Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 249 of 362
Found at i:84073753 original size:29 final size:29
Alignment explanation
Indices: 84073711--84073768 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
84073701 TAATGTAAAT
84073711 GGGCCAAAATTAGCCTATAACAGCTGCCC
1 GGGCCAAAATTAGCCTATAACAGCTGCCC
84073740 GGGCCAAAATTAGCCTATAACAGCTGCCC
1 GGGCCAAAATTAGCCTATAACAGCTGCCC
84073769 CTCTTTGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (29 bp):
GGGCCAAAATTAGCCTATAACAGCTGCCC
Found at i:84074432 original size:73 final size:74
Alignment explanation
Indices: 84074306--84074448 Score: 218
Period size: 73 Copynumber: 1.9 Consensus size: 74
84074296 CAGACATTAA
*
84074306 AAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCA-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
84074371 GATTTTTGAC
65 GATTTTTGAC
* * *
84074381 AAACAGAAATTTAAAATACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCACGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTT
84074444 GATTT
65 GATTT
84074449 AAAAACAGAC
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
72 2 0.03
73 40 0.63
75 21 0.33
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (74 bp):
AAACAGAAATTGAAAATACCTCACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAC
Found at i:84074648 original size:15 final size:15
Alignment explanation
Indices: 84074628--84074660 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
84074618 TTGATTTTTG
*
84074628 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
84074643 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
84074658 AAA
1 AAA
84074661 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:84074825 original size:14 final size:14
Alignment explanation
Indices: 84074802--84074837 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
84074792 GTTGATTTTT
*
84074802 TTTGACAAGCAGAA
1 TTTGAAAAGCAGAA
84074816 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
84074830 ATTGAAAA
1 TTTGAAAA
84074838 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:84074846 original size:90 final size:86
Alignment explanation
Indices: 84074375--84074892 Score: 487
Period size: 90 Copynumber: 5.9 Consensus size: 86
84074365 TGAGTTGATT
*
84074375 TTTGACAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
84074440 AGTTGA--TTT-AAAAACAGACA
65 AGTTGATTTTTGAAAAACATA-A
* * * * *
84074460 -TT-AAAACAGAAATTGAAAGTAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATA
1 TTTGAAAACAGAAATTGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* ** *
84074522 TGAGTTGGCTTTTTTTTTAAAACTTAA
63 TGAGTT-G--ATTTTTGAAAAACATAA
** * * * * *
84074549 TTTGAAAAGCCA-ATTTTGAAAGTACCTC-GACATGTGACCCGAGGCTCAACTTACCTCTCACAA
1 TTTGAAAA--CAGAAATTGAAAATACCTCAG-C--GTGTCCTGAGGCTCAACTCACCTCTCGCAA
* *
84074612 TATAAGTTGATTTTTGAAAAATATAA
61 TATGAGTTGATTTTTGAAAAACATAA
* * **
84074638 ATTGAAAAAATAGAAATTGAAAATACCTCAGCGTG-CCATGAGGCTCAACTCACCTCTTACAATA
1 TTTG--AAAACAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATA
*
84074702 TGAGTTGATTTTTGAAAAGCATAA
63 TGAGTTGATTTTTGAAAAACATAA
* * *
84074726 ATTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
84074791 AGTTGATTTTTTTTGACAAGCAGAA
65 AGTTGA---TTTTTGAAAAACATAA
* *
84074816 TTTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
84074881 AGTTGATTTTTG
65 AGTTGATTTTTG
84074893 GCAAAAAGAA
Statistics
Matches: 360, Mismatches: 47, Indels: 50
0.79 0.10 0.11
Matches are distributed among these distances:
82 21 0.06
83 1 0.00
84 35 0.10
85 3 0.01
87 67 0.19
88 53 0.15
89 24 0.07
90 99 0.28
91 13 0.04
92 42 0.12
93 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (86 bp):
TTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACATAA
Found at i:84074859 original size:177 final size:169
Alignment explanation
Indices: 84074376--84074964 Score: 557
Period size: 177 Copynumber: 3.4 Consensus size: 169
84074366 GAGTTGATTT
* *
84074376 TTGACAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAAC-GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * *
84074441 GTTGA--TTT-AAAAACAGACATT-AAAACAGAAATTGAAAGTAGCTCAGCACGTGAGCC-AAGG
65 GTTGATTTTTGAAAAACAGA-ATTGAAAACAGAAATTGAAAATACCTCAGCA--TG-CCCTGAGG
* * *
84074501 CTCAACTCACTTCTCGCAATATGAGTTGGCTTTTTTTTTAAAA-CTTAA
126 CTCAACTCACCTCTCGCAATATGAGTT-G---ATTTTTGAAAAGC-TAA
* * * * * * * *
84074549 TTTGAAAAGCCAATTTTGAAAGTACCTC-GACATGTGACCCGAGGCTCAACTTACCTCTCACAAT
1 -TTGAAAAACGAA-ATTGAAAATACCTCAG-C--GTGTCCTGAGGCTCAACTCACCTCTCGCAAT
* * * * * *
84074613 ATAAGTTGATTTTTGAAAAATATAAATTGAAAAAATAGAAATTGAAAATACCTCAGCGTGCCATG
61 ATGAGTTGATTTTTGAAAAACA-GAATTG--AAAACAGAAATTGAAAATACCTCAGCATGCCCTG
**
84074678 AGGCTCAACTCACCTCTTACAATATGAGTTGATTTTTGAAAAGCATAAA
123 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGC-T-AA
*
84074727 TTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAAC-GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
84074792 GTTGATTTTTTTTGACAAGCAGAATTTGAAAAGCAGAAATTGAAAATACCTCAGCATGCCCTGAG
65 GTTGA---TTTTTGAAAAACAGAA-TTGAAAA-CAGAAATTGAAAATACCTCAGCATGCCCTGAG
84074857 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----GC---
125 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCTAA
*
84074895 ---AAAAA-GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAAACGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
84074956 TTGATTTTT
66 TTGATTTTT
84074965 TTTGAAAACA
Statistics
Matches: 347, Mismatches: 47, Indels: 56
0.77 0.10 0.12
Matches are distributed among these distances:
160 5 0.01
163 58 0.17
165 5 0.01
173 5 0.01
174 19 0.05
175 35 0.10
176 48 0.14
177 87 0.25
178 21 0.06
179 11 0.03
180 30 0.09
182 23 0.07
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (169 bp):
TTGAAAAACGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAAACAGAATTGAAAACAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCTAA
Found at i:84074945 original size:73 final size:73
Alignment explanation
Indices: 84074826--84074964 Score: 251
Period size: 73 Copynumber: 1.9 Consensus size: 73
84074816 TTTGAAAAGC
*
84074826 AGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
84074891 TGGCAAAA
66 TGGCAAAA
* *
84074899 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
84074964 T
66 T
84074965 TTTGAAAACA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 63 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (73 bp):
AGAAATTGAAAATACCTCAACATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGGCAAAA
Found at i:84078767 original size:40 final size:40
Alignment explanation
Indices: 84078564--84078767 Score: 222
Period size: 40 Copynumber: 5.1 Consensus size: 40
84078554 CGGAATTTAA
** *
84078564 CCGGATATAGCTA-CTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TATCTCGCACAAATGCCTTCGGGACTTAGC
* *
84078604 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTATCTCGCACAAATGCCTTCGGGACTTAGC
* *
84078643 CCGGA-ATTAGTATCTCGCACAAATGCATTCGGGACTTAAC
1 CCGGATA-TAGTATCTCGCACAAATGCCTTCGGGACTTAGC
* *
84078683 CCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTATCTCGCACAAATGCCTTCGGGA-CTTAGC
* *
84078723 CCGGATATGGTCA-CTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ATC-TCGCACAAATGCCTTCGGGACTTAGC
84078763 CCGGA
1 CCGGA
84078768 CATCATTCAA
Statistics
Matches: 140, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 38 0.27
40 89 0.64
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTATCTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84089533 original size:20 final size:21
Alignment explanation
Indices: 84089498--84089537 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
84089488 CACCTAATAA
84089498 ATTTATTTCTTAAACAAAAAG
1 ATTTATTTCTTAAACAAAAAG
*
84089519 ATTTA-TTCTTGAACAAAAA
1 ATTTATTTCTTAAACAAAAA
84089538 TGAAGGCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
ATTTATTTCTTAAACAAAAAG
Found at i:84090563 original size:10 final size:10
Alignment explanation
Indices: 84090548--84090572 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84090538 CATTAAAAAA
84090548 ATATATACAT
1 ATATATACAT
84090558 ATATATACAT
1 ATATATACAT
84090568 ATATA
1 ATATA
84090573 ATAAACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATACAT
Found at i:84090581 original size:23 final size:23
Alignment explanation
Indices: 84090554--84090599 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
84090544 AAAAATATAT
84090554 ACATATA-T-ATACATATATAATAA
1 ACATATACTAATA-ATA-ATAATAA
84090577 ACATATACTAATAATAATAATAA
1 ACATATACTAATAATAATAATAA
84090600 TAATAATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 4 0.19
25 3 0.14
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (23 bp):
ACATATACTAATAATAATAATAA
Found at i:84092086 original size:14 final size:16
Alignment explanation
Indices: 84092067--84092099 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
84092057 GAAAAAGTTA
84092067 ATTTTTATT-T-TTTT
1 ATTTTTATTATATTTT
84092081 ATTTTTATTATATTTT
1 ATTTTTATTATATTTT
84092097 ATT
1 ATT
84092100 ATATGTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (16 bp):
ATTTTTATTATATTTT
Found at i:84092098 original size:10 final size:10
Alignment explanation
Indices: 84092072--84092115 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
84092062 AGTTAATTTT
*
84092072 TATTTTTTTA
1 TATTTTATTA
84092082 T-TTTTATTA
1 TATTTTATTA
84092091 TATTTTATTA
1 TATTTTATTA
84092101 TATGTTTATATA
1 TAT-TTTAT-TA
84092113 TAT
1 TAT
84092116 ACGTATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 8 0.27
10 12 0.40
11 5 0.17
12 5 0.17
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (10 bp):
TATTTTATTA
Found at i:84093323 original size:13 final size:13
Alignment explanation
Indices: 84093305--84093340 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
84093295 GATTGACTCT
*
84093305 TTAAAAATAGACA
1 TTAAAAATAGAAA
84093318 TTAAAAATAGAAA
1 TTAAAAATAGAAA
*
84093331 TTGAAAATAG
1 TTAAAAATAG
84093341 CTCAGCGCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.25
Consensus pattern (13 bp):
TTAAAAATAGAAA
Found at i:84093794 original size:87 final size:87
Alignment explanation
Indices: 84093392--84094013 Score: 593
Period size: 89 Copynumber: 7.1 Consensus size: 87
84093382 GAGTTGATTT
* * * *
84093392 TTGACAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** *
84093457 TTTGA--TTT-AAAAATAGACA
66 GTTGATTTTTGAAAAGCAGAAA
* * * * * *
84093476 TT--AAAACAGAAATTGAAAGTAGCTCAGCACGTGAGCC-AAAGCTCAACTCACTTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCA--ACGTG-CCCTGAGGCTCAACTCACCTCTCGCAATA
* ** ** *
84093538 TGAGTTGGCTTTTTTTTTAAA-CTTAAT
63 TGAGTT-G--ATTTTTGAAAAGCAGAAA
* ** * * *
84093565 TTGAAAAGCCA-ATTTTGAAAGTACCTCGACATGTGACCC-GAGGCTCAACTTACCTCTCGCAAT
1 TTGAAAA-ACAGAAATTGAAAATACCTC-A-ACGTG-CCCTGAGGCTCAACTCACCTCTCGCAAT
* ** *
84093628 ATAAGTTGATTTTTGAAAAATATAAA
62 ATGAGTTGATTTTTGAAAAGCAGAAA
*
84093654 TTGAAAAAACAGAAATTTG-AAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCACAATAT
1 TTG-AAAAACAGAAA-TTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
* *
84093718 GAGTTGATTTTTGGAAAGCATAAA
64 GAGTTGATTTTTGAAAAGCAGAAA
* * * * * *
84093742 TTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
84093807 GTTGATTTTTTTGAAAAGCAGGAA
66 GTTGA--TTTTTGAAAAGCAGAAA
* *
84093831 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
84093896 GTTAATTTTTTTGAAAAGCAGAAT
66 GTTGA--TTTTTGAAAAGCAGAAA
*
84093920 TTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
84093985 GTTGATTTTTTGCAAAA--AGAAA
66 GTTGA-TTTTTG-AAAAGCAGAAA
84094007 TTGAAAA
1 TTGAAAA
84094014 TACCTCAACG
Statistics
Matches: 452, Mismatches: 64, Indels: 41
0.81 0.11 0.07
Matches are distributed among these distances:
82 20 0.04
84 33 0.07
85 3 0.01
86 3 0.01
87 73 0.16
88 66 0.15
89 181 0.40
90 17 0.04
91 53 0.12
92 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAGCAGAAA
Found at i:84093836 original size:14 final size:14
Alignment explanation
Indices: 84093817--84093851 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
84093807 GTTGATTTTT
* *
84093817 TTGAAAAGCAGGAA
1 TTGAAAAACAGAAA
84093831 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
84093845 TTGAAAA
1 TTGAAAA
84093852 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:84093924 original size:14 final size:14
Alignment explanation
Indices: 84093905--84093940 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
84093895 AGTTAATTTT
84093905 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
84093919 TTTGAAAAGCAGAA
1 TTTGAAAAGCAGAA
*
84093933 ATTGAAAA
1 TTTGAAAA
84093941 TACCTCAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (14 bp):
TTTGAAAAGCAGAA
Found at i:84093969 original size:265 final size:258
Alignment explanation
Indices: 84093391--84094069 Score: 698
Period size: 265 Copynumber: 2.6 Consensus size: 258
84093381 TGAGTTGATT
* * *
84093391 TTTGACAAACAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGA-AAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
84093456 ATTTGA--TTTAAA-AATAGACATT-AAAACAGAAATT-GAAAGTAGCTCAGCACGTGAGCC-AA
65 AGTTGATTTTTAAAGCATA-A-ATTAAAAAC-GAAATTGGAAA-TACCTCAG--CGTG-TCCTAA
* * * ** ** * **
84093515 AGCTCAACTCACTTCTCGCAATATGAGTTGGCTTTTTTTTTAAACTTAATTTGAAAAGCCAATTT
123 GGCTCAACTCACCTCTCGCAATATGAGTT-GATTTTTTTGAAAACGGAATTTGAAAAGACAAAAT
* * *
84093580 TGAAAGTACCTCGACATGTGACCCGAGGCTCAACTTACCTCTCGCAATATAAGTTGATTTTTGAA
187 TGAAAATACCTCGACA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTGAA
* *
84093645 AAATATAA
251 AAACAGAA
* *
84093653 ATTGAAAAAACAGAAATTTG-AAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCACAATA
1 TTTG--AAAACAGAAA-TTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATA
84093717 TGAGTTGATTTTTGGAAAGCATAAATTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTAAG
63 TGAGTTGATTTTT--AAAGCATAAATT-AAAAAC-GAAATTGGAAATACCTCAGCGTGTCCTAAG
*
84093782 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAAGCAGGAA-TTGAAAA-ACAGAAA
124 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA-C-GGAATTTGAAAAGACA-AAA
* * *
84093845 TTGAAAATACCTC-AGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTT
186 TTGAAAATACCTCGA-CAGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTAA--TTTTT
*
84093908 GAAAAGCAGAA
248 GAAAAACAGAA
84093919 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAA-CAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
84093984 AGTTGATTTTT--TGC-------AAAAA-GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAA
65 AGTTGATTTTTAAAGCATAAATTAAAAACGAAATTGGAAATACCTCAGCGTGTCCTAAGGCTCAA
84094039 CTCACCTCTCGCAATATGAGTTGATTTTTTT
130 CTCACCTCTCGCAATATGAGTTGATTTTTTT
84094070 TTTGAAAACA
Statistics
Matches: 360, Mismatches: 37, Indels: 51
0.80 0.08 0.11
Matches are distributed among these distances:
251 63 0.17
253 5 0.01
261 2 0.01
262 3 0.01
263 57 0.16
264 45 0.12
265 81 0.22
266 73 0.20
267 6 0.02
268 21 0.06
269 4 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (258 bp):
TTTGAAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTAAAGCATAAATTAAAAACGAAATTGGAAATACCTCAGCGTGTCCTAAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACGGAATTTGAAAAGACAAAATTGAAAATAC
CTCGACAGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTAATTTTTGAAAAACAGAA
Found at i:84093990 original size:178 final size:172
Alignment explanation
Indices: 84093391--84094069 Score: 660
Period size: 178 Copynumber: 3.9 Consensus size: 172
84093381 TGAGTTGATT
* * *
84093391 TTTGACAAA-CAGAAATTTAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTTGA-AAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * * * *
84093455 GATTTGA--TTTAAAAATAGACATTAAAACAGAAATTGAAAGTAGCTCAGCACGTGAGCC-AAAG
65 GAGTTGATTTTTAAAAACAGA-ATTAAAACAGAAATTGAAAATACCTCA--ACGTG-TCCTGAGG
* * ** *
84093517 CTCAACTCACTTCTCGCAATATGAGTTGGCTTTTTTTTTAAA-CTTAA
126 CTCAACTCACCTCTCGCAATATGAGTT-GATTTTTTTGAAAAGCATAA
** * * *
84093564 TTTGAAAAGCCA-ATTTTGAAAGTACCTCGACATGTGACCC-GAGGCTCAACTTACCTCTCGCAA
1 TTTGAAAAG-CAGAAATTGAAAATACCTC-A-ACGTG-CCCTGAGGCTCAACTCACCTCTCGCAA
* * * *
84093627 TATAAGTTGATTTTTGAAAAATATAAATTGAAAAAACAGAAATTTG-AAATACCTCAACGTGCCC
62 TATGAGTTGATTTTT-AAAAACA-GAATT---AAAACAGAAA-TTGAAAATACCTCAACGTGTCC
* *
84093691 TGAGGCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGGAAAGCATAA
121 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAA
* * * * * * * *
84093741 ATTGAAAAACGGAAATTGGAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCACAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
84093806 AGTTGATTTTTTTGAAAAGCAGGAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAG
66 AGTTGA--TTTTT-AAAAACA-GAATT--AAAACAGAAATTGAAAATACCTCAACGTGTCCTGAG
* *
84093871 GCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAAAGCAGAA
125 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAA
84093919 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
84093984 AGTTGATTTTT------TG---CAAAA-AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAA
66 AGTTGATTTTTAAAAACAGAATTAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAA
84094039 CTCACCTCTCGCAATATGAGTTGATTTTTTT
131 CTCACCTCTCGCAATATGAGTTGATTTTTTT
84094070 TTTGAAAACA
Statistics
Matches: 425, Mismatches: 59, Indels: 55
0.79 0.11 0.10
Matches are distributed among these distances:
162 66 0.16
163 4 0.01
168 1 0.00
172 3 0.01
173 17 0.04
174 5 0.01
175 68 0.16
176 76 0.18
177 41 0.10
178 90 0.21
179 33 0.08
181 18 0.04
182 3 0.01
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (172 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTAAAAACAGAATTAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAA
Found at i:84094015 original size:73 final size:73
Alignment explanation
Indices: 84093929--84094068 Score: 271
Period size: 73 Copynumber: 1.9 Consensus size: 73
84093919 TTTGAAAAGC
84093929 AGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
84093994 TTGCAAAA
66 TTGCAAAA
*
84094002 AGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
84094067 TT
66 TT
84094069 TTTTGAAAAC
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.29
Consensus pattern (73 bp):
AGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGCAAAA
Found at i:84105599 original size:20 final size:21
Alignment explanation
Indices: 84105564--84105603 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
84105554 CACCTAATGA
84105564 ATTTATTTCTTAAACAAAAAG
1 ATTTATTTCTTAAACAAAAAG
*
84105585 ATTTA-TTCTTGAACAAAAA
1 ATTTATTTCTTAAACAAAAA
84105604 TGAAGGCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (21 bp):
ATTTATTTCTTAAACAAAAAG
Found at i:84106644 original size:10 final size:10
Alignment explanation
Indices: 84106629--84106653 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84106619 CATTAAAAAA
84106629 ATATATACAT
1 ATATATACAT
84106639 ATATATACAT
1 ATATATACAT
84106649 ATATA
1 ATATA
84106654 ATAAACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATACAT
Found at i:84106662 original size:23 final size:23
Alignment explanation
Indices: 84106635--84106680 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
84106625 AAAAATATAT
84106635 ACATATA-T-ATACATATATAATAA
1 ACATATACTAATA-ATA-ATAATAA
84106658 ACATATACTAATAATAATAATAA
1 ACATATACTAATAATAATAATAA
84106681 TAATAAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 4 0.19
25 3 0.14
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (23 bp):
ACATATACTAATAATAATAATAA
Found at i:84107412 original size:17 final size:17
Alignment explanation
Indices: 84107371--84107412 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
84107361 ATAACATTAA
*
84107371 AAATATATATAATATAT
1 AAATATATACAATATAT
*
84107388 AAACATATACAATATAT
1 AAATATATACAATATAT
*
84107405 ACATATAT
1 AAATATAT
84107413 TGGAGATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATATACAATATAT
Found at i:84107607 original size:20 final size:19
Alignment explanation
Indices: 84107582--84107628 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
84107572 AGAAAACGAG
84107582 ACAAAAAA-AAACTAAGTATA
1 ACAAAAAATAAACTAA-TA-A
*
84107602 ACAAAATAATAAAGTAATAA
1 ACAAAA-AATAAACTAATAA
84107622 ACAAAAA
1 ACAAAAA
84107629 GGACTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 13 0.54
21 4 0.17
22 6 0.25
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.15
Consensus pattern (19 bp):
ACAAAAAATAAACTAATAA
Found at i:84111343 original size:24 final size:24
Alignment explanation
Indices: 84111316--84111363 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
84111306 TACTATTAGA
84111316 ATGAATTTGATTGATTTACGATTT
1 ATGAATTTGATTGATTTACGATTT
* *
84111340 ATGAATTTGGTTGATTTATGATTT
1 ATGAATTTGATTGATTTACGATTT
84111364 CTATTGATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.52
Consensus pattern (24 bp):
ATGAATTTGATTGATTTACGATTT
Found at i:84122534 original size:11 final size:11
Alignment explanation
Indices: 84122518--84122543 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
84122508 CATAGGAGAC
84122518 AAAGGGATAGA
1 AAAGGGATAGA
84122529 AAAGGGATAGA
1 AAAGGGATAGA
84122540 AAAG
1 AAAG
84122544 TCAATGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.35, T:0.08
Consensus pattern (11 bp):
AAAGGGATAGA
Found at i:84129898 original size:22 final size:22
Alignment explanation
Indices: 84129873--84129933 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 22
84129863 CCTGAGTTGA
*
84129873 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATCGAGC
84129895 TGAA-A-T--G-T-TATCGAGC
1 TGAACAGTAAGCTCTATCGAGC
84129911 TGAACAGTAAGCTC-ATACGAGC
1 TGAACAGTAAGCTCTAT-CGAGC
84129933 T
1 T
84129934 AAAATGGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 14
0.67 0.02 0.30
Matches are distributed among these distances:
16 11 0.35
17 2 0.06
18 2 0.06
20 2 0.06
21 4 0.13
22 10 0.32
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATCGAGC
Found at i:84129967 original size:24 final size:24
Alignment explanation
Indices: 84129916--84130006 Score: 73
Period size: 24 Copynumber: 3.8 Consensus size: 24
84129906 CGAGCTGAAC
84129916 AGTAAGCT-CATACGAGCTAAAAT
1 AGTAAGCTCCATACGAGCTAAAAT
* *
84129939 GGTAAGCTCCA-ATGAGCTGAAAAT
1 AGTAAGCTCCATACGAGCT-AAAAT
* * *
84129963 AGTAAGCT-CTTACAAGCTGATATATT
1 AGTAAGCTCCATACGAGCT-A-A-AAT
84129989 AGTAAGCT-CATACGAGCT
1 AGTAAGCTCCATACGAGCT
84130007 GTGGTGAGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
23 14 0.26
24 21 0.39
25 1 0.02
26 18 0.33
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (24 bp):
AGTAAGCTCCATACGAGCTAAAAT
Found at i:84134218 original size:44 final size:44
Alignment explanation
Indices: 84134168--84134416 Score: 241
Period size: 44 Copynumber: 5.7 Consensus size: 44
84134158 CTATTATAGT
*
84134168 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGA-TGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAG-AAGATTGAAGCTAC
** * * * *
84134212 AAATCTTATCTCTTTGAAGTTGTAGTGGAGCAGATTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* ** * * * * *
84134256 CAATCTTATCTCTTTGACGTTGTAGTGGAGCAGATTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* *
84134300 AAATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAGCAAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
* * * *
84134344 AAGTCTTATTTCCCTAAAGTTGCAGTGG-GAAAATATGAGGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGAT-TGAAGCTAC
* * * *
84134388 AACTCCTATATCCCTAAAATTGCAGTGGA
1 AAATCTTATCTCCCTAAAGTTGCAGTGGA
84134417 TTGGATTGGA
Statistics
Matches: 176, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
43 7 0.04
44 169 0.96
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGAAGATTGAAGCTAC
Found at i:84136005 original size:4 final size:4
Alignment explanation
Indices: 84135996--84136038 Score: 61
Period size: 4 Copynumber: 11.0 Consensus size: 4
84135986 TTTTATGAAT
* *
84135996 TTTA TTTA TTTA TTTA TTTA TCTA TTTA TTTA -TTA TTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
84136039 CCTCTATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (4 bp):
TTTA
Found at i:84138051 original size:19 final size:18
Alignment explanation
Indices: 84138000--84138075 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
84137990 AGAATTACAA
*
84138000 AAAAATAATATAAAATTAT
1 AAAAATAAT-TAAAAATAT
* *
84138019 GAACAAT-ATAAAAAATAT
1 -AAAAATAATTAAAAATAT
* *
84138037 AAAAAATATTTAAAAGCTAT
1 -AAAAATAATTAAAA-ATAT
84138057 AAAAATAATTACAAAATAT
1 AAAAATAATTA-AAAATAT
84138076 TACTCAAAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
18 12 0.28
19 20 0.47
20 11 0.26
ACGTcount: A:0.66, C:0.04, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATAATTAAAAATAT
Found at i:84162267 original size:20 final size:20
Alignment explanation
Indices: 84162242--84162288 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
84162232 GATTTGATAT
84162242 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
84162262 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
84162282 ACATGAT
1 ACATGAT
84162289 GTATTCATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84162427 original size:24 final size:24
Alignment explanation
Indices: 84162336--84162443 Score: 137
Period size: 25 Copynumber: 4.4 Consensus size: 24
84162326 AGGAAGTGCA
* *
84162336 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
84162360 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
84162386 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
84162411 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
84162434 AAAAGAGGCT
1 AAAAG-GGCT
84162444 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 40 0.53
26 13 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:84170290 original size:25 final size:25
Alignment explanation
Indices: 84170261--84170308 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84170251 TTATATTATG
* * *
84170261 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
84170286 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
84170309 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:84170369 original size:20 final size:20
Alignment explanation
Indices: 84170344--84170390 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
84170334 GATTTGATAT
84170344 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
84170364 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
84170384 ACATGAT
1 ACATGAT
84170391 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84170529 original size:24 final size:24
Alignment explanation
Indices: 84170438--84170545 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
84170428 AGGAAGTGCA
* *
84170438 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
84170462 GAAAAAGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
84170488 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
84170513 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
84170536 AAAAGAGGCT
1 AAAAG-GGCT
84170546 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 38 0.51
26 13 0.18
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:84170556 original size:49 final size:50
Alignment explanation
Indices: 84170438--84170557 Score: 156
Period size: 49 Copynumber: 2.4 Consensus size: 50
84170428 AGGAAGTGCA
84170438 AAAAGGGCTATGCCCCAGTTTACCGAAAAAGGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAAGGCTTTTGCCCCAGTTTATT
* * *
84170488 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGC-TATGCCCCAGTTTACCGAAAAAGGCTTTTGCCCCAGTTTATT
*
84170536 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
84170558 ATATGATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
48 14 0.23
49 19 0.31
50 15 0.24
51 14 0.23
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAAGGCTTTTGCCCCAGTTTATT
Found at i:84170789 original size:31 final size:31
Alignment explanation
Indices: 84170754--84170817 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
84170744 TGTTTACAGT
*
84170754 AAAGGCTTCGGCCCAGTCATATGAAATATGA
1 AAAGGCTTCGACCCAGTCATATGAAATATGA
**
84170785 AAAGGCTTCGACCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTCATATGAAATATGA
84170816 AA
1 AA
84170818 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTCATATGAAATATGA
Found at i:84179980 original size:28 final size:28
Alignment explanation
Indices: 84179948--84180038 Score: 96
Period size: 28 Copynumber: 3.2 Consensus size: 28
84179938 AGTTAAAAAA
84179948 AGCCTTTATGGTGAACTTTGAAAAGAAT
1 AGCCTTTATGGTGAACTTTGAAAAGAAT
* * *
84179976 AGCCTTTATGGCGAACTTTGAATAGTAT
1 AGCCTTTATGGTGAACTTTGAAAAGAAT
* * *
84180004 AACCTGTATGGCT-AACTCTGAAAAGGAAT
1 AGCCTTTATGG-TGAACTTTGAAAA-GAAT
84180033 -GCCTTT
1 AGCCTTT
84180039 GTGGCAAACT
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 47 0.94
29 3 0.06
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (28 bp):
AGCCTTTATGGTGAACTTTGAAAAGAAT
Found at i:84182130 original size:21 final size:20
Alignment explanation
Indices: 84182091--84182131 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
84182081 ATCTCTTTCA
*
84182091 TATTAAATTAATATAATATT
1 TATTAAATAAATATAATATT
*
84182111 TATTAAGATAAATATTATATT
1 TATTAA-ATAAATATAATATT
84182132 AAATTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TATTAAATAAATATAATATT
Found at i:84182141 original size:17 final size:17
Alignment explanation
Indices: 84182090--84182144 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
84182080 AATCTCTTTC
* *
84182090 ATATTAAATT-AATATA
1 ATATTATATTAAATTTA
*
84182106 ATATT-TATTAAGA-TAA
1 ATATTATATTAA-ATTTA
84182122 ATATTATATTAAATTTA
1 ATATTATATTAAATTTA
84182139 ATATTA
1 ATATTA
84182145 AATCTTATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 3 0.10
16 13 0.42
17 15 0.48
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
ATATTATATTAAATTTA
Found at i:84182200 original size:62 final size:59
Alignment explanation
Indices: 84182091--84182207 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
84182081 ATCTCTTTCA
* * * * *
84182091 TATTAAATTAATATAATATTTATTAAGATAAATATTATATTAAATTTAATATTAAATCT
1 TATTAAAATAACATAATATTTATTAAGATAAACAGTAAATTAAATTTAATATTAAATCT
84182150 TATTAAAATAACATAATATTTATCTACAAGATAAACAGTAAATTAAATTTAATATTAA
1 TATTAAAATAACATAATATTTAT-T--AAGATAAACAGTAAATTAAATTTAATATTAA
84182208 GATAATCGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 21 0.42
60 1 0.02
62 28 0.56
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (59 bp):
TATTAAAATAACATAATATTTATTAAGATAAACAGTAAATTAAATTTAATATTAAATCT
Found at i:84183698 original size:21 final size:19
Alignment explanation
Indices: 84183664--84183725 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
84183654 TAAGTTATGT
84183664 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
84183686 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
84183708 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
84183726 GTATCTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:84183849 original size:18 final size:18
Alignment explanation
Indices: 84183826--84183866 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
84183816 GAATATTGAA
84183826 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
84183844 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
84183862 AAATA
1 TAATA
84183867 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:84184243 original size:14 final size:14
Alignment explanation
Indices: 84184213--84184287 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
84184203 ACAATTTTAA
84184213 AAAATATAT-AAA-
1 AAAATATATAAAAT
*
84184225 GAAATATATAAAAT
1 AAAATATATAAAAT
*
84184239 AAAATATATAATAT
1 AAAATATATAAAAT
* * *
84184253 AATATAATTTATAGAT
1 AAAAT-ATATA-AAAT
*
84184269 AAAATATATGATAAT
1 AAAATATAT-AAAAT
84184284 AAAA
1 AAAA
84184288 AAATAATGGA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
12 8 0.17
13 3 0.06
14 16 0.33
15 13 0.27
16 8 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (14 bp):
AAAATATATAAAAT
Found at i:84184290 original size:18 final size:18
Alignment explanation
Indices: 84184269--84184303 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
84184259 ATTTATAGAT
84184269 AAAATATAT-GATAATAAA
1 AAAATA-ATGGATAATAAA
84184287 AAAATAATGGATAATAA
1 AAAATAATGGATAATAA
84184304 TAGTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.26
Consensus pattern (18 bp):
AAAATAATGGATAATAAA
Found at i:84192161 original size:49 final size:49
Alignment explanation
Indices: 84192089--84192186 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
84192079 TTCGAAGGTG
*
84192089 GGGAGTTTCGATTCTTTCAATTGTCACCTAACAACAAAGATTTTGCAAA
1 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
84192138 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
1 GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
84192187 ATCAAACTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (49 bp):
GGGAGTTTCGATTCTCTCAATTGTCACCTAACAACAAAGATTTTGCAAA
Found at i:84193517 original size:24 final size:24
Alignment explanation
Indices: 84193487--84193535 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
84193477 GAACATGCCT
84193487 TTGAGTCTGTCTTGAAATAGTTTC
1 TTGAGTCTGTCTTGAAATAGTTTC
84193511 TTGAGTCTGTCTTGAAATAGTTTC
1 TTGAGTCTGTCTTGAAATAGTTTC
84193535 T
1 T
84193536 ACCTTATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.20, T:0.47
Consensus pattern (24 bp):
TTGAGTCTGTCTTGAAATAGTTTC
Found at i:84195721 original size:22 final size:22
Alignment explanation
Indices: 84195684--84195728 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
84195674 TTGATGTTCT
84195684 AGTTGGAATGGTAATGTGTCTAA
1 AGTTGGAATGGTAATGTGT-TAA
*
84195707 AGTTGGTAT-GTAATGTGTTAA
1 AGTTGGAATGGTAATGTGTTAA
84195728 A
1 A
84195729 CTTAATGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 9 0.43
23 8 0.38
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (22 bp):
AGTTGGAATGGTAATGTGTTAA
Found at i:84196136 original size:300 final size:300
Alignment explanation
Indices: 84195594--84196197 Score: 1163
Period size: 300 Copynumber: 2.0 Consensus size: 300
84195584 AACTCATACT
84195594 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
1 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
* *
84195659 TTTGAGTTGACGAAGTTGATGTTCTAGTTGGAATGGTAATGTGTCTAAAGTTGGTATGTAATGTG
66 TTTGAGTTGACGAAGTTGATGTTCTAATTGGAATGGTAATATGTCTAAAGTTGGTATGTAATGTG
84195724 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
131 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
84195789 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
196 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
84195854 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
261 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
84195894 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
1 ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
*
84195959 TTTGAGTTGACGAAGTTGATGTTCTAATTGGAATTGTAATATGTCTAAAGTTGGTATGTAATGTG
66 TTTGAGTTGACGAAGTTGATGTTCTAATTGGAATGGTAATATGTCTAAAGTTGGTATGTAATGTG
*
84196024 TTAAACTTAATGTTTTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
131 TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
84196089 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
196 GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
*
84196154 TAGATTGGATGTGATGGTGCCTTATGGCATATCGGTTAGA
261 TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
84196194 ACTA
1 ACTA
84196198 GGGACTTGTG
Statistics
Matches: 299, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
300 299 1.00
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (300 bp):
ACTAAGCTTTTGTCTCGGTAGATTTTGACTCGTTATGTTGATTTTGTGGCATGTATATAAGGCAT
TTTGAGTTGACGAAGTTGATGTTCTAATTGGAATGGTAATATGTCTAAAGTTGGTATGTAATGTG
TTAAACTTAATGTTCTCATGGTATGCTTATATGTTATTTTGGAAATGTCATGTGATCTAAATTAT
GATATTGATGAAATTGGAATGTAATGTTTGGTTTATGCTTTAGTTAATGATGTGAATTGTTGAAT
TAGATTGGATATGATGGTGCCTTATGGCATATCGGTTAGA
Found at i:84196869 original size:19 final size:20
Alignment explanation
Indices: 84196828--84196870 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
84196818 TACTTTAATG
* *
84196828 TAAATATTAAAAAATAGAGA
1 TAAATATTAAAAAATACACA
*
84196848 TAAATATT-AAAACTACACA
1 TAAATATTAAAAAATACACA
84196867 TAAA
1 TAAA
84196871 ATTTGTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.63, C:0.07, G:0.05, T:0.26
Consensus pattern (20 bp):
TAAATATTAAAAAATACACA
Found at i:84199550 original size:14 final size:15
Alignment explanation
Indices: 84199516--84199550 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
84199506 ATGGAGGTAG
84199516 GATTCTGTATATTCT
1 GATTCTGTATATTCT
84199531 GA-TCTGTATA-TCT
1 GATTCTGTATATTCT
84199544 GATTCTG
1 GATTCTG
84199551 ATGACTGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 12 0.63
15 2 0.11
ACGTcount: A:0.20, C:0.14, G:0.17, T:0.49
Consensus pattern (15 bp):
GATTCTGTATATTCT
Found at i:84206108 original size:17 final size:18
Alignment explanation
Indices: 84206083--84206122 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
84206073 AGACCAATTT
84206083 GGGCATGTAGG-CCACAC
1 GGGCATGTAGGCCCACAC
*
84206100 GGGCTTGTAGGCCCACAC
1 GGGCATGTAGGCCCACAC
*
84206118 AGGCA
1 GGGCA
84206123 AGCCACCCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.23, C:0.30, G:0.35, T:0.12
Consensus pattern (18 bp):
GGGCATGTAGGCCCACAC
Found at i:84207497 original size:16 final size:15
Alignment explanation
Indices: 84207470--84207512 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
84207460 AATTTAATTC
*
84207470 TTTTTCTTTTAACTT
1 TTTTTTTTTTAACTT
84207485 TTCTTTTTTTTAACTT
1 TT-TTTTTTTTAACTT
84207501 TTTTTTTCTTTA
1 TTTTTTT-TTTA
84207513 GATTTCTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTTAACTT
Found at i:84212727 original size:4 final size:4
Alignment explanation
Indices: 84212710--84212739 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
84212700 TATTGTTTTC
*
84212710 AATT AATA AATT AATT AATT AATT AATT AA
1 AATT AATT AATT AATT AATT AATT AATT AA
84212740 AACTAAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (4 bp):
AATT
Found at i:84216867 original size:26 final size:26
Alignment explanation
Indices: 84216831--84216882 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
84216821 AATTATGGTG
84216831 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
84216857 TTAAATTCTTATGTGTCACCCATGTC
1 TTAAATTCTTATGTGTCACCCATGTC
84216883 AATTTAGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (26 bp):
TTAAATTCTTATGTGTCACCCATGTC
Found at i:84217048 original size:14 final size:14
Alignment explanation
Indices: 84217029--84217058 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84217019 ATCTCTCTAC
84217029 TTATTTTATTCTTT
1 TTATTTTATTCTTT
84217043 TTATTTTATTCTTT
1 TTATTTTATTCTTT
84217057 TT
1 TT
84217059 TATCTCTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (14 bp):
TTATTTTATTCTTT
Found at i:84220662 original size:3 final size:3
Alignment explanation
Indices: 84220654--84220700 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
84220644 TTTCATTCTG
84220654 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
84220701 TCTGCATTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:84222919 original size:131 final size:131
Alignment explanation
Indices: 84222692--84223052 Score: 309
Period size: 131 Copynumber: 2.7 Consensus size: 131
84222682 GGGATCTTCA
* * * * * * *
84222692 ATTATTTTGAGCAAATGAAAAAGCACAACCCAGCACGATAGGGC-TCGATTCTCAAATCGCCAAA
1 ATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCAT-GATTCCCGAATTGCCAAA
* * *
84222756 CATCGAACATCACCTTCGTTTTTCAAGGTTTTTA-ATAAGCATGAATGAAAATCTAAAGGAATAT
65 CACCGAACATCACCTTCGTTTTTAAAGATTTTTAGA-AAGCATGAATGAAAATCTAAAGGAATAT
84222820 TCG
129 TCG
* *
84222823 ATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAAC
1 ATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATTGCCAAAC
* * ** * * ** * * * *
84222888 GCCGAATATTGCCTTCG-TTTTAAATGATTTTTAGAAGGTATGCGTGAAATTTTGAAGGGATATT
66 ACCGAACATCACCTTCGTTTTTAAA-GATTTTTAGAAAGCATGAATGAAAATCTAAAGGAATATT
*
84222952 TG
130 CG
*** * * *
84222954 ATTATTTT-AAGCAAACGAGAAATTGTAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAA
1 ATTATTTTGAA-CAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCC-CGAATTGCCAA
* * * * *
84223018 ATATCGCACATCGCCTTC-ATTTTAAAGAATTTTTA
64 ACACCGAACATCACCTTCGTTTTTAAAG-ATTTTTA
84223053 AATGATTGAT
Statistics
Matches: 184, Mismatches: 39, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
130 8 0.04
131 138 0.75
132 38 0.21
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (131 bp):
ATTATTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCCCGAATTGCCAAAC
ACCGAACATCACCTTCGTTTTTAAAGATTTTTAGAAAGCATGAATGAAAATCTAAAGGAATATTC
G
Found at i:84225285 original size:2 final size:2
Alignment explanation
Indices: 84225278--84225312 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
84225268 TGATTATAGA
84225278 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
84225313 GAAGAAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
GT
Found at i:84237412 original size:37 final size:36
Alignment explanation
Indices: 84237365--84237434 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
84237355 CACTTTAATA
*
84237365 TTAAATTAATA-AAATACTATTAACATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
84237402 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATAAAACTATTAAAATAATATTA
84237435 TTTTTGGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:84239927 original size:68 final size:66
Alignment explanation
Indices: 84239855--84240026 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
84239845 CATCATGTGT
* * * *
84239855 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
84239918 TGTAG
62 TGTAG
** * *
84239923 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
84239988 AG
65 AG
* * * *
84239990 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
84240027 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:84239960 original size:64 final size:64
Alignment explanation
Indices: 84239879--84240062 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
84239869 AGACATTATG
* * *
84239879 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
84239943 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
84240008 AA
63 AA
* * *
84240010 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
84240063 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:84258172 original size:47 final size:47
Alignment explanation
Indices: 84258050--84258250 Score: 384
Period size: 47 Copynumber: 4.2 Consensus size: 47
84258040 CAGCCAAGAC
84258050 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84258097 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84258146 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84258193 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84258240 AGTGTATATAT
1 AGTGTATATAT
84258251 ATGTGATATG
Statistics
Matches: 152, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
47 105 0.69
49 47 0.31
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:84258287 original size:32 final size:33
Alignment explanation
Indices: 84258224--84258290 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 33
84258214 CTAATGGCCG
84258224 ATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGAT
84258258 ATGTGATGAATGTGAAAGTG-TATATATGTGAT
1 ATGTGATGAATGTGAAAGTGATATATATGTGAT
84258290 A
1 A
84258291 AGGCCTAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.39
34 20 0.61
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.37
Consensus pattern (33 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGAT
Found at i:84258311 original size:47 final size:47
Alignment explanation
Indices: 84258258--84258674 Score: 681
Period size: 47 Copynumber: 8.7 Consensus size: 47
84258248 TATATGTGAT
*
84258258 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
84258305 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
84258352 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
84258399 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
84258448 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
84258495 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
84258544 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
84258591 ATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * *
84258640 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
84258675 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 14, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 217 0.62
49 133 0.38
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:84258452 original size:143 final size:141
Alignment explanation
Indices: 84258258--84258674 Score: 681
Period size: 143 Copynumber: 2.9 Consensus size: 141
84258248 TATATGTGAT
*
84258258 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
84258323 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
84258388 CCTAATGGCCG
131 CCTAATGGCCG
*
84258399 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
84258464 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
84258529 AAGGCCTAATGGCCG
127 AAGGCCTAATGGCCG
84258544 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * * * *
84258609 TGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
66 TG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
84258674 G
129 G
84258675 TCCCGAAGGG
Statistics
Matches: 258, Mismatches: 12, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
141 20 0.08
143 151 0.59
145 87 0.34
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCCG
Found at i:84258453 original size:96 final size:96
Alignment explanation
Indices: 84258258--84258674 Score: 721
Period size: 96 Copynumber: 4.4 Consensus size: 96
84258248 TATATGTGAT
*
84258258 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
84258323 TG--TATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCA
84258352 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
84258417 TGTATATATATGTGATAAGGCCTAATGGCCA
66 TGTATATATATGTGATAAGGCCTAATGGCCA
84258448 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
84258513 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCA
84258544 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
84258609 TGTATATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATATGTGATAAGGCCTAATGGCCA
* * * *
84258640 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
84258675 TCCCGAAGGG
Statistics
Matches: 309, Mismatches: 12, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
94 66 0.21
96 243 0.79
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCA
Found at i:84258849 original size:37 final size:37
Alignment explanation
Indices: 84258793--84258871 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
84258783 CCGAGCTCTA
* *
84258793 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
84258830 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
84258867 AAGAC
1 AAGAC
84258872 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:84261469 original size:27 final size:29
Alignment explanation
Indices: 84261426--84261480 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 29
84261416 CAAATCCTCC
*
84261426 AATTCGTCATGATTTCTTTGGCAGTACAA
1 AATTCGTCATGATTTCTTTGGCAATACAA
*
84261455 AATTC-TCATG-TTTCTTTTGCAATACA
1 AATTCGTCATGATTTCTTTGGCAATACA
84261481 TTACTCATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 14 0.58
28 5 0.21
29 5 0.21
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (29 bp):
AATTCGTCATGATTTCTTTGGCAATACAA
Found at i:84267183 original size:47 final size:47
Alignment explanation
Indices: 84267125--84267466 Score: 551
Period size: 47 Copynumber: 7.3 Consensus size: 47
84267115 ACAAGATATG
84267125 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
84267172 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
84267219 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
84267266 TATATGTGACT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGA-TAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
84267313 TATATGTGATAAGGACGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
84267360 TATATGTGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
84267407 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
84267454 TAAATGTGATAAG
1 TATATGTGATAAG
84267467 TCCCGAAGGG
Statistics
Matches: 271, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 269 0.99
48 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:84267225 original size:25 final size:25
Alignment explanation
Indices: 84267197--84267274 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
84267187 CTAATGGCCA
84267197 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
84267222 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
84267244 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
84267269 ATGTGA
1 ATGTGA
84267275 CTAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:84269462 original size:38 final size:38
Alignment explanation
Indices: 84269417--84269529 Score: 154
Period size: 38 Copynumber: 3.0 Consensus size: 38
84269407 AATCCGGGCT
* * *
84269417 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATATGCAGAGATTATGTCCGGG
* *
84269455 TAAAGACCCGATGACTATATGCGGAGATTATGCCCGGG
1 TAAAGACCCGATGACTATATGCAGAGATTATGTCCGGG
* * *
84269493 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGCAGAGATTATGTCCGG
84269530 ATTAAAATTC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGCAGAGATTATGTCCGGG
Found at i:84269868 original size:25 final size:25
Alignment explanation
Indices: 84269827--84269880 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
84269817 GTGTAATAAT
*
84269827 GAATGAATATAGGCACTATGTGTGC
1 GAATGAATATAGACACTATGTGTGC
*
84269852 GAATGAAT-TGAGACACTGTGTGTGC
1 GAATGAATAT-AGACACTATGTGTGC
84269877 GAAT
1 GAAT
84269881 TCTTTAACCG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (25 bp):
GAATGAATATAGACACTATGTGTGC
Found at i:84269904 original size:28 final size:28
Alignment explanation
Indices: 84269865--84269962 Score: 101
Period size: 28 Copynumber: 3.5 Consensus size: 28
84269855 TGAATTGAGA
*
84269865 CACTGTGTGTGCGAATTCTTTAACCGAG
1 CACTATGTGTGCGAATTCTTTAACCGAG
** * **
84269893 CACTATGTGTGCGAGA-TCGGTCAGTG-G
1 CACTATGTGTGCGA-ATTCTTTAACCGAG
*
84269920 ACACTGTGTGTGCGAATTCTTTAACCGAG
1 -CACTATGTGTGCGAATTCTTTAACCGAG
84269949 CACTATGTGTGCGA
1 CACTATGTGTGCGA
84269963 GATCGGTCAG
Statistics
Matches: 53, Mismatches: 13, Indels: 8
0.72 0.18 0.11
Matches are distributed among these distances:
27 2 0.04
28 49 0.92
29 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (28 bp):
CACTATGTGTGCGAATTCTTTAACCGAG
Found at i:84269933 original size:56 final size:56
Alignment explanation
Indices: 84269863--84269989 Score: 245
Period size: 56 Copynumber: 2.3 Consensus size: 56
84269853 AATGAATTGA
84269863 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
84269919 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
1 GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
*
84269975 GGCACTGTGTGTGCG
1 GACACTGTGTGTGCG
84269990 GATTTCGTTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (56 bp):
GACACTGTGTGTGCGAATTCTTTAACCGAGCACTATGTGTGCGAGATCGGTCAGTG
Found at i:84269979 original size:28 final size:28
Alignment explanation
Indices: 84269892--84269989 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
84269882 CTTTAACCGA
84269892 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
* * ** * ** *
84269920 ACACTGTGTGTGCGA-ATTCTTTAACCGA
1 GCACTATGTGTGCGAGA-TCGGTCAGTGG
84269948 GCACTATGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAGATCGGTCAGTGG
*
84269976 GCACTGTGTGTGCG
1 GCACTATGTGTGCG
84269990 GATTTCGTTT
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
27 1 0.02
28 49 0.96
29 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGTCAGTGG
Found at i:84273103 original size:47 final size:47
Alignment explanation
Indices: 84273045--84273386 Score: 558
Period size: 47 Copynumber: 7.3 Consensus size: 47
84273035 ACAAGATATG
84273045 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
84273092 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
84273139 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
84273186 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
84273233 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
84273280 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
84273327 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
84273374 TAAATGTGATAAG
1 TATATGTGATAAG
84273387 TCCCGAAGGG
Statistics
Matches: 271, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 271 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:84273145 original size:25 final size:25
Alignment explanation
Indices: 84273117--84273194 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
84273107 CTAATGGCCA
84273117 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
84273142 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
84273164 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
84273189 ATGTGA
1 ATGTGA
84273195 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:84277789 original size:3 final size:3
Alignment explanation
Indices: 84277781--84277810 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
84277771 TGTTTTTCTT
84277781 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
84277811 GTATAGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:84279626 original size:46 final size:46
Alignment explanation
Indices: 84279482--84279690 Score: 171
Period size: 46 Copynumber: 4.5 Consensus size: 46
84279472 TTTGTGCGCT
* * *
84279482 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-T-ATTACGAGAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGG-CATTGA-GATGAGAGCC
* * * *
84279528 AGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGAGACAT-GCATCGGCATTGAGATGAGAGCC
* * *
84279576 AGTGTAAGAGATGTTTGAGACATGCATCGGCATTGAGGTGTA-AGCC
1 AGTGTAAGACATGTCTGAGACATGCATCGGCATTGAGATG-AGAGCC
* * *
84279622 AGTGTAAGACATGTCT-AGGACATGCATCGGC-TACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGA-GACATGCATCGGCAT-TGAGATGAGAGCC
*
84279666 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGAGACATG
84279691 GCGTCGGCCT
Statistics
Matches: 134, Mismatches: 19, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 57 0.43
47 27 0.20
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCATTGAGATGAGAGCC
Found at i:84287295 original size:46 final size:47
Alignment explanation
Indices: 84287212--84287429 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 47
84287202 TTTGTGCGCT
** *
84287212 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTCGAGATGTAAGCC
*
84287258 AGTGTAAGA-CATGTCTGGGACATGG-ATCAGCTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCT-CGAGATGTAAGCC
* * * *
84287302 AATGTAAGACCATGTCTGGGACATGGCATC-GCCATGGAGATTTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-C-TCGAGATGT-A-AGCC
* * *
84287352 AGTGTAAGACCATTTCTGGGACATGGCATCAACTTGATGAATG--AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTCGA-G-ATGTAAGCC
* *
84287399 AGTGTAAGACCATGTCTGGGACGTCGCATCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCA
84287430 TCATTACACC
Statistics
Matches: 141, Mismatches: 18, Indels: 25
0.77 0.10 0.14
Matches are distributed among these distances:
44 10 0.07
45 19 0.13
46 43 0.30
47 33 0.23
49 3 0.02
50 31 0.22
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTCGAGATGTAAGCC
Found at i:84287417 original size:47 final size:47
Alignment explanation
Indices: 84287212--84287429 Score: 157
Period size: 47 Copynumber: 4.7 Consensus size: 47
84287202 TTTGTGCGCT
*** * *
84287212 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCAACTTGAGA-GATGAGCC
* * *
84287258 AGTGTAAGA-CATGTCTGGGACATGG-ATCAGC-T-ACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGA-GAGATGAGCC
* ** * *
84287302 AATGTAAGACCATGTCTGGGACATGGCATCGCCATG-GAGATTTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGAGA--T--GAGCC
*
84287352 AGTGTAAGACCATTTCTGGGACATGGCATCAACTTGATGA-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGA-GAGATGAGCC
* *
84287399 AGTGTAAGACCATGTCTGGGACGTCGCATCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCA
84287430 TCATTACACC
Statistics
Matches: 137, Mismatches: 22, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
43 2 0.01
44 13 0.09
45 18 0.13
46 32 0.23
47 34 0.25
48 1 0.01
49 1 0.01
50 33 0.24
51 1 0.01
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGAGAGATGAGCC
Found at i:84290818 original size:37 final size:37
Alignment explanation
Indices: 84290754--84290843 Score: 94
Period size: 37 Copynumber: 2.4 Consensus size: 37
84290744 GACCCACTAC
* * *
84290754 GTGGTGTGTAAGGTGGATGGGTCTATCATGGTCCTAT-
1 GTGGTGTGTAGGGTGCATGGCTCTATCATGG-CCTATA
*
84290791 GTGGTGTGTAGGGTGCATAGGCT-TATCATTGCCTATAA
1 GTGGTGTGTAGGGTGCAT-GGCTCTATCATGGCCTAT-A
*
84290829 GTGGTGTGCAGGGTG
1 GTGGTGTGTAGGGTG
84290844 GTCAGAGTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.11
37 23 0.51
38 17 0.38
ACGTcount: A:0.17, C:0.11, G:0.39, T:0.33
Consensus pattern (37 bp):
GTGGTGTGTAGGGTGCATGGCTCTATCATGGCCTATA
Found at i:84293491 original size:8 final size:8
Alignment explanation
Indices: 84293478--84293509 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
84293468 ATAGAAAAGA
84293478 TATATGTT
1 TATATGTT
84293486 TATATGTT
1 TATATGTT
84293494 TATATGTT
1 TATATGTT
84293502 TATATGTT
1 TATATGTT
84293510 CATGTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (8 bp):
TATATGTT
Found at i:84295208 original size:43 final size:42
Alignment explanation
Indices: 84295149--84295306 Score: 185
Period size: 42 Copynumber: 3.7 Consensus size: 42
84295139 ACACCACTGT
**
84295149 CATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACATGTAATCTCAAATCGATGC
* * * * * *
84295191 CAATAGCCCA-ACTATGGTCTTACACGAAATCTCACATCAATTC
1 C-ATATCCCAGA-TATGGTCTTACATGTAATCTCAAATCGATGC
* *
84295234 CATATCCCAGATATGGTCTTACATG-AAGTCTCAAATTGATGT
1 CATATCCCAGATATGGTCTTACATGTAA-TCTCAAATCGATGC
84295276 CATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCCCAGATATGGTCTTACATGTAATCT
84295307 TAGTAACCCT
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 59 0.61
43 36 0.37
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGTAATCTCAAATCGATGC
Found at i:84311456 original size:19 final size:20
Alignment explanation
Indices: 84311432--84311469 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84311422 GGTATCACCA
84311432 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
84311451 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
84311470 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:84311873 original size:46 final size:46
Alignment explanation
Indices: 84311708--84311883 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
84311698 TGTAACCCGC
* * * * *
84311708 CCATAAGTGAACTTGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
84311754 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * * *
84311804 --TTCA-CGAACTCAGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84311847 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84311884 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.58
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84315999 original size:8 final size:8
Alignment explanation
Indices: 84315986--84316010 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
84315976 AACAATAGGG
84315986 GTAAATAT
1 GTAAATAT
84315994 GTAAATAT
1 GTAAATAT
84316002 GTAAATAT
1 GTAAATAT
84316010 G
1 G
84316011 CTTAAATGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (8 bp):
GTAAATAT
Found at i:84321017 original size:20 final size:21
Alignment explanation
Indices: 84320978--84321017 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
84320968 AAGGGCTATT
*
84320978 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
84320999 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
84321018 TTGAAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:84321889 original size:49 final size:48
Alignment explanation
Indices: 84321678--84321994 Score: 217
Period size: 49 Copynumber: 6.7 Consensus size: 48
84321668 TGAAATGTGT
* * * * *
84321678 GCTAGTGTAAGACATGTCTGGGACA-AGCATCGGCC-ATATTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATAATGAGA
* ** * * *
84321724 GCCAGTGTAAGAAATATCTAGGACA-AGCATCGACCTCAAGAT-ATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT--AGATAATG-AGA
* * * *
84321772 GCTAGTGTAAGACCTGTCTGGGACATGGCATCG-GCTTGA-CATGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATAATGAGA
* * * *
84321817 TC-AGTATAAGACTTGTCTCGGACATGGCATCGACACT-GATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTAGATA-ATGAGA
* * * * *
84321865 GCTAGTGTAAGACCTGTCTGGGACATGACATTGGCCTCGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATA-ATGAGA
* *
84321914 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGAT-ATGTGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATAATGAGA
* * *
84321961 GCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCG
84321995 GCATCGTACC
Statistics
Matches: 213, Mismatches: 41, Indels: 32
0.74 0.14 0.11
Matches are distributed among these distances:
44 27 0.13
45 3 0.01
46 37 0.17
47 20 0.09
48 47 0.22
49 79 0.37
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAGATAATGAGA
Found at i:84321943 original size:98 final size:93
Alignment explanation
Indices: 84321771--84321996 Score: 242
Period size: 98 Copynumber: 2.4 Consensus size: 93
84321761 AAGATATGCA
* * * *
84321771 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGACATGTGTCAGTATAAGACTTGTCTC
1 AGCTAGTGTAAGACCTGTCTGGGACATGACATCGGCTCGACATGAGTCAGTATAAGACCTGTCTC
84321836 GGACATGGCATCGACACTGATAGATGAG
66 GGACATGGCATCGACACTGATAGATGAG
* * *
84321864 AGCTAGTGTAAGACCTGTCTGGGACATGACATTGGCCTCGATATATGAAAGTCAGTGTAAGACCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGACATCGG-CTCG--ACATG--AGTCAGTATAAGACCT
* * *
84321929 GTCTGGGACATGGCATCGAC-TTAGAT--ATGTG
61 GTCTCGGACATGGCATCGACACT-GATAGATGAG
* * * *
84321960 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGCTAGTGTAAGACC-TGTCTGGGACATGACATCGGC
84321997 ATCGTACCTT
Statistics
Matches: 111, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
93 33 0.30
94 3 0.03
96 23 0.21
97 17 0.15
98 35 0.32
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (93 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGACATCGGCTCGACATGAGTCAGTATAAGACCTGTCTC
GGACATGGCATCGACACTGATAGATGAG
Found at i:84325703 original size:80 final size:78
Alignment explanation
Indices: 84325619--84325790 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
84325609 GGACTAAGAT
*
84325619 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
84325682 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
84325699 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
84325764 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
84325778 CCGAAGGCATTTG
1 CCGAAGGCATTTG
84325791 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
79 38 0.47
80 37 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:84325781 original size:39 final size:39
Alignment explanation
Indices: 84325566--84325788 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
84325556 TTGAATGCTG
* * * * * *
84325566 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
84325606 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
84325646 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
84325686 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
84325726 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
84325765 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
84325789 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 37 0.24
40 105 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:84325808 original size:79 final size:80
Alignment explanation
Indices: 84325646--84325823 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
84325636 AGATACAAGT
* * * *
84325646 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
84325711 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
84325726 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
84325790 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
84325805 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
84325824 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:84333649 original size:39 final size:39
Alignment explanation
Indices: 84333479--84333702 Score: 222
Period size: 40 Copynumber: 5.7 Consensus size: 39
84333469 TTGAATGCTG
* * *
84333479 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
84333519 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAA-A
* * *
84333559 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* * *
84333599 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
84333638 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* *
84333677 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84333703 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 7 0.04
39 54 0.35
40 84 0.54
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:84333724 original size:78 final size:79
Alignment explanation
Indices: 84333559--84333735 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 79
84333549 AGATACAAGT
* * * *
84333559 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
84333624 GTGCGAGTATTAAA
66 GAACGAGGACTAAA
* * * *
84333638 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
84333702 GAACGAGGAGCTATA
66 GAACGAGGA-CTAAA
*
84333717 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
84333736 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
78 58 0.70
79 25 0.30
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGACTAAA
Found at i:84335473 original size:46 final size:46
Alignment explanation
Indices: 84335398--84335571 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
84335388 TGTAACCCGC
* * * * *
84335398 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
* * *
84335444 CCATGAGTGAACTCGGACTCAGCTCAACGAGTTCGGATACCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--A-C-ATTTACAT
* * *
84335494 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
84335537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
84335572 TATGCCCAAA
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 3 0.03
46 59 0.56
47 27 0.25
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACAT
Found at i:84335592 original size:46 final size:46
Alignment explanation
Indices: 84335401--84335592 Score: 142
Period size: 46 Copynumber: 4.2 Consensus size: 46
84335391 AACCCGCCCA
* * * * ***
84335401 TAAGCGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAAACATCC
* * *
84335446 ATGAGTGAACTCGGACTCAGCTCAACGAGTTCGGATACCTAGTTACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT-CCTA--AACATCC
* * * **
84335495 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAAACATCC
* *
84335539 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGTATGCCCAAACATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT-CCTAAACATCC
84335587 T-AGTGA
1 TAAGTGA
84335593 CATGTCACTT
Statistics
Matches: 116, Mismatches: 21, Indels: 18
0.75 0.14 0.12
Matches are distributed among these distances:
43 4 0.03
44 1 0.01
45 4 0.03
46 62 0.53
47 29 0.25
48 11 0.09
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTAAACATCC
Found at i:84337972 original size:15 final size:15
Alignment explanation
Indices: 84337952--84337993 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
84337942 TAACAAGAAA
84337952 AGAATAAAGAAATCC
1 AGAATAAAGAAATCC
*
84337967 AGAATAAAGAGATCC
1 AGAATAAAGAAATCC
*
84337982 AGGATAAAGAAA
1 AGAATAAAGAAA
84337994 CCCAAGATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.19, T:0.12
Consensus pattern (15 bp):
AGAATAAAGAAATCC
Found at i:84338002 original size:15 final size:15
Alignment explanation
Indices: 84337955--84338002 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
84337945 CAAGAAAAGA
84337955 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
84337969 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
84337985 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
84338000 ATA
1 ATA
84338003 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84340985 original size:46 final size:46
Alignment explanation
Indices: 84340910--84341084 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
84340900 TGTAACCCGC
* * *
84340910 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * * *
84340956 CCATGAGTGAACTCGGACTCAGCTCAACGAGTTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GGC-ATTTGCAT
* * * * *
84341006 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
84341049 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
84341085 ATGCCCAAAC
Statistics
Matches: 103, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 57 0.55
47 26 0.25
48 2 0.02
49 3 0.03
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:84341030 original size:93 final size:93
Alignment explanation
Indices: 84340917--84341089 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
84340907 CGCCCATAAG
* * * * * *
84340917 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAACTCGGACTCAGCTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84340982 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
84341010 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
84341075 ACGAGTTCGGATGCC
66 ACGAGTTCAGATGCC
84341090 CAAACATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:84345851 original size:14 final size:14
Alignment explanation
Indices: 84345832--84345870 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
84345822 ATATTTGACT
*
84345832 TGTTCTTAATTATG
1 TGTTCTTAATTATA
*
84345846 TGTTCTTAATTGTA
1 TGTTCTTAATTATA
*
84345860 TGCTCTTAATT
1 TGTTCTTAATT
84345871 CTTTTTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.10, G:0.13, T:0.56
Consensus pattern (14 bp):
TGTTCTTAATTATA
Found at i:84346605 original size:18 final size:19
Alignment explanation
Indices: 84346584--84346620 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
84346574 TTACAATTTA
*
84346584 AATTTTT-ATTTTTTTTCT
1 AATTTTTCATTTATTTTCT
84346602 AATTTTTCATTTATTTTCT
1 AATTTTTCATTTATTTTCT
84346621 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (19 bp):
AATTTTTCATTTATTTTCT
Found at i:84349756 original size:13 final size:13
Alignment explanation
Indices: 84349738--84349768 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
84349728 AAAGTAAGAG
84349738 ACGGCTATGTGAC
1 ACGGCTATGTGAC
*
84349751 ACGGCTGTGTGAC
1 ACGGCTATGTGAC
84349764 ACGGC
1 ACGGC
84349769 CGTGTGCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.19, C:0.26, G:0.35, T:0.19
Consensus pattern (13 bp):
ACGGCTATGTGAC
Found at i:84349773 original size:13 final size:13
Alignment explanation
Indices: 84349745--84349774 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
84349735 GAGACGGCTA
*
84349745 TGTGACACGGCTG
1 TGTGACACGGCCG
84349758 TGTGACACGGCCG
1 TGTGACACGGCCG
84349771 TGTG
1 TGTG
84349775 CACTCACACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.23, G:0.40, T:0.23
Consensus pattern (13 bp):
TGTGACACGGCCG
Found at i:84354132 original size:14 final size:14
Alignment explanation
Indices: 84354109--84354147 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
84354099 ATATTTGAGT
84354109 TGTTCTTAATTACG
1 TGTTCTTAATTACG
* *
84354123 TGTTCCTAATTATG
1 TGTTCTTAATTACG
84354137 TGTTCTTAATT
1 TGTTCTTAATT
84354148 CTTGTTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.54
Consensus pattern (14 bp):
TGTTCTTAATTACG
Found at i:84357478 original size:46 final size:47
Alignment explanation
Indices: 84357411--84357537 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 47
84357401 TATGTGTATG
* *
84357411 AGTGTAAGACATGTGTAGGACATGCATCGGCT-ACA-TTATG-AGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCTCA-AGATATGCA-AGCT
* * *
84357457 AGTGTAAGACATGTCTTGGACATGTATTGGCCTCAAGATATGCAAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCGG-CTCAAGATATGCAAGCT
* * *
84357505 AGTGTAAGACCTGTCTGGGACATGGCTTCGGCT
1 AGTGTAAGACATGTCTAGGACAT-GCATCGGCT
84357538 TGACATGTGT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
46 26 0.39
47 3 0.05
48 32 0.48
49 5 0.08
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCTCAAGATATGCAAGCT
Found at i:84357636 original size:49 final size:49
Alignment explanation
Indices: 84357447--84357722 Score: 189
Period size: 49 Copynumber: 5.8 Consensus size: 49
84357437 TCGGCTACAT
* * * * * *
84357447 TATGAGAGCTAGTGTAAGACATGTCTTGGACAT-GTATTGGCCTCAAGA
1 TATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATTCGCCTCGATA
* *
84357495 TATGCA-AGCTAGTGTAAGACCTGTCTGGGACATGGC-TTCGGCTTG--A
1 TATG-AGAGCTAGTGTAAGACCTGTCTGGGACATGGCATTCGCCTCGATA
* * * *
84357541 CATGTG-TC-AGTGTAAGACCTGTCTCGGACATGGCA-TCGACAC-CGATA
1 TATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATTCG-C-CTCGATA
* * * *
84357588 GATGAGAGCTAGTGTACGACCTGTCTAGGACATGGCATTTGCCTCGATA
1 TATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATTCGCCTCGATA
** * * * *
84357637 TATGA-AATTCAGTGTAAGACCTGTCTGGGACGTGGCA-TCGACT-TAGA
1 TATGAGAGCT-AGTGTAAGACCTGTCTGGGACATGGCATTCGCCTCGATA
* * * *
84357684 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
1 TATGAGAGCTAGTGTAAGACC-TGTCTGGGACATGGCAT
84357723 CGGCATCGTA
Statistics
Matches: 176, Mismatches: 36, Indels: 31
0.72 0.15 0.13
Matches are distributed among these distances:
44 28 0.16
45 2 0.01
46 5 0.03
47 22 0.12
48 56 0.32
49 61 0.35
50 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (49 bp):
TATGAGAGCTAGTGTAAGACCTGTCTGGGACATGGCATTCGCCTCGATA
Found at i:84362172 original size:44 final size:44
Alignment explanation
Indices: 84362109--84362265 Score: 162
Period size: 43 Copynumber: 3.6 Consensus size: 44
84362099 TGTTTTTTCG
* *
84362109 TGTAAGACCACGTCTGGGATGTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGATTTAAA
* * * **
84362153 TGTAAGACCACGTCTGGGATGTTTGTATC-ATATTTGATTT-TG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTAAA
**
84362195 TGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGA-TTAAA
1 TGTAAGACCAC-GTCTGGGACGTTGGCATCGATATTTGATTTAAA
* *
84362238 TGTAAGAGCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
84362266 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 38 0.41
44 30 0.32
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTAAA
Found at i:84371021 original size:56 final size:56
Alignment explanation
Indices: 84370956--84371068 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
84370946 CATATAAAAT
*
84370956 AAAAGTCAATAGTAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
1 AAAAGTCAATAGCAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
*
84371012 AAAAGTCAATAGCCAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
1 AAAAGTCAATAGCAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
84371068 A
1 A
84371069 TGCTCATTTG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (56 bp):
AAAAGTCAATAGCAAGAACTCATAGCCATTTCACAGAGTAATTCATGAGCCTAACC
Found at i:84371437 original size:44 final size:43
Alignment explanation
Indices: 84371304--84371441 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 43
84371294 TCCCGGACGT
* * * *
84371304 GGTCTTACATGT-AATTCAGTATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAATTCA-AATCGATGCCTATGTCCCAAACAC
* * * * *
84371347 GGTCTTACACG-AAA-TCAGATACGATGTCGATGTCCCAAACAT
1 GGTCTTACATGTAAATTCAAAT-CGATGCCTATGTCCCAAACAC
* *
84371389 GGTCTTACATGTAAATCTCAAATCGAGGCCTATGTCCCATACAC
1 GGTCTTACATGTAAAT-TCAAATCGATGCCTATGTCCCAAACAC
84371433 GGTCTTACA
1 GGTCTTACA
84371442 CTATATCTCA
Statistics
Matches: 76, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 29 0.38
43 15 0.20
44 25 0.33
45 5 0.07
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTAAATTCAAATCGATGCCTATGTCCCAAACAC
Found at i:84371740 original size:22 final size:22
Alignment explanation
Indices: 84371715--84371758 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
84371705 ATCTAAAACA
84371715 ATTCAAATTCAATC-ATTCAATC
1 ATTC-AATTCAATCAATTCAATC
* *
84371737 ATTCATTTCATTCAATTCAATC
1 ATTCAATTCAATCAATTCAATC
84371759 CATATGCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTCAATTCAATCAATTCAATC
Found at i:84372707 original size:42 final size:43
Alignment explanation
Indices: 84372650--84372749 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
84372640 ATGATTTACA
* *
84372650 TGTAAGACCACGTCTGGGACATTGGCATC-GTATTTGATTTTT
1 TGTAAGACCACGTCTGGGACAATGGCATCAATATTTGATTTTT
***
84372692 TGTAAGACC-CTGTCTGGGACAATGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAATGGCATCAATATTTGATTTTT
*
84372735 TGTAAGACTACGTCT
1 TGTAAGACCACGTCT
84372750 TGGATGTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.02
42 26 0.53
43 21 0.43
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAATGGCATCAATATTTGATTTTT
Found at i:84377850 original size:43 final size:43
Alignment explanation
Indices: 84377739--84377858 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 43
84377729 TTGGGACGTT
**
84377739 GGCATCGAT-TTATGATTTACGTGTAAGACCATGTCTGAGACATT
1 GGCATCGATATT-TGA-TTACGTGTAAGACCATGTCTGAGACAGC
* * *
84377783 GGCATCG--ATTTGATTTCGTGTAAGACCCTGTCTGGGACAGC
1 GGCATCGATATTTGATTACGTGTAAGACCATGTCTGAGACAGC
* *
84377824 GGCATCGATATTTGATTACATGTAAGACCACGTCT
1 GGCATCGATATTTGATTACGTGTAAGACCATGTCT
84377859 AGGACATTGG
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 30 0.47
42 3 0.05
43 24 0.38
44 7 0.11
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
GGCATCGATATTTGATTACGTGTAAGACCATGTCTGAGACAGC
Found at i:84377871 original size:43 final size:42
Alignment explanation
Indices: 84377732--84377871 Score: 144
Period size: 43 Copynumber: 3.3 Consensus size: 42
84377722 ATCATGTTTG
* *
84377732 GGACGTTGGCATCGAT-TTATGATTTACGTGTAAGACCATGTCT
1 GGACATTGGCATCGATATT-TGA-TTACGTGTAAGACCACGTCT
*
84377775 GAGACATTGGCATCG--ATTTGATTTCGTGTAAGACC-CTGTCT
1 G-GACATTGGCATCGATATTTGATTACGTGTAAGACCAC-GTCT
** *
84377816 GGGACAGCGGCATCGATATTTGATTACATGTAAGACCACGTCT
1 -GGACATTGGCATCGATATTTGATTACGTGTAAGACCACGTCT
84377859 AGGACATTGGCAT
1 -GGACATTGGCAT
84377872 TGTACGAGCT
Statistics
Matches: 80, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
41 28 0.35
42 4 0.05
43 35 0.44
44 13 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
GGACATTGGCATCGATATTTGATTACGTGTAAGACCACGTCT
Found at i:84380918 original size:37 final size:37
Alignment explanation
Indices: 84380868--84380946 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
84380858 TTATTACGAA
* *
84380868 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
84380905 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
84380942 GTCTT
1 GTCTT
84380947 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:84381143 original size:47 final size:47
Alignment explanation
Indices: 84381065--84381508 Score: 701
Period size: 47 Copynumber: 9.5 Consensus size: 47
84381055 CCCTTCGGGA
* * * * * * *
84381065 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84381112 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
84381158 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
84381205 CTTATTACAAATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84381252 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84381299 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84381346 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
84381393 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84381440 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
84381487 CTTATCACATACATACACTTTC
1 CTTATCACATATATACACTTTC
84381509 TTGGCTGAAT
Statistics
Matches: 375, Mismatches: 21, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 43 0.11
47 332 0.89
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.