Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 119882356
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2655529 characters in sequence are not A, C, G, or T
File 25 of 362
Found at i:7293262 original size:3 final size:3
Alignment explanation
Indices: 7293249--7293350 Score: 68
Period size: 3 Copynumber: 34.7 Consensus size: 3
7293239 ATTAATTGGA
* * * *
7293249 TAT TTT TAT TAT TAT T-G TATT TAT TAT TAT TGT TAC TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * **
7293293 T-T TAT TGT TAC TAT TAT TAT TACA TAT TAT TAT TCG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
*
7293338 TTT TA- TAT TAT TA
1 TAT TAT TAT TAT TA
7293351 CCAGTATTAA
Statistics
Matches: 74, Mismatches: 20, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
2 7 0.09
3 63 0.85
4 4 0.05
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:7293297 original size:22 final size:21
Alignment explanation
Indices: 7293266--7293310 Score: 67
Period size: 19 Copynumber: 2.2 Consensus size: 21
7293256 ATTATTATTG
7293266 TATTTATTATTATTGTTACTAT
1 TATTTATT-TTATTGTTACTAT
7293288 TA-TT-TTTTATTGTTACTAT
1 TATTTATTTTATTGTTACTAT
7293307 TATT
1 TATT
7293311 ATTACATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 15 0.68
20 3 0.14
21 2 0.09
22 2 0.09
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (21 bp):
TATTTATTTTATTGTTACTAT
Found at i:7293477 original size:19 final size:19
Alignment explanation
Indices: 7293438--7293504 Score: 50
Period size: 19 Copynumber: 3.5 Consensus size: 19
7293428 CCATTATCAC
7293438 TATTATTTTCCT-TTA-TCAT
1 TATTATTTT-CTATTACT-AT
7293457 TATTATTTTCTATTACTAT
1 TATTATTTTCTATTACTAT
* *
7293476 TAATATATTAT-TATTACTTT
1 T-AT-TATTTTCTATTACTAT
*
7293496 TTTTATTTT
1 TATTATTTT
7293505 ATTATTATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
18 7 0.17
19 16 0.40
20 12 0.30
21 5 0.12
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTATTTTCTATTACTAT
Found at i:7293624 original size:20 final size:20
Alignment explanation
Indices: 7293589--7293626 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7293579 TATTTTCTAC
*
7293589 TTATTATTGTATTATTACTA
1 TTATTATTGTAGTATTACTA
*
7293609 TTATTATTGTCGTATTAC
1 TTATTATTGTAGTATTAC
7293627 AAAACTAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (20 bp):
TTATTATTGTAGTATTACTA
Found at i:7294622 original size:202 final size:205
Alignment explanation
Indices: 7294242--7294653 Score: 641
Period size: 202 Copynumber: 2.0 Consensus size: 205
7294232 AATCCTTCCT
* *
7294242 TATATGTAACCGATTTTCAAACCCGTTTTTCTGATTTTCGTAGACCAAAATCGTTGTTTTGATTA
1 TATACGTAACCGATTTTCAAACCCGTTTTTCTGATTTTCATAGACCAAAATCGTTGTTTTGATTA
* ** * *
7294307 ATCAATCTATTTATTGAAAAACAACCACTTTTTGAGGTGACTCGATCACATCTCGTCAAAAAGGA
66 ATCAATCTATTTATTGAAAAACAACCAC---TTCAGAAGACTCGATCACACCTCGTCAAAAAGAA
* **
7294372 CTGATGGCGAGTCTTGTTTCTTTTTTCTTTTCAAAAATCAAAGTCAACCCCATTTTAAAAAATGG
128 CTGATGGCGACTCTTGTTTCTTTTTTCTTTTCAAAAATCAAAGTCAACCCCATTTTAAAAAATAA
*
7294437 TTTCCACAATATA
193 TTTCAACAATATA
**
7294450 TATACGTAACCGATTTTCGGA-CCGTTTTTCTGATTTTCATAGACCAAAATCGTTGTTTTGATTA
1 TATACGTAACCGATTTTCAAACCCGTTTTTCTGATTTTCATAGACCAAAATCGTTGTTTTGATTA
*
7294514 ATCAATCTATTTATTGAAAAACAACCAC-TCA-AAGACTCGATCACACCTCGTCAAAAAGAATTG
66 ATCAATCTATTTATTGAAAAACAACCACTTCAGAAGACTCGATCACACCTCGTCAAAAAGAACTG
*
7294577 ATGGCGACTCTTGTTTCTTTTTTCTTTTCAAAAATCAAAGTCAACCCCATTTTAAAATATAATTT
131 ATGGCGACTCTTGTTTCTTTTTTCTTTTCAAAAATCAAAGTCAACCCCATTTTAAAAAATAATTT
7294642 CAACAATATA
196 CAACAATATA
7294652 TA
1 TA
7294654 CACATTAAAC
Statistics
Matches: 189, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
202 99 0.52
203 2 0.01
207 70 0.37
208 18 0.10
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (205 bp):
TATACGTAACCGATTTTCAAACCCGTTTTTCTGATTTTCATAGACCAAAATCGTTGTTTTGATTA
ATCAATCTATTTATTGAAAAACAACCACTTCAGAAGACTCGATCACACCTCGTCAAAAAGAACTG
ATGGCGACTCTTGTTTCTTTTTTCTTTTCAAAAATCAAAGTCAACCCCATTTTAAAAAATAATTT
CAACAATATA
Found at i:7297255 original size:102 final size:102
Alignment explanation
Indices: 7297071--7297275 Score: 304
Period size: 102 Copynumber: 2.0 Consensus size: 102
7297061 AGAGTGTCAC
*
7297071 ATCATTGAACTTTGATTATTTTTCGAAGTTCAAAGATTAAAATAAATCTAATTTTCAACGTCAAA
1 ATCATTGAACTTTGATTATTTTTCGAAGTTCAAAGATTAAAATAAATATAATTTTCAACGTCAAA
* * * *
7297136 TACTGAAGTGGATAAAAGAATATAGGTACCAAACTAG
66 TACTAAAGTAGACAAAAGAATATAGGAACCAAACTAG
* * * * *
7297173 ATCATTGAATTTTGATTATTTTTGGAAGTTTAAAGATTAAAATGAATATAATTGTT-AACTTCAA
1 ATCATTGAACTTTGATTATTTTTCGAAGTTCAAAGATTAAAATAAATATAATT-TTCAACGTCAA
7297237 ATACTAAAGTAGACAAAAGAATATAGGAACCAAACTAG
65 ATACTAAAGTAGACAAAAGAATATAGGAACCAAACTAG
7297275 A
1 A
7297276 CTTAGGGTGG
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 90 0.98
103 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.33
Consensus pattern (102 bp):
ATCATTGAACTTTGATTATTTTTCGAAGTTCAAAGATTAAAATAAATATAATTTTCAACGTCAAA
TACTAAAGTAGACAAAAGAATATAGGAACCAAACTAG
Found at i:7308639 original size:26 final size:24
Alignment explanation
Indices: 7308603--7308657 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 24
7308593 GTAGCAGACA
*
7308603 AAAAATTTTAAAATATAATTAAAATT
1 AAAAATTTTAAAA-AT-ATTAAAAAT
*
7308629 AAAAATTTTAAAAATTTTAAAAAT
1 AAAAATTTTAAAAATATTAAAAAT
7308653 AAAAA
1 AAAAA
7308658 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 12 0.44
25 2 0.07
26 13 0.48
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAAATTTTAAAAATATTAAAAAT
Found at i:7308651 original size:10 final size:9
Alignment explanation
Indices: 7308627--7308652 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7308617 ATAATTAAAA
7308627 TTAAAAATT
1 TTAAAAATT
7308636 TTAAAAATT
1 TTAAAAATT
7308645 TTAAAAAT
1 TTAAAAAT
7308653 AAAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TTAAAAATT
Found at i:7313753 original size:52 final size:52
Alignment explanation
Indices: 7313693--7313809 Score: 155
Period size: 52 Copynumber: 2.2 Consensus size: 52
7313683 AATGATATAT
*
7313693 GTATAAGACTATAGCTGGGCTATGACATCAGAAAACAAGTAATAAGTGAT-CC
1 GTATAAGACCATAGCTGGGCTATGACATCAGAAAA-AAGTAATAAGTGATCCC
* * * * *
7313745 GTATAAGACCATAGCTGGGCTATGGCATTAGAGAAAAGTGATAAGTGCTCCC
1 GTATAAGACCATAGCTGGGCTATGACATCAGAAAAAAGTAATAAGTGATCCC
*
7313797 GTGTAAGACCATA
1 GTATAAGACCATA
7313810 TCCGAGATAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 12 0.21
52 45 0.79
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (52 bp):
GTATAAGACCATAGCTGGGCTATGACATCAGAAAAAAGTAATAAGTGATCCC
Found at i:7314955 original size:21 final size:21
Alignment explanation
Indices: 7314931--7314972 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7314921 TTGGGCCTTG
*
7314931 TAGGCTCATATTAGGGACTTT
1 TAGGCCCATATTAGGGACTTT
7314952 TAGGCCCATATTAGGGACTTT
1 TAGGCCCATATTAGGGACTTT
7314973 ATCATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (21 bp):
TAGGCCCATATTAGGGACTTT
Found at i:7315588 original size:32 final size:31
Alignment explanation
Indices: 7315517--7315593 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 31
7315507 TGTACATTCC
* * *
7315517 TTTCCAGGTGGTACACACAATATACCTAACA
1 TTTCCAAGTTGTACACACAATATACATAACA
* *
7315548 TTTCCAAG-TGTACACACAAAGTGTACATAACC
1 TTTCCAAGTTGTACACAC-AA-TATACATAACA
*
7315580 TTTTCAAGTTGTAC
1 TTTCCAAGTTGTAC
7315594 CATTTGGGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
30 8 0.22
31 9 0.24
32 15 0.41
33 5 0.14
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (31 bp):
TTTCCAAGTTGTACACACAATATACATAACA
Found at i:7323506 original size:18 final size:18
Alignment explanation
Indices: 7323474--7323508 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7323464 TCTCTTAATA
*
7323474 ATTTAATTAAGAAATTAC
1 ATTTAATTAACAAATTAC
*
7323492 ATTTAATTATCAAATTA
1 ATTTAATTAACAAATTA
7323509 AATAACACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTTAATTAACAAATTAC
Found at i:7328166 original size:22 final size:22
Alignment explanation
Indices: 7328119--7328166 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7328109 AAATGGTAGC
*
7328119 AAAATAATGAGAAAACAACAAG
1 AAAATAATGAGAAAACAACAAA
*
7328141 AAAATAAT-AGTAAAACAATAAA
1 AAAATAATGAG-AAAACAACAAA
7328163 AAAA
1 AAAA
7328167 GAGCAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.73, C:0.06, G:0.08, T:0.12
Consensus pattern (22 bp):
AAAATAATGAGAAAACAACAAA
Found at i:7329340 original size:10 final size:10
Alignment explanation
Indices: 7329294--7329364 Score: 65
Period size: 10 Copynumber: 7.0 Consensus size: 10
7329284 TTAAGACTAA
7329294 TTTTAATATAT
1 TTTTAATA-AT
7329305 TTTTAATAAT
1 TTTTAATAAT
* *
7329315 TTCTT-ATTAG
1 TT-TTAATAAT
7329325 TTTTAATAAT
1 TTTTAATAAT
7329335 TTTTAAATAAT
1 TTTT-AATAAT
**
7329346 TTTCCATAAT
1 TTTTAATAAT
7329356 TTTT-ATAAT
1 TTTTAATAAT
7329365 GATTTGAAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 7 0.14
10 24 0.48
11 19 0.38
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:7329360 original size:31 final size:30
Alignment explanation
Indices: 7329294--7329364 Score: 74
Period size: 31 Copynumber: 2.3 Consensus size: 30
7329284 TTAAGACTAA
* *
7329294 TTTTAATATATTTTTAATAATTTCTTATTAG
1 TTTTAATA-ATTTTTAATAATTTCTCATAAG
7329325 TTTTAATAATTTTTAAATAATTT-TCCATAA-
1 TTTTAATAATTTTT-AATAATTTCT-CATAAG
*
7329355 TTTTTATAAT
1 TTTTAATAAT
7329365 GATTTGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
30 16 0.46
31 19 0.54
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTTAATAATTTTTAATAATTTCTCATAAG
Found at i:7331557 original size:56 final size:56
Alignment explanation
Indices: 7331388--7331546 Score: 210
Period size: 56 Copynumber: 2.8 Consensus size: 56
7331378 ACATACATAC
* * * * * * *
7331388 ATTCAGTCATATCATATATTGCCATAGGTTTTAACCTTATGATATTACTTACATTT
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
* *
7331444 ATTCAGTCATTTCATATCTTGCCATGGGTCTTAACCTCATGGTCTTACATACATTC
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
* * *
7331500 ATTTAGCCATTTCATATCTTGCCATAGGTCTTAACCTCATGGTCTTA
1 ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTA
7331547 TAAATATTCA
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 91 1.00
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (56 bp):
ATTCAGTCATTTCATATATTGCCATAGGTCTTAACCTCATGGTCTTACATACATTC
Found at i:7332249 original size:18 final size:18
Alignment explanation
Indices: 7332204--7332249 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7332194 CTAAAGGAGT
7332204 TGAGAGTTAGTGGGTTAG
1 TGAGAGTTAGTGGGTTAG
* *
7332222 TGGGATTTAGT-GGTTAG
1 TGAGAGTTAGTGGGTTAG
7332239 TGAGAGGTTAG
1 TGAGA-GTTAG
7332250 GATAGATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (18 bp):
TGAGAGTTAGTGGGTTAG
Found at i:7359880 original size:18 final size:19
Alignment explanation
Indices: 7359841--7359889 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
7359831 AAATCAAAAT
*
7359841 AAATTTCAAAATAATTTCTA
1 AAATTT-AAAATAATTTATA
7359861 AAATTTAAAAT-ATTTATA
1 AAATTTAAAATAATTTATA
*
7359879 AAATTTCAAAT
1 AAATTTAAAAT
7359890 TTATATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 16 0.59
19 5 0.19
20 6 0.22
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATTTAAAATAATTTATA
Found at i:7359893 original size:16 final size:17
Alignment explanation
Indices: 7359853--7359894 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
7359843 ATTTCAAAAT
*
7359853 AATTTCTAAAATTTAAA
1 AATTTATAAAATTTAAA
*
7359870 ATATTTATAAAATTT-CA
1 A-ATTTATAAAATTTAAA
7359887 AATTTATA
1 AATTTATA
7359895 TTTTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 7 0.32
17 3 0.14
18 12 0.55
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTATAAAATTTAAA
Found at i:7360594 original size:6 final size:6
Alignment explanation
Indices: 7360585--7360632 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
7360575 ATGTTCTGTA
* *
7360585 CTTTTT CTTTTT C-TTTT CCTTTT C--TTT CTTTTT ATTTTT C-TTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
7360629 CTTT
1 CTTT
7360633 CTTCCTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 4 0.11
5 10 0.28
6 22 0.61
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:7360613 original size:21 final size:21
Alignment explanation
Indices: 7360588--7360635 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7360578 TTCTGTACTT
*
7360588 TTTCTTTTTCTTTTCCTTTTC
1 TTTCTTTTTATTTTCCTTTTC
*
7360609 TTTCTTTTTATTTTTCTTTTC
1 TTTCTTTTTATTTTCCTTTTC
7360630 TTTCTT
1 TTTCTT
7360636 CCTTTTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTCTTTTTATTTTCCTTTTC
Found at i:7360615 original size:27 final size:25
Alignment explanation
Indices: 7360592--7360641 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 25
7360582 GTACTTTTTC
*
7360592 TTTTTCTTTTCCTTTTCTTTCTTTTTA
1 TTTTTCTTTT-C-TTTCTTCCTTTTTA
7360619 TTTTTCTTTTCTTTCTTCCTTTT
1 TTTTTCTTTTCTTTCTTCCTTTT
7360642 ACTTCTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 1 0.05
27 10 0.45
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTCTTTTCTTTCTTCCTTTTTA
Found at i:7375011 original size:6 final size:6
Alignment explanation
Indices: 7375002--7375037 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
7374992 CATGTCTTCG
7375002 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
7375038 GTCTCTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCCT
Found at i:7382567 original size:26 final size:27
Alignment explanation
Indices: 7382538--7382593 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
7382528 AAAGAATGAC
* *
7382538 ATATATGAA-TAATTTTAAAATAAATA
1 ATATATAAATTAATTTAAAAATAAATA
*
7382564 ATATATAAATTAATTTAAAAATAATTA
1 ATATATAAATTAATTTAAAAATAAATA
7382591 ATA
1 ATA
7382594 AGAAGTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (27 bp):
ATATATAAATTAATTTAAAAATAAATA
Found at i:7382725 original size:17 final size:17
Alignment explanation
Indices: 7382703--7382742 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7382693 TGAAATATAT
*
7382703 AATATACAATAACTTAA
1 AATATAAAATAACTTAA
*
7382720 AATATAAAATAATTTAA
1 AATATAAAATAACTTAA
7382737 AATATA
1 AATATA
7382743 TATATAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
AATATAAAATAACTTAA
Found at i:7384146 original size:23 final size:24
Alignment explanation
Indices: 7384101--7384146 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
7384091 TATTACAAGA
**
7384101 AACACTAAAAAATAAATCCAATTT
1 AACACTAAAAAATAAATAAAATTT
*
7384125 AACACT-AAAAATATATAAAATT
1 AACACTAAAAAATAAATAAAATT
7384147 AGTTAAAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (24 bp):
AACACTAAAAAATAAATAAAATTT
Found at i:7387852 original size:16 final size:16
Alignment explanation
Indices: 7387828--7387869 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7387818 AGAATTAGTT
7387828 ATATTAAAATTATTTA
1 ATATTAAAATTATTTA
* *
7387844 ATTTTAAAAATATTTA
1 ATATTAAAATTATTTA
7387860 ATATTAAAAT
1 ATATTAAAAT
7387870 AATAAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:7397684 original size:38 final size:38
Alignment explanation
Indices: 7397636--7397772 Score: 150
Period size: 38 Copynumber: 3.6 Consensus size: 38
7397626 TAACATTTTT
* *
7397636 TTGTAGATTCTCGGGTAATATAACGAGATCTAGCCTTA
1 TTGTAGATTCTCAGGTAATATAACGAGATCTAGCCTTG
** *
7397674 TTGTAGATTCTC-GAGTAATATAGTGAGATCTAGACTTG
1 TTGTAGATTCTCAG-GTAATATAACGAGATCTAGCCTTG
* * * *
7397712 TTGCAGATTCTTAGGTACTATAACGAGATCTACCACTTG
1 TTGTAGATTCTCAGGTAATATAACGAGATCTAGC-CTTG
* *
7397751 TCGTGGATTCTCAGGTAATATA
1 TTGTAGATTCTCAGGTAATATA
7397773 TAACATAGGT
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
37 1 0.01
38 57 0.71
39 22 0.28
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (38 bp):
TTGTAGATTCTCAGGTAATATAACGAGATCTAGCCTTG
Found at i:7400349 original size:18 final size:18
Alignment explanation
Indices: 7400326--7400365 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7400316 TATAATTTTA
*
7400326 AAAAATA-TATAATACATC
1 AAAAATATTA-AAAACATC
7400344 AAAAATATTAAAAACATC
1 AAAAATATTAAAAACATC
7400362 AAAA
1 AAAA
7400366 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATATTAAAAACATC
Found at i:7400485 original size:30 final size:30
Alignment explanation
Indices: 7400449--7400507 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
7400439 CTTAACAAAC
7400449 AAATGTCTCTAAAATAATAACAAAATTAAG
1 AAATGTCTCTAAAATAATAACAAAATTAAG
*
7400479 AAATGTCTTTAAAATAATAACAAAATTAA
1 AAATGTCTCTAAAATAATAACAAAATTAA
7400508 CAATAAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAG
Found at i:7400565 original size:22 final size:22
Alignment explanation
Indices: 7400540--7400582 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7400530 TATCCAAACA
7400540 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
7400562 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
7400583 AAAAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:7403527 original size:21 final size:19
Alignment explanation
Indices: 7403495--7403545 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
7403485 ATTTAAGTAT
7403495 AATTTATAAAAATTAAAAAA
1 AATTT-TAAAAATTAAAAAA
* *
7403515 ATATATTTAAAAATTCAACAA
1 A-AT-TTTAAAAATTAAAAAA
7403536 AATTTTAAAA
1 AATTTTAAAA
7403546 TTTCTCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 7 0.26
20 3 0.11
21 15 0.56
22 2 0.07
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTTAAAAATTAAAAAA
Found at i:7403607 original size:5 final size:5
Alignment explanation
Indices: 7403597--7403638 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
7403587 CTGTTAGCAC
7403597 GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GT
1 GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GTGTA GT
7403639 TATTAGTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
GTGTA
Found at i:7406629 original size:23 final size:23
Alignment explanation
Indices: 7406602--7406645 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7406592 AATTTTAAGG
7406602 TTTATATATTTAATAAAAGAAAA
1 TTTATATATTTAATAAAAGAAAA
* *
7406625 TTTATATATTTTATAAGAGAA
1 TTTATATATTTAATAAAAGAA
7406646 TGTCATATGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (23 bp):
TTTATATATTTAATAAAAGAAAA
Found at i:7406881 original size:61 final size:61
Alignment explanation
Indices: 7406806--7406921 Score: 205
Period size: 61 Copynumber: 1.9 Consensus size: 61
7406796 AGTAGTTACC
*
7406806 AAAATGAGAAAATGTGTATACCTTAAAGATCAAATCGTGAATTAAGCTAAATTTAGATACT
1 AAAATGAGAAAATGTGTATACCTTAAAGATCAAATCATGAATTAAGCTAAATTTAGATACT
* *
7406867 AAAATGAGAAAATGTGTATACTTTAAAGGTCAAATCATGAATTAAGCTAAATTTA
1 AAAATGAGAAAATGTGTATACCTTAAAGATCAAATCATGAATTAAGCTAAATTTA
7406922 ATTAATAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.30
Consensus pattern (61 bp):
AAAATGAGAAAATGTGTATACCTTAAAGATCAAATCATGAATTAAGCTAAATTTAGATACT
Found at i:7407703 original size:21 final size:22
Alignment explanation
Indices: 7407660--7407707 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7407650 AAACATTTAA
*
7407660 TTATTTTATGGAATTAATGATTT
1 TTATTTTAT-GAATTAATAATTT
*
7407683 TTATTTTAT-AATTTATAATTT
1 TTATTTTATGAATTAATAATTT
7407704 TTAT
1 TTAT
7407708 ACTTTACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.61
23 9 0.39
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (22 bp):
TTATTTTATGAATTAATAATTT
Found at i:7411668 original size:37 final size:36
Alignment explanation
Indices: 7411367--7411761 Score: 165
Period size: 38 Copynumber: 10.6 Consensus size: 36
7411357 GTCAATGCCG
* * * *
7411367 ACCTTTAAAATGGGTTGGTATAGACCTAGTC-AAGACCA
1 ACCTTTAAAA-AGGTTGGGATAGACAT-GTCTAAG-GCA
* ** * * * *
7411405 ACCTTTGAAAAATGTTGTTATAAACCTGTATAAGGTA
1 ACCTTT-AAAAAGGTTGGGATAGACATGTCTAAGGCA
* * * *
7411442 A-CTATAAAAAGGTTGGTATAGTTCTTGTCTAAGGCA
1 ACCTTTAAAAAGGTTGGGATAG-ACATGTCTAAGGCA
* * *
7411478 ACTTTTAAGAATA-GTTGGGATAGATC-CGTCTATGGCA
1 ACCTTTAA-AA-AGGTTGGGATAGA-CATGTCTAAGGCA
* * * * *
7411515 ACCTTT-AAAAGGTTGGGATAGGCCTTGCCAAAAGCA
1 ACCTTTAAAAAGGTTGGGATA-GACATGTCTAAGGCA
* ** * * * * *
7411551 ACCCTTAAAAAAAAATTGGTATAAACCTTATCTAAAGCA
1 A-CCTT-TAAAAAGGTTGGGATAGA-CATGTCTAAGGCA
* *
7411590 ACTTTTTTAAAAA-GTTGGGATAGATCTTGTCTAAGGCA
1 AC--CTTTAAAAAGGTTGGGATAGA-CATGTCTAAGGCA
* *
7411628 ACCTTTAGGAAAGGTTGGGATAGACATGTTTAAGGCA
1 ACCTTTA-AAAAGGTTGGGATAGACATGTCTAAGGCA
* * *
7411665 ACCTTTTAAAAATGTTAGAATAGACATTGTCTAAGGCA
1 ACC-TTTAAAAAGGTTGGGATAGACA-TGTCTAAGGCA
* * * * *
7411703 ACCTTAAAAAAAGGTTGGGATATACTTGTTTAAAGCA
1 ACCTT-TAAAAAGGTTGGGATAGACATGTCTAAGGCA
* *
7411740 A-CGTTAAAAAGGTTGCGATAGA
1 ACCTTTAAAAAGGTTGGGATAGA
7411762 TTCTTCTAAG
Statistics
Matches: 270, Mismatches: 66, Indels: 45
0.71 0.17 0.12
Matches are distributed among these distances:
34 1 0.00
35 40 0.15
36 29 0.11
37 69 0.26
38 97 0.36
39 32 0.12
40 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
ACCTTTAAAAAGGTTGGGATAGACATGTCTAAGGCA
Found at i:7411695 original size:75 final size:74
Alignment explanation
Indices: 7411583--7411741 Score: 203
Period size: 75 Copynumber: 2.1 Consensus size: 74
7411573 AAACCTTATC
* * * * **
7411583 TAAAGCAACTTTTTTAAAAAGTTGGGATAGATCTTGTCTAAGGCAACCTTTAGGAAAGGTTGGGA
1 TAAAGCAAC-CTTTTAAAAAGTTAGAATAGATCTTGTCTAAGGCAACCTTAAAAAAAGGTTGGGA
7411648 TAGACATGTT
65 TAGACATGTT
*
7411658 TAAGGCAACCTTTTAAAAATGTTAGAATAGA-CATTGTCTAAGGCAACCTTAAAAAAAGGTTGGG
1 TAAAGCAACCTTTTAAAAA-GTTAGAATAGATC-TTGTCTAAGGCAACCTTAAAAAAAGGTTGGG
* *
7411722 ATATACTTGTT
64 ATAGACATGTT
7411733 TAAAGCAAC
1 TAAAGCAAC
7411742 GTTAAAAAGG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
74 10 0.14
75 62 0.86
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (74 bp):
TAAAGCAACCTTTTAAAAAGTTAGAATAGATCTTGTCTAAGGCAACCTTAAAAAAAGGTTGGGAT
AGACATGTT
Found at i:7411737 original size:150 final size:151
Alignment explanation
Indices: 7411446--7411779 Score: 337
Period size: 150 Copynumber: 2.2 Consensus size: 151
7411436 AAGGTAACTA
* * * *
7411446 TAAAAAGGTTGGTATAGTTCTTGTCTAAGGCAACTTTTAAGAATAGTTGGGATAGATCCGTCTAT
1 TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATAGTTGGGATAGATCCGTCTAA
* * * * *
7411511 GGCAACCTTTAAAAGGTTGGGATAGGCCTTGCCAAAAGCAACCCTTAAAAAAAAATTGGTATAAA
66 GGCAACCTTTAAAAGGTTAGAATAGACATTGCCAAAAGCAACCCTTAAAAAAAAATTGGGATAAA
7411576 CCTTATCTAAAGCAACTTTTT
131 CCTTATCTAAAGCAACTTTTT
* * *
7411597 TAAAAA-GTTGGGATAGATCTTGTCTAAGGCAACCTTTAGGAA-AGGTTGGGATAGA-CATGTTT
1 TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATA-GTTGGGATAGATC-CGTCT
* * * * **
7411659 AAGGCAACCTTTTAAAAATGTTAGAATAGACATTGTCTAAGGCAA-CCTTAAAAAAAGGTTGGGA
64 AAGGCAACC-TTT-AAAAGGTTAGAATAGACATTGCCAAAAGCAACCCTTAAAAAAAAATTGGGA
* * * *
7411723 TATA-CTTGTTTAAAGCAAC---GT
127 TAAACCTTATCTAAAGCAACTTTTT
* *
7411744 TAAAAAGGTTGCGATAGAT-TCT-TCTAAGGTAACCTT
1 TAAAAAGGTTGGGATAGATCT-TGTCTAAGGCAACCTT
7411780 AAAAACATTG
Statistics
Matches: 153, Mismatches: 24, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
147 21 0.14
148 12 0.08
149 2 0.01
150 67 0.44
151 28 0.18
152 23 0.15
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (151 bp):
TAAAAAGGTTGGGATAGATCTTGTCTAAGGCAACCTTTAAGAATAGTTGGGATAGATCCGTCTAA
GGCAACCTTTAAAAGGTTAGAATAGACATTGCCAAAAGCAACCCTTAAAAAAAAATTGGGATAAA
CCTTATCTAAAGCAACTTTTT
Found at i:7411782 original size:35 final size:36
Alignment explanation
Indices: 7411596--7411784 Score: 113
Period size: 38 Copynumber: 5.2 Consensus size: 36
7411586 AGCAACTTTT
* *
7411596 TTAAAAA-GTTGGGATAGATCTT-GTCTAAGGCAACC
1 TTAAAAAGGTTGCGATAGA-CTTCTTCTAAGGCAACC
* * * *
7411631 TTTAGGAAAGGTTGGGATAGACATGTT-TAAGGCAACC
1 -TTA-AAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
* * *
7411668 TTTTAAAAATGTTAG-AATAGACATT-GTCTAAGGCAACC
1 --TTAAAAAGGTT-GCGATAGAC-TTCTTCTAAGGCAACC
* * * * *
7411706 TTAAAAAAAGGTTGGGATATACTTGTT-TAAAGCAACG
1 TT--AAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
*
7411743 TTAAAAAGGTTGCGATAGA-TTCTTCTAAGGTAACC
1 TTAAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
7411778 TTAAAAA
1 TTAAAAA
7411785 CATTGGTATT
Statistics
Matches: 121, Mismatches: 20, Indels: 25
0.73 0.12 0.15
Matches are distributed among these distances:
34 4 0.03
35 29 0.24
36 5 0.04
37 41 0.34
38 42 0.35
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (36 bp):
TTAAAAAGGTTGCGATAGACTTCTTCTAAGGCAACC
Found at i:7416116 original size:16 final size:16
Alignment explanation
Indices: 7416095--7416126 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7416085 TGCATATTTG
7416095 AAAAAAAACAGCCCAA
1 AAAAAAAACAGCCCAA
7416111 AAAAAAAACAGCCCAA
1 AAAAAAAACAGCCCAA
7416127 GGAAATATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.25, G:0.06, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAGCCCAA
Found at i:7416253 original size:18 final size:18
Alignment explanation
Indices: 7416214--7416255 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7416204 AAATAATAAC
* *
7416214 CAAA-AAATTAAATTTTA
1 CAAATAAATTAAAATTAA
*
7416231 TAAATAAATTAAAATTAA
1 CAAATAAATTAAAATTAA
7416249 CAAATAA
1 CAAATAA
7416256 CACATCAAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (18 bp):
CAAATAAATTAAAATTAA
Found at i:7424145 original size:29 final size:29
Alignment explanation
Indices: 7424102--7424165 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
7424092 ACCATAAAAT
* *
7424102 CCTAAACCTTAAAACCATACACCCTAAAG
1 CCTAAACCTTAAAACCATAAACCCTAAAC
7424131 CCTAAACTCTT-AAACCATAAACCCTAAAC
1 CCTAAAC-CTTAAAACCATAAACCCTAAAC
7424160 CCTAAA
1 CCTAAA
7424166 TATAGAAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 29 0.91
30 3 0.09
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (29 bp):
CCTAAACCTTAAAACCATAAACCCTAAAC
Found at i:7424160 original size:14 final size:14
Alignment explanation
Indices: 7424113--7424165 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
7424103 CTAAACCTTA
*
7424113 AAACCATACACCCT
1 AAACCATAAACCCT
*
7424127 AAAGCC-TAAACTCTT
1 AAA-CCATAAAC-CCT
7424142 AAACCATAAACCCT
1 AAACCATAAACCCT
*
7424156 AAACCCTAAA
1 AAACCATAAA
7424166 TATAGAAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 20 0.62
15 12 0.38
ACGTcount: A:0.47, C:0.34, G:0.02, T:0.17
Consensus pattern (14 bp):
AAACCATAAACCCT
Found at i:7424329 original size:7 final size:7
Alignment explanation
Indices: 7424319--7424362 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
7424309 GGCCAACTCT
*
7424319 TAAACCT
1 TAAACCC
*
7424326 TAAATCC
1 TAAACCC
7424333 TAAACCC
1 TAAACCC
7424340 TAAACCC
1 TAAACCC
7424347 TAAACACCC
1 T-AA-ACCC
7424356 TAAACCC
1 TAAACCC
7424363 ATTAGGCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 23 0.72
8 4 0.12
9 5 0.16
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:7424705 original size:130 final size:134
Alignment explanation
Indices: 7424472--7425062 Score: 343
Period size: 132 Copynumber: 4.4 Consensus size: 134
7424462 GGCATAGTGT
** * * * *
7424472 TGGACAAAGCTGACTCTTATTTAAGCGTTGCATTAAGCATGCATATCACAACCCTTATATAAAAA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTATACAAAGA
** * * * *
7424537 GTTAACCT-AAGCGTATGTCGGCAAGTCTATCCCAACACTT-AG-G-A-AAATATA-TATCGTCT
66 GTT-GGCTAAAGCATAAGTCGGCAAGTCTACCCCAACACTTAAGTGCACAAA-AAAGTATCGTCT
7424596 TAGGAC
129 TAGGAC
*** *
7424602 TGGACAAAGCCAACTCTTATTTAAGCGTTTTGTTTGGCATGCATATCCCAACCCTTATACAAAGA
1 TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTATACAAAGA
* * *
7424667 GTTGGCTAAAGCATAAGTTGGCCAGTCTACCCCAACACTTCAAAAAGTGTCACCAAAAAAGTGTC
66 GTTGGCTAAAGCATAAGTCGGCAAGTCTACCCCAACACTT----AAGTG-CA-CAAAAAAGTATC
7424732 GTCTTAGGAC
125 GTCTTAGGAC
** * * * * *
7424742 TATACAAAAGCCAACTTTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATACAAAG
1 TGGAC-AAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTATACAAAG
* * * *
7424807 AGTTGGCCAAAGC---A-T-----AGTCTATCCCAACACTTAGTAAAATGTCGC-CACAAAAGTG
65 AGTTGGCTAAAGCATAAGTCGGCAAGTCTACCCCAACAC-T--T--AA-GT-GCACAAAAAAGTA
7424862 TCGTCTTAGGAC
123 TCGTCTTAGGAC
** * * ** * * *
7424874 TATACAAAAGCCAACTTTTATTCAAGAATTGCCTTAGGCATACATATACCAACCCTTATACAAAG
1 TGGAC-AAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTATACAAAG
* * * *
7424939 AGTTGGCCAAAGC---A-T-----AGTCTATCCCAACACTTAGGAAATGTTGC-CACAAAAGTGT
65 AGTTGGCTAAAGCATAAGTCGGCAAGTCTACCCCAACACTT----AA-G-TGCACAAAAAAGTAT
7424994 CGTCTTAGGAC
124 CGTCTTAGGAC
* * * * * *
7425005 TAGACAAAAACCAACTCTTATTCAAGCGTTGCTTTAGGTATACATATCCCAACCCTTA
1 TGGAC-AAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTA
7425063 GGAAAGTGTT
Statistics
Matches: 395, Mismatches: 45, Indels: 41
0.82 0.09 0.09
Matches are distributed among these distances:
129 3 0.01
130 85 0.22
131 80 0.20
132 127 0.32
133 5 0.01
134 3 0.01
135 4 0.01
136 1 0.00
137 1 0.00
138 2 0.01
139 2 0.01
140 19 0.05
141 63 0.16
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (134 bp):
TGGACAAAGCCAACTCTTATTTAAGCGTTGCATTAGGCATGCATATCCCAACCCTTATACAAAGA
GTTGGCTAAAGCATAAGTCGGCAAGTCTACCCCAACACTTAAGTGCACAAAAAAGTATCGTCTTA
GGAC
Found at i:7424870 original size:132 final size:131
Alignment explanation
Indices: 7424690--7425062 Score: 579
Period size: 132 Copynumber: 2.8 Consensus size: 131
7424680 TAAGTTGGCC
* * *
7424690 AGTCTACCCCAACACTTCA-AAAAGTGTCACCAAAAAAGTGTCGTCTTAGGACTATACAAAAGCC
1 AGTCTATCCCAACACTT-AGAAAA-TGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCC
7424754 AACTTTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
64 AACTTTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAG
7424819 CAT
129 CAT
7424822 AGTCTATCCCAACACTTAGTAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCA
1 AGTCTATCCCAACACTTAG-AAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCA
** * *
7424887 ACTTTTATTCAAGAATTGCCTTAGGCATACATATACCAACCCTTATACAAAGAGTTGGCCAAAGC
65 ACTTTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGC
7424952 AT
130 AT
* * * *
7424954 AGTCTATCCCAACACTTAGGAAATGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAACCAA
1 AGTCTATCCCAACACTTAGAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
* *
7425019 CTCTTATTCAAGCGTTGCTTTAGGT-ATACATATCCCAACCCTTA
66 CTTTTATTCAAGCGTTGCCTTA-GTCATACATATCCCAACCCTTA
7425063 GGAAAGTGTT
Statistics
Matches: 221, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
131 79 0.36
132 138 0.62
133 4 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (131 bp):
AGTCTATCCCAACACTTAGAAAATGTCGCCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
CTTTTATTCAAGCGTTGCCTTAGTCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCA
T
Found at i:7425066 original size:91 final size:91
Alignment explanation
Indices: 7424958--7425153 Score: 304
Period size: 91 Copynumber: 2.2 Consensus size: 91
7424948 AAGCATAGTC
* *
7424958 TATCCCAACACTTAGGAAA-TGTTGCCACAAAAGTGTCGTCTTAGGACTAGACAAAAACCAACTC
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGAC-AAAACCAACTC
* *
7425022 TTATTCAAGCGTTGCTTTAGGTATACA
65 TTATTCAAGCGTTACTTTAGGCATACA
* *
7425049 TATCCCAACCCTTAGGAAAGTGTTGCCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCT
1 TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGACAAAACCAACTCT
*
7425114 TATTTAAGCGTTACTTTAGGCATACA
66 TATTCAAGCGTTACTTTAGGCATACA
*
7425140 TATACCAACCCTTA
1 TATCCCAACCCTTA
7425154 TACAAAGAGT
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
91 65 0.68
92 31 0.32
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (91 bp):
TATCCCAACCCTTAGGAAAGTGTTGCCACAAAAGTGTCGTCATAGGACTAGACAAAACCAACTCT
TATTCAAGCGTTACTTTAGGCATACA
Found at i:7425290 original size:120 final size:120
Alignment explanation
Indices: 7425074--7425292 Score: 307
Period size: 120 Copynumber: 1.8 Consensus size: 120
7425064 GAAAGTGTTG
**
7425074 CCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTACTTTAGGCATAC
1 CCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATAAAAGCGTTACTTTAGGCATAC
*
7425139 ATATACCAACCCTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACACTTC
66 ATATACCAACACTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACACTTC
* ** * *
7425194 CCCCAAAAGTGTCGTCTTAGGACTAGACTTTTA-CCAACTCTTATAAAAGCGTTGCTTTAGGCTT
1 CCCCAAAAGTGTCGTCATAGGACTAGAC--AAAGCCAACTCTTATAAAAGCGTTACTTTAGGCAT
* * *
7425258 GCATATCCCAACACTTAT-GAAAGAGTTGGCTAAAG
64 ACATATACCAACACTTATACAAAGAGTTGGCTAAAG
7425293 CGTATTTGGC
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
120 43 0.50
121 42 0.49
122 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (120 bp):
CCCCAAAAGTGTCGTCATAGGACTAGACAAAGCCAACTCTTATAAAAGCGTTACTTTAGGCATAC
ATATACCAACACTTATACAAAGAGTTGGCTAAAGTCCAGTCTATACCAACACTTC
Found at i:7427223 original size:21 final size:21
Alignment explanation
Indices: 7427199--7427238 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7427189 AAGATATACT
*
7427199 TATATAAATATATATTAAAGA
1 TATATAAATATATAATAAAGA
*
7427220 TATATACATATATAATAAA
1 TATATAAATATATAATAAA
7427239 ATACATGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TATATAAATATATAATAAAGA
Found at i:7432163 original size:30 final size:30
Alignment explanation
Indices: 7432119--7432175 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7432109 ACCAAGGAAG
*
7432119 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAAAACTAGTAGAAAAACCTTGAGCC
* *
7432149 CCTTGAAAAGTAGTAGGAAAACCTTGA
1 CCTTGAAAACTAGTAGAAAAACCTTGA
7432176 AAACCTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (30 bp):
CCTTGAAAACTAGTAGAAAAACCTTGAGCC
Found at i:7432183 original size:30 final size:30
Alignment explanation
Indices: 7432119--7432183 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
7432109 ACCAAGGAAG
* ***
7432119 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAAAACTAGTAGAAAAACCTTGAAAA
* *
7432149 CCTTGAAAAGTAGTAGGAAAACCTTGAAAA
1 CCTTGAAAACTAGTAGAAAAACCTTGAAAA
7432179 CCTTG
1 CCTTG
7432184 TGGAGAAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (30 bp):
CCTTGAAAACTAGTAGAAAAACCTTGAAAA
Found at i:7438101 original size:6 final size:6
Alignment explanation
Indices: 7438085--7438116 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7438075 ACTGAAATTA
*
7438085 ATTTTG GTTTTG ATTTTG ATTTTG ATTTTG AT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG AT
7438117 GGGGTGATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.19, T:0.66
Consensus pattern (6 bp):
ATTTTG
Found at i:7441279 original size:29 final size:29
Alignment explanation
Indices: 7441223--7441295 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 29
7441213 TTTTCTTACT
* * * *
7441223 AAAATATTATAATAAAAAAATAAAATACG
1 AAAATAGTATATTTAAAAAATAAAATACC
* *
7441252 AAAATAGTATATTTAAAAAATTATATACC
1 AAAATAGTATATTTAAAAAATAAAATACC
* *
7441281 AAAATGGTACATTTA
1 AAAATAGTATATTTA
7441296 GGGTGGTCAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.30
Consensus pattern (29 bp):
AAAATAGTATATTTAAAAAATAAAATACC
Found at i:7444154 original size:24 final size:25
Alignment explanation
Indices: 7444114--7444164 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
7444104 ATTCTTTTCA
*
7444114 TTTTATTTTTTGAATTTT-GAATTT
1 TTTTATTTTTTAAATTTTAGAATTT
*
7444138 TTTTA-TTTTTAACATTTTATAATTT
1 TTTTATTTTTTAA-ATTTTAGAATTT
7444163 TT
1 TT
7444165 AAATATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 6 0.26
24 10 0.43
25 7 0.30
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTTATTTTTTAAATTTTAGAATTT
Found at i:7446384 original size:22 final size:21
Alignment explanation
Indices: 7446345--7446619 Score: 76
Period size: 21 Copynumber: 13.2 Consensus size: 21
7446335 GTTATTTTAA
*
7446345 TATTATTATTATT-GTATTTAT
1 TATTATTATTATTACTA-TTAT
* *
7446366 TATTATTGTTGTTACTATTA-
1 TATTATTATTATTACTATTAT
7446386 T-TTATTATTATTACTATTAT
1 TATTATTATTATTACTATTAT
*
7446406 TATTA-CA-TA-T-C-ATTAT
1 TATTATTATTATTACTATTAT
* * *
7446422 TCTTCTTATTATGTTCTA-TAT
1 TATTATTATTAT-TACTATTAT
** * *
7446443 TATTACCAGTATTAACGTATTAC
1 TATTATTATTATT-AC-TATTAT
* * * *
7446466 TACTATCATTACTATTA-TACT
1 TATTATTATTATTACTATTA-T
* * *
7446487 TATTATTGTTCTTAGTATTAT
1 TATTATTATTATTACTATTAT
*
7446508 TATT-TTCATTACTGTCACCATTAT
1 TATTATT-ATTA-T-T-ACTATTAT
* * * *
7446532 CACTATTATT-TTCCTTTATCAT
1 TATTATTATTATTAC--TATTAT
* *
7446554 TATTATTTTCTATTACTATTAA
1 TATTATTAT-TATTACTATTAT
7446576 TA-TATTATTATTACTATT-T
1 TATTATTATTATTACTATTAT
* * * *
7446595 TTTTATT-TTTTTATTATCAT
1 TATTATTATTATTACTATTAT
7446615 TATTA
1 TATTA
7446620 ACATATCATT
Statistics
Matches: 179, Mismatches: 50, Indels: 51
0.64 0.18 0.18
Matches are distributed among these distances:
16 8 0.04
17 2 0.01
18 3 0.02
19 27 0.15
20 29 0.16
21 55 0.31
22 26 0.15
23 13 0.07
24 14 0.08
25 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (21 bp):
TATTATTATTATTACTATTAT
Found at i:7446403 original size:12 final size:12
Alignment explanation
Indices: 7446388--7446511 Score: 56
Period size: 12 Copynumber: 9.8 Consensus size: 12
7446378 TACTATTATT
7446388 TATTATTATTAC
1 TATTATTATTAC
7446400 TATTATTATTAC
1 TATTATTATTAC
*
7446412 ATATCATTATT-C
1 -TATTATTATTAC
* *
7446424 TTCTTATTATGTTC
1 -TATTATTAT-TAC
7446438 TA-TATTATTACC
1 TATTATTATTA-C
*
7446450 AGTATTAACGTATTAC
1 --TATT-A-TTATTAC
* *
7446466 TACTATCATTAC
1 TATTATTATTAC
*
7446478 TATTA-TACTTAT
1 TATTATTA-TTAC
* * *
7446490 TATTGTTCTTAG
1 TATTATTATTAC
7446502 TATTATTATT
1 TATTATTATT
7446512 TTCATTACTG
Statistics
Matches: 83, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
11 2 0.02
12 54 0.65
13 13 0.16
14 6 0.07
15 1 0.01
16 2 0.02
17 5 0.06
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7446447 original size:3 final size:3
Alignment explanation
Indices: 7446330--7446433 Score: 68
Period size: 3 Copynumber: 34.3 Consensus size: 3
7446320 TTGGACATTT
* * * *
7446330 TTA TTG TTA TT- TTA ATA TTA TTA TTA TT- GTA TTTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * *
7446374 TTG TTA CTA TTA TTTA TTA TTA TTA CTA TTA TTA TTA CATA TCA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* *
7446421 TTC TTC TTA TTA T
1 TTA TTA TTA TTA T
7446434 GTTCTATATT
Statistics
Matches: 78, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
2 3 0.04
3 68 0.87
4 7 0.09
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:7446574 original size:19 final size:19
Alignment explanation
Indices: 7446535--7446593 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
7446525 CCATTATCAC
7446535 TATTATTTTCCT-TTA-TCAT
1 TATTATTTT-CTATTACT-AT
7446554 TATTATTTTCTATTACTAT
1 TATTATTTTCTATTACTAT
*
7446573 TAATATATTAT-TATTACTAT
1 T-AT-TATTTTCTATTACTAT
7446593 T
1 T
7446594 TTTTTATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
18 2 0.06
19 15 0.43
20 13 0.37
21 5 0.14
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTATTTTCTATTACTAT
Found at i:7446645 original size:26 final size:26
Alignment explanation
Indices: 7446602--7446651 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
7446592 TTTTTTTATT
*
7446602 TTTTTATTATCATTATTAACATATCA
1 TTTTTATTATCATCATTAACATATCA
* *
7446628 TTTTTATTTTTATCATTAACATAT
1 TTTTTATTATCATCATTAACATAT
7446652 TATTATGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTATTATCATCATTAACATATCA
Found at i:7450363 original size:27 final size:27
Alignment explanation
Indices: 7450322--7450475 Score: 89
Period size: 28 Copynumber: 5.6 Consensus size: 27
7450312 TAATTATATG
** *
7450322 TGGCACTTAACGTGCGAAGTATCGGGA
1 TGGCACTTAGTGTGCGAAGTATCAGGA
* **
7450349 TGGCACTTAGTGTGCGATA-CATCCAAAA
1 TGGCACTTAGTGTGCGA-AGTAT-CAGGA
* * *
7450377 CGGCACTTAGTATGCGAAGTAACAAGGA
1 TGGCACTTAGTGTGCGAAGTATC-AGGA
* * *
7450405 TGGCACTTAGTGTGCGAAATGTCCAGAA
1 TGGCACTTAGTGTGCGAAGTAT-CAGGA
* * * *
7450433 CGGAACTTAGTGTGC-AAG-ATTGAGTA
1 TGGCACTTAGTGTGCGAAGTA-TCAGGA
*
7450459 TGGCACCTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
7450476 TATATTGAAT
Statistics
Matches: 93, Mismatches: 27, Indels: 14
0.69 0.20 0.10
Matches are distributed among these distances:
26 15 0.16
27 23 0.25
28 54 0.58
29 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (27 bp):
TGGCACTTAGTGTGCGAAGTATCAGGA
Found at i:7450559 original size:32 final size:32
Alignment explanation
Indices: 7450523--7450619 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
7450513 TAAGTATGAG
* * *
7450523 ATTGGTACGAGATGATACAGGTATCTATGGAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
7450555 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
7450587 ATTGGTACAATAT-AGTACATGTATGTACGAAA
1 ATTGGTACAAGATGA-TACAGGTATCTACGAAA
7450619 A
1 A
7450620 ATCAATTGAG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGAAA
Found at i:7456694 original size:56 final size:56
Alignment explanation
Indices: 7456610--7456824 Score: 263
Period size: 56 Copynumber: 3.8 Consensus size: 56
7456600 TTATATATGG
* *
7456610 CACTTAACGTGCGAAGTATTGGGGATGGCACTTAGTGTGCAATACATCCAGAACGG
1 CACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAACGA
7456666 CACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAACGA
1 CACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAACGA
** * ** * * *
7456722 CACTTAGTGTGCGAAGTAACAAGGATGGCACTTAGTTTACGAA-ACATCAAGAACGA
1 CACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGC-AATACATCCAGAACGA
** * * *
7456778 CACTTAGTGTGC-AAGGTATCGGGTATGGCACCTAGTGTGCGATACAT
1 CACTTAACGTGCGAA-GTATCGGGGATGGCACTTAGTGTGCAATACAT
7456825 TGAATATTAA
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
55 3 0.02
56 133 0.96
57 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (56 bp):
CACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCAATACATCCAGAACGA
Found at i:7456705 original size:28 final size:28
Alignment explanation
Indices: 7456606--7456819 Score: 105
Period size: 28 Copynumber: 7.6 Consensus size: 28
7456596 ATAATTATAT
** * * *
7456606 ATGGCACTTAACGTGCGAAGTATTGGGG
1 ATGGCACTTAGTGTGCGAAGTATCGAGA
*
7456634 ATGGCACTTAGTGTGC-AA-TACATCCAGA
1 ATGGCACTTAGTGTGCGAAGT--ATCGAGA
* ** * *
7456662 ACGGCACTTAACGTGCGAAGTATCGGGG
1 ATGGCACTTAGTGTGCGAAGTATCGAGA
*
7456690 ATGGCACTTAGTGTGC-AA-TACATCCAGA
1 ATGGCACTTAGTGTGCGAAGT--ATCGAGA
* * * * *
7456718 ACGACACTTAGTGTGCGAAGTAACAAGG
1 ATGGCACTTAGTGTGCGAAGTATCGAGA
* * ** *
7456746 ATGGCACTTAGTTTACGAAACATCAAGA
1 ATGGCACTTAGTGTGCGAAGTATCGAGA
* * * *
7456774 ACGACACTTAGTGTGC-AAGGTATCGGGT
1 ATGGCACTTAGTGTGCGAA-GTATCGAGA
*
7456802 ATGGCACCTAGTGTGCGA
1 ATGGCACTTAGTGTGCGA
7456820 TACATTGAAT
Statistics
Matches: 133, Mismatches: 43, Indels: 19
0.68 0.22 0.10
Matches are distributed among these distances:
26 2 0.02
27 6 0.05
28 118 0.89
29 5 0.04
30 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAGTATCGAGA
Found at i:7456941 original size:32 final size:32
Alignment explanation
Indices: 7456867--7456943 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
7456857 TGAGTATGAG
* * *
7456867 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGATAAAGGTATCTACGGAA
* * *
7456899 ATTGGTACAATATGGTAAAGGTATGTACGGGA
1 ATTGGTACAATATGATAAAGGTATCTACGGAA
7456931 ATTGGTACAATAT
1 ATTGGTACAATAT
7456944 AGTACGTGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (32 bp):
ATTGGTACAATATGATAAAGGTATCTACGGAA
Found at i:7456955 original size:32 final size:32
Alignment explanation
Indices: 7456885--7456965 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
7456875 GAGATGATAC
* *
7456885 AGGTATCTACGGAAATTGGTACAATATGGTAA
1 AGGTATGTACGGAAATTGGTACAATATAGTAA
*
7456917 AGGTATGTACGGGAATTGGTACAATATAGT-A
1 AGGTATGTACGGAAATTGGTACAATATAGTAA
* *
7456948 CGTGTATGTACGAAAATT
1 AG-GTATGTACGGAAATT
7456966 CAATTGAGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 40 0.95
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.30
Consensus pattern (32 bp):
AGGTATGTACGGAAATTGGTACAATATAGTAA
Found at i:7459609 original size:28 final size:28
Alignment explanation
Indices: 7459548--7459612 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
7459538 TCAGTGTACG
* **
7459548 AAATATTGAGAATGGCACTTAATGTGTG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
7459576 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
7459604 AAATATTGA
1 AAATATTGA
7459613 ATGATTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:7459729 original size:39 final size:39
Alignment explanation
Indices: 7459685--7460012 Score: 412
Period size: 39 Copynumber: 8.7 Consensus size: 39
7459675 GACTTTATAA
*
7459685 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
7459724 TGGTGTTATATCCGGACTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
7459763 TAGTGTTATATCCGGGCTAAGTCCCGAAGGTATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
7459802 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCA-T--T-C
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
7459837 --GTG------CCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
7459868 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCATGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*** *
7459907 TGGTGTTATATCTAAGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
7459946 TGGTGTTATATCCGGGCTAAAGTCCTGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
7459985 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
7460013 TATTCTTTGT
Statistics
Matches: 251, Mismatches: 24, Indels: 27
0.83 0.08 0.09
Matches are distributed among these distances:
27 21 0.08
28 1 0.00
30 1 0.00
31 1 0.00
33 6 0.02
35 1 0.00
36 1 0.00
38 1 0.00
39 199 0.79
40 19 0.08
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:7459851 original size:27 final size:27
Alignment explanation
Indices: 7459813--7459867 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7459803 GGTGTTATAT
7459813 CCGGGCTAAGTCCCGAAGGCATTCGTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTG
7459840 CCGGGCTAAGTCCCGAAGGCATTCGTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTG
7459867 C
1 C
7459868 TGGTGTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (27 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTG
Found at i:7459880 original size:66 final size:66
Alignment explanation
Indices: 7459774--7459970 Score: 250
Period size: 66 Copynumber: 2.8 Consensus size: 66
7459764 AGTGTTATAT
* *
7459774 CCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
7459839 G
66 G
7459840 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
7459905 G
66 G
*
7459906 CTGGTGTTATATCTAAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCC
1 CCGG-G------CTAAG-T----CCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCC
7459971 TGCAGGCTTT
Statistics
Matches: 115, Mismatches: 3, Indels: 13
0.88 0.02 0.10
Matches are distributed among these distances:
66 67 0.58
67 1 0.01
73 5 0.04
74 1 0.01
78 35 0.30
79 6 0.05
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.26
Consensus pattern (66 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
G
Found at i:7459926 original size:105 final size:105
Alignment explanation
Indices: 7459735--7459945 Score: 341
Period size: 105 Copynumber: 2.0 Consensus size: 105
7459725 GGTGTTATAT
* * *
7459735 CCGGACTAAGTCCTGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGTATTCGT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
** *
7459800 GCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTG
66 GCTGGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTG
* *
7459840 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
*
7459905 GCTGGTGTTATATCTAAGCTAAGCCCCGAAGGCATTCGTG
66 GCTGGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTG
7459945 C
1 C
7459946 TGGTGTTATA
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 97 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (105 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
GCTGGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTG
Found at i:7459956 original size:144 final size:145
Alignment explanation
Indices: 7459696--7459970 Score: 453
Period size: 144 Copynumber: 1.9 Consensus size: 145
7459686 GGTGTTATAT
* * *
7459696 CCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGTTATATCCGGACTAAGTCCTGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGACTAAGTCCCGAAGGCATTCAT
** * *
7459761 GCTAGTGTTATATCCGGGCTAAGTCCCGAAGGTATTCGTGCTGGTGTTATATCCGGGCT-AAGTC
66 GCTAGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTC
7459825 CCGAAGGCATTCGTG
131 CCGAAGGCATTCGTG
*
7459840 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGACTAAGTCCCGAAGGCATTCAT
* *
7459905 GCTGGTGTTATATCTAAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTC
66 GCTAGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTC
7459970 C
131 C
7459971 TGCAGGCTTT
Statistics
Matches: 120, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
144 114 0.95
145 6 0.05
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (145 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGACTAAGTCCCGAAGGCATTCAT
GCTAGTGTTATATCCAAGCTAAGCCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTC
CCGAAGGCATTCGTG
Found at i:7473130 original size:44 final size:44
Alignment explanation
Indices: 7473082--7473274 Score: 109
Period size: 45 Copynumber: 4.3 Consensus size: 44
7473072 GTAGTAGGCA
* * *
7473082 AGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAATAGCAGTGG
1 AGCAGATTAAAGACACCAACCTTATCTCCCTGAAATAGCAGTGG
* * * **** * * *
7473126 AGCAGACTGAATATTGTAGATCTTATCTTCCTGAAGA-AGCAGTGA
1 AGCAGATTAAAGACACCA-ACCTTATCTCCCTGAA-ATAGCAGTGG
* ** * ** *
7473171 AGCAGATCAAAGACAGTGAACCTTATCTCCATGAAGCAGCAATGG
1 AGCAGATTAAAGACA-CCAACCTTATCTCCCTGAAATAGCAGTGG
* * * * *
7473216 AGCATATTCAAGCCACCAACCTTATCTCCCTGAAATGGCAGCGG
1 AGCAGATTAAAGACACCAACCTTATCTCCCTGAAATAGCAGTGG
* *
7473260 AGCAGACTGAAGACA
1 AGCAGATTAAAGACA
7473275 GCGATTCTTA
Statistics
Matches: 103, Mismatches: 42, Indels: 8
0.67 0.27 0.05
Matches are distributed among these distances:
44 42 0.41
45 59 0.57
46 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (44 bp):
AGCAGATTAAAGACACCAACCTTATCTCCCTGAAATAGCAGTGG
Found at i:7473563 original size:14 final size:14
Alignment explanation
Indices: 7473524--7473565 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
7473514 GGCAGCTGTC
7473524 AGCAAAAGGCCC-A
1 AGCAAAAGGCCCAA
* *
7473537 ATCAAAACAGCCCAA
1 AGCAAAA-GGCCCAA
7473552 AGCAAAAGGCCCAA
1 AGCAAAAGGCCCAA
7473566 TTTCCCTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 6 0.26
14 10 0.43
15 7 0.30
ACGTcount: A:0.50, C:0.31, G:0.17, T:0.02
Consensus pattern (14 bp):
AGCAAAAGGCCCAA
Found at i:7474016 original size:19 final size:19
Alignment explanation
Indices: 7473980--7474015 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7473970 ATATATATAA
7473980 ATATGTATTTATTAAAAAT
1 ATATGTATTTATTAAAAAT
*
7473999 ATAT-TATTTTTTAAAAA
1 ATATGTATTTATTAAAAA
7474016 AACTTACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
ATATGTATTTATTAAAAAT
Found at i:7476964 original size:28 final size:28
Alignment explanation
Indices: 7476893--7476980 Score: 74
Period size: 29 Copynumber: 3.1 Consensus size: 28
7476883 CTTTATACAT
* *
7476893 ATATACATTATTT-GTTTTAAAT-TTTT
1 ATATACATTATTTATTTTTAAATCTTTC
* *
7476919 ATATA-TTTACTGTCATTTTTAAATCTTTC
1 ATATACATTA-T-TTATTTTTAAATCTTTC
*
7476948 ATATACATTATTTATTTTTTAAGTCTTTAC
1 ATATACATTATTTA-TTTTTAAATCTTT-C
7476978 ATA
1 ATA
7476981 CTGTTATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
25 3 0.06
26 6 0.12
27 1 0.02
28 10 0.21
29 21 0.44
30 7 0.15
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.57
Consensus pattern (28 bp):
ATATACATTATTTATTTTTAAATCTTTC
Found at i:7477248 original size:26 final size:24
Alignment explanation
Indices: 7477180--7477280 Score: 81
Period size: 24 Copynumber: 4.4 Consensus size: 24
7477170 CTATATGTTG
7477180 TTTTAAA-TTGTTATATA-TATTA
1 TTTTAAATTTGTTATATATTATTA
** *
7477202 -TTTATTTTTGCT-T-TATT-TTA
1 TTTTAAATTTGTTATATATTATTA
7477222 TTTTAAATTATGTTATATATTAATTA
1 TTTTAAATT-TGTTATATATT-ATTA
*
7477248 TTTTAAA-TTGTTTTATATTATCTA
1 TTTTAAATTTGTTATATATTAT-TA
*
7477272 CTTTAAATT
1 TTTTAAATT
7477281 GCTTCGTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
20 5 0.08
21 12 0.20
22 7 0.11
23 3 0.05
24 22 0.36
25 2 0.03
26 10 0.16
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTTAAATTTGTTATATATTATTA
Found at i:7479126 original size:47 final size:46
Alignment explanation
Indices: 7479001--7479131 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
7478991 ATAATCTCAC
* * * * *
7479001 CCATAATGAACTCAGAACGCAACTCAATGAGCTCAGCTGTTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATCTTCGCAT
* *
7479047 CCATAATGAACTAGGAACACAACTCAATGAGTTCGGATACTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGAT-CTTCGCAT
* *
7479093 CCATAGGTGAACTCGGAACGCAACTCAACGAGTTCGGAT
1 CCATA-ATGAACTCGGAACGCAACTCAATGAGTTCGGAT
7479132 GCCTCATAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
46 41 0.57
47 31 0.43
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAATGAGTTCGGATCTTCGCAT
Found at i:7491338 original size:46 final size:46
Alignment explanation
Indices: 7491248--7491374 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
7491238 ATAATCTCAC
* *
7491248 CCATAATGAACTCGGAATGCAACTCAACGAGCTT-GGGTGTTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAG-TTCGGATGTTTGCAT
* * *
7491294 CTATAATGAACTCGGAACACAACTCAACGAGTTCTGAT-TCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGT-TTGCAT
* *
7491340 CCACAGGTGAACTCGGAACGCAACTCAACGAGTTC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTC
7491375 AGATCTCAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
45 3 0.04
46 39 0.57
47 27 0.39
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGTTTGCAT
Found at i:7497658 original size:30 final size:30
Alignment explanation
Indices: 7497599--7497659 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
7497589 AATAACAAAA
*
7497599 AATTGTAAAAGCATTCAACATCTTGATATT
1 AATTGTAAAAGCATTCAACATCTTAATATT
7497629 AATTGTAAAAGCATTCAACAAT-TTAATATT
1 AATTGTAAAAGCATTCAAC-ATCTTAATATT
7497659 A
1 A
7497660 TGCAAATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.36
Consensus pattern (30 bp):
AATTGTAAAAGCATTCAACATCTTAATATT
Found at i:7498715 original size:13 final size:13
Alignment explanation
Indices: 7498697--7498721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7498687 TTTAAGTAAA
7498697 TATTATATTATAT
1 TATTATATTATAT
7498710 TATTATATTATA
1 TATTATATTATA
7498722 ATAAAAGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:7499465 original size:5 final size:5
Alignment explanation
Indices: 7499457--7499483 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7499447 AGTATTGGTC
7499457 TTGAA TTGAA TTGAA TTGAA TTGAA TT
1 TTGAA TTGAA TTGAA TTGAA TTGAA TT
7499484 ATGAGTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (5 bp):
TTGAA
Found at i:7499800 original size:20 final size:20
Alignment explanation
Indices: 7499775--7499825 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
7499765 ACTATGATTG
*
7499775 GAATTGGAAATATTGTAT-GT
1 GAATT-GAAATATTGGATAGT
7499795 GAATTGAAA-ATTGGATAGT
1 GAATTGAAATATTGGATAGT
*
7499814 AAATTGAAATAT
1 GAATTGAAATAT
7499826 GCAATGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 6 0.22
19 14 0.52
20 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (20 bp):
GAATTGAAATATTGGATAGT
Found at i:7505323 original size:47 final size:47
Alignment explanation
Indices: 7505257--7505731 Score: 772
Period size: 47 Copynumber: 10.1 Consensus size: 47
7505247 GAAATGATAG
7505257 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
7505304 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
7505353 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
7505400 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
7505447 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
7505494 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
7505541 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
7505588 TAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
7505635 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
7505682 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
7505728 TAAG
1 TAAG
7505732 TCCCGAAGGG
Statistics
Matches: 404, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 37 0.09
47 320 0.79
49 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:7505906 original size:37 final size:37
Alignment explanation
Indices: 7505850--7505928 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
7505840 CCGAGCTCTA
* *
7505850 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCAGGT
* *
7505887 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
7505924 AAGAC
1 AAGAC
7505929 TTCGTAACAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:7518488 original size:19 final size:18
Alignment explanation
Indices: 7518466--7518510 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
7518456 AATTTTCTGT
* *
7518466 AAAAATATATTTTTTTTA
1 AAAAATACATTATTTTTA
7518484 AAAAATAACATTATTTTTA
1 AAAAAT-ACATTATTTTTA
7518503 GAAAAATA
1 -AAAAATA
7518511 ACAAACGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 6 0.26
19 11 0.48
20 6 0.26
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
AAAAATACATTATTTTTA
Found at i:7520782 original size:43 final size:43
Alignment explanation
Indices: 7520735--7520820 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
7520725 ATGATAATAT
7520735 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
1 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
7520778 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
1 AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
7520821 GATAAAAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (43 bp):
AAGGTGACTAACATATGTTTAAAATGAATAAAACCATAAAAAC
Found at i:7533027 original size:15 final size:17
Alignment explanation
Indices: 7533007--7533044 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7532997 TGGCAATTGG
7533007 AAAAT-ATATT-TTAAA
1 AAAATAATATTCTTAAA
7533022 AAAATAATATTCTTAAA
1 AAAATAATATTCTTAAA
7533039 AGAAAT
1 A-AAAT
7533045 TCTAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 5 0.25
16 5 0.25
17 6 0.30
18 4 0.20
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAATAATATTCTTAAA
Found at i:7534208 original size:22 final size:22
Alignment explanation
Indices: 7534169--7534211 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7534159 CTACAAACAA
7534169 TTATAAATTTTTATATTTTTTT
1 TTATAAATTTTTATATTTTTTT
*
7534191 TTATAATTTTATTA-ATTTTTT
1 TTATAAATTT-TTATATTTTTT
7534212 ATATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
TTATAAATTTTTATATTTTTTT
Found at i:7534269 original size:19 final size:20
Alignment explanation
Indices: 7534245--7534297 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
7534235 TTTATTATTT
7534245 AAAAAATCTAAAAATAT-AA
1 AAAAAATCTAAAAATATGAA
* * *
7534264 AAAAAATCCCAAAATTTTGAA
1 AAAAAAT-CTAAAAATATGAA
7534285 AAAAAATCTAAAA
1 AAAAAATCTAAAA
7534298 TTTCAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 7 0.25
20 12 0.43
21 9 0.32
ACGTcount: A:0.68, C:0.09, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAAAATCTAAAAATATGAA
Found at i:7534286 original size:21 final size:20
Alignment explanation
Indices: 7534262--7534300 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7534252 CTAAAAATAT
7534262 AAAAAAAATCCCAAAATTTTG
1 AAAAAAAAT-CCAAAATTTTG
*
7534283 AAAAAAAATCTAAAATTT
1 AAAAAAAATCCAAAATTT
7534301 CAAAAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAAAAATCCAAAATTTTG
Found at i:7534305 original size:19 final size:18
Alignment explanation
Indices: 7534245--7534319 Score: 69
Period size: 19 Copynumber: 3.9 Consensus size: 18
7534235 TTTATTATTT
*
7534245 AAAAAATCTAAAAATATAA
1 AAAAAATCT-AAAATTTAA
*
7534264 AAAAAATCCCAAAATTTTGAA
1 AAAAAAT-CTAAAA-TTT-AA
7534285 AAAAAATCTAAAATTTCAA
1 AAAAAATCTAAAATTT-AA
* *
7534304 AAAATACCTAAAATTT
1 AAAAAATCTAAAATTT
7534320 TCCCTAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 30 0.64
20 8 0.17
21 9 0.19
ACGTcount: A:0.63, C:0.11, G:0.01, T:0.25
Consensus pattern (18 bp):
AAAAAATCTAAAATTTAA
Found at i:7534306 original size:39 final size:40
Alignment explanation
Indices: 7534245--7534320 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
7534235 TTTATTATTT
7534245 AAAAAATCTAAAAATATAAAAAAA-ATCCCAAAATTTTGAA
1 AAAAAATCTAAAAATATAAAAAAATA-CCCAAAATTTTGAA
* * *
7534285 AAAAAATCT-AAAATTTCAAAAAATACCTAAAATTTT
1 AAAAAATCTAAAAATATAAAAAAATACCCAAAATTTT
7534321 CCCTAAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 22 0.69
40 10 0.31
ACGTcount: A:0.62, C:0.11, G:0.01, T:0.26
Consensus pattern (40 bp):
AAAAAATCTAAAAATATAAAAAAATACCCAAAATTTTGAA
Found at i:7536573 original size:24 final size:25
Alignment explanation
Indices: 7536541--7536605 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
7536531 CTTATGAGAG
7536541 TCCCGTTATTAGCTCTCT-CGAGCT
1 TCCCGTTATTAGCTCTCTGCGAGCT
* *
7536565 TCCCGTTATATGGTTC-CTGCGAGCT
1 TCCCGTTAT-TAGCTCTCTGCGAGCT
*
7536590 TCCCGTTAATAGCTCT
1 TCCCGTTATTAGCTCT
7536606 TCGGAGTATC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
24 15 0.45
25 18 0.55
ACGTcount: A:0.14, C:0.31, G:0.18, T:0.37
Consensus pattern (25 bp):
TCCCGTTATTAGCTCTCTGCGAGCT
Found at i:7537264 original size:26 final size:26
Alignment explanation
Indices: 7537192--7537265 Score: 139
Period size: 26 Copynumber: 2.8 Consensus size: 26
7537182 ATATGTTAGG
*
7537192 TTACTGATTAATTTGATTTGAATGTA
1 TTACTGATTAATTTGATTTGGATGTA
7537218 TTACTGATTAATTTGATTTGGATGTA
1 TTACTGATTAATTTGATTTGGATGTA
7537244 TTACTGATTAATTTGATTTGGA
1 TTACTGATTAATTTGATTTGGA
7537266 AGTACTTTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.04, G:0.18, T:0.50
Consensus pattern (26 bp):
TTACTGATTAATTTGATTTGGATGTA
Found at i:7560351 original size:12 final size:12
Alignment explanation
Indices: 7560317--7560342 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7560307 TTCCCCAAGC
7560317 CTCTAACCACCG
1 CTCTAACCACCG
7560329 CTCTAACCACCG
1 CTCTAACCACCG
7560341 CT
1 CT
7560343 TTAGCCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.50, G:0.08, T:0.19
Consensus pattern (12 bp):
CTCTAACCACCG
Found at i:7576018 original size:35 final size:35
Alignment explanation
Indices: 7575979--7576048 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
7575969 AAATTGGCGA
7575979 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
1 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
7576014 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
1 TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
7576049 ACGAGTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.29, T:0.26
Consensus pattern (35 bp):
TAGAAAGTTCAACATTATTGTGGATGAAGCGAGAG
Found at i:7577610 original size:13 final size:12
Alignment explanation
Indices: 7577575--7577602 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7577565 GTTTATTTTT
7577575 ATTTATTAAATA
1 ATTTATTAAATA
7577587 ATTTATTAAATA
1 ATTTATTAAATA
7577599 ATTT
1 ATTT
7577603 TTTTAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTATTAAATA
Found at i:7579999 original size:18 final size:18
Alignment explanation
Indices: 7579964--7580024 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 18
7579954 AGGGTTGAGA
*
7579964 AAATTATTTAA-T-GTGG
1 AAATTAATTAATTAGTGG
7579980 AAATTAATTAATTAGTGG
1 AAATTAATTAATTAGTGG
* *
7579998 AAATTAATTAATTAATTG
1 AAATTAATTAATTAGTGG
7580016 AAATTAATT
1 AAATTAATT
7580025 TAAGATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 10 0.25
17 1 0.03
18 29 0.73
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
AAATTAATTAATTAGTGG
Found at i:7581847 original size:23 final size:25
Alignment explanation
Indices: 7581821--7581867 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7581811 TATCATTCAT
*
7581821 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
7581844 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
7581868 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:7582197 original size:46 final size:46
Alignment explanation
Indices: 7582140--7582475 Score: 438
Period size: 46 Copynumber: 7.7 Consensus size: 46
7582130 CCATAGTGTC
* * * *
7582140 TTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCT
** * * *
7582186 TTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
*
7582232 TTCAACCATGGTCTTACACATCTCATATCAGGTTGCCAT-GTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
*
7582277 TTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
7582323 TTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
7582361 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
7582407 TTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTATCT
1 TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
7582445 TTCAACCATGGTCTTACACATTTCATATCAG
1 TTCAACCATGGTCTTACACATTTCATATCAG
7582476 AGAGCACACT
Statistics
Matches: 259, Mismatches: 13, Indels: 36
0.84 0.04 0.12
Matches are distributed among these distances:
38 65 0.25
39 2 0.01
40 6 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 49 0.19
46 127 0.49
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCT
Found at i:7582356 original size:38 final size:38
Alignment explanation
Indices: 7582305--7582464 Score: 239
Period size: 38 Copynumber: 4.0 Consensus size: 38
7582295 CATTTCATAT
*
7582305 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
7582343 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A
7582388 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
7582427 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
7582465 TTTCATATCA
Statistics
Matches: 113, Mismatches: 1, Indels: 16
0.87 0.01 0.12
Matches are distributed among these distances:
38 70 0.62
39 1 0.01
40 3 0.03
41 1 0.01
43 1 0.01
44 3 0.03
45 1 0.01
46 33 0.29
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:7582401 original size:84 final size:84
Alignment explanation
Indices: 7582260--7582475 Score: 416
Period size: 84 Copynumber: 2.6 Consensus size: 84
7582250 CATCTCATAT
*
7582260 CAGGTTGCCAT-GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
7582324 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
7582343 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
7582408 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
7582427 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7582476 AGAGCACACT
Statistics
Matches: 131, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
83 11 0.08
84 120 0.92
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
TCAACCATGGTCTTACACA
Found at i:7584648 original size:30 final size:29
Alignment explanation
Indices: 7584601--7584668 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
7584591 ATACTAATAA
*
7584601 AATAATAATAAAATATCTTATTAAAGT-ATT
1 AATAA-AATAAAATATCTAATTAAA-TAATT
*
7584631 AATAAAATAATATTATCTAATTAAATAATT
1 AATAAAATAA-AATATCTAATTAAATAATT
7584661 -ATAAAATA
1 AATAAAATA
7584669 TCAAAATATC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 14 0.41
30 20 0.59
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (29 bp):
AATAAAATAAAATATCTAATTAAATAATT
Found at i:7585450 original size:35 final size:35
Alignment explanation
Indices: 7585404--7585474 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
7585394 AAAGATAGAG
7585404 TAGTACCACTTGTGAATTAATCAGACTTGCGATAA
1 TAGTACCACTTGTGAATTAATCAGACTTGCGATAA
7585439 TAGTACCACTTGTGAATTAATCAGACTTGCGATAA
1 TAGTACCACTTGTGAATTAATCAGACTTGCGATAA
7585474 T
1 T
7585475 TTCTGTCTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (35 bp):
TAGTACCACTTGTGAATTAATCAGACTTGCGATAA
Found at i:7586307 original size:9 final size:9
Alignment explanation
Indices: 7586293--7586319 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7586283 CAGAGAGTAC
7586293 GAATGTGCT
1 GAATGTGCT
7586302 GAATGTGCT
1 GAATGTGCT
7586311 GAATGTGCT
1 GAATGTGCT
7586320 AATAATCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.33, T:0.33
Consensus pattern (9 bp):
GAATGTGCT
Found at i:7587331 original size:23 final size:25
Alignment explanation
Indices: 7587305--7587351 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7587295 TATCATTCAT
*
7587305 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
7587328 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
7587352 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:7587672 original size:46 final size:46
Alignment explanation
Indices: 7587612--7587922 Score: 435
Period size: 46 Copynumber: 7.0 Consensus size: 46
7587602 TTTGACGTGA
* * * * * *
7587612 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
7587658 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
7587704 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7587750 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7587795 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7587841 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
7587879 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7587923 AGAGCACACT
Statistics
Matches: 242, Mismatches: 13, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
38 33 0.14
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 49 0.20
46 151 0.62
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:7587825 original size:91 final size:90
Alignment explanation
Indices: 7587612--7587922 Score: 438
Period size: 91 Copynumber: 3.5 Consensus size: 90
7587602 TTTGACGTGA
* * * * * *
7587612 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
* * * *
7587676 CCATGGTCTTATTCTTTTCATGTCACGT
65 CCATGGTCTTA-AC-ATTCATATCAGGT
*
7587704 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
7587769 CATGGTCTTACACATTCATATCAGGT
66 CATGGTCTTA-ACATTCATATCAGGT
7587795 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
7587860 CATGGTCTT-ACA--C--A-CAGGT
66 CATGGTCTTAACATTCATATCAGGT
7587879 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7587923 AGAGCACACT
Statistics
Matches: 205, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
84 49 0.24
85 1 0.00
87 1 0.00
89 3 0.01
91 86 0.42
92 65 0.32
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (90 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTAACATTCATATCAGGT
Found at i:7587843 original size:137 final size:130
Alignment explanation
Indices: 7587612--7587922 Score: 428
Period size: 137 Copynumber: 2.3 Consensus size: 130
7587602 TTTGACGTGA
* * * * * *
7587612 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAA
** * *
7587676 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTC
65 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C
7587741 ATATCAGGT
125 --A-CAGGT
7587750 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
7587814 CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
7587879 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
7587923 AGAGCACACT
Statistics
Matches: 160, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
129 38 0.24
130 11 0.07
132 1 0.01
135 3 0.02
136 3 0.02
137 75 0.47
138 29 0.18
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (130 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
Found at i:7587887 original size:38 final size:38
Alignment explanation
Indices: 7587836--7587911 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7587826 CATTTCATAT
7587836 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
7587874 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
7587912 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:7594847 original size:5 final size:5
Alignment explanation
Indices: 7594837--7594864 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7594827 CTACAGTGTG
7594837 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7594865 GAACACACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7597231 original size:41 final size:40
Alignment explanation
Indices: 7597085--7597233 Score: 181
Period size: 41 Copynumber: 3.6 Consensus size: 40
7597075 TGCAAAATTG
* * *
7597085 TAAAACACAGAGCAATAGCGGCGTTTTTATTAACACGCTGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGTTAACACGCAGC
* *
7597126 TAAAAACAGAGCAATAGCGGCGTTTTTTGTTAACACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGTTAACACGCAGC
* * *
7597167 TAAAAACAGAGTAATAGCGGCGCTTTTGGTAAAACGCAGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGTTAACACGCAGC
* *
7597207 TAAAAGTCGGAGCAATAGCGGCGCTTT
1 TAAAA-ACAGAGCAATAGCGGCGCTTT
7597234 ATTTAGCGGA
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 36 0.38
41 60 0.62
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGTTAACACGCAGC
Found at i:7597375 original size:16 final size:17
Alignment explanation
Indices: 7597349--7597382 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7597339 CTAAAATACT
*
7597349 AAACCCATAAACCTTAA
1 AAACCCATAAACCCTAA
7597366 AAACCC-TAAACCCTAA
1 AAACCCATAAACCCTAA
7597382 A
1 A
7597383 CTATAACTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AAACCCATAAACCCTAA
Found at i:7597578 original size:15 final size:15
Alignment explanation
Indices: 7597534--7597584 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
7597524 CGGTTTAATA
*
7597534 TTTAAGGTTTAAGG-
1 TTTATGGTTTAAGGT
* * *
7597548 TCTATAGTTTAGGGT
1 TTTATGGTTTAAGGT
7597563 TTTATGGTTTAAGGT
1 TTTATGGTTTAAGGT
*
7597578 TTAATGG
1 TTTATGG
7597585 CCATGGGTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
14 10 0.36
15 18 0.64
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (15 bp):
TTTATGGTTTAAGGT
Found at i:7598197 original size:8 final size:8
Alignment explanation
Indices: 7598186--7598276 Score: 99
Period size: 7 Copynumber: 12.4 Consensus size: 8
7598176 ACTCAAAAAA
7598186 TAAAAATT
1 TAAAAATT
7598194 TAAAAATT
1 TAAAAATT
7598202 T-AAAATT
1 TAAAAATT
7598209 T-AAAATT
1 TAAAAATT
7598216 T-AAAATT
1 TAAAAATT
7598223 T-AAAATT
1 TAAAAATT
7598230 TAAAAA-T
1 TAAAAATT
* *
7598237 AAAAAAAT
1 TAAAAATT
7598245 TAAAAA--
1 TAAAAATT
*
7598251 TAAAAACT
1 TAAAAATT
7598259 TAAAAATT
1 TAAAAATT
7598267 T-AAAATT
1 TAAAAATT
7598274 TAA
1 TAA
7598277 TATTTTAGTC
Statistics
Matches: 75, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
6 6 0.08
7 41 0.55
8 28 0.37
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (8 bp):
TAAAAATT
Found at i:7604494 original size:19 final size:19
Alignment explanation
Indices: 7604472--7604512 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7604462 TTTATTGATA
7604472 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
7604490 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
7604509 TTTT
1 TTTT
7604513 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:7611210 original size:38 final size:38
Alignment explanation
Indices: 7611152--7611224 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
7611142 TAACCGCTTT
*
7611152 AATTTGTTTTACTGTCTATGTTTAATCTTATTTAGGTA
1 AATTTATTTTACTGTCTATGTTTAATCTTATTTAGGTA
* *
7611190 AATTTATTTTATTGTTTATGTTTAATCTTATTTAG
1 AATTTATTTTACTGTCTATGTTTAATCTTATTTAG
7611225 ATAAGGAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (38 bp):
AATTTATTTTACTGTCTATGTTTAATCTTATTTAGGTA
Found at i:7612480 original size:41 final size:41
Alignment explanation
Indices: 7612367--7612480 Score: 149
Period size: 41 Copynumber: 2.8 Consensus size: 41
7612357 TGTTTTCAAT
* * * * *
7612367 AAAACGCCGCAAAAAACAGAGCAATAGCGGCATTTTTTATC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGACC
*
7612408 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGGCC
1 AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGACC
*
7612449 CAAACGCCGCTAAAAACTGAAG-AATAGCGGCG
1 AAAACGCCGCTAAAAACTG-AGCAATAGCGGCG
7612481 CATTTGGAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 63 0.97
42 2 0.03
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTGACC
Found at i:7612532 original size:41 final size:41
Alignment explanation
Indices: 7612473--7612874 Score: 484
Period size: 41 Copynumber: 9.6 Consensus size: 41
7612463 AACTGAAGAA
* * *
7612473 TAGCGGCGCATTTGGAAAAACGCCGCAATAGGTTGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* ** *
7612514 TAGCTGCGCTTTTGGAAAAACGCTACTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
*
7612555 TAGCGGCGAC-TTT-GTAAAACGCCGCTATAGGTCGAGGTTT
1 TAGCGGCG-CTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * * * *
7612595 TAGCGGCGGTTCTAGAAAAACGCTGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
7612636 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGTAGAGGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
7612677 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGTCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* * *
7612718 TAGCGGCGCTTTTGTAAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
* *
7612759 TAGCGACGCTTTTGGAAAAACGCCGCTATAGGCCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGG----T----CGAGGTTT
* * *
7612808 TAGCGGCGCTTTTGGGAAAACGCCGCTATAGGCCGATGTTT
1 TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
7612849 TAGCGGCGCTTTTGGAAAAACGCCGC
1 TAGCGGCGCTTTTGGAAAAACGCCGC
7612875 AAAAAAGTAA
Statistics
Matches: 319, Mismatches: 31, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
40 33 0.10
41 247 0.77
42 1 0.00
49 38 0.12
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
TAGCGGCGCTTTTGGAAAAACGCCGCTATAGGTCGAGGTTT
Done.