT-GGGACATGCATCGGCCTCACAAAGATAT-CTAGT
82890298 GTAAGACATGTCTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
82890323 AACACGCATA
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.08
44 28 0.46
45 1 0.02
46 3 0.05
47 24 0.39
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCGGCCTCACAAAGATATCTAGT
Found at i:82897711 original size:47 final size:44
Alignment explanation
Indices: 82897607--82897771 Score: 136
Period size: 47 Copynumber: 3.6 Consensus size: 44
82897597 GATGAGGGCT
* * * * * **
82897607 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGTGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCGGCTAAAAGATGA--GCC
*
82897653 AGAGTAAGACGTGTCTGGGACATGCATCGGCCTCGACAAAGAT-AGCC
1 AGTGTAAGACGTGTCTGGGACATGCATCGG-CT--A-AAAGATGAGCC
* * * *
82897700 AGTGTAAGACGTGT-TAGGGACATGCATCGGCTAAGAGTTGTGCT
1 AGTGTAAGACGTGTCT-GGGACATGCATCGGCTAAAAGATGAGCC
*
82897744 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACGTGTCTGGGACATGCATC
82897772 AACACGCATA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 4 0.04
44 28 0.29
45 1 0.01
46 29 0.30
47 31 0.32
49 2 0.02
50 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACGTGTCTGGGACATGCATCGGCTAAAAGATGAGCC
Found at i:82904451 original size:12 final size:12
Alignment explanation
Indices: 82904434--82904461 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82904424 ACAGGATTGG
82904434 CACGGCCTAGCA
1 CACGGCCTAGCA
82904446 CACGGCCTAGCA
1 CACGGCCTAGCA
82904458 CACG
1 CACG
82904462 ACCTTGTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.43, G:0.25, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:82922399 original size:21 final size:22
Alignment explanation
Indices: 82922354--82922407 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
82922344 TACAAGGCTC
82922354 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGTCCAAGGG
**
82922376 ACACGCCCGTGTGG-CCCTGGG
1 ACACGCCCGTGTGGTCCAAGGG
*
82922397 ACATGCCCGTG
1 ACACGCCCGTG
82922408 CTACGAGCCG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 15 0.52
22 14 0.48
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15
Consensus pattern (22 bp):
ACACGCCCGTGTGGTCCAAGGG
Found at i:82926571 original size:22 final size:22
Alignment explanation
Indices: 82926543--82926595 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
82926533 CTGGATGGTA
82926543 ATCAATAACCATATCATAATCT
1 ATCAATAACCATATCATAATCT
82926565 ATCAATAACCATATCATAATCT
1 ATCAATAACCATATCATAATCT
*
82926587 TTCAATAAC
1 ATCAATAAC
82926596 TCAAGCCACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.45, C:0.23, G:0.00, T:0.32
Consensus pattern (22 bp):
ATCAATAACCATATCATAATCT
Found at i:82926572 original size:11 final size:12
Alignment explanation
Indices: 82926543--82926580 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
82926533 CTGGATGGTA
82926543 ATCAATAACCAT
1 ATCAATAACCAT
*
82926555 ATC-ATAATC-T
1 ATCAATAACCAT
82926565 ATCAATAACCAT
1 ATCAATAACCAT
82926577 ATCA
1 ATCA
82926581 TAATCTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.18
11 10 0.45
12 8 0.36
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (12 bp):
ATCAATAACCAT
Found at i:82942709 original size:29 final size:29
Alignment explanation
Indices: 82942676--82942775 Score: 155
Period size: 29 Copynumber: 3.4 Consensus size: 29
82942666 AAGTTATACC
*
82942676 GATTTGGCTTCAGGCCATGCATATCGGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
*
82942705 GATTTGGCTTCGGGCCATGCATATCAGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
* * *
82942734 GATTTGGCTTTGGGCAACGCATATCGGAT
1 GATTTGGCTTCGGGCCATGCATATCGGAT
82942763 GATTTGGCTTCGG
1 GATTTGGCTTCGG
82942776 ATCATGATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (29 bp):
GATTTGGCTTCGGGCCATGCATATCGGAT
Found at i:82943049 original size:24 final size:24
Alignment explanation
Indices: 82943022--82943070 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
82943012 GAGAAAGGTT
82943022 TGTAGTTAATGT-GAAATTGGCTGA
1 TGTAGTTAAT-TCGAAATTGGCTGA
*
82943046 TGTAGTTAATTCGAAATTGGTTGA
1 TGTAGTTAATTCGAAATTGGCTGA
82943070 T
1 T
82943071 TTACATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.04
24 22 0.96
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.41
Consensus pattern (24 bp):
TGTAGTTAATTCGAAATTGGCTGA
Found at i:82946135 original size:108 final size:110
Alignment explanation
Indices: 82945991--82946191 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
82945981 ATCCTTTTGA
* *
82945991 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAGTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
*
82946054 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
82946099 AACTTATCAGTGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAGTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
82946164 TGCCATGCATTGGCATGGTCTTATATGG
66 TGCCATGCATTGGCATGGTCTTACATGG
82946192 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 7 0.08
110 26 0.31
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAGTGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCATTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:82946146 original size:55 final size:52
Alignment explanation
Indices: 82945944--82946198 Score: 211
Period size: 55 Copynumber: 4.8 Consensus size: 52
82945934 ACACGGGTAC
* * * *
82945944 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATG-AA
*
82945993 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATGAA
* * * *
82946046 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G-AA
* * *
82946101 CTTATCAGTGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG-AA
* *
82946154 CCTTACCAATTGCCATG-CATTGGCATGGTCTTATATGGTATCCTT
1 -CTTACCAA-TGCCATGTC-TTGACATGGTCTTACAT-GTATCCTT
82946199 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 21, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 11 0.06
55 67 0.39
56 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (52 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATGAA
Found at i:82956649 original size:45 final size:45
Alignment explanation
Indices: 82956587--82956684 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
82956577 TCACTAGTAA
* * *
82956587 ATATGACATCTGAACTCATTAAGTTGTGGTCTGAGTTCATGATAT
1 ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
* * *
82956632 ATGTGACATCCGAACTCATCGAGTTGTGGTCTGAGTTCGTGATAC
1 ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
82956677 ATATGACA
1 ATATGACA
82956685 CATGTTTTGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (45 bp):
ATATGACATCCGAACTCATCAAGTTGTGGTCTGAGTTCATGATAC
Found at i:82958970 original size:173 final size:173
Alignment explanation
Indices: 82958674--82959022 Score: 662
Period size: 173 Copynumber: 2.0 Consensus size: 173
82958664 TTTTGGAAGA
*
82958674 AATTGCAAGAAGCTTTAGGTACAAAGGTACATTTTAGCACTGCATTTCACCCGCAAACAGATGGT
1 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCGCAAACAGATGGT
82958739 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
66 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
82958804 TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
131 TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
*
82958847 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCGCAAACGGATGGT
1 AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCGCAAACAGATGGT
* *
82958912 CAATCCTAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTCTTGAGTTTGAAGG
66 CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
82958977 TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
131 TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
82959020 AAT
1 AAT
82959023 AGCTTCCAAT
Statistics
Matches: 172, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 172 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (173 bp):
AATTGCAAGAAGCTTTAGGTACAAAGCTACATTTTAGCACTGCATTTCACCCGCAAACAGATGGT
CAATCCGAATGAGTTATTCAGATACTTGAGGATATGTTGCGTTGTTGCATTATTGAGTTTGAAGG
TAGCTAGGAGAAATATCTATCGCTGATTGAATTTGCTTACAAT
Found at i:82962430 original size:27 final size:27
Alignment explanation
Indices: 82962400--82962605 Score: 175
Period size: 27 Copynumber: 7.6 Consensus size: 27
82962390 TAGAATTATT
* * *
82962400 GAAATACCTTTGGTTTACAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
82962427 GAAATTCCCTTGACTTGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
82962454 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* * *
82962481 AAAATACCCTTGATTTGGAAAATTATC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
82962508 GAAATACTCC-T-ATTTACAAAATTACA
1 GAAATAC-CCTTGATTTGCAAAATTACC
* * **
82962534 AAAATACCCTTAACTTT-CAAAAATTATA
1 GAAATACCCTTGA-TTTGC-AAAATTACC
* *
82962562 GAAATACCATTGGTTTGCAAAATTACC
1 GAAATACCCTTGATTTGCAAAATTACC
* *
82962589 GAAATAACCTTGGTTTG
1 GAAATACCCTTGATTTG
82962606 TAGATTTACC
Statistics
Matches: 145, Mismatches: 28, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
25 2 0.01
26 18 0.12
27 102 0.70
28 23 0.16
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
GAAATACCCTTGATTTGCAAAATTACC
Found at i:82962910 original size:41 final size:41
Alignment explanation
Indices: 82962865--82962987 Score: 185
Period size: 41 Copynumber: 3.0 Consensus size: 41
82962855 GGAGGAAGAA
*
82962865 ATTGAGGATCGCATGGTTGTTTGACGAACGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
* * *
82962906 ATTGAGGATCGCATGGTTGCTTAATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
*
82962947 ATTAAGGATCGCATGGTTGCTTGACG-ACTGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGAAC-GTGGATCCACCG
82962988 GTGGCTTTTA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 1 0.01
41 72 0.99
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGAACGTGGATCCACCG
Found at i:82964172 original size:19 final size:19
Alignment explanation
Indices: 82964148--82964187 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
82964138 TTGATGTATG
82964148 TTTGGCTAATAGAAATGGC
1 TTTGGCTAATAGAAATGGC
82964167 TTTGGCTAATAGAAATGGC
1 TTTGGCTAATAGAAATGGC
82964186 TT
1 TT
82964188 ACTTTGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (19 bp):
TTTGGCTAATAGAAATGGC
Found at i:82966036 original size:19 final size:19
Alignment explanation
Indices: 82966012--82966050 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
82966002 AAAAGATGAG
82966012 AAAATAACATGATAATTTT
1 AAAATAACATGATAATTTT
*
82966031 AAAATAAGATGATAATTTT
1 AAAATAACATGATAATTTT
82966050 A
1 A
82966051 TTATCATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (19 bp):
AAAATAACATGATAATTTT
Found at i:82974698 original size:17 final size:17
Alignment explanation
Indices: 82974678--82974712 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82974668 TTATAAGAGT
82974678 ATCTAATTTACATTGCA
1 ATCTAATTTACATTGCA
82974695 ATCTAATTTACATTGCA
1 ATCTAATTTACATTGCA
82974712 A
1 A
82974713 GAGTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (17 bp):
ATCTAATTTACATTGCA
Found at i:82976176 original size:3 final size:3
Alignment explanation
Indices: 82976168--82976216 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
82976158 TCGCAGAATA
82976168 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
82976216 T
1 T
82976217 CTATTATTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:82976328 original size:21 final size:21
Alignment explanation
Indices: 82976302--82976341 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82976292 TAACGTGGTA
82976302 AGTTAACTAGCCACATCAGCT
1 AGTTAACTAGCCACATCAGCT
* *
82976323 AGTTAACTTGCCATATCAG
1 AGTTAACTAGCCACATCAG
82976342 AAGTCTCGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:82980665 original size:24 final size:24
Alignment explanation
Indices: 82980638--82980686 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
82980628 AAACCATGGT
82980638 TAAAAAGTCTAAGCGGTGGTGACA
1 TAAAAAGTCTAAGCGGTGGTGACA
82980662 TAAAAAGTCTAAGCGGTGGTGACA
1 TAAAAAGTCTAAGCGGTGGTGACA
82980686 T
1 T
82980687 GATTATAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (24 bp):
TAAAAAGTCTAAGCGGTGGTGACA
Found at i:82981927 original size:40 final size:40
Alignment explanation
Indices: 82981878--82982004 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 40
82981868 GAGCAATATT
*
82981878 TACTGAATCTACTGAAATGTATACACTATCGAGCCATACC
1 TACTGAATCTACTGAAATGTATGCACTATCGAGCCATACC
* * *
82981918 TACTAAATCTACTGAAATGTATGCATTTTCGAGCCATACC
1 TACTGAATCTACTGAAATGTATGCACTATCGAGCCATACC
* * *
82981958 TA-TCGAATCCACTGAAAAGTATGCTCTATCGAGCCATACC
1 TACT-GAATCTACTGAAATGTATGCACTATCGAGCCATACC
*
82981998 TATTGAA
1 TACTGAA
82982005 AGTTGCTCAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 73 0.97
41 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (40 bp):
TACTGAATCTACTGAAATGTATGCACTATCGAGCCATACC
Found at i:82984894 original size:18 final size:19
Alignment explanation
Indices: 82984871--82984910 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
82984861 TAAACAAGAA
82984871 TGTTTTTAAATAAA-AATT
1 TGTTTTTAAATAAAGAATT
*
82984889 TGTTTTTGAATAAAGAATT
1 TGTTTTTAAATAAAGAATT
82984908 TGT
1 TGT
82984911 AAAGTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (19 bp):
TGTTTTTAAATAAAGAATT
Found at i:82987459 original size:54 final size:54
Alignment explanation
Indices: 82987390--82987498 Score: 200
Period size: 54 Copynumber: 2.0 Consensus size: 54
82987380 CAATACTTGC
82987390 ATAAGTTGCTTTCAAAAGTTAATGGTGATCATCAAAAGCAACTTGAGTTGCTTA
1 ATAAGTTGCTTTCAAAAGTTAATGGTGATCATCAAAAGCAACTTGAGTTGCTTA
* *
82987444 ATAATTTGCTTTCAAAAGTTAATGGTGATCATCAAAAGGAACTTGAGTTGCTTA
1 ATAAGTTGCTTTCAAAAGTTAATGGTGATCATCAAAAGCAACTTGAGTTGCTTA
82987498 A
1 A
82987499 GAGTGAAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (54 bp):
ATAAGTTGCTTTCAAAAGTTAATGGTGATCATCAAAAGCAACTTGAGTTGCTTA
Found at i:82989142 original size:50 final size:50
Alignment explanation
Indices: 82989083--82989183 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
82989073 CCGGGTAAGT
82989083 TTGTACGGTTTAAAATTTAACATCTATATAAATTGTTGAATACTATAACA
1 TTGTACGGTTTAAAATTTAACATCTATATAAATTGTTGAATACTATAACA
*
82989133 TTGTACGGTTTAAAATTTAACATCTATATAAATTGTTGAATAGTATAACA
1 TTGTACGGTTTAAAATTTAACATCTATATAAATTGTTGAATACTATAACA
82989183 T
1 T
82989184 GGTAAAATAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.41
Consensus pattern (50 bp):
TTGTACGGTTTAAAATTTAACATCTATATAAATTGTTGAATACTATAACA
Found at i:82989455 original size:35 final size:35
Alignment explanation
Indices: 82989406--82989517 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 35
82989396 CTTTGTTTGA
* * **
82989406 TGTGTTCCGCAGGGATTAAATCTTATGAGCATTGG
1 TGTGTTTCGAAGGGATTAGCTCTTATGAGCATTGG
* *
82989441 TGTGTTTCGAAGGGATTAGCTCTTATGAGCAATGA
1 TGTGTTTCGAAGGGATTAGCTCTTATGAGCATTGG
** * *
82989476 TGTGTTT-GGTGGGATTGGCTCGTATGAGCATCTGG
1 TGTGTTTCGAAGGGATTAGCTCTTATGAGCAT-TGG
82989511 TGTGTTT
1 TGTGTTT
82989518 TGGGTGTATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
34 19 0.30
35 45 0.70
ACGTcount: A:0.19, C:0.12, G:0.32, T:0.38
Consensus pattern (35 bp):
TGTGTTTCGAAGGGATTAGCTCTTATGAGCATTGG
Found at i:82991221 original size:21 final size:21
Alignment explanation
Indices: 82991195--82991250 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
82991185 TGTCAATTTT
* *
82991195 CACACGGGCGTGTGCCTTGGC
1 CACACGGGCGTGTGCCCTAGC
* * *
82991216 CACACGGCCCTGTCCCCTAGC
1 CACACGGGCGTGTGCCCTAGC
*
82991237 CACACGGGTGTGTG
1 CACACGGGCGTGTG
82991251 AGATTTCCAC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.12, C:0.38, G:0.32, T:0.18
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCTAGC
Found at i:82994273 original size:30 final size:30
Alignment explanation
Indices: 82994215--82994274 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
82994205 TTCCCGAGCC
* *
82994215 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
* *
82994245 TAGGGGCAAAAATGTAATTTTACCAAAGTT
1 TAGGGGCAAAAATGTAATTATACAAAAGTT
82994275 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATACAAAAGTT
Found at i:82999438 original size:21 final size:21
Alignment explanation
Indices: 82999413--82999452 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82999403 ATCGGTACAT
82999413 TTTAAAAAATATCGATACTCA
1 TTTAAAAAATATCGATACTCA
* *
82999434 TTTAAAAAGTATTGATACT
1 TTTAAAAAATATCGATACT
82999453 TGTTGGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (21 bp):
TTTAAAAAATATCGATACTCA
Found at i:83002248 original size:40 final size:40
Alignment explanation
Indices: 83002170--83002392 Score: 308
Period size: 40 Copynumber: 5.5 Consensus size: 40
83002160 ACCCAAGTAT
* *
83002170 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
83002209 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
83002249 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
83002289 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA--GCACAAATGC
* *
83002331 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
83002371 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
83002393 CATCCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 12 0.07
40 116 0.71
41 1 0.01
42 35 0.21
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:83002365 original size:82 final size:80
Alignment explanation
Indices: 83002170--83002392 Score: 315
Period size: 82 Copynumber: 2.8 Consensus size: 80
83002160 ACCCAAGTAT
* * * *
83002170 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* **
83002234 CACTAGCATGAATGC
66 CACTACCACAAATGC
* *
83002249 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
83002313 CAACTACTCCACAAATGC
66 C-ACTA--CCACAAATGC
*
83002331 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
83002393 CATCCGAATA
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
82 66 0.52
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTACCACAAATGC
Found at i:83009637 original size:51 final size:49
Alignment explanation
Indices: 83009582--83009711 Score: 122
Period size: 51 Copynumber: 2.6 Consensus size: 49
83009572 TATTTTTCTT
83009582 TAATTAATTTAAATTAATTAAGAGATAAATCATAGAAAT-TTACATTATCAC
1 TAATTAA-TTAAATTAATTAAGAGATAAAT-AT-GAAATATTACATTATCAC
* * * * ** *
83009633 TAATTAAAATAAAATAATTAAGTGAT-AATATTAAATGATTATTTTATCTC
1 TAATT-AATTAAATTAATTAAGAGATAAATATGAAAT-ATTACATTATCAC
*
83009683 TAATTAATTAAGTTAA-TAAGAGATAAATA
1 TAATTAATTAAATTAATTAAGAGATAAATA
83009712 CTAAATAAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
48 11 0.17
49 14 0.22
50 17 0.27
51 20 0.31
52 2 0.03
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (49 bp):
TAATTAATTAAATTAATTAAGAGATAAATATGAAATATTACATTATCAC
Found at i:83016606 original size:101 final size:101
Alignment explanation
Indices: 83016482--83016691 Score: 278
Period size: 101 Copynumber: 2.1 Consensus size: 101
83016472 GGCCCTGCCT
** *
83016482 TGGTCTTACATTCGTAGTGCCATAACCCAATTATGGTCTTATCGTCAGA-ATGCCATAGCCTAGA
1 TGGTCTTACATTCAAAGTGCCATAACCCAATTATGATCTTATCGTCA-ATATGCCATAGCCTAGA
** *
83016546 TATGGTCTTACATATAATTACTATCATGGTCCAACCA
65 TATGGTCTTACATATAAACACTACCATGGTCCAACCA
* * * * * *
83016583 TGGTCTTACGTTCAAAGTGCCATAACCTAGTTATGATCTTTTCGTTAATATGCCATAGCCTAGCT
1 TGGTCTTACATTCAAAGTGCCATAACCCAATTATGATCTTATCGTCAATATGCCATAGCCTAGAT
* *
83016648 ATGGTCTTACATATAAACACTGCCATGGTCCAACCC
66 ATGGTCTTACATATAAACACTACCATGGTCCAACCA
83016684 TGGTCTTA
1 TGGTCTTA
83016692 TCCGTCAATT
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 93 0.99
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (101 bp):
TGGTCTTACATTCAAAGTGCCATAACCCAATTATGATCTTATCGTCAATATGCCATAGCCTAGAT
ATGGTCTTACATATAAACACTACCATGGTCCAACCA
Found at i:83021296 original size:26 final size:26
Alignment explanation
Indices: 83021267--83021318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
83021257 TTGATCTCAA
83021267 TTATAAAAAGAATCTAG-CTCAGACGG
1 TTATAAAAAGAATCTAGCCT-AGACGG
*
83021293 TTATAAAAAGGATCTAGCCTAGACGG
1 TTATAAAAAGAATCTAGCCTAGACGG
83021319 GTGTTCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.23
Consensus pattern (26 bp):
TTATAAAAAGAATCTAGCCTAGACGG
Found at i:83024341 original size:17 final size:17
Alignment explanation
Indices: 83024316--83024362 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
83024306 TTAATTTGGT
83024316 AAATAAATAAAACCTAA
1 AAATAAATAAAACCTAA
* *
83024333 AAATTAATAAAACTTAA
1 AAATAAATAAAACCTAA
83024350 AATATGAAATAAA
1 AA-AT-AAATAAA
83024363 CCATCACCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 17 0.68
18 2 0.08
19 6 0.24
ACGTcount: A:0.68, C:0.06, G:0.02, T:0.23
Consensus pattern (17 bp):
AAATAAATAAAACCTAA
Found at i:83024510 original size:78 final size:78
Alignment explanation
Indices: 83024366--83024522 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 78
83024356 AAATAAACCA
* * *
83024366 TCACCACCCTCATTTATTCTTCTTGAAATCGAAACACTGTTGAAGATAGCTTGGGATCATTTAGT
1 TCACAACCCTCATTTATTCTTCTTGAAATCGAAACACTGTTGAAGATAGCTTGGGAGCATTCAGT
*
83024431 CAAATTATTTCAT
66 CAAACTATTTCAT
83024444 TCACAACCCTCATTTATTCTTCTTGAAATCGAAACACTGTTGAAGATAGCTTGGGAGCATTCAGT
1 TCACAACCCTCATTTATTCTTCTTGAAATCGAAACACTGTTGAAGATAGCTTGGGAGCATTCAGT
83024509 CAAACTATTTCAT
66 CAAACTATTTCAT
83024522 T
1 T
83024523 TGCATGTAAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (78 bp):
TCACAACCCTCATTTATTCTTCTTGAAATCGAAACACTGTTGAAGATAGCTTGGGAGCATTCAGT
CAAACTATTTCAT
Found at i:83029996 original size:26 final size:26
Alignment explanation
Indices: 83029966--83030021 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
83029956 TGAAATGCCC
83029966 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83029992 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
83030018 ATCA
1 ATCA
83030022 ATTTTTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:83036333 original size:47 final size:48
Alignment explanation
Indices: 83036263--83036394 Score: 203
Period size: 47 Copynumber: 2.8 Consensus size: 48
83036253 CTCAATCGAT
*
83036263 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACCG
* * *
83036310 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCACTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACCG
* *
83036358 AAATACCTATACCATGGCCCGTAGTCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
83036395 TCACTCGTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 41 0.53
48 36 0.47
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCACCG
Found at i:83039624 original size:45 final size:45
Alignment explanation
Indices: 83039458--83039642 Score: 168
Period size: 45 Copynumber: 4.2 Consensus size: 45
83039448 ATGCTATCTC
* ** *
83039458 ATATCGATGCC-ACTGTCCCAGACAGGGTCTTACACG-AATCA-A-
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACTTGAAAACACAT
* * * ** * *
83039500 ATA-CGATGCCGATGTCTCAGACATGGTCTTAC-ACATAACCATAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACTTGA-AAACACAT
**
83039544 ATAAATCGATGCCAACGT-CCAGATGTGGTCTTACTTGAAAACACAT
1 AT--ATCGATGCCAACGTCCCAGACATGGTCTTACTTGAAAACACAT
83039590 ATATCGATGCCAACGTCCCAGACATGGTCTTACTTGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACTTGAAAACACAT
83039635 ATATCGAT
1 ATATCGAT
83039643 ATCCTATGGA
Statistics
Matches: 116, Mismatches: 17, Indels: 17
0.77 0.11 0.11
Matches are distributed among these distances:
41 24 0.21
42 8 0.07
43 1 0.01
44 16 0.14
45 34 0.29
46 22 0.19
47 11 0.09
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACTTGAAAACACAT
Found at i:83041014 original size:7 final size:7
Alignment explanation
Indices: 83041004--83041028 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
83040994 ATTAAGTAGA
83041004 TATTTAT
1 TATTTAT
83041011 TATTTAT
1 TATTTAT
83041018 TATTTAT
1 TATTTAT
83041025 TATT
1 TATT
83041029 AATAAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTTAT
Found at i:83042183 original size:23 final size:24
Alignment explanation
Indices: 83042152--83042200 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
83042142 TATTGAATTG
* *
83042152 ATTGTATATTGAAATGGAACTGAA
1 ATTGTATATGGAAATGAAACTGAA
*
83042176 ATTG-ATATGGAAATGAAATTGAA
1 ATTGTATATGGAAATGAAACTGAA
83042199 AT
1 AT
83042201 AAATAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.45, C:0.02, G:0.20, T:0.33
Consensus pattern (24 bp):
ATTGTATATGGAAATGAAACTGAA
Found at i:83042185 original size:17 final size:17
Alignment explanation
Indices: 83042159--83042200 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
83042149 TTGATTGTAT
*
83042159 ATTGAAATGGAACTGAA
1 ATTGAAATGGAAATGAA
*
83042176 ATTGATATGGAAATGAA
1 ATTGAAATGGAAATGAA
83042193 ATTGAAAT
1 ATTGAAAT
83042201 AAATAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.21, T:0.29
Consensus pattern (17 bp):
ATTGAAATGGAAATGAA
Found at i:83042317 original size:13 final size:14
Alignment explanation
Indices: 83042294--83042323 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
83042284 TTTGAGAAGG
83042294 GATTTGGAGATG-T
1 GATTTGGAGATGCT
83042307 GATTTGGAGATGCT
1 GATTTGGAGATGCT
83042321 GAT
1 GAT
83042324 GTTTATATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.23, C:0.03, G:0.37, T:0.37
Consensus pattern (14 bp):
GATTTGGAGATGCT
Found at i:83042403 original size:29 final size:28
Alignment explanation
Indices: 83042364--83042447 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
83042354 CACTCTGTGC
*
83042364 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTGGGA-GGATTATAT
*
83042393 TATTTTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTGGGAGGATTATAT
* * * *
83042421 GATACTTGTGTGTTAT-GGAGAATTATA
1 TATTCTGGTGTGTT-TGGGAGGATTATA
83042448 CTGGTGTGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
28 29 0.62
29 18 0.38
ACGTcount: A:0.21, C:0.02, G:0.29, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTGGGAGGATTATAT
Found at i:83042417 original size:28 final size:29
Alignment explanation
Indices: 83042364--83042434 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 29
83042354 CACTCTGTGC
*
83042364 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTGGGATGGATTATAT
*
83042393 TATTTTGGTGTGTTTGGGA-GGATTATAT
1 TATTCTGGTGTGTTTGGGATGGATTATAT
* * *
83042421 GATACTTGTGTGTT
1 TATTCTGGTGTGTT
83042435 ATGGAGAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.17, C:0.03, G:0.30, T:0.51
Consensus pattern (29 bp):
TATTCTGGTGTGTTTGGGATGGATTATAT
Found at i:83047125 original size:46 final size:46
Alignment explanation
Indices: 83046966--83047139 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
83046956 GTTTGGGCAT
* * *
83046966 CCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGGATG-GAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
83047011 CCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
83047056 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
83047104 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83047140 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 29 0.28
46 45 0.43
47 27 0.26
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:83051747 original size:50 final size:50
Alignment explanation
Indices: 83051667--83051939 Score: 336
Period size: 50 Copynumber: 5.4 Consensus size: 50
83051657 CTAATCAAAC
* * *
83051667 AAAGCCTTTGTGGTGAGTTCTCT-AATAGGCCTATGTGCCATATTATCTAG
1 AAAGCCTTTGTGGCGAGTTATCTGAA-AGGCCTATGTGGCATATTATCTAG
* * * * *
83051717 AAAGCATTTGTGGCAAGTTATCTGAAAGGCCTATGTGACATATTATTTGG
1 AAAGCCTTTGTGGCGAGTTATCTGAAAGGCCTATGTGGCATATTATCTAG
* *
83051767 AAAGCCTTTGTGGTGAGTTATCT-AAGAGGCCTATGTGGCATATTATCTGG
1 AAAGCCTTTGTGGCGAGTTATCTGAA-AGGCCTATGTGGCATATTATCTAG
*
83051817 AAAGCCTTTGTGGCGAGTTATCTGAAAGGCATATGTGGCATATTATCT-G
1 AAAGCCTTTGTGGCGAGTTATCTGAAAGGCCTATGTGGCATATTATCTAG
* * *
83051866 AAAAGGCTTTGTGGCGAGTTATTTGAAAGGCCTATGGTGGCATATTATTTAG
1 -AAAGCCTTTGTGGCGAGTTATCTGAAAGGCCTAT-GTGGCATATTATCTAG
* *
83051918 GAAGCCTTAGTGGCGAAGTTAT
1 AAAGCCTTTGTGGCG-AGTTAT
83051940 TTGGAAAGCC
Statistics
Matches: 195, Mismatches: 21, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
49 3 0.02
50 156 0.80
51 29 0.15
52 7 0.04
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (50 bp):
AAAGCCTTTGTGGCGAGTTATCTGAAAGGCCTATGTGGCATATTATCTAG
Found at i:83051865 original size:25 final size:25
Alignment explanation
Indices: 83051693--83051913 Score: 165
Period size: 25 Copynumber: 8.8 Consensus size: 25
83051683 GTTCTCTAAT
*
83051693 AGGCCTATGTGCCATATTATCTAGAA
1 AGGCCTATGTGGCATATTATCT-GAA
* *
83051719 A-GCATTTGTGGCA-AGTTATCTGAA
1 AGGCCTATGTGGCATA-TTATCTGAA
* *
83051743 AGGCCTATGTGACATATTATTTGGAA
1 AGGCCTATGTGGCATATTATCT-GAA
*
83051769 A-GCCTTTGTGG--TGAGTTATCT-AA
1 AGGCCTATGTGGCAT-A-TTATCTGAA
83051792 GAGGCCTATGTGGCATATTATCTGGAA
1 -AGGCCTATGTGGCATATTATCT-GAA
* *
83051819 A-GCCTTTGTGGCGA-GTTATCTGAA
1 AGGCCTATGTGGC-ATATTATCTGAA
*
83051843 AGGCATATGTGGCATATTATCTGAAA
1 AGGCCTATGTGGCATATTATCTG-AA
* * *
83051869 AGG-CTTTGTGGCGA-GTTATTTGAA
1 AGGCCTATGTGGC-ATATTATCTGAA
83051893 AGGCCTATGGTGGCATATTAT
1 AGGCCTAT-GTGGCATATTAT
83051914 TTAGGAAGCC
Statistics
Matches: 153, Mismatches: 22, Indels: 40
0.71 0.10 0.19
Matches are distributed among these distances:
23 3 0.02
24 17 0.11
25 106 0.69
26 24 0.16
27 3 0.02
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (25 bp):
AGGCCTATGTGGCATATTATCTGAA
Found at i:83051945 original size:25 final size:25
Alignment explanation
Indices: 83051876--83051951 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
83051866 AAAAGGCTTT
* *
83051876 GTGGCG-AGTTATTTGAAAGGCCTATG
1 GTGGCGAAGTTATTTGGAA-GCCT-TA
83051902 GTGGC-ATA-TTATTTAGGAAGCCTTA
1 GTGGCGA-AGTTATTT-GGAAGCCTTA
83051927 GTGGCGAAGTTATTTGGAAAGCCTT
1 GTGGCGAAGTTATTTGG-AAGCCTT
83051952 TGCTGCAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
25 9 0.21
26 29 0.69
27 4 0.10
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (25 bp):
GTGGCGAAGTTATTTGGAAGCCTTA
Done.